Multiple sequence alignment - TraesCS3B01G271200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G271200 chr3B 100.000 4382 0 0 926 5307 436732259 436727878 0.000000e+00 8093.0
1 TraesCS3B01G271200 chr3B 100.000 546 0 0 1 546 436733184 436732639 0.000000e+00 1009.0
2 TraesCS3B01G271200 chr3B 94.152 171 10 0 5137 5307 436574738 436574908 1.470000e-65 261.0
3 TraesCS3B01G271200 chr3D 97.799 1817 38 2 2183 3999 338352804 338350990 0.000000e+00 3133.0
4 TraesCS3B01G271200 chr3D 93.137 1326 60 20 3996 5307 338350962 338349654 0.000000e+00 1916.0
5 TraesCS3B01G271200 chr3D 92.857 1246 61 14 926 2147 338354054 338352813 0.000000e+00 1783.0
6 TraesCS3B01G271200 chr3D 94.012 167 10 0 5141 5307 338321170 338321336 2.450000e-63 254.0
7 TraesCS3B01G271200 chr3D 92.188 128 9 1 113 239 11337925 11338052 4.220000e-41 180.0
8 TraesCS3B01G271200 chr3A 94.693 1564 71 7 939 2494 456718903 456717344 0.000000e+00 2418.0
9 TraesCS3B01G271200 chr3A 94.023 1556 52 16 2473 3998 456704751 456703207 0.000000e+00 2320.0
10 TraesCS3B01G271200 chr3A 87.544 843 64 20 3996 4810 456701772 456700943 0.000000e+00 937.0
11 TraesCS3B01G271200 chr3A 88.912 478 29 14 4846 5307 456700944 456700475 7.710000e-158 568.0
12 TraesCS3B01G271200 chr3A 92.308 182 13 1 5127 5307 456452183 456452364 1.900000e-64 257.0
13 TraesCS3B01G271200 chr5B 92.308 130 9 1 113 241 626068822 626068693 3.260000e-42 183.0
14 TraesCS3B01G271200 chr7B 91.667 132 9 2 113 242 92205233 92205102 1.170000e-41 182.0
15 TraesCS3B01G271200 chr7B 89.928 139 13 1 113 250 332242762 332242900 1.520000e-40 178.0
16 TraesCS3B01G271200 chr1B 92.248 129 9 1 113 240 613039583 613039455 1.170000e-41 182.0
17 TraesCS3B01G271200 chr1B 91.045 134 11 1 106 238 668144281 668144148 4.220000e-41 180.0
18 TraesCS3B01G271200 chr5A 92.126 127 10 0 116 242 332786437 332786311 4.220000e-41 180.0
19 TraesCS3B01G271200 chr1A 92.188 128 9 1 113 239 574666426 574666553 4.220000e-41 180.0
20 TraesCS3B01G271200 chr7A 89.362 141 14 1 112 251 46969248 46969108 5.460000e-40 176.0
21 TraesCS3B01G271200 chr2B 96.226 53 2 0 5255 5307 637775928 637775980 2.630000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G271200 chr3B 436727878 436733184 5306 True 4551.000000 8093 100.000000 1 5307 2 chr3B.!!$R1 5306
1 TraesCS3B01G271200 chr3D 338349654 338354054 4400 True 2277.333333 3133 94.597667 926 5307 3 chr3D.!!$R1 4381
2 TraesCS3B01G271200 chr3A 456717344 456718903 1559 True 2418.000000 2418 94.693000 939 2494 1 chr3A.!!$R1 1555
3 TraesCS3B01G271200 chr3A 456700475 456704751 4276 True 1275.000000 2320 90.159667 2473 5307 3 chr3A.!!$R2 2834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 89 0.035056 GGTGATGGTGTTGGAGGAGG 60.035 60.0 0.00 0.00 0.00 4.30 F
93 94 0.104672 TGGTGTTGGAGGAGGAGGAA 60.105 55.0 0.00 0.00 0.00 3.36 F
314 315 0.109735 GCCTTGTCTTGTTTAGCGCC 60.110 55.0 2.29 0.00 0.00 6.53 F
1627 1652 0.746659 GGCTGTTTCTGTTGCTTGGT 59.253 50.0 0.00 0.00 0.00 3.67 F
1968 1993 0.802494 CTATGGTTGGTTGCGTGACC 59.198 55.0 2.79 2.79 40.23 4.02 F
3465 3502 1.291877 GAGGAGCATTGCACGTCGTT 61.292 55.0 11.91 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1950 1975 0.398696 AGGTCACGCAACCAACCATA 59.601 50.000 9.28 0.0 42.12 2.74 R
1968 1993 5.473504 ACAGCCAAGTAATTTCCTAACACAG 59.526 40.000 0.00 0.0 0.00 3.66 R
2276 2303 3.985019 TCACTCCTTTAATTACCGGCA 57.015 42.857 0.00 0.0 0.00 5.69 R
2450 2479 0.700564 AACTGTGGCCAGGATGACAT 59.299 50.000 5.11 0.0 43.36 3.06 R
3858 3915 2.550277 TGAGGTGCCTCTCCTTATCA 57.450 50.000 17.96 0.0 43.12 2.15 R
5125 6678 0.106335 TCGCAACAACTCCCGGTAAA 59.894 50.000 0.00 0.0 0.00 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.737850 CTGGTCTCATGCCTTCTAATCC 58.262 50.000 0.00 0.00 0.00 3.01
22 23 3.114606 TGGTCTCATGCCTTCTAATCCA 58.885 45.455 0.00 0.00 0.00 3.41
23 24 3.135348 TGGTCTCATGCCTTCTAATCCAG 59.865 47.826 0.00 0.00 0.00 3.86
24 25 3.135530 GGTCTCATGCCTTCTAATCCAGT 59.864 47.826 0.00 0.00 0.00 4.00
25 26 4.384647 GGTCTCATGCCTTCTAATCCAGTT 60.385 45.833 0.00 0.00 0.00 3.16
26 27 4.574013 GTCTCATGCCTTCTAATCCAGTTG 59.426 45.833 0.00 0.00 0.00 3.16
27 28 4.225942 TCTCATGCCTTCTAATCCAGTTGT 59.774 41.667 0.00 0.00 0.00 3.32
28 29 4.922206 TCATGCCTTCTAATCCAGTTGTT 58.078 39.130 0.00 0.00 0.00 2.83
29 30 6.061022 TCATGCCTTCTAATCCAGTTGTTA 57.939 37.500 0.00 0.00 0.00 2.41
30 31 6.662755 TCATGCCTTCTAATCCAGTTGTTAT 58.337 36.000 0.00 0.00 0.00 1.89
31 32 6.543465 TCATGCCTTCTAATCCAGTTGTTATG 59.457 38.462 0.00 0.00 0.00 1.90
32 33 5.192927 TGCCTTCTAATCCAGTTGTTATGG 58.807 41.667 0.00 0.00 39.33 2.74
39 40 2.567862 TCCAGTTGTTATGGATGGGGA 58.432 47.619 0.00 0.00 41.96 4.81
40 41 3.130450 TCCAGTTGTTATGGATGGGGAT 58.870 45.455 0.00 0.00 41.96 3.85
41 42 3.117550 TCCAGTTGTTATGGATGGGGATG 60.118 47.826 0.00 0.00 41.96 3.51
42 43 3.225104 CAGTTGTTATGGATGGGGATGG 58.775 50.000 0.00 0.00 0.00 3.51
43 44 2.858768 AGTTGTTATGGATGGGGATGGT 59.141 45.455 0.00 0.00 0.00 3.55
44 45 2.958355 GTTGTTATGGATGGGGATGGTG 59.042 50.000 0.00 0.00 0.00 4.17
45 46 2.497368 TGTTATGGATGGGGATGGTGA 58.503 47.619 0.00 0.00 0.00 4.02
46 47 2.442878 TGTTATGGATGGGGATGGTGAG 59.557 50.000 0.00 0.00 0.00 3.51
47 48 1.746157 TATGGATGGGGATGGTGAGG 58.254 55.000 0.00 0.00 0.00 3.86
48 49 1.723128 ATGGATGGGGATGGTGAGGC 61.723 60.000 0.00 0.00 0.00 4.70
49 50 2.111878 GATGGGGATGGTGAGGCG 59.888 66.667 0.00 0.00 0.00 5.52
50 51 4.195334 ATGGGGATGGTGAGGCGC 62.195 66.667 0.00 0.00 0.00 6.53
52 53 4.424711 GGGGATGGTGAGGCGCAA 62.425 66.667 10.83 0.00 0.00 4.85
53 54 2.124151 GGGATGGTGAGGCGCAAT 60.124 61.111 10.83 0.00 0.00 3.56
54 55 2.484062 GGGATGGTGAGGCGCAATG 61.484 63.158 10.83 0.00 0.00 2.82
55 56 2.484062 GGATGGTGAGGCGCAATGG 61.484 63.158 10.83 0.00 0.00 3.16
56 57 3.129913 GATGGTGAGGCGCAATGGC 62.130 63.158 10.83 0.00 45.27 4.40
70 71 2.141517 CAATGGCTGCTCGAGAATAGG 58.858 52.381 18.75 0.00 0.00 2.57
71 72 1.418334 ATGGCTGCTCGAGAATAGGT 58.582 50.000 18.75 0.00 0.00 3.08
72 73 0.461548 TGGCTGCTCGAGAATAGGTG 59.538 55.000 18.75 0.00 0.00 4.00
73 74 0.747255 GGCTGCTCGAGAATAGGTGA 59.253 55.000 18.75 0.00 0.00 4.02
74 75 1.342819 GGCTGCTCGAGAATAGGTGAT 59.657 52.381 18.75 0.00 0.00 3.06
75 76 2.402305 GCTGCTCGAGAATAGGTGATG 58.598 52.381 18.75 0.00 0.00 3.07
76 77 2.865670 GCTGCTCGAGAATAGGTGATGG 60.866 54.545 18.75 0.00 0.00 3.51
77 78 2.363680 CTGCTCGAGAATAGGTGATGGT 59.636 50.000 18.75 0.00 0.00 3.55
78 79 2.101415 TGCTCGAGAATAGGTGATGGTG 59.899 50.000 18.75 0.00 0.00 4.17
79 80 2.101582 GCTCGAGAATAGGTGATGGTGT 59.898 50.000 18.75 0.00 0.00 4.16
80 81 3.430929 GCTCGAGAATAGGTGATGGTGTT 60.431 47.826 18.75 0.00 0.00 3.32
81 82 4.115516 CTCGAGAATAGGTGATGGTGTTG 58.884 47.826 6.58 0.00 0.00 3.33
82 83 3.118775 TCGAGAATAGGTGATGGTGTTGG 60.119 47.826 0.00 0.00 0.00 3.77
83 84 3.118775 CGAGAATAGGTGATGGTGTTGGA 60.119 47.826 0.00 0.00 0.00 3.53
84 85 4.446371 GAGAATAGGTGATGGTGTTGGAG 58.554 47.826 0.00 0.00 0.00 3.86
85 86 3.200825 AGAATAGGTGATGGTGTTGGAGG 59.799 47.826 0.00 0.00 0.00 4.30
86 87 2.335681 TAGGTGATGGTGTTGGAGGA 57.664 50.000 0.00 0.00 0.00 3.71
87 88 0.987294 AGGTGATGGTGTTGGAGGAG 59.013 55.000 0.00 0.00 0.00 3.69
88 89 0.035056 GGTGATGGTGTTGGAGGAGG 60.035 60.000 0.00 0.00 0.00 4.30
89 90 0.984230 GTGATGGTGTTGGAGGAGGA 59.016 55.000 0.00 0.00 0.00 3.71
90 91 1.065854 GTGATGGTGTTGGAGGAGGAG 60.066 57.143 0.00 0.00 0.00 3.69
91 92 0.543749 GATGGTGTTGGAGGAGGAGG 59.456 60.000 0.00 0.00 0.00 4.30
92 93 0.119155 ATGGTGTTGGAGGAGGAGGA 59.881 55.000 0.00 0.00 0.00 3.71
93 94 0.104672 TGGTGTTGGAGGAGGAGGAA 60.105 55.000 0.00 0.00 0.00 3.36
94 95 0.615850 GGTGTTGGAGGAGGAGGAAG 59.384 60.000 0.00 0.00 0.00 3.46
95 96 1.353091 GTGTTGGAGGAGGAGGAAGT 58.647 55.000 0.00 0.00 0.00 3.01
96 97 2.537143 GTGTTGGAGGAGGAGGAAGTA 58.463 52.381 0.00 0.00 0.00 2.24
97 98 2.498078 GTGTTGGAGGAGGAGGAAGTAG 59.502 54.545 0.00 0.00 0.00 2.57
98 99 2.382305 TGTTGGAGGAGGAGGAAGTAGA 59.618 50.000 0.00 0.00 0.00 2.59
99 100 2.761767 GTTGGAGGAGGAGGAAGTAGAC 59.238 54.545 0.00 0.00 0.00 2.59
100 101 2.000803 TGGAGGAGGAGGAAGTAGACA 58.999 52.381 0.00 0.00 0.00 3.41
101 102 2.382305 TGGAGGAGGAGGAAGTAGACAA 59.618 50.000 0.00 0.00 0.00 3.18
102 103 2.761767 GGAGGAGGAGGAAGTAGACAAC 59.238 54.545 0.00 0.00 0.00 3.32
103 104 2.761767 GAGGAGGAGGAAGTAGACAACC 59.238 54.545 0.00 0.00 0.00 3.77
104 105 1.832366 GGAGGAGGAAGTAGACAACCC 59.168 57.143 0.00 0.00 0.00 4.11
105 106 2.560158 GGAGGAGGAAGTAGACAACCCT 60.560 54.545 0.00 0.00 0.00 4.34
106 107 3.309701 GGAGGAGGAAGTAGACAACCCTA 60.310 52.174 0.00 0.00 0.00 3.53
107 108 4.351127 GAGGAGGAAGTAGACAACCCTAA 58.649 47.826 0.00 0.00 0.00 2.69
108 109 4.095211 AGGAGGAAGTAGACAACCCTAAC 58.905 47.826 0.00 0.00 0.00 2.34
109 110 4.095211 GGAGGAAGTAGACAACCCTAACT 58.905 47.826 0.00 0.00 0.00 2.24
110 111 4.081586 GGAGGAAGTAGACAACCCTAACTG 60.082 50.000 0.00 0.00 0.00 3.16
111 112 4.490706 AGGAAGTAGACAACCCTAACTGT 58.509 43.478 0.00 0.00 0.00 3.55
112 113 4.906060 AGGAAGTAGACAACCCTAACTGTT 59.094 41.667 0.00 0.00 0.00 3.16
113 114 6.080009 AGGAAGTAGACAACCCTAACTGTTA 58.920 40.000 0.00 0.00 0.00 2.41
114 115 6.014755 AGGAAGTAGACAACCCTAACTGTTAC 60.015 42.308 0.00 0.00 0.00 2.50
115 116 5.735285 AGTAGACAACCCTAACTGTTACC 57.265 43.478 0.00 0.00 0.00 2.85
116 117 4.529769 AGTAGACAACCCTAACTGTTACCC 59.470 45.833 0.00 0.00 0.00 3.69
117 118 2.641321 AGACAACCCTAACTGTTACCCC 59.359 50.000 0.00 0.00 0.00 4.95
118 119 2.641321 GACAACCCTAACTGTTACCCCT 59.359 50.000 0.00 0.00 0.00 4.79
119 120 2.641321 ACAACCCTAACTGTTACCCCTC 59.359 50.000 0.00 0.00 0.00 4.30
120 121 1.962558 ACCCTAACTGTTACCCCTCC 58.037 55.000 0.00 0.00 0.00 4.30
121 122 0.828677 CCCTAACTGTTACCCCTCCG 59.171 60.000 0.00 0.00 0.00 4.63
122 123 1.565067 CCTAACTGTTACCCCTCCGT 58.435 55.000 0.00 0.00 0.00 4.69
123 124 1.904537 CCTAACTGTTACCCCTCCGTT 59.095 52.381 0.00 0.00 0.00 4.44
124 125 2.093816 CCTAACTGTTACCCCTCCGTTC 60.094 54.545 0.00 0.00 0.00 3.95
125 126 0.319405 AACTGTTACCCCTCCGTTCG 59.681 55.000 0.00 0.00 0.00 3.95
126 127 1.217244 CTGTTACCCCTCCGTTCGG 59.783 63.158 4.74 4.74 0.00 4.30
127 128 1.228831 TGTTACCCCTCCGTTCGGA 60.229 57.895 13.34 13.34 0.00 4.55
128 129 0.831288 TGTTACCCCTCCGTTCGGAA 60.831 55.000 14.79 0.00 33.41 4.30
129 130 0.321346 GTTACCCCTCCGTTCGGAAA 59.679 55.000 14.79 3.61 33.41 3.13
130 131 1.065926 GTTACCCCTCCGTTCGGAAAT 60.066 52.381 14.79 3.96 33.41 2.17
131 132 2.157640 TACCCCTCCGTTCGGAAATA 57.842 50.000 14.79 3.11 33.41 1.40
132 133 0.538584 ACCCCTCCGTTCGGAAATAC 59.461 55.000 14.79 0.00 33.41 1.89
133 134 0.828677 CCCCTCCGTTCGGAAATACT 59.171 55.000 14.79 0.00 33.41 2.12
134 135 1.208776 CCCCTCCGTTCGGAAATACTT 59.791 52.381 14.79 0.00 33.41 2.24
135 136 2.277084 CCCTCCGTTCGGAAATACTTG 58.723 52.381 14.79 1.97 33.41 3.16
136 137 2.354403 CCCTCCGTTCGGAAATACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
137 138 2.928116 CCTCCGTTCGGAAATACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
138 139 3.581755 CTCCGTTCGGAAATACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
139 140 4.181578 CTCCGTTCGGAAATACTTGTCAT 58.818 43.478 14.79 0.00 33.41 3.06
140 141 4.178540 TCCGTTCGGAAATACTTGTCATC 58.821 43.478 11.66 0.00 0.00 2.92
141 142 3.930229 CCGTTCGGAAATACTTGTCATCA 59.070 43.478 5.19 0.00 0.00 3.07
142 143 4.390603 CCGTTCGGAAATACTTGTCATCAA 59.609 41.667 5.19 0.00 0.00 2.57
143 144 5.106869 CCGTTCGGAAATACTTGTCATCAAA 60.107 40.000 5.19 0.00 32.87 2.69
144 145 6.367421 CGTTCGGAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
145 146 7.021196 CGTTCGGAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
146 147 8.172484 CGTTCGGAAATACTTGTCATCAAAATA 58.828 33.333 0.00 0.00 32.87 1.40
147 148 9.834628 GTTCGGAAATACTTGTCATCAAAATAA 57.165 29.630 0.00 0.00 32.87 1.40
203 204 9.225682 AGTTCTAGATACATCCCTTTTTATCCA 57.774 33.333 0.00 0.00 0.00 3.41
209 210 9.713684 AGATACATCCCTTTTTATCCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
233 234 9.632807 TGATAACAAATATTTTCAAACGAAGGG 57.367 29.630 0.00 0.00 0.00 3.95
234 235 9.849166 GATAACAAATATTTTCAAACGAAGGGA 57.151 29.630 0.00 0.00 0.00 4.20
235 236 9.855021 ATAACAAATATTTTCAAACGAAGGGAG 57.145 29.630 0.00 0.00 0.00 4.30
236 237 7.284919 ACAAATATTTTCAAACGAAGGGAGT 57.715 32.000 0.00 0.00 0.00 3.85
237 238 8.398878 ACAAATATTTTCAAACGAAGGGAGTA 57.601 30.769 0.00 0.00 0.00 2.59
238 239 8.294577 ACAAATATTTTCAAACGAAGGGAGTAC 58.705 33.333 0.00 0.00 0.00 2.73
239 240 7.989416 AATATTTTCAAACGAAGGGAGTACA 57.011 32.000 0.00 0.00 0.00 2.90
240 241 7.989416 ATATTTTCAAACGAAGGGAGTACAA 57.011 32.000 0.00 0.00 0.00 2.41
241 242 5.744666 TTTTCAAACGAAGGGAGTACAAG 57.255 39.130 0.00 0.00 0.00 3.16
242 243 3.396260 TCAAACGAAGGGAGTACAAGG 57.604 47.619 0.00 0.00 0.00 3.61
243 244 2.038033 TCAAACGAAGGGAGTACAAGGG 59.962 50.000 0.00 0.00 0.00 3.95
244 245 2.019807 AACGAAGGGAGTACAAGGGA 57.980 50.000 0.00 0.00 0.00 4.20
245 246 1.558233 ACGAAGGGAGTACAAGGGAG 58.442 55.000 0.00 0.00 0.00 4.30
246 247 1.076677 ACGAAGGGAGTACAAGGGAGA 59.923 52.381 0.00 0.00 0.00 3.71
247 248 1.751924 CGAAGGGAGTACAAGGGAGAG 59.248 57.143 0.00 0.00 0.00 3.20
248 249 1.483004 GAAGGGAGTACAAGGGAGAGC 59.517 57.143 0.00 0.00 0.00 4.09
249 250 0.413832 AGGGAGTACAAGGGAGAGCA 59.586 55.000 0.00 0.00 0.00 4.26
250 251 0.827368 GGGAGTACAAGGGAGAGCAG 59.173 60.000 0.00 0.00 0.00 4.24
251 252 1.562783 GGAGTACAAGGGAGAGCAGT 58.437 55.000 0.00 0.00 0.00 4.40
252 253 1.205893 GGAGTACAAGGGAGAGCAGTG 59.794 57.143 0.00 0.00 0.00 3.66
253 254 2.171840 GAGTACAAGGGAGAGCAGTGA 58.828 52.381 0.00 0.00 0.00 3.41
254 255 2.165437 GAGTACAAGGGAGAGCAGTGAG 59.835 54.545 0.00 0.00 0.00 3.51
255 256 0.898320 TACAAGGGAGAGCAGTGAGC 59.102 55.000 0.00 0.00 46.19 4.26
267 268 4.988065 GTGAGCGCACAAGTAGGA 57.012 55.556 16.26 0.00 44.51 2.94
268 269 3.210857 GTGAGCGCACAAGTAGGAA 57.789 52.632 16.26 0.00 44.51 3.36
269 270 1.508632 GTGAGCGCACAAGTAGGAAA 58.491 50.000 16.26 0.00 44.51 3.13
270 271 2.076863 GTGAGCGCACAAGTAGGAAAT 58.923 47.619 16.26 0.00 44.51 2.17
271 272 2.076100 TGAGCGCACAAGTAGGAAATG 58.924 47.619 11.47 0.00 0.00 2.32
272 273 2.076863 GAGCGCACAAGTAGGAAATGT 58.923 47.619 11.47 0.00 0.00 2.71
273 274 2.076863 AGCGCACAAGTAGGAAATGTC 58.923 47.619 11.47 0.00 0.00 3.06
274 275 1.804151 GCGCACAAGTAGGAAATGTCA 59.196 47.619 0.30 0.00 0.00 3.58
275 276 2.225491 GCGCACAAGTAGGAAATGTCAA 59.775 45.455 0.30 0.00 0.00 3.18
276 277 3.667960 GCGCACAAGTAGGAAATGTCAAG 60.668 47.826 0.30 0.00 0.00 3.02
277 278 3.667960 CGCACAAGTAGGAAATGTCAAGC 60.668 47.826 0.00 0.00 0.00 4.01
278 279 3.667960 GCACAAGTAGGAAATGTCAAGCG 60.668 47.826 0.00 0.00 0.00 4.68
279 280 3.498397 CACAAGTAGGAAATGTCAAGCGT 59.502 43.478 0.00 0.00 0.00 5.07
280 281 3.746492 ACAAGTAGGAAATGTCAAGCGTC 59.254 43.478 0.00 0.00 0.00 5.19
281 282 3.678056 AGTAGGAAATGTCAAGCGTCA 57.322 42.857 0.00 0.00 0.00 4.35
282 283 4.207891 AGTAGGAAATGTCAAGCGTCAT 57.792 40.909 0.00 0.00 0.00 3.06
283 284 4.184629 AGTAGGAAATGTCAAGCGTCATC 58.815 43.478 0.00 0.00 0.00 2.92
284 285 2.002586 AGGAAATGTCAAGCGTCATCG 58.997 47.619 0.00 0.00 40.37 3.84
285 286 1.999735 GGAAATGTCAAGCGTCATCGA 59.000 47.619 0.00 0.00 39.71 3.59
286 287 2.415168 GGAAATGTCAAGCGTCATCGAA 59.585 45.455 0.00 0.00 39.71 3.71
287 288 3.120338 GGAAATGTCAAGCGTCATCGAAA 60.120 43.478 0.00 0.00 39.71 3.46
288 289 4.463209 GAAATGTCAAGCGTCATCGAAAA 58.537 39.130 0.00 0.00 39.71 2.29
289 290 4.481930 AATGTCAAGCGTCATCGAAAAA 57.518 36.364 0.00 0.00 39.71 1.94
290 291 3.247563 TGTCAAGCGTCATCGAAAAAC 57.752 42.857 0.00 0.00 39.71 2.43
291 292 2.609916 TGTCAAGCGTCATCGAAAAACA 59.390 40.909 0.00 0.00 39.71 2.83
292 293 2.964768 GTCAAGCGTCATCGAAAAACAC 59.035 45.455 0.00 0.00 39.71 3.32
293 294 1.962547 CAAGCGTCATCGAAAAACACG 59.037 47.619 0.00 0.00 39.71 4.49
294 295 1.214367 AGCGTCATCGAAAAACACGT 58.786 45.000 0.00 0.00 39.71 4.49
295 296 1.070843 AGCGTCATCGAAAAACACGTG 60.071 47.619 15.48 15.48 39.71 4.49
296 297 1.305482 CGTCATCGAAAAACACGTGC 58.695 50.000 17.22 0.00 39.71 5.34
297 298 1.670326 GTCATCGAAAAACACGTGCC 58.330 50.000 17.22 0.00 0.00 5.01
298 299 1.263217 GTCATCGAAAAACACGTGCCT 59.737 47.619 17.22 0.00 0.00 4.75
299 300 1.944024 TCATCGAAAAACACGTGCCTT 59.056 42.857 17.22 6.56 0.00 4.35
300 301 2.043411 CATCGAAAAACACGTGCCTTG 58.957 47.619 17.22 0.85 0.00 3.61
301 302 1.088306 TCGAAAAACACGTGCCTTGT 58.912 45.000 17.22 4.21 0.00 3.16
302 303 1.062880 TCGAAAAACACGTGCCTTGTC 59.937 47.619 17.22 12.75 0.00 3.18
303 304 1.063469 CGAAAAACACGTGCCTTGTCT 59.937 47.619 17.22 0.00 0.00 3.41
304 305 2.477189 CGAAAAACACGTGCCTTGTCTT 60.477 45.455 17.22 0.88 0.00 3.01
305 306 2.559998 AAAACACGTGCCTTGTCTTG 57.440 45.000 17.22 0.00 0.00 3.02
306 307 1.459450 AAACACGTGCCTTGTCTTGT 58.541 45.000 17.22 0.00 0.00 3.16
307 308 1.459450 AACACGTGCCTTGTCTTGTT 58.541 45.000 17.22 0.00 0.00 2.83
308 309 1.459450 ACACGTGCCTTGTCTTGTTT 58.541 45.000 17.22 0.00 0.00 2.83
309 310 2.634600 ACACGTGCCTTGTCTTGTTTA 58.365 42.857 17.22 0.00 0.00 2.01
310 311 2.612212 ACACGTGCCTTGTCTTGTTTAG 59.388 45.455 17.22 0.00 0.00 1.85
311 312 1.602377 ACGTGCCTTGTCTTGTTTAGC 59.398 47.619 0.00 0.00 0.00 3.09
312 313 1.398451 CGTGCCTTGTCTTGTTTAGCG 60.398 52.381 0.00 0.00 0.00 4.26
313 314 0.591170 TGCCTTGTCTTGTTTAGCGC 59.409 50.000 0.00 0.00 0.00 5.92
314 315 0.109735 GCCTTGTCTTGTTTAGCGCC 60.110 55.000 2.29 0.00 0.00 6.53
315 316 1.234821 CCTTGTCTTGTTTAGCGCCA 58.765 50.000 2.29 0.00 0.00 5.69
316 317 1.197721 CCTTGTCTTGTTTAGCGCCAG 59.802 52.381 2.29 0.00 0.00 4.85
317 318 2.143122 CTTGTCTTGTTTAGCGCCAGA 58.857 47.619 2.29 0.00 0.00 3.86
318 319 1.795768 TGTCTTGTTTAGCGCCAGAG 58.204 50.000 2.29 0.00 0.00 3.35
319 320 1.079503 GTCTTGTTTAGCGCCAGAGG 58.920 55.000 2.29 0.00 0.00 3.69
320 321 0.973632 TCTTGTTTAGCGCCAGAGGA 59.026 50.000 2.29 0.00 0.00 3.71
321 322 1.346395 TCTTGTTTAGCGCCAGAGGAA 59.654 47.619 2.29 0.00 0.00 3.36
322 323 1.734465 CTTGTTTAGCGCCAGAGGAAG 59.266 52.381 2.29 0.00 0.00 3.46
323 324 0.973632 TGTTTAGCGCCAGAGGAAGA 59.026 50.000 2.29 0.00 0.00 2.87
324 325 1.555075 TGTTTAGCGCCAGAGGAAGAT 59.445 47.619 2.29 0.00 0.00 2.40
325 326 2.027192 TGTTTAGCGCCAGAGGAAGATT 60.027 45.455 2.29 0.00 0.00 2.40
326 327 3.010420 GTTTAGCGCCAGAGGAAGATTT 58.990 45.455 2.29 0.00 0.00 2.17
327 328 3.350219 TTAGCGCCAGAGGAAGATTTT 57.650 42.857 2.29 0.00 0.00 1.82
328 329 2.206576 AGCGCCAGAGGAAGATTTTT 57.793 45.000 2.29 0.00 0.00 1.94
348 349 5.712217 TTTTGTGTATTATCGGCTCTTCG 57.288 39.130 0.00 0.00 0.00 3.79
349 350 4.642445 TTGTGTATTATCGGCTCTTCGA 57.358 40.909 0.00 0.00 43.61 3.71
351 352 5.196341 TGTGTATTATCGGCTCTTCGATT 57.804 39.130 5.09 0.00 46.23 3.34
352 353 5.597806 TGTGTATTATCGGCTCTTCGATTT 58.402 37.500 5.09 0.00 46.23 2.17
353 354 5.690409 TGTGTATTATCGGCTCTTCGATTTC 59.310 40.000 5.09 0.00 46.23 2.17
354 355 5.690409 GTGTATTATCGGCTCTTCGATTTCA 59.310 40.000 5.09 0.00 46.23 2.69
355 356 6.366332 GTGTATTATCGGCTCTTCGATTTCAT 59.634 38.462 5.09 0.00 46.23 2.57
356 357 5.852738 ATTATCGGCTCTTCGATTTCATG 57.147 39.130 5.09 0.00 46.23 3.07
357 358 2.672961 TCGGCTCTTCGATTTCATGT 57.327 45.000 0.00 0.00 33.92 3.21
358 359 2.270923 TCGGCTCTTCGATTTCATGTG 58.729 47.619 0.00 0.00 33.92 3.21
359 360 2.094234 TCGGCTCTTCGATTTCATGTGA 60.094 45.455 0.00 0.00 33.92 3.58
360 361 2.868583 CGGCTCTTCGATTTCATGTGAT 59.131 45.455 0.00 0.00 0.00 3.06
361 362 3.310774 CGGCTCTTCGATTTCATGTGATT 59.689 43.478 0.00 0.00 0.00 2.57
362 363 4.507756 CGGCTCTTCGATTTCATGTGATTA 59.492 41.667 0.00 0.00 0.00 1.75
363 364 5.178252 CGGCTCTTCGATTTCATGTGATTAT 59.822 40.000 0.00 0.00 0.00 1.28
364 365 6.369005 GGCTCTTCGATTTCATGTGATTATG 58.631 40.000 0.00 0.00 0.00 1.90
365 366 5.850128 GCTCTTCGATTTCATGTGATTATGC 59.150 40.000 0.00 0.00 0.00 3.14
366 367 6.304356 TCTTCGATTTCATGTGATTATGCC 57.696 37.500 0.00 0.00 0.00 4.40
367 368 5.821995 TCTTCGATTTCATGTGATTATGCCA 59.178 36.000 0.00 0.00 0.00 4.92
368 369 5.678132 TCGATTTCATGTGATTATGCCAG 57.322 39.130 0.00 0.00 0.00 4.85
369 370 5.367302 TCGATTTCATGTGATTATGCCAGA 58.633 37.500 0.00 0.00 0.00 3.86
370 371 5.999600 TCGATTTCATGTGATTATGCCAGAT 59.000 36.000 0.00 0.00 0.00 2.90
371 372 6.072893 TCGATTTCATGTGATTATGCCAGATG 60.073 38.462 0.00 0.00 36.85 2.90
372 373 6.293790 CGATTTCATGTGATTATGCCAGATGT 60.294 38.462 0.00 0.00 36.85 3.06
373 374 6.381481 TTTCATGTGATTATGCCAGATGTC 57.619 37.500 0.00 0.00 36.85 3.06
374 375 5.038651 TCATGTGATTATGCCAGATGTCA 57.961 39.130 0.00 0.00 36.85 3.58
375 376 5.627135 TCATGTGATTATGCCAGATGTCAT 58.373 37.500 0.00 0.00 36.85 3.06
376 377 6.771573 TCATGTGATTATGCCAGATGTCATA 58.228 36.000 0.00 0.00 36.85 2.15
377 378 6.652062 TCATGTGATTATGCCAGATGTCATAC 59.348 38.462 0.00 0.00 36.85 2.39
378 379 5.927819 TGTGATTATGCCAGATGTCATACA 58.072 37.500 0.00 0.00 0.00 2.29
379 380 6.536447 TGTGATTATGCCAGATGTCATACAT 58.464 36.000 0.00 0.00 42.43 2.29
380 381 6.999871 TGTGATTATGCCAGATGTCATACATT 59.000 34.615 0.00 0.00 39.27 2.71
381 382 8.156165 TGTGATTATGCCAGATGTCATACATTA 58.844 33.333 0.00 0.00 39.27 1.90
382 383 8.446273 GTGATTATGCCAGATGTCATACATTAC 58.554 37.037 0.00 0.00 39.27 1.89
383 384 8.377799 TGATTATGCCAGATGTCATACATTACT 58.622 33.333 0.00 0.00 39.27 2.24
384 385 9.224267 GATTATGCCAGATGTCATACATTACTT 57.776 33.333 0.00 0.00 39.27 2.24
387 388 7.786178 TGCCAGATGTCATACATTACTTAAC 57.214 36.000 0.00 0.00 39.27 2.01
388 389 7.334858 TGCCAGATGTCATACATTACTTAACA 58.665 34.615 0.00 0.00 39.27 2.41
389 390 7.826744 TGCCAGATGTCATACATTACTTAACAA 59.173 33.333 0.00 0.00 39.27 2.83
390 391 8.840321 GCCAGATGTCATACATTACTTAACAAT 58.160 33.333 0.00 0.00 39.27 2.71
406 407 8.574196 ACTTAACAATACTGTTTTTGACATGC 57.426 30.769 0.00 0.00 43.45 4.06
407 408 8.413229 ACTTAACAATACTGTTTTTGACATGCT 58.587 29.630 0.00 0.00 43.45 3.79
408 409 9.891828 CTTAACAATACTGTTTTTGACATGCTA 57.108 29.630 0.00 0.00 43.45 3.49
410 411 8.746922 AACAATACTGTTTTTGACATGCTATG 57.253 30.769 9.33 0.00 43.45 2.23
411 412 6.808212 ACAATACTGTTTTTGACATGCTATGC 59.192 34.615 9.33 0.00 37.69 3.14
412 413 4.852134 ACTGTTTTTGACATGCTATGCA 57.148 36.364 0.00 0.00 44.86 3.96
442 443 4.853924 AAAAATGTTCAGGATGCTTCGT 57.146 36.364 0.00 0.00 34.76 3.85
443 444 5.957842 AAAAATGTTCAGGATGCTTCGTA 57.042 34.783 0.00 0.00 34.76 3.43
444 445 4.946784 AAATGTTCAGGATGCTTCGTAC 57.053 40.909 0.00 0.00 34.76 3.67
445 446 3.895232 ATGTTCAGGATGCTTCGTACT 57.105 42.857 0.00 0.00 34.76 2.73
446 447 3.678056 TGTTCAGGATGCTTCGTACTT 57.322 42.857 0.00 0.00 34.76 2.24
447 448 4.002906 TGTTCAGGATGCTTCGTACTTT 57.997 40.909 0.00 0.00 34.76 2.66
448 449 4.385825 TGTTCAGGATGCTTCGTACTTTT 58.614 39.130 0.00 0.00 34.76 2.27
449 450 4.819630 TGTTCAGGATGCTTCGTACTTTTT 59.180 37.500 0.00 0.00 34.76 1.94
450 451 5.992829 TGTTCAGGATGCTTCGTACTTTTTA 59.007 36.000 0.00 0.00 34.76 1.52
451 452 6.653320 TGTTCAGGATGCTTCGTACTTTTTAT 59.347 34.615 0.00 0.00 34.76 1.40
452 453 6.662414 TCAGGATGCTTCGTACTTTTTATG 57.338 37.500 0.00 0.00 34.76 1.90
453 454 6.403049 TCAGGATGCTTCGTACTTTTTATGA 58.597 36.000 0.00 0.00 34.76 2.15
454 455 6.876789 TCAGGATGCTTCGTACTTTTTATGAA 59.123 34.615 0.00 0.00 34.76 2.57
455 456 6.961554 CAGGATGCTTCGTACTTTTTATGAAC 59.038 38.462 0.00 0.00 0.00 3.18
456 457 6.653320 AGGATGCTTCGTACTTTTTATGAACA 59.347 34.615 0.00 0.00 0.00 3.18
457 458 7.336931 AGGATGCTTCGTACTTTTTATGAACAT 59.663 33.333 0.00 0.00 0.00 2.71
458 459 8.609176 GGATGCTTCGTACTTTTTATGAACATA 58.391 33.333 0.00 0.00 0.00 2.29
459 460 9.982291 GATGCTTCGTACTTTTTATGAACATAA 57.018 29.630 3.52 3.52 0.00 1.90
514 515 8.772250 AGACCAGAGTTATTATTCCTCAAATCA 58.228 33.333 0.00 0.00 0.00 2.57
515 516 9.396022 GACCAGAGTTATTATTCCTCAAATCAA 57.604 33.333 0.00 0.00 0.00 2.57
516 517 9.753674 ACCAGAGTTATTATTCCTCAAATCAAA 57.246 29.630 0.00 0.00 0.00 2.69
1065 1072 2.671070 CACAAGGCCATCGAGGGT 59.329 61.111 18.73 0.00 38.09 4.34
1137 1144 1.678970 GGAAGCCCGCAATTCCACT 60.679 57.895 3.50 0.00 43.75 4.00
1277 1287 6.639632 TTATCCTTATGGCATTTCTTCTGC 57.360 37.500 4.78 0.00 38.93 4.26
1287 1298 3.786818 GCATTTCTTCTGCGTGATGTAGC 60.787 47.826 0.00 0.00 0.00 3.58
1324 1335 4.398358 GTGCTAGTTTTGAGGGGAATTACC 59.602 45.833 0.00 0.00 38.08 2.85
1325 1336 3.626217 GCTAGTTTTGAGGGGAATTACCG 59.374 47.826 0.00 0.00 40.11 4.02
1406 1421 5.117584 CACTAAGAGCGGAGACTAAGTAGA 58.882 45.833 0.00 0.00 0.00 2.59
1441 1466 9.167311 CTATCTGTTAAATAGCCCAATATGGAC 57.833 37.037 0.00 0.00 40.96 4.02
1443 1468 7.582719 TCTGTTAAATAGCCCAATATGGACTT 58.417 34.615 0.00 0.00 40.96 3.01
1444 1469 8.058847 TCTGTTAAATAGCCCAATATGGACTTT 58.941 33.333 0.00 0.00 40.96 2.66
1504 1529 4.611367 AGCAGGTGTACATAGGTAGAGTT 58.389 43.478 0.00 0.00 0.00 3.01
1528 1553 4.591072 AGCTGTTTCTCTTCTACTCCTTGT 59.409 41.667 0.00 0.00 0.00 3.16
1578 1603 6.403878 ACTAACATAATGGACTGCTTAACGT 58.596 36.000 0.00 0.00 0.00 3.99
1627 1652 0.746659 GGCTGTTTCTGTTGCTTGGT 59.253 50.000 0.00 0.00 0.00 3.67
1775 1800 3.524014 TGCAACCAGGCAACACAG 58.476 55.556 0.00 0.00 41.65 3.66
1906 1931 0.833834 CTCCGCCTGATATGGAGGGT 60.834 60.000 3.65 0.00 45.47 4.34
1950 1975 5.653255 ATATCTTTGACATGCCCTTACCT 57.347 39.130 0.00 0.00 0.00 3.08
1968 1993 0.802494 CTATGGTTGGTTGCGTGACC 59.198 55.000 2.79 2.79 40.23 4.02
2248 2275 8.412456 TGCTAATTTCTTGAGTGAAATGACAAA 58.588 29.630 3.67 0.00 43.40 2.83
2276 2303 4.777463 AGTGTTTGCTTAGTGGTTGTACT 58.223 39.130 0.00 0.00 34.71 2.73
2279 2306 2.178912 TGCTTAGTGGTTGTACTGCC 57.821 50.000 0.00 0.00 32.19 4.85
2428 2457 8.592809 TGCCTACTAAACCATCATTTGATTTTT 58.407 29.630 0.00 0.00 31.21 1.94
2450 2479 9.771534 TTTTTCTTTTCTCAGTTTCCAAGAAAA 57.228 25.926 11.67 11.67 43.43 2.29
2891 2928 1.518133 GCCAGAGACTGCTACTGCG 60.518 63.158 0.00 0.00 43.34 5.18
3281 3318 3.592898 AGACATAGATCACGTGTTGCA 57.407 42.857 16.51 0.00 0.00 4.08
3429 3466 9.962783 CTGTAGATATAGTTTACAAGGTACCAC 57.037 37.037 15.94 1.77 0.00 4.16
3465 3502 1.291877 GAGGAGCATTGCACGTCGTT 61.292 55.000 11.91 0.00 0.00 3.85
3524 3561 5.186992 TCTCGATGTTCTCATGTTCCCTTTA 59.813 40.000 0.00 0.00 34.06 1.85
3743 3792 1.655325 CGTACAAACTTTCCGTGCACG 60.655 52.381 31.77 31.77 39.44 5.34
3858 3915 0.524862 CCAGCTAACCGTAGTCGTGT 59.475 55.000 0.00 0.00 35.01 4.49
3962 4019 5.977635 TGAGTGGGAATGACAGTATTACAG 58.022 41.667 0.00 0.00 0.00 2.74
3971 4028 9.517609 GGAATGACAGTATTACAGTGTTACTAG 57.482 37.037 0.00 2.68 41.06 2.57
4008 5502 3.881688 CTGATGCTTTGTAGATCCCTTGG 59.118 47.826 0.00 0.00 0.00 3.61
4022 5516 4.150897 TCCCTTGGTTGCATACTATCAC 57.849 45.455 0.00 0.00 0.00 3.06
4032 5526 5.728637 TGCATACTATCACTACCAGATGG 57.271 43.478 0.00 0.00 42.17 3.51
4049 5543 5.345702 CAGATGGTACCAATGAATTTGCAG 58.654 41.667 20.76 0.00 33.73 4.41
4326 5820 5.062308 GCTAGTCGAGGTTTTGTATGTCTTG 59.938 44.000 0.00 0.00 0.00 3.02
4327 5821 3.746492 AGTCGAGGTTTTGTATGTCTTGC 59.254 43.478 0.00 0.00 0.00 4.01
4362 5858 2.293122 TGGCAGTTGTTGTAGTTCATGC 59.707 45.455 0.00 0.00 0.00 4.06
4451 5947 8.981647 CGAAATCAAATTCAGAAAATGGTCTTT 58.018 29.630 0.00 0.00 0.00 2.52
4506 6029 3.851976 ATCTTACACTGACGAGGTGTC 57.148 47.619 13.68 0.00 45.23 3.67
4669 6193 5.297029 GGCTGTAATCCACCAGTTCTAATTC 59.703 44.000 0.00 0.00 0.00 2.17
4698 6224 4.161377 GGTACAGAGAGGAGAAAGAAGCAT 59.839 45.833 0.00 0.00 0.00 3.79
4739 6265 5.567037 TGGATGATGGAATAAAGACCGAT 57.433 39.130 0.00 0.00 0.00 4.18
4819 6345 2.289565 CGGAAGCTTAACCATTCCCTC 58.710 52.381 0.00 0.00 39.50 4.30
4821 6347 2.656002 GAAGCTTAACCATTCCCTCCC 58.344 52.381 0.00 0.00 0.00 4.30
4823 6349 2.288525 AGCTTAACCATTCCCTCCCTT 58.711 47.619 0.00 0.00 0.00 3.95
4824 6350 3.470868 AGCTTAACCATTCCCTCCCTTA 58.529 45.455 0.00 0.00 0.00 2.69
4825 6351 3.202373 AGCTTAACCATTCCCTCCCTTAC 59.798 47.826 0.00 0.00 0.00 2.34
4826 6352 3.053917 GCTTAACCATTCCCTCCCTTACA 60.054 47.826 0.00 0.00 0.00 2.41
4827 6353 4.386424 GCTTAACCATTCCCTCCCTTACAT 60.386 45.833 0.00 0.00 0.00 2.29
4829 6355 3.151542 ACCATTCCCTCCCTTACATCT 57.848 47.619 0.00 0.00 0.00 2.90
4831 6357 3.048600 CCATTCCCTCCCTTACATCTGA 58.951 50.000 0.00 0.00 0.00 3.27
4832 6358 3.072184 CCATTCCCTCCCTTACATCTGAG 59.928 52.174 0.00 0.00 0.00 3.35
4833 6359 1.794714 TCCCTCCCTTACATCTGAGC 58.205 55.000 0.00 0.00 0.00 4.26
4837 6363 2.364970 CCTCCCTTACATCTGAGCAGAG 59.635 54.545 6.34 1.73 41.33 3.35
4839 6365 1.483827 CCCTTACATCTGAGCAGAGCA 59.516 52.381 6.34 0.00 41.33 4.26
4841 6367 2.483363 CCTTACATCTGAGCAGAGCAGG 60.483 54.545 6.34 4.90 41.33 4.85
4842 6368 0.463204 TACATCTGAGCAGAGCAGGC 59.537 55.000 6.34 0.00 41.33 4.85
4843 6369 1.883544 CATCTGAGCAGAGCAGGCG 60.884 63.158 6.34 0.00 41.33 5.52
5042 6568 0.673022 CTCAAGCTGGTCAGTGCTCC 60.673 60.000 0.00 0.00 38.75 4.70
5043 6569 2.031516 CAAGCTGGTCAGTGCTCCG 61.032 63.158 0.00 0.00 38.75 4.63
5046 6572 1.185618 AGCTGGTCAGTGCTCCGTAA 61.186 55.000 0.00 0.00 33.90 3.18
5055 6581 1.137513 GTGCTCCGTAATCCGTATGC 58.862 55.000 0.00 0.00 33.66 3.14
5062 6588 2.349275 CCGTAATCCGTATGCGTTTGTT 59.651 45.455 1.69 0.00 36.15 2.83
5063 6589 3.551082 CCGTAATCCGTATGCGTTTGTTA 59.449 43.478 1.69 0.00 36.15 2.41
5067 6620 2.067766 TCCGTATGCGTTTGTTACACC 58.932 47.619 1.69 0.00 36.15 4.16
5074 6627 1.855513 CGTTTGTTACACCTGGACGA 58.144 50.000 0.00 0.00 0.00 4.20
5081 6634 0.246360 TACACCTGGACGAGTGCATG 59.754 55.000 0.00 0.00 37.51 4.06
5166 6720 1.272147 GGTTGATGCAGGAAGAACCCT 60.272 52.381 0.00 0.00 40.05 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.135348 TGGATTAGAAGGCATGAGACCAG 59.865 47.826 0.00 0.00 0.00 4.00
1 2 3.114606 TGGATTAGAAGGCATGAGACCA 58.885 45.455 0.00 0.00 0.00 4.02
2 3 3.135530 ACTGGATTAGAAGGCATGAGACC 59.864 47.826 0.00 0.00 0.00 3.85
3 4 4.414337 ACTGGATTAGAAGGCATGAGAC 57.586 45.455 0.00 0.00 0.00 3.36
4 5 4.225942 ACAACTGGATTAGAAGGCATGAGA 59.774 41.667 0.00 0.00 0.00 3.27
5 6 4.521146 ACAACTGGATTAGAAGGCATGAG 58.479 43.478 0.00 0.00 0.00 2.90
6 7 4.574674 ACAACTGGATTAGAAGGCATGA 57.425 40.909 0.00 0.00 0.00 3.07
7 8 6.238842 CCATAACAACTGGATTAGAAGGCATG 60.239 42.308 0.00 0.00 35.70 4.06
8 9 5.829924 CCATAACAACTGGATTAGAAGGCAT 59.170 40.000 0.00 0.00 35.70 4.40
9 10 5.045213 TCCATAACAACTGGATTAGAAGGCA 60.045 40.000 0.00 0.00 37.87 4.75
10 11 5.437060 TCCATAACAACTGGATTAGAAGGC 58.563 41.667 0.00 0.00 37.87 4.35
19 20 2.567862 TCCCCATCCATAACAACTGGA 58.432 47.619 0.00 0.00 46.45 3.86
20 21 3.225104 CATCCCCATCCATAACAACTGG 58.775 50.000 0.00 0.00 34.93 4.00
21 22 3.225104 CCATCCCCATCCATAACAACTG 58.775 50.000 0.00 0.00 0.00 3.16
22 23 2.858768 ACCATCCCCATCCATAACAACT 59.141 45.455 0.00 0.00 0.00 3.16
23 24 2.958355 CACCATCCCCATCCATAACAAC 59.042 50.000 0.00 0.00 0.00 3.32
24 25 2.855599 TCACCATCCCCATCCATAACAA 59.144 45.455 0.00 0.00 0.00 2.83
25 26 2.442878 CTCACCATCCCCATCCATAACA 59.557 50.000 0.00 0.00 0.00 2.41
26 27 2.224867 CCTCACCATCCCCATCCATAAC 60.225 54.545 0.00 0.00 0.00 1.89
27 28 2.065007 CCTCACCATCCCCATCCATAA 58.935 52.381 0.00 0.00 0.00 1.90
28 29 1.746157 CCTCACCATCCCCATCCATA 58.254 55.000 0.00 0.00 0.00 2.74
29 30 1.723128 GCCTCACCATCCCCATCCAT 61.723 60.000 0.00 0.00 0.00 3.41
30 31 2.386100 GCCTCACCATCCCCATCCA 61.386 63.158 0.00 0.00 0.00 3.41
31 32 2.517919 GCCTCACCATCCCCATCC 59.482 66.667 0.00 0.00 0.00 3.51
32 33 2.111878 CGCCTCACCATCCCCATC 59.888 66.667 0.00 0.00 0.00 3.51
33 34 4.195334 GCGCCTCACCATCCCCAT 62.195 66.667 0.00 0.00 0.00 4.00
35 36 3.721370 ATTGCGCCTCACCATCCCC 62.721 63.158 4.18 0.00 0.00 4.81
36 37 2.124151 ATTGCGCCTCACCATCCC 60.124 61.111 4.18 0.00 0.00 3.85
37 38 2.484062 CCATTGCGCCTCACCATCC 61.484 63.158 4.18 0.00 0.00 3.51
38 39 3.113745 CCATTGCGCCTCACCATC 58.886 61.111 4.18 0.00 0.00 3.51
39 40 3.142838 GCCATTGCGCCTCACCAT 61.143 61.111 4.18 0.00 0.00 3.55
40 41 4.349503 AGCCATTGCGCCTCACCA 62.350 61.111 4.18 0.00 44.33 4.17
41 42 3.818787 CAGCCATTGCGCCTCACC 61.819 66.667 4.18 0.00 44.33 4.02
42 43 4.487412 GCAGCCATTGCGCCTCAC 62.487 66.667 4.18 0.00 44.09 3.51
50 51 2.141517 CCTATTCTCGAGCAGCCATTG 58.858 52.381 7.81 0.00 0.00 2.82
51 52 1.765314 ACCTATTCTCGAGCAGCCATT 59.235 47.619 7.81 0.00 0.00 3.16
52 53 1.069823 CACCTATTCTCGAGCAGCCAT 59.930 52.381 7.81 0.00 0.00 4.40
53 54 0.461548 CACCTATTCTCGAGCAGCCA 59.538 55.000 7.81 0.00 0.00 4.75
54 55 0.747255 TCACCTATTCTCGAGCAGCC 59.253 55.000 7.81 0.00 0.00 4.85
55 56 2.402305 CATCACCTATTCTCGAGCAGC 58.598 52.381 7.81 0.00 0.00 5.25
56 57 2.363680 ACCATCACCTATTCTCGAGCAG 59.636 50.000 7.81 4.59 0.00 4.24
57 58 2.101415 CACCATCACCTATTCTCGAGCA 59.899 50.000 7.81 0.00 0.00 4.26
58 59 2.101582 ACACCATCACCTATTCTCGAGC 59.898 50.000 7.81 0.00 0.00 5.03
59 60 4.115516 CAACACCATCACCTATTCTCGAG 58.884 47.826 5.93 5.93 0.00 4.04
60 61 3.118775 CCAACACCATCACCTATTCTCGA 60.119 47.826 0.00 0.00 0.00 4.04
61 62 3.118775 TCCAACACCATCACCTATTCTCG 60.119 47.826 0.00 0.00 0.00 4.04
62 63 4.446371 CTCCAACACCATCACCTATTCTC 58.554 47.826 0.00 0.00 0.00 2.87
63 64 3.200825 CCTCCAACACCATCACCTATTCT 59.799 47.826 0.00 0.00 0.00 2.40
64 65 3.199946 TCCTCCAACACCATCACCTATTC 59.800 47.826 0.00 0.00 0.00 1.75
65 66 3.189606 TCCTCCAACACCATCACCTATT 58.810 45.455 0.00 0.00 0.00 1.73
66 67 2.774234 CTCCTCCAACACCATCACCTAT 59.226 50.000 0.00 0.00 0.00 2.57
67 68 2.187958 CTCCTCCAACACCATCACCTA 58.812 52.381 0.00 0.00 0.00 3.08
68 69 0.987294 CTCCTCCAACACCATCACCT 59.013 55.000 0.00 0.00 0.00 4.00
69 70 0.035056 CCTCCTCCAACACCATCACC 60.035 60.000 0.00 0.00 0.00 4.02
70 71 0.984230 TCCTCCTCCAACACCATCAC 59.016 55.000 0.00 0.00 0.00 3.06
71 72 1.279496 CTCCTCCTCCAACACCATCA 58.721 55.000 0.00 0.00 0.00 3.07
72 73 0.543749 CCTCCTCCTCCAACACCATC 59.456 60.000 0.00 0.00 0.00 3.51
73 74 0.119155 TCCTCCTCCTCCAACACCAT 59.881 55.000 0.00 0.00 0.00 3.55
74 75 0.104672 TTCCTCCTCCTCCAACACCA 60.105 55.000 0.00 0.00 0.00 4.17
75 76 0.615850 CTTCCTCCTCCTCCAACACC 59.384 60.000 0.00 0.00 0.00 4.16
76 77 1.353091 ACTTCCTCCTCCTCCAACAC 58.647 55.000 0.00 0.00 0.00 3.32
77 78 2.382305 TCTACTTCCTCCTCCTCCAACA 59.618 50.000 0.00 0.00 0.00 3.33
78 79 2.761767 GTCTACTTCCTCCTCCTCCAAC 59.238 54.545 0.00 0.00 0.00 3.77
79 80 2.382305 TGTCTACTTCCTCCTCCTCCAA 59.618 50.000 0.00 0.00 0.00 3.53
80 81 2.000803 TGTCTACTTCCTCCTCCTCCA 58.999 52.381 0.00 0.00 0.00 3.86
81 82 2.761767 GTTGTCTACTTCCTCCTCCTCC 59.238 54.545 0.00 0.00 0.00 4.30
82 83 2.761767 GGTTGTCTACTTCCTCCTCCTC 59.238 54.545 0.00 0.00 0.00 3.71
83 84 2.560158 GGGTTGTCTACTTCCTCCTCCT 60.560 54.545 0.00 0.00 0.00 3.69
84 85 1.832366 GGGTTGTCTACTTCCTCCTCC 59.168 57.143 0.00 0.00 0.00 4.30
85 86 2.822697 AGGGTTGTCTACTTCCTCCTC 58.177 52.381 0.00 0.00 0.00 3.71
86 87 4.095211 GTTAGGGTTGTCTACTTCCTCCT 58.905 47.826 0.00 0.00 0.00 3.69
87 88 4.081586 CAGTTAGGGTTGTCTACTTCCTCC 60.082 50.000 0.00 0.00 0.00 4.30
88 89 4.527427 ACAGTTAGGGTTGTCTACTTCCTC 59.473 45.833 0.00 0.00 0.00 3.71
89 90 4.490706 ACAGTTAGGGTTGTCTACTTCCT 58.509 43.478 0.00 0.00 0.00 3.36
90 91 4.886496 ACAGTTAGGGTTGTCTACTTCC 57.114 45.455 0.00 0.00 0.00 3.46
91 92 6.162079 GGTAACAGTTAGGGTTGTCTACTTC 58.838 44.000 0.00 0.00 0.00 3.01
92 93 5.012458 GGGTAACAGTTAGGGTTGTCTACTT 59.988 44.000 0.00 0.00 39.74 2.24
93 94 4.529769 GGGTAACAGTTAGGGTTGTCTACT 59.470 45.833 0.00 0.00 39.74 2.57
94 95 4.323028 GGGGTAACAGTTAGGGTTGTCTAC 60.323 50.000 0.00 0.00 39.74 2.59
95 96 3.840078 GGGGTAACAGTTAGGGTTGTCTA 59.160 47.826 0.00 0.00 39.74 2.59
96 97 2.641321 GGGGTAACAGTTAGGGTTGTCT 59.359 50.000 0.00 0.00 39.74 3.41
97 98 2.641321 AGGGGTAACAGTTAGGGTTGTC 59.359 50.000 0.00 0.00 39.74 3.18
98 99 2.641321 GAGGGGTAACAGTTAGGGTTGT 59.359 50.000 0.00 0.00 39.74 3.32
99 100 2.026542 GGAGGGGTAACAGTTAGGGTTG 60.027 54.545 0.00 0.00 39.74 3.77
100 101 2.272698 GGAGGGGTAACAGTTAGGGTT 58.727 52.381 0.00 0.00 39.74 4.11
101 102 1.898542 CGGAGGGGTAACAGTTAGGGT 60.899 57.143 0.00 0.00 39.74 4.34
102 103 0.828677 CGGAGGGGTAACAGTTAGGG 59.171 60.000 0.00 0.00 39.74 3.53
103 104 1.565067 ACGGAGGGGTAACAGTTAGG 58.435 55.000 0.00 0.00 39.74 2.69
104 105 2.416431 CGAACGGAGGGGTAACAGTTAG 60.416 54.545 0.00 0.00 39.74 2.34
105 106 1.545582 CGAACGGAGGGGTAACAGTTA 59.454 52.381 0.00 0.00 39.74 2.24
106 107 0.319405 CGAACGGAGGGGTAACAGTT 59.681 55.000 0.00 0.00 39.74 3.16
107 108 1.538687 CCGAACGGAGGGGTAACAGT 61.539 60.000 7.53 0.00 37.50 3.55
108 109 1.217244 CCGAACGGAGGGGTAACAG 59.783 63.158 7.53 0.00 37.50 3.16
109 110 0.831288 TTCCGAACGGAGGGGTAACA 60.831 55.000 15.34 0.00 46.06 2.41
110 111 0.321346 TTTCCGAACGGAGGGGTAAC 59.679 55.000 15.34 0.00 46.06 2.50
111 112 1.278537 ATTTCCGAACGGAGGGGTAA 58.721 50.000 15.34 7.75 46.06 2.85
112 113 1.756538 GTATTTCCGAACGGAGGGGTA 59.243 52.381 15.34 5.70 46.06 3.69
113 114 0.538584 GTATTTCCGAACGGAGGGGT 59.461 55.000 15.34 6.54 46.06 4.95
114 115 0.828677 AGTATTTCCGAACGGAGGGG 59.171 55.000 15.34 0.00 46.06 4.79
115 116 2.277084 CAAGTATTTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
116 117 2.928116 GACAAGTATTTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
117 118 3.581755 TGACAAGTATTTCCGAACGGAG 58.418 45.455 15.34 5.60 46.06 4.63
118 119 3.663995 TGACAAGTATTTCCGAACGGA 57.336 42.857 12.04 12.04 43.52 4.69
119 120 3.930229 TGATGACAAGTATTTCCGAACGG 59.070 43.478 6.94 6.94 0.00 4.44
120 121 5.524511 TTGATGACAAGTATTTCCGAACG 57.475 39.130 0.00 0.00 0.00 3.95
121 122 9.834628 TTATTTTGATGACAAGTATTTCCGAAC 57.165 29.630 0.00 0.00 37.32 3.95
177 178 9.225682 TGGATAAAAAGGGATGTATCTAGAACT 57.774 33.333 0.00 0.00 0.00 3.01
183 184 9.713684 TCAAAATGGATAAAAAGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
207 208 9.632807 CCCTTCGTTTGAAAATATTTGTTATCA 57.367 29.630 0.39 0.00 32.66 2.15
208 209 9.849166 TCCCTTCGTTTGAAAATATTTGTTATC 57.151 29.630 0.39 0.00 32.66 1.75
209 210 9.855021 CTCCCTTCGTTTGAAAATATTTGTTAT 57.145 29.630 0.39 0.00 32.66 1.89
210 211 8.852135 ACTCCCTTCGTTTGAAAATATTTGTTA 58.148 29.630 0.39 0.00 32.66 2.41
211 212 7.722363 ACTCCCTTCGTTTGAAAATATTTGTT 58.278 30.769 0.39 0.00 32.66 2.83
212 213 7.284919 ACTCCCTTCGTTTGAAAATATTTGT 57.715 32.000 0.39 0.00 32.66 2.83
213 214 8.293867 TGTACTCCCTTCGTTTGAAAATATTTG 58.706 33.333 0.39 0.00 32.66 2.32
214 215 8.398878 TGTACTCCCTTCGTTTGAAAATATTT 57.601 30.769 0.00 0.00 32.66 1.40
215 216 7.989416 TGTACTCCCTTCGTTTGAAAATATT 57.011 32.000 0.00 0.00 32.66 1.28
216 217 7.120726 CCTTGTACTCCCTTCGTTTGAAAATAT 59.879 37.037 0.00 0.00 32.66 1.28
217 218 6.428771 CCTTGTACTCCCTTCGTTTGAAAATA 59.571 38.462 0.00 0.00 32.66 1.40
218 219 5.240844 CCTTGTACTCCCTTCGTTTGAAAAT 59.759 40.000 0.00 0.00 32.66 1.82
219 220 4.577283 CCTTGTACTCCCTTCGTTTGAAAA 59.423 41.667 0.00 0.00 32.66 2.29
220 221 4.131596 CCTTGTACTCCCTTCGTTTGAAA 58.868 43.478 0.00 0.00 32.66 2.69
221 222 3.495453 CCCTTGTACTCCCTTCGTTTGAA 60.495 47.826 0.00 0.00 0.00 2.69
222 223 2.038033 CCCTTGTACTCCCTTCGTTTGA 59.962 50.000 0.00 0.00 0.00 2.69
223 224 2.038033 TCCCTTGTACTCCCTTCGTTTG 59.962 50.000 0.00 0.00 0.00 2.93
224 225 2.302157 CTCCCTTGTACTCCCTTCGTTT 59.698 50.000 0.00 0.00 0.00 3.60
225 226 1.900486 CTCCCTTGTACTCCCTTCGTT 59.100 52.381 0.00 0.00 0.00 3.85
226 227 1.076677 TCTCCCTTGTACTCCCTTCGT 59.923 52.381 0.00 0.00 0.00 3.85
227 228 1.751924 CTCTCCCTTGTACTCCCTTCG 59.248 57.143 0.00 0.00 0.00 3.79
228 229 1.483004 GCTCTCCCTTGTACTCCCTTC 59.517 57.143 0.00 0.00 0.00 3.46
229 230 1.203313 TGCTCTCCCTTGTACTCCCTT 60.203 52.381 0.00 0.00 0.00 3.95
230 231 0.413832 TGCTCTCCCTTGTACTCCCT 59.586 55.000 0.00 0.00 0.00 4.20
231 232 0.827368 CTGCTCTCCCTTGTACTCCC 59.173 60.000 0.00 0.00 0.00 4.30
232 233 1.205893 CACTGCTCTCCCTTGTACTCC 59.794 57.143 0.00 0.00 0.00 3.85
233 234 2.165437 CTCACTGCTCTCCCTTGTACTC 59.835 54.545 0.00 0.00 0.00 2.59
234 235 2.175202 CTCACTGCTCTCCCTTGTACT 58.825 52.381 0.00 0.00 0.00 2.73
235 236 1.404851 GCTCACTGCTCTCCCTTGTAC 60.405 57.143 0.00 0.00 38.95 2.90
236 237 0.898320 GCTCACTGCTCTCCCTTGTA 59.102 55.000 0.00 0.00 38.95 2.41
237 238 1.676384 GCTCACTGCTCTCCCTTGT 59.324 57.895 0.00 0.00 38.95 3.16
238 239 1.447489 CGCTCACTGCTCTCCCTTG 60.447 63.158 0.00 0.00 40.11 3.61
239 240 2.977178 CGCTCACTGCTCTCCCTT 59.023 61.111 0.00 0.00 40.11 3.95
240 241 3.768922 GCGCTCACTGCTCTCCCT 61.769 66.667 0.00 0.00 40.11 4.20
241 242 4.074526 TGCGCTCACTGCTCTCCC 62.075 66.667 9.73 0.00 40.11 4.30
242 243 2.813042 GTGCGCTCACTGCTCTCC 60.813 66.667 9.73 0.00 40.03 3.71
243 244 1.624865 CTTGTGCGCTCACTGCTCTC 61.625 60.000 12.40 0.00 43.49 3.20
244 245 1.667191 CTTGTGCGCTCACTGCTCT 60.667 57.895 12.40 0.00 43.49 4.09
245 246 0.667487 TACTTGTGCGCTCACTGCTC 60.667 55.000 12.40 0.00 43.49 4.26
246 247 0.668706 CTACTTGTGCGCTCACTGCT 60.669 55.000 12.40 0.00 43.49 4.24
247 248 1.630244 CCTACTTGTGCGCTCACTGC 61.630 60.000 12.40 0.00 43.49 4.40
248 249 0.038251 TCCTACTTGTGCGCTCACTG 60.038 55.000 12.40 10.51 43.49 3.66
249 250 0.679505 TTCCTACTTGTGCGCTCACT 59.320 50.000 12.40 2.90 43.49 3.41
250 251 1.508632 TTTCCTACTTGTGCGCTCAC 58.491 50.000 12.40 0.00 43.40 3.51
251 252 2.076100 CATTTCCTACTTGTGCGCTCA 58.924 47.619 9.73 8.97 0.00 4.26
252 253 2.076863 ACATTTCCTACTTGTGCGCTC 58.923 47.619 9.73 5.51 0.00 5.03
253 254 2.076863 GACATTTCCTACTTGTGCGCT 58.923 47.619 9.73 0.00 0.00 5.92
254 255 1.804151 TGACATTTCCTACTTGTGCGC 59.196 47.619 0.00 0.00 0.00 6.09
255 256 3.667960 GCTTGACATTTCCTACTTGTGCG 60.668 47.826 0.00 0.00 0.00 5.34
256 257 3.667960 CGCTTGACATTTCCTACTTGTGC 60.668 47.826 0.00 0.00 0.00 4.57
257 258 3.498397 ACGCTTGACATTTCCTACTTGTG 59.502 43.478 0.00 0.00 0.00 3.33
258 259 3.740115 ACGCTTGACATTTCCTACTTGT 58.260 40.909 0.00 0.00 0.00 3.16
259 260 3.745975 TGACGCTTGACATTTCCTACTTG 59.254 43.478 0.00 0.00 0.00 3.16
260 261 4.002906 TGACGCTTGACATTTCCTACTT 57.997 40.909 0.00 0.00 0.00 2.24
261 262 3.678056 TGACGCTTGACATTTCCTACT 57.322 42.857 0.00 0.00 0.00 2.57
262 263 3.000322 CGATGACGCTTGACATTTCCTAC 60.000 47.826 0.00 0.00 0.00 3.18
263 264 3.119280 TCGATGACGCTTGACATTTCCTA 60.119 43.478 0.00 0.00 39.58 2.94
264 265 2.002586 CGATGACGCTTGACATTTCCT 58.997 47.619 0.00 0.00 0.00 3.36
265 266 1.999735 TCGATGACGCTTGACATTTCC 59.000 47.619 0.00 0.00 39.58 3.13
266 267 3.722555 TTCGATGACGCTTGACATTTC 57.277 42.857 0.00 0.00 39.58 2.17
267 268 4.481930 TTTTCGATGACGCTTGACATTT 57.518 36.364 0.00 0.00 39.58 2.32
268 269 4.219033 GTTTTTCGATGACGCTTGACATT 58.781 39.130 0.00 0.00 39.58 2.71
269 270 3.249799 TGTTTTTCGATGACGCTTGACAT 59.750 39.130 0.00 0.00 39.58 3.06
270 271 2.609916 TGTTTTTCGATGACGCTTGACA 59.390 40.909 0.00 0.00 39.58 3.58
271 272 2.964768 GTGTTTTTCGATGACGCTTGAC 59.035 45.455 0.00 0.00 39.58 3.18
272 273 2.348125 CGTGTTTTTCGATGACGCTTGA 60.348 45.455 0.00 0.00 39.58 3.02
273 274 1.962547 CGTGTTTTTCGATGACGCTTG 59.037 47.619 0.00 0.00 39.58 4.01
274 275 1.595794 ACGTGTTTTTCGATGACGCTT 59.404 42.857 0.00 0.00 39.58 4.68
275 276 1.070843 CACGTGTTTTTCGATGACGCT 60.071 47.619 7.58 0.00 39.58 5.07
276 277 1.305482 CACGTGTTTTTCGATGACGC 58.695 50.000 7.58 0.00 39.58 5.19
277 278 1.305482 GCACGTGTTTTTCGATGACG 58.695 50.000 18.38 0.00 41.26 4.35
278 279 1.263217 AGGCACGTGTTTTTCGATGAC 59.737 47.619 18.38 0.00 0.00 3.06
279 280 1.588674 AGGCACGTGTTTTTCGATGA 58.411 45.000 18.38 0.00 0.00 2.92
280 281 2.043411 CAAGGCACGTGTTTTTCGATG 58.957 47.619 18.38 2.05 31.96 3.84
281 282 2.399396 CAAGGCACGTGTTTTTCGAT 57.601 45.000 18.38 0.00 31.96 3.59
282 283 3.907927 CAAGGCACGTGTTTTTCGA 57.092 47.368 18.38 0.00 31.96 3.71
290 291 2.602217 GCTAAACAAGACAAGGCACGTG 60.602 50.000 12.28 12.28 45.09 4.49
291 292 1.602377 GCTAAACAAGACAAGGCACGT 59.398 47.619 0.00 0.00 0.00 4.49
292 293 1.398451 CGCTAAACAAGACAAGGCACG 60.398 52.381 0.00 0.00 0.00 5.34
293 294 1.663161 GCGCTAAACAAGACAAGGCAC 60.663 52.381 0.00 0.00 0.00 5.01
294 295 0.591170 GCGCTAAACAAGACAAGGCA 59.409 50.000 0.00 0.00 0.00 4.75
295 296 0.109735 GGCGCTAAACAAGACAAGGC 60.110 55.000 7.64 0.00 0.00 4.35
296 297 1.197721 CTGGCGCTAAACAAGACAAGG 59.802 52.381 7.64 0.00 0.00 3.61
297 298 2.143122 TCTGGCGCTAAACAAGACAAG 58.857 47.619 7.64 0.00 0.00 3.16
298 299 2.143122 CTCTGGCGCTAAACAAGACAA 58.857 47.619 7.64 0.00 0.00 3.18
299 300 1.608025 CCTCTGGCGCTAAACAAGACA 60.608 52.381 7.64 0.00 0.00 3.41
300 301 1.079503 CCTCTGGCGCTAAACAAGAC 58.920 55.000 7.64 0.00 0.00 3.01
301 302 0.973632 TCCTCTGGCGCTAAACAAGA 59.026 50.000 7.64 0.46 0.00 3.02
302 303 1.734465 CTTCCTCTGGCGCTAAACAAG 59.266 52.381 7.64 0.00 0.00 3.16
303 304 1.346395 TCTTCCTCTGGCGCTAAACAA 59.654 47.619 7.64 0.00 0.00 2.83
304 305 0.973632 TCTTCCTCTGGCGCTAAACA 59.026 50.000 7.64 0.00 0.00 2.83
305 306 2.317530 ATCTTCCTCTGGCGCTAAAC 57.682 50.000 7.64 0.00 0.00 2.01
306 307 3.350219 AAATCTTCCTCTGGCGCTAAA 57.650 42.857 7.64 0.00 0.00 1.85
307 308 3.350219 AAAATCTTCCTCTGGCGCTAA 57.650 42.857 7.64 0.00 0.00 3.09
308 309 3.350219 AAAAATCTTCCTCTGGCGCTA 57.650 42.857 7.64 0.00 0.00 4.26
309 310 2.206576 AAAAATCTTCCTCTGGCGCT 57.793 45.000 7.64 0.00 0.00 5.92
325 326 5.870433 TCGAAGAGCCGATAATACACAAAAA 59.130 36.000 0.00 0.00 33.14 1.94
326 327 5.412640 TCGAAGAGCCGATAATACACAAAA 58.587 37.500 0.00 0.00 33.14 2.44
327 328 5.001237 TCGAAGAGCCGATAATACACAAA 57.999 39.130 0.00 0.00 33.14 2.83
328 329 4.642445 TCGAAGAGCCGATAATACACAA 57.358 40.909 0.00 0.00 33.14 3.33
329 330 4.848562 ATCGAAGAGCCGATAATACACA 57.151 40.909 0.00 0.00 46.16 3.72
338 339 2.094234 TCACATGAAATCGAAGAGCCGA 60.094 45.455 0.00 0.00 43.63 5.54
339 340 2.270923 TCACATGAAATCGAAGAGCCG 58.729 47.619 0.00 0.00 43.63 5.52
340 341 4.889832 AATCACATGAAATCGAAGAGCC 57.110 40.909 0.00 0.00 43.63 4.70
341 342 5.850128 GCATAATCACATGAAATCGAAGAGC 59.150 40.000 0.00 0.00 43.63 4.09
342 343 6.017687 TGGCATAATCACATGAAATCGAAGAG 60.018 38.462 0.00 0.00 43.63 2.85
343 344 5.821995 TGGCATAATCACATGAAATCGAAGA 59.178 36.000 0.00 0.00 45.75 2.87
344 345 6.017687 TCTGGCATAATCACATGAAATCGAAG 60.018 38.462 0.00 0.00 0.00 3.79
345 346 5.821995 TCTGGCATAATCACATGAAATCGAA 59.178 36.000 0.00 0.00 0.00 3.71
346 347 5.367302 TCTGGCATAATCACATGAAATCGA 58.633 37.500 0.00 0.00 0.00 3.59
347 348 5.678132 TCTGGCATAATCACATGAAATCG 57.322 39.130 0.00 0.00 0.00 3.34
348 349 6.978338 ACATCTGGCATAATCACATGAAATC 58.022 36.000 0.00 0.00 0.00 2.17
349 350 6.548251 TGACATCTGGCATAATCACATGAAAT 59.452 34.615 0.00 0.00 0.00 2.17
350 351 5.887035 TGACATCTGGCATAATCACATGAAA 59.113 36.000 0.00 0.00 0.00 2.69
351 352 5.438833 TGACATCTGGCATAATCACATGAA 58.561 37.500 0.00 0.00 0.00 2.57
352 353 5.038651 TGACATCTGGCATAATCACATGA 57.961 39.130 0.00 0.00 0.00 3.07
353 354 5.959618 ATGACATCTGGCATAATCACATG 57.040 39.130 0.00 0.00 43.16 3.21
354 355 6.536447 TGTATGACATCTGGCATAATCACAT 58.464 36.000 7.30 0.00 46.65 3.21
355 356 5.927819 TGTATGACATCTGGCATAATCACA 58.072 37.500 7.30 1.69 46.65 3.58
356 357 7.444629 AATGTATGACATCTGGCATAATCAC 57.555 36.000 7.30 0.00 46.65 3.06
357 358 8.377799 AGTAATGTATGACATCTGGCATAATCA 58.622 33.333 7.30 3.48 46.65 2.57
358 359 8.783833 AGTAATGTATGACATCTGGCATAATC 57.216 34.615 7.30 0.00 46.65 1.75
361 362 9.489084 GTTAAGTAATGTATGACATCTGGCATA 57.511 33.333 1.50 1.50 43.16 3.14
363 364 7.334858 TGTTAAGTAATGTATGACATCTGGCA 58.665 34.615 0.00 0.00 37.97 4.92
364 365 7.786178 TGTTAAGTAATGTATGACATCTGGC 57.214 36.000 0.00 0.00 37.97 4.85
380 381 9.672086 GCATGTCAAAAACAGTATTGTTAAGTA 57.328 29.630 3.82 0.00 46.54 2.24
381 382 8.413229 AGCATGTCAAAAACAGTATTGTTAAGT 58.587 29.630 3.82 0.00 46.54 2.24
382 383 8.801715 AGCATGTCAAAAACAGTATTGTTAAG 57.198 30.769 3.82 0.00 46.54 1.85
384 385 9.838975 CATAGCATGTCAAAAACAGTATTGTTA 57.161 29.630 3.82 0.00 46.54 2.41
386 387 6.808212 GCATAGCATGTCAAAAACAGTATTGT 59.192 34.615 0.00 0.00 42.37 2.71
387 388 6.807720 TGCATAGCATGTCAAAAACAGTATTG 59.192 34.615 0.00 0.00 42.37 1.90
388 389 6.923012 TGCATAGCATGTCAAAAACAGTATT 58.077 32.000 0.00 0.00 42.37 1.89
389 390 6.513806 TGCATAGCATGTCAAAAACAGTAT 57.486 33.333 0.00 0.00 42.37 2.12
390 391 5.956068 TGCATAGCATGTCAAAAACAGTA 57.044 34.783 0.00 0.00 42.37 2.74
391 392 4.852134 TGCATAGCATGTCAAAAACAGT 57.148 36.364 0.00 0.00 42.37 3.55
421 422 4.853924 ACGAAGCATCCTGAACATTTTT 57.146 36.364 0.00 0.00 0.00 1.94
422 423 5.003804 AGTACGAAGCATCCTGAACATTTT 58.996 37.500 0.00 0.00 0.00 1.82
423 424 4.579869 AGTACGAAGCATCCTGAACATTT 58.420 39.130 0.00 0.00 0.00 2.32
424 425 4.207891 AGTACGAAGCATCCTGAACATT 57.792 40.909 0.00 0.00 0.00 2.71
425 426 3.895232 AGTACGAAGCATCCTGAACAT 57.105 42.857 0.00 0.00 0.00 2.71
426 427 3.678056 AAGTACGAAGCATCCTGAACA 57.322 42.857 0.00 0.00 0.00 3.18
427 428 5.358298 AAAAAGTACGAAGCATCCTGAAC 57.642 39.130 0.00 0.00 0.00 3.18
428 429 6.876789 TCATAAAAAGTACGAAGCATCCTGAA 59.123 34.615 0.00 0.00 0.00 3.02
429 430 6.403049 TCATAAAAAGTACGAAGCATCCTGA 58.597 36.000 0.00 0.00 0.00 3.86
430 431 6.662414 TCATAAAAAGTACGAAGCATCCTG 57.338 37.500 0.00 0.00 0.00 3.86
431 432 6.653320 TGTTCATAAAAAGTACGAAGCATCCT 59.347 34.615 0.00 0.00 0.00 3.24
432 433 6.837992 TGTTCATAAAAAGTACGAAGCATCC 58.162 36.000 0.00 0.00 0.00 3.51
433 434 9.982291 TTATGTTCATAAAAAGTACGAAGCATC 57.018 29.630 3.18 0.00 0.00 3.91
488 489 8.772250 TGATTTGAGGAATAATAACTCTGGTCT 58.228 33.333 0.00 0.00 32.58 3.85
489 490 8.964476 TGATTTGAGGAATAATAACTCTGGTC 57.036 34.615 0.00 0.00 32.58 4.02
490 491 9.753674 TTTGATTTGAGGAATAATAACTCTGGT 57.246 29.630 0.00 0.00 32.58 4.00
950 957 3.200593 GTGGCTGCGGATGCTGAG 61.201 66.667 0.00 0.00 42.14 3.35
980 987 1.079127 CGCCGTTCCTTCTGACCAT 60.079 57.895 0.00 0.00 0.00 3.55
983 990 1.084370 CATCCGCCGTTCCTTCTGAC 61.084 60.000 0.00 0.00 0.00 3.51
986 993 1.961180 CTCCATCCGCCGTTCCTTCT 61.961 60.000 0.00 0.00 0.00 2.85
1230 1237 2.816718 ACGTACTTGTGGGCACGT 59.183 55.556 0.00 0.00 42.36 4.49
1277 1287 2.533266 AATAGCCAGGCTACATCACG 57.467 50.000 24.27 0.00 44.24 4.35
1316 1327 5.123979 GCCATAGGATTGATTCGGTAATTCC 59.876 44.000 0.00 0.00 0.00 3.01
1324 1335 3.679980 CGGTAAGCCATAGGATTGATTCG 59.320 47.826 0.00 0.00 31.96 3.34
1325 1336 4.642429 ACGGTAAGCCATAGGATTGATTC 58.358 43.478 0.00 0.00 31.96 2.52
1406 1421 7.371936 GGCTATTTAACAGATAGAGATCACGT 58.628 38.462 0.00 0.00 34.17 4.49
1441 1466 6.460676 GCCCTAAAGATGATCCATGTTGAAAG 60.461 42.308 0.00 0.00 27.89 2.62
1443 1468 4.889409 GCCCTAAAGATGATCCATGTTGAA 59.111 41.667 0.00 0.00 27.89 2.69
1444 1469 4.079844 TGCCCTAAAGATGATCCATGTTGA 60.080 41.667 0.00 0.00 27.89 3.18
1504 1529 5.775701 ACAAGGAGTAGAAGAGAAACAGCTA 59.224 40.000 0.00 0.00 0.00 3.32
1528 1553 5.369833 CCTCTAGTGTTTCCTCTAGATCGA 58.630 45.833 0.00 0.00 40.90 3.59
1578 1603 5.126869 ACATAAAATCCAATGTTGATCGCCA 59.873 36.000 0.00 0.00 32.43 5.69
1627 1652 3.969899 TCGTGCATTGCAATTGTTACAA 58.030 36.364 13.94 0.00 41.47 2.41
1742 1767 5.619220 TGGTTGCAATAGCTGGAAAATTTT 58.381 33.333 0.59 2.28 42.74 1.82
1775 1800 9.915629 AGTGAATATTATCTTCCGTGAACTATC 57.084 33.333 0.00 0.00 0.00 2.08
1950 1975 0.398696 AGGTCACGCAACCAACCATA 59.601 50.000 9.28 0.00 42.12 2.74
1968 1993 5.473504 ACAGCCAAGTAATTTCCTAACACAG 59.526 40.000 0.00 0.00 0.00 3.66
2248 2275 4.193865 ACCACTAAGCAAACACTTACGTT 58.806 39.130 0.00 0.00 0.00 3.99
2250 2277 4.034742 ACAACCACTAAGCAAACACTTACG 59.965 41.667 0.00 0.00 0.00 3.18
2276 2303 3.985019 TCACTCCTTTAATTACCGGCA 57.015 42.857 0.00 0.00 0.00 5.69
2279 2306 6.796705 AACAGTTCACTCCTTTAATTACCG 57.203 37.500 0.00 0.00 0.00 4.02
2428 2457 8.066612 ACATTTTCTTGGAAACTGAGAAAAGA 57.933 30.769 14.22 0.00 46.25 2.52
2450 2479 0.700564 AACTGTGGCCAGGATGACAT 59.299 50.000 5.11 0.00 43.36 3.06
2688 2725 3.866651 GCTCCAGCTTATCTCTGTTGAA 58.133 45.455 0.00 0.00 38.21 2.69
2689 2726 3.533606 GCTCCAGCTTATCTCTGTTGA 57.466 47.619 0.00 0.00 38.21 3.18
2891 2928 6.545504 TTTTCTTGTTCTACATGCTCAGAC 57.454 37.500 0.00 0.00 0.00 3.51
3281 3318 3.873801 GCATGACTCTGTTGTTATGGGGT 60.874 47.826 0.00 0.00 35.38 4.95
3429 3466 5.700832 TGCTCCTCATACTACAAAACAGTTG 59.299 40.000 0.00 0.00 0.00 3.16
3465 3502 5.697067 AGTTTTGTAATCCCACCTAACACA 58.303 37.500 0.00 0.00 0.00 3.72
3524 3561 9.347240 CTTGGATAGAAAGGATATCACAAATGT 57.653 33.333 4.83 0.00 32.32 2.71
3627 3676 7.397192 ACCAAGGCACATTTTAATTAGATCAGT 59.603 33.333 0.00 0.00 0.00 3.41
3690 3739 7.147742 TGTGTCATATATAAGTGCTTCACCAGA 60.148 37.037 0.00 0.00 34.49 3.86
3743 3792 3.140623 TCCCCAAGCGTTACAGTTTAAC 58.859 45.455 0.00 0.00 0.00 2.01
3858 3915 2.550277 TGAGGTGCCTCTCCTTATCA 57.450 50.000 17.96 0.00 43.12 2.15
4008 5502 5.928839 CCATCTGGTAGTGATAGTATGCAAC 59.071 44.000 0.00 0.00 0.00 4.17
4022 5516 6.460123 GCAAATTCATTGGTACCATCTGGTAG 60.460 42.308 17.17 4.28 43.84 3.18
4032 5526 3.193267 TCAGGCTGCAAATTCATTGGTAC 59.807 43.478 10.34 0.00 39.54 3.34
4038 5532 2.161855 TCGTTCAGGCTGCAAATTCAT 58.838 42.857 10.34 0.00 0.00 2.57
4049 5543 1.468914 GGGAGACAAAATCGTTCAGGC 59.531 52.381 0.00 0.00 0.00 4.85
4362 5858 1.078709 AGTTGCATGAACCGTGATCG 58.921 50.000 0.00 0.00 34.80 3.69
4506 6029 3.309138 CAGCAAATCAGTCGAGGATCAAG 59.691 47.826 0.00 0.00 33.17 3.02
4669 6193 2.382882 TCTCCTCTCTGTACCATGCTG 58.617 52.381 0.00 0.00 0.00 4.41
4711 6237 6.122277 GTCTTTATTCCATCATCCAACCAGA 58.878 40.000 0.00 0.00 0.00 3.86
4739 6265 1.726571 GCGCGGCGAAACTTTTTATCA 60.727 47.619 28.54 0.00 0.00 2.15
4819 6345 1.483827 TGCTCTGCTCAGATGTAAGGG 59.516 52.381 0.00 0.00 36.76 3.95
4821 6347 2.823984 CCTGCTCTGCTCAGATGTAAG 58.176 52.381 0.00 0.00 36.76 2.34
4823 6349 0.463204 GCCTGCTCTGCTCAGATGTA 59.537 55.000 0.00 0.00 36.76 2.29
4824 6350 1.221293 GCCTGCTCTGCTCAGATGT 59.779 57.895 0.00 0.00 36.76 3.06
4825 6351 1.883544 CGCCTGCTCTGCTCAGATG 60.884 63.158 0.00 0.00 36.76 2.90
4826 6352 1.611474 TTCGCCTGCTCTGCTCAGAT 61.611 55.000 0.00 0.00 36.76 2.90
4827 6353 1.820010 TTTCGCCTGCTCTGCTCAGA 61.820 55.000 0.00 0.00 33.54 3.27
4829 6355 0.952497 CTTTTCGCCTGCTCTGCTCA 60.952 55.000 0.00 0.00 0.00 4.26
4831 6357 1.673665 CCTTTTCGCCTGCTCTGCT 60.674 57.895 0.00 0.00 0.00 4.24
4832 6358 2.873288 CCTTTTCGCCTGCTCTGC 59.127 61.111 0.00 0.00 0.00 4.26
4833 6359 1.919956 CTGCCTTTTCGCCTGCTCTG 61.920 60.000 0.00 0.00 0.00 3.35
4837 6363 3.673484 TGCTGCCTTTTCGCCTGC 61.673 61.111 0.00 0.00 0.00 4.85
4839 6365 2.113986 AGTGCTGCCTTTTCGCCT 59.886 55.556 0.00 0.00 0.00 5.52
5042 6568 5.995133 GTGTAACAAACGCATACGGATTACG 60.995 44.000 0.00 0.00 42.69 3.18
5043 6569 5.250332 GTGTAACAAACGCATACGGATTAC 58.750 41.667 0.00 0.00 39.79 1.89
5046 6572 2.674357 GGTGTAACAAACGCATACGGAT 59.326 45.455 0.00 0.00 41.46 4.18
5055 6581 1.790623 CTCGTCCAGGTGTAACAAACG 59.209 52.381 0.00 0.00 39.98 3.60
5062 6588 0.246360 CATGCACTCGTCCAGGTGTA 59.754 55.000 0.00 0.00 36.03 2.90
5063 6589 1.004560 CATGCACTCGTCCAGGTGT 60.005 57.895 0.00 0.00 36.03 4.16
5067 6620 2.819422 CAAATCATGCACTCGTCCAG 57.181 50.000 0.00 0.00 0.00 3.86
5081 6634 1.006805 CGCGAATGTGCAATGCAAATC 60.007 47.619 11.79 8.52 41.47 2.17
5118 6671 3.293337 ACAACTCCCGGTAAAGCTTTTT 58.707 40.909 18.47 0.00 0.00 1.94
5119 6672 2.940158 ACAACTCCCGGTAAAGCTTTT 58.060 42.857 18.47 1.58 0.00 2.27
5120 6673 2.621526 CAACAACTCCCGGTAAAGCTTT 59.378 45.455 17.30 17.30 0.00 3.51
5121 6674 2.227194 CAACAACTCCCGGTAAAGCTT 58.773 47.619 0.00 0.00 0.00 3.74
5122 6675 1.892209 CAACAACTCCCGGTAAAGCT 58.108 50.000 0.00 0.00 0.00 3.74
5123 6676 0.240145 GCAACAACTCCCGGTAAAGC 59.760 55.000 0.00 0.00 0.00 3.51
5124 6677 0.515564 CGCAACAACTCCCGGTAAAG 59.484 55.000 0.00 0.00 0.00 1.85
5125 6678 0.106335 TCGCAACAACTCCCGGTAAA 59.894 50.000 0.00 0.00 0.00 2.01
5126 6679 0.322322 ATCGCAACAACTCCCGGTAA 59.678 50.000 0.00 0.00 0.00 2.85
5127 6680 0.390603 CATCGCAACAACTCCCGGTA 60.391 55.000 0.00 0.00 0.00 4.02
5128 6681 1.671054 CATCGCAACAACTCCCGGT 60.671 57.895 0.00 0.00 0.00 5.28
5129 6682 2.398554 CCATCGCAACAACTCCCGG 61.399 63.158 0.00 0.00 0.00 5.73
5130 6683 1.234615 AACCATCGCAACAACTCCCG 61.235 55.000 0.00 0.00 0.00 5.14
5131 6684 0.240945 CAACCATCGCAACAACTCCC 59.759 55.000 0.00 0.00 0.00 4.30
5132 6685 1.234821 TCAACCATCGCAACAACTCC 58.765 50.000 0.00 0.00 0.00 3.85
5133 6686 2.855180 CATCAACCATCGCAACAACTC 58.145 47.619 0.00 0.00 0.00 3.01
5134 6687 1.068333 GCATCAACCATCGCAACAACT 60.068 47.619 0.00 0.00 0.00 3.16
5135 6688 1.335780 TGCATCAACCATCGCAACAAC 60.336 47.619 0.00 0.00 0.00 3.32
5166 6720 2.363276 ACCATCCGCCGGTAGTCA 60.363 61.111 1.63 0.00 34.02 3.41
5167 6721 1.745320 ATCACCATCCGCCGGTAGTC 61.745 60.000 1.63 0.00 34.02 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.