AutoCloner

Multiple sequence alignment - TraesCS3B01G271000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G271000	chr3B	100.000	3215	0	0	1	3215	436573547	436576761	0.000000e+00	5938.0
1	TraesCS3B01G271000	chr3B	89.951	1025	96	6	1195	2217	436728045	436727026	0.000000e+00	1315.0
2	TraesCS3B01G271000	chr3D	94.537	1922	79	15	783	2683	338320748	338322664	0.000000e+00	2944.0
3	TraesCS3B01G271000	chr3D	89.602	1029	100	5	1191	2217	338349825	338348802	0.000000e+00	1301.0
4	TraesCS3B01G271000	chr3A	96.005	1502	46	8	783	2273	456451780	456453278	0.000000e+00	2429.0
5	TraesCS3B01G271000	chr3A	89.932	1033	91	10	1189	2217	456700649	456699626	0.000000e+00	1319.0
6	TraesCS3B01G271000	chr3A	81.864	794	114	15	1	785	127842121	127841349	2.700000e-180	641.0
7	TraesCS3B01G271000	chr3A	90.909	418	27	4	2268	2683	456460686	456461094	4.690000e-153	551.0
8	TraesCS3B01G271000	chr3A	88.550	131	10	3	659	786	550651931	550652059	1.540000e-33	154.0
9	TraesCS3B01G271000	chr7D	92.484	785	33	4	1	785	631023132	631022374	0.000000e+00	1099.0
10	TraesCS3B01G271000	chr7D	86.643	554	62	11	2672	3215	568652058	568652609	1.280000e-168	603.0
11	TraesCS3B01G271000	chr2B	91.837	784	44	5	1	784	734840196	734839433	0.000000e+00	1075.0
12	TraesCS3B01G271000	chr7B	91.699	783	41	5	2	784	34232641	34233399	0.000000e+00	1064.0
13	TraesCS3B01G271000	chr7B	83.504	782	98	19	11	786	610636535	610637291	0.000000e+00	701.0
14	TraesCS3B01G271000	chr7B	87.013	539	58	10	2685	3215	76915192	76914658	5.940000e-167	597.0
15	TraesCS3B01G271000	chr2D	91.497	788	46	5	1	786	644242678	644243446	0.000000e+00	1064.0
16	TraesCS3B01G271000	chr2D	87.890	545	55	10	2680	3215	590329765	590329223	5.850000e-177	630.0
17	TraesCS3B01G271000	chr2D	87.636	550	53	12	2679	3215	194196022	194195475	2.720000e-175	625.0
18	TraesCS3B01G271000	chr2D	88.550	131	14	1	1311	1440	536380670	536380800	1.190000e-34	158.0
19	TraesCS3B01G271000	chr6D	91.731	774	42	5	14	787	101207337	101208088	0.000000e+00	1055.0
20	TraesCS3B01G271000	chr6D	87.477	551	53	13	2680	3215	306353794	306353245	3.520000e-174	621.0
21	TraesCS3B01G271000	chr6D	87.850	535	54	11	2688	3215	411996669	411996139	4.560000e-173	617.0
22	TraesCS3B01G271000	chr4B	91.360	787	42	8	1	786	81986338	81985577	0.000000e+00	1053.0
23	TraesCS3B01G271000	chr5B	90.978	787	49	6	1	786	375801118	375801883	0.000000e+00	1040.0
24	TraesCS3B01G271000	chr5B	87.684	544	47	13	2682	3215	532355068	532355601	1.640000e-172	616.0
25	TraesCS3B01G271000	chr5B	86.740	543	63	9	2680	3215	497201767	497202307	2.140000e-166	595.0
26	TraesCS3B01G271000	chr7A	90.736	788	53	6	1	787	287486705	287485937	0.000000e+00	1033.0
27	TraesCS3B01G271000	chr1A	89.427	785	64	5	1	785	579800596	579799831	0.000000e+00	972.0
28	TraesCS3B01G271000	chr1B	89.983	579	36	6	211	786	464140373	464139814	0.000000e+00	728.0
29	TraesCS3B01G271000	chr1B	82.964	722	92	19	70	785	356875778	356875082	9.790000e-175	623.0
30	TraesCS3B01G271000	chr6B	90.563	551	31	10	237	786	27846584	27847114	0.000000e+00	710.0
31	TraesCS3B01G271000	chr6B	89.552	67	7	0	1632	1698	347591969	347591903	5.710000e-13	86.1
32	TraesCS3B01G271000	chr2A	81.932	797	109	17	1	786	20473021	20472249	2.700000e-180	641.0
33	TraesCS3B01G271000	chr2A	87.477	543	59	8	2681	3215	624948239	624948780	4.560000e-173	617.0
34	TraesCS3B01G271000	chr6A	80.447	358	46	13	432	785	17028722	17028385	5.320000e-63	252.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G271000	chr3B	436573547	436576761	3214	False	5938	5938	100.000	1	3215	1	chr3B.!!$F1	3214
1	TraesCS3B01G271000	chr3B	436727026	436728045	1019	True	1315	1315	89.951	1195	2217	1	chr3B.!!$R1	1022
2	TraesCS3B01G271000	chr3D	338320748	338322664	1916	False	2944	2944	94.537	783	2683	1	chr3D.!!$F1	1900
3	TraesCS3B01G271000	chr3D	338348802	338349825	1023	True	1301	1301	89.602	1191	2217	1	chr3D.!!$R1	1026
4	TraesCS3B01G271000	chr3A	456451780	456453278	1498	False	2429	2429	96.005	783	2273	1	chr3A.!!$F1	1490
5	TraesCS3B01G271000	chr3A	456699626	456700649	1023	True	1319	1319	89.932	1189	2217	1	chr3A.!!$R2	1028
6	TraesCS3B01G271000	chr3A	127841349	127842121	772	True	641	641	81.864	1	785	1	chr3A.!!$R1	784
7	TraesCS3B01G271000	chr7D	631022374	631023132	758	True	1099	1099	92.484	1	785	1	chr7D.!!$R1	784
8	TraesCS3B01G271000	chr7D	568652058	568652609	551	False	603	603	86.643	2672	3215	1	chr7D.!!$F1	543
9	TraesCS3B01G271000	chr2B	734839433	734840196	763	True	1075	1075	91.837	1	784	1	chr2B.!!$R1	783
10	TraesCS3B01G271000	chr7B	34232641	34233399	758	False	1064	1064	91.699	2	784	1	chr7B.!!$F1	782
11	TraesCS3B01G271000	chr7B	610636535	610637291	756	False	701	701	83.504	11	786	1	chr7B.!!$F2	775
12	TraesCS3B01G271000	chr7B	76914658	76915192	534	True	597	597	87.013	2685	3215	1	chr7B.!!$R1	530
13	TraesCS3B01G271000	chr2D	644242678	644243446	768	False	1064	1064	91.497	1	786	1	chr2D.!!$F2	785
14	TraesCS3B01G271000	chr2D	590329223	590329765	542	True	630	630	87.890	2680	3215	1	chr2D.!!$R2	535
15	TraesCS3B01G271000	chr2D	194195475	194196022	547	True	625	625	87.636	2679	3215	1	chr2D.!!$R1	536
16	TraesCS3B01G271000	chr6D	101207337	101208088	751	False	1055	1055	91.731	14	787	1	chr6D.!!$F1	773
17	TraesCS3B01G271000	chr6D	306353245	306353794	549	True	621	621	87.477	2680	3215	1	chr6D.!!$R1	535
18	TraesCS3B01G271000	chr6D	411996139	411996669	530	True	617	617	87.850	2688	3215	1	chr6D.!!$R2	527
19	TraesCS3B01G271000	chr4B	81985577	81986338	761	True	1053	1053	91.360	1	786	1	chr4B.!!$R1	785
20	TraesCS3B01G271000	chr5B	375801118	375801883	765	False	1040	1040	90.978	1	786	1	chr5B.!!$F1	785
21	TraesCS3B01G271000	chr5B	532355068	532355601	533	False	616	616	87.684	2682	3215	1	chr5B.!!$F3	533
22	TraesCS3B01G271000	chr5B	497201767	497202307	540	False	595	595	86.740	2680	3215	1	chr5B.!!$F2	535
23	TraesCS3B01G271000	chr7A	287485937	287486705	768	True	1033	1033	90.736	1	787	1	chr7A.!!$R1	786
24	TraesCS3B01G271000	chr1A	579799831	579800596	765	True	972	972	89.427	1	785	1	chr1A.!!$R1	784
25	TraesCS3B01G271000	chr1B	464139814	464140373	559	True	728	728	89.983	211	786	1	chr1B.!!$R2	575
26	TraesCS3B01G271000	chr1B	356875082	356875778	696	True	623	623	82.964	70	785	1	chr1B.!!$R1	715
27	TraesCS3B01G271000	chr6B	27846584	27847114	530	False	710	710	90.563	237	786	1	chr6B.!!$F1	549
28	TraesCS3B01G271000	chr2A	20472249	20473021	772	True	641	641	81.932	1	786	1	chr2A.!!$R1	785
29	TraesCS3B01G271000	chr2A	624948239	624948780	541	False	617	617	87.477	2681	3215	1	chr2A.!!$F1	534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
973	1003	0.108585	AAGTCCGAGCCATTGTGTGT	59.891	50.000	0.00	0.0	0.00	3.72	F
1186	1225	1.398390	CCAGTTCGCCTGAATTACTGC	59.602	52.381	3.77	0.0	44.49	4.40	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1855	1895	0.531974	TCACTTTCACTGTGGCCGTC	60.532	55.0	8.11	0.0	36.21	4.79	R
2617	2662	0.669625	AAACCACGGCGTCTCTAAGC	60.670	55.0	10.85	0.0	0.00	3.09	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
209	210	3.319198	GTGGTTCCCTCCCGCTCA	61.319	66.667	0.00	0.00	0.00	4.26
241	242	1.227380	CGCTCCTATCGCTTGGCTT	60.227	57.895	0.00	0.00	0.00	4.35
253	254	1.897560	CTTGGCTTTTCTCTCCGGTT	58.102	50.000	0.00	0.00	0.00	4.44
552	562	2.154462	CGCATTCCTTCTTGAAGGTGT	58.846	47.619	23.78	13.74	40.81	4.16
574	584	0.172578	CTTGGTACACGGCAGATCGA	59.827	55.000	0.00	0.00	39.29	3.59
644	656	1.329906	CATCCATGCTTTGTCGAGCTC	59.670	52.381	2.73	2.73	43.11	4.09
645	657	0.391661	TCCATGCTTTGTCGAGCTCC	60.392	55.000	8.47	0.00	43.11	4.70
646	658	0.674581	CCATGCTTTGTCGAGCTCCA	60.675	55.000	8.47	0.00	43.11	3.86
647	659	1.376543	CATGCTTTGTCGAGCTCCAT	58.623	50.000	8.47	0.58	43.11	3.41
684	696	5.606505	ACCGTTGTTGGCATTTATTTCTTT	58.393	33.333	0.00	0.00	0.00	2.52
732	756	3.199071	TCTCGCCCCAACAATACTATGTT	59.801	43.478	0.00	0.00	44.08	2.71
886	915	7.993183	TGGAATAGAGACCATGGATAAAAAGTC	59.007	37.037	21.47	2.22	0.00	3.01
892	921	3.524380	ACCATGGATAAAAAGTCCCCGTA	59.476	43.478	21.47	0.00	34.76	4.02
913	942	6.020678	CCGTAGCACTTTTCTTTTTCAACTTG	60.021	38.462	0.00	0.00	0.00	3.16
919	948	7.571059	GCACTTTTCTTTTTCAACTTGAAGCAA	60.571	33.333	4.43	2.23	37.70	3.91
937	966	2.488153	GCAAAACTATTCTTGCGGACCT	59.512	45.455	0.00	0.00	38.66	3.85
953	982	5.116882	GCGGACCTTTACATATATCATCCC	58.883	45.833	0.00	0.00	0.00	3.85
973	1003	0.108585	AAGTCCGAGCCATTGTGTGT	59.891	50.000	0.00	0.00	0.00	3.72
1041	1072	2.438254	AAATCCGGCGATGCAGCA	60.438	55.556	9.30	0.00	39.27	4.41
1077	1108	1.654105	CCGCTCGAGTTTCATGTGTAC	59.346	52.381	15.13	0.00	0.00	2.90
1153	1184	5.069914	TGGTCAGTATACTCGGCACATTTAT	59.930	40.000	1.26	0.00	0.00	1.40
1186	1225	1.398390	CCAGTTCGCCTGAATTACTGC	59.602	52.381	3.77	0.00	44.49	4.40
1219	1259	2.957402	TGGTTGATGCAGGAAGAACT	57.043	45.000	0.00	0.00	0.00	3.01
2255	2298	2.817258	CCGGGAGCAACAAAATACTTCA	59.183	45.455	0.00	0.00	0.00	3.02
2287	2330	4.817318	AAAAATGCAAATGTCCGGGTAT	57.183	36.364	0.00	0.00	0.00	2.73
2291	2334	2.796557	TGCAAATGTCCGGGTATTTGA	58.203	42.857	31.07	20.15	43.51	2.69
2351	2394	8.894409	TTGTGATAGAACGAATGCAAAATTAG	57.106	30.769	0.00	0.00	0.00	1.73
2368	2411	3.907894	TTAGTCCCATGTCAAAAACGC	57.092	42.857	0.00	0.00	0.00	4.84
2389	2434	9.906660	AAACGCTCTTATCTCTTATTATGAGAG	57.093	33.333	7.58	7.58	42.85	3.20
2390	2435	8.050778	ACGCTCTTATCTCTTATTATGAGAGG	57.949	38.462	12.99	0.00	42.85	3.69
2399	2444	6.775142	TCTCTTATTATGAGAGGGTGAGAGTG	59.225	42.308	12.99	0.00	40.78	3.51
2474	2519	7.010367	TCGCAAAGAAAAACTAAGTTTCTACGA	59.990	33.333	11.96	11.96	43.00	3.43
2493	2538	3.000727	CGATACACCCTTTGAGGTCAAC	58.999	50.000	0.00	0.00	38.39	3.18
2504	2549	2.124695	GGTCAACCTGGGATCGGC	60.125	66.667	0.00	0.00	0.00	5.54
2508	2553	3.000819	AACCTGGGATCGGCGTGA	61.001	61.111	6.85	0.00	0.00	4.35
2528	2573	3.579586	TGAGTTGATACGGGTTTAGTGGT	59.420	43.478	0.00	0.00	0.00	4.16
2543	2588	7.934665	GGGTTTAGTGGTGTGGATTTTATTTTT	59.065	33.333	0.00	0.00	0.00	1.94
2579	2624	7.148239	GGATAGGCTTAATCGGTTTAATGATGG	60.148	40.741	0.00	0.00	0.00	3.51
2580	2625	5.690865	AGGCTTAATCGGTTTAATGATGGA	58.309	37.500	0.00	0.00	0.00	3.41
2617	2662	0.388006	GCGGGTTGACCAATTTTCGG	60.388	55.000	2.12	0.00	40.22	4.30
2618	2663	0.388006	CGGGTTGACCAATTTTCGGC	60.388	55.000	2.12	0.00	40.22	5.54
2619	2664	0.966179	GGGTTGACCAATTTTCGGCT	59.034	50.000	2.12	0.00	39.85	5.52
2620	2665	1.343142	GGGTTGACCAATTTTCGGCTT	59.657	47.619	2.12	0.00	39.85	4.35
2621	2666	2.559231	GGGTTGACCAATTTTCGGCTTA	59.441	45.455	2.12	0.00	39.85	3.09
2659	2707	5.916318	TCAACCTGCAAAATTGAAATGACT	58.084	33.333	4.84	0.00	29.56	3.41
2660	2708	5.984926	TCAACCTGCAAAATTGAAATGACTC	59.015	36.000	4.84	0.00	29.56	3.36
2665	2713	6.365247	CCTGCAAAATTGAAATGACTCAAGAG	59.635	38.462	0.00	0.00	38.66	2.85
2869	2924	3.367743	CCCGCATGCTGCACACTT	61.368	61.111	17.13	0.00	45.36	3.16
2873	2928	1.848932	CGCATGCTGCACACTTGAGT	61.849	55.000	17.13	0.00	45.36	3.41
2891	2948	4.379243	CCCGCTCGCAACTCCACT	62.379	66.667	0.00	0.00	0.00	4.00
2909	2969	1.120530	CTTACCCATCTAGCCGTGGT	58.879	55.000	7.55	0.00	33.55	4.16
3128	3198	6.476378	AGGTATGTATTGCTTCAACTTCACT	58.524	36.000	0.00	0.00	0.00	3.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
176	177	4.415150	ACCTCCTCCGCCGTCGTA	62.415	66.667	0.00	0.00	0.00	3.43
209	210	4.586235	AGCGGCAACACCAAGGCT	62.586	61.111	1.45	0.00	39.03	4.58
241	242	1.002087	GCCAAGAGAACCGGAGAGAAA	59.998	52.381	9.46	0.00	0.00	2.52
253	254	1.371183	CCAACACGAGGCCAAGAGA	59.629	57.895	5.01	0.00	0.00	3.10
448	456	1.614241	GGATGGCTACCACCGACACT	61.614	60.000	0.00	0.00	35.80	3.55
552	562	1.884075	ATCTGCCGTGTACCAAGCGA	61.884	55.000	0.00	0.00	0.00	4.93
644	656	1.009829	GGTAGCTCGACAAAGCATGG	58.990	55.000	0.00	0.00	45.00	3.66
645	657	0.647410	CGGTAGCTCGACAAAGCATG	59.353	55.000	0.00	0.00	45.00	4.06
646	658	0.246635	ACGGTAGCTCGACAAAGCAT	59.753	50.000	1.33	0.00	45.00	3.79
647	659	0.032952	AACGGTAGCTCGACAAAGCA	59.967	50.000	1.33	0.00	45.00	3.91
710	733	2.769663	ACATAGTATTGTTGGGGCGAGA	59.230	45.455	0.00	0.00	0.00	4.04
732	756	4.902443	TTCAAAGCAACGAACACCATAA	57.098	36.364	0.00	0.00	0.00	1.90
812	839	4.332268	GCACCTGATTCTTTCTCATCTCAC	59.668	45.833	0.00	0.00	0.00	3.51
886	915	3.316868	TGAAAAAGAAAAGTGCTACGGGG	59.683	43.478	0.00	0.00	0.00	5.73
892	921	6.091305	GCTTCAAGTTGAAAAAGAAAAGTGCT	59.909	34.615	18.55	0.00	35.73	4.40
913	942	4.159120	GTCCGCAAGAATAGTTTTGCTTC	58.841	43.478	15.22	3.57	45.64	3.86
919	948	5.310451	TGTAAAGGTCCGCAAGAATAGTTT	58.690	37.500	0.00	0.00	43.02	2.66
932	961	7.690256	ACTTGGGATGATATATGTAAAGGTCC	58.310	38.462	0.00	0.00	0.00	4.46
937	966	7.547697	TCGGACTTGGGATGATATATGTAAA	57.452	36.000	0.00	0.00	0.00	2.01
953	982	0.518636	CACACAATGGCTCGGACTTG	59.481	55.000	0.00	0.00	0.00	3.16
973	1003	2.153039	CGTGAATCAAGAGCACGCA	58.847	52.632	12.88	0.00	46.86	5.24
1153	1184	1.270094	CGAACTGGGCAAGTGTGAGTA	60.270	52.381	0.00	0.00	39.81	2.59
1186	1225	4.266029	GCATCAACCATCGCAATAAACTTG	59.734	41.667	0.00	0.00	0.00	3.16
1219	1259	2.727392	CCATCCGCCGGTAGTTGGA	61.727	63.158	14.48	9.70	34.45	3.53
1536	1576	2.352805	CTGTCCCAGGCCAGGAAC	59.647	66.667	17.38	6.06	34.43	3.62
1725	1765	4.054825	GACACGGACGGCGGGTTA	62.055	66.667	13.24	0.00	0.00	2.85
1855	1895	0.531974	TCACTTTCACTGTGGCCGTC	60.532	55.000	8.11	0.00	36.21	4.79
2287	2330	6.976088	TCATTAAAAATTCTCCACGCTCAAA	58.024	32.000	0.00	0.00	0.00	2.69
2291	2334	7.657336	TCTTTTCATTAAAAATTCTCCACGCT	58.343	30.769	0.00	0.00	36.30	5.07
2321	2364	5.688823	TGCATTCGTTCTATCACAAAACTG	58.311	37.500	0.00	0.00	0.00	3.16
2351	2394	1.880027	AGAGCGTTTTTGACATGGGAC	59.120	47.619	0.00	0.00	0.00	4.46
2368	2411	9.527157	TCACCCTCTCATAATAAGAGATAAGAG	57.473	37.037	1.78	0.00	42.39	2.85
2418	2463	0.760945	CCTACTCCCTCCGCTCCATT	60.761	60.000	0.00	0.00	0.00	3.16
2422	2467	1.074244	AGATACCTACTCCCTCCGCTC	59.926	57.143	0.00	0.00	0.00	5.03
2424	2469	2.435422	GTAGATACCTACTCCCTCCGC	58.565	57.143	0.00	0.00	41.52	5.54
2474	2519	2.986728	AGGTTGACCTCAAAGGGTGTAT	59.013	45.455	0.00	0.00	44.77	2.29
2493	2538	3.019003	AACTCACGCCGATCCCAGG	62.019	63.158	0.00	0.00	0.00	4.45
2504	2549	3.611113	CACTAAACCCGTATCAACTCACG	59.389	47.826	0.00	0.00	37.89	4.35
2508	2553	3.325716	ACACCACTAAACCCGTATCAACT	59.674	43.478	0.00	0.00	0.00	3.16
2528	2573	7.871973	CCACTGACATCAAAAATAAAATCCACA	59.128	33.333	0.00	0.00	0.00	4.17
2543	2588	5.509670	CGATTAAGCCTATCCACTGACATCA	60.510	44.000	0.00	0.00	0.00	3.07
2579	2624	1.170290	CCCCAGACCACACCGTTTTC	61.170	60.000	0.00	0.00	0.00	2.29
2580	2625	1.152839	CCCCAGACCACACCGTTTT	60.153	57.895	0.00	0.00	0.00	2.43
2610	2655	1.653151	GGCGTCTCTAAGCCGAAAAT	58.347	50.000	0.00	0.00	44.22	1.82
2617	2662	0.669625	AAACCACGGCGTCTCTAAGC	60.670	55.000	10.85	0.00	0.00	3.09
2618	2663	1.336517	TGAAACCACGGCGTCTCTAAG	60.337	52.381	10.85	0.00	0.00	2.18
2619	2664	0.675083	TGAAACCACGGCGTCTCTAA	59.325	50.000	10.85	0.00	0.00	2.10
2620	2665	0.675083	TTGAAACCACGGCGTCTCTA	59.325	50.000	10.85	0.00	0.00	2.43
2621	2666	0.878961	GTTGAAACCACGGCGTCTCT	60.879	55.000	10.85	0.00	0.00	3.10
2691	2739	2.347452	GCTTATTTAGCGCGTCTGTTGA	59.653	45.455	8.43	0.00	40.71	3.18
2761	2814	2.199652	TTTTTGTGCCTCCGCTGGG	61.200	57.895	0.00	0.00	35.36	4.45
2858	2913	1.227943	GGGACTCAAGTGTGCAGCA	60.228	57.895	0.00	0.00	0.00	4.41
2869	2924	3.282745	GAGTTGCGAGCGGGACTCA	62.283	63.158	15.93	0.00	46.63	3.41
2873	2928	4.373116	GTGGAGTTGCGAGCGGGA	62.373	66.667	0.00	0.00	0.00	5.14
2891	2948	0.828022	CACCACGGCTAGATGGGTAA	59.172	55.000	11.53	0.00	40.59	2.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.