Multiple sequence alignment - TraesCS3B01G270700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G270700 chr3B 100.000 2477 0 0 1 2477 436525323 436527799 0.000000e+00 4575.0
1 TraesCS3B01G270700 chr3D 91.149 1593 70 26 178 1720 338298201 338299772 0.000000e+00 2095.0
2 TraesCS3B01G270700 chr3D 96.053 152 6 0 1 152 508062631 508062480 5.290000e-62 248.0
3 TraesCS3B01G270700 chr3D 96.644 149 5 0 1 149 586181925 586182073 5.290000e-62 248.0
4 TraesCS3B01G270700 chr3D 91.057 123 11 0 1725 1847 338299857 338299979 1.520000e-37 167.0
5 TraesCS3B01G270700 chr3A 86.284 1655 97 47 178 1733 456408705 456410328 0.000000e+00 1679.0
6 TraesCS3B01G270700 chr7D 89.223 631 51 6 1848 2475 576645031 576644415 0.000000e+00 773.0
7 TraesCS3B01G270700 chr7D 88.626 633 57 4 1845 2475 145920051 145919432 0.000000e+00 756.0
8 TraesCS3B01G270700 chr7D 96.644 149 5 0 1 149 2216591 2216739 5.290000e-62 248.0
9 TraesCS3B01G270700 chr7D 96.644 149 5 0 1 149 98404233 98404381 5.290000e-62 248.0
10 TraesCS3B01G270700 chr7D 96.053 152 6 0 1 152 565189126 565188975 5.290000e-62 248.0
11 TraesCS3B01G270700 chr5D 88.906 640 53 12 1841 2477 324410476 324409852 0.000000e+00 773.0
12 TraesCS3B01G270700 chr2D 89.065 631 53 5 1848 2475 276936748 276936131 0.000000e+00 769.0
13 TraesCS3B01G270700 chr2D 91.773 547 41 4 1934 2477 194748195 194748740 0.000000e+00 758.0
14 TraesCS3B01G270700 chr2D 88.328 634 58 10 1844 2475 285349010 285349629 0.000000e+00 747.0
15 TraesCS3B01G270700 chr2D 94.083 169 8 2 1 168 571547643 571547810 3.160000e-64 255.0
16 TraesCS3B01G270700 chr2D 97.315 149 4 0 1 149 315111472 315111620 1.140000e-63 254.0
17 TraesCS3B01G270700 chr4D 91.956 547 40 4 1934 2477 77231491 77232036 0.000000e+00 763.0
18 TraesCS3B01G270700 chr1A 91.713 543 43 2 1934 2475 508052883 508052342 0.000000e+00 752.0
19 TraesCS3B01G270700 chr5A 88.431 631 57 5 1847 2475 598827521 598826905 0.000000e+00 747.0
20 TraesCS3B01G270700 chr6A 85.489 634 72 10 1848 2477 213868329 213867712 0.000000e+00 643.0
21 TraesCS3B01G270700 chrUn 97.315 149 4 0 1 149 29972548 29972696 1.140000e-63 254.0
22 TraesCS3B01G270700 chr5B 96.078 153 6 0 1 153 222726003 222726155 1.470000e-62 250.0
23 TraesCS3B01G270700 chr6D 90.385 52 5 0 1823 1874 104968006 104967955 4.420000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G270700 chr3B 436525323 436527799 2476 False 4575 4575 100.000 1 2477 1 chr3B.!!$F1 2476
1 TraesCS3B01G270700 chr3D 338298201 338299979 1778 False 1131 2095 91.103 178 1847 2 chr3D.!!$F2 1669
2 TraesCS3B01G270700 chr3A 456408705 456410328 1623 False 1679 1679 86.284 178 1733 1 chr3A.!!$F1 1555
3 TraesCS3B01G270700 chr7D 576644415 576645031 616 True 773 773 89.223 1848 2475 1 chr7D.!!$R3 627
4 TraesCS3B01G270700 chr7D 145919432 145920051 619 True 756 756 88.626 1845 2475 1 chr7D.!!$R1 630
5 TraesCS3B01G270700 chr5D 324409852 324410476 624 True 773 773 88.906 1841 2477 1 chr5D.!!$R1 636
6 TraesCS3B01G270700 chr2D 276936131 276936748 617 True 769 769 89.065 1848 2475 1 chr2D.!!$R1 627
7 TraesCS3B01G270700 chr2D 194748195 194748740 545 False 758 758 91.773 1934 2477 1 chr2D.!!$F1 543
8 TraesCS3B01G270700 chr2D 285349010 285349629 619 False 747 747 88.328 1844 2475 1 chr2D.!!$F2 631
9 TraesCS3B01G270700 chr4D 77231491 77232036 545 False 763 763 91.956 1934 2477 1 chr4D.!!$F1 543
10 TraesCS3B01G270700 chr1A 508052342 508052883 541 True 752 752 91.713 1934 2475 1 chr1A.!!$R1 541
11 TraesCS3B01G270700 chr5A 598826905 598827521 616 True 747 747 88.431 1847 2475 1 chr5A.!!$R1 628
12 TraesCS3B01G270700 chr6A 213867712 213868329 617 True 643 643 85.489 1848 2477 1 chr6A.!!$R1 629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.037139 TTGCTTAGACGGCGGCTTTA 60.037 50.0 25.39 9.12 0.0 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1928 2139 0.098376 GTAGACGTGTGGGCTCTACG 59.902 60.0 11.53 11.53 42.98 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.654863 CTGTTTGGTATTAGGCCCAGG 58.345 52.381 0.00 0.00 31.04 4.45
21 22 1.341581 TGTTTGGTATTAGGCCCAGGC 60.342 52.381 0.00 0.00 41.06 4.85
22 23 1.063942 GTTTGGTATTAGGCCCAGGCT 60.064 52.381 8.89 0.35 42.39 4.58
23 24 2.173996 GTTTGGTATTAGGCCCAGGCTA 59.826 50.000 8.89 0.00 39.70 3.93
24 25 2.433444 TGGTATTAGGCCCAGGCTAT 57.567 50.000 8.89 0.32 40.30 2.97
25 26 2.266279 TGGTATTAGGCCCAGGCTATC 58.734 52.381 8.89 0.00 40.30 2.08
26 27 2.158004 TGGTATTAGGCCCAGGCTATCT 60.158 50.000 8.89 0.00 40.30 1.98
27 28 2.237392 GGTATTAGGCCCAGGCTATCTG 59.763 54.545 8.89 0.00 40.30 2.90
28 29 0.695347 ATTAGGCCCAGGCTATCTGC 59.305 55.000 8.89 0.00 40.30 4.26
29 30 1.758440 TTAGGCCCAGGCTATCTGCG 61.758 60.000 8.89 0.00 40.30 5.18
36 37 2.281139 GGCTATCTGCGCCCCTTC 60.281 66.667 4.18 0.00 44.05 3.46
37 38 2.505982 GCTATCTGCGCCCCTTCA 59.494 61.111 4.18 0.00 0.00 3.02
38 39 1.072159 GCTATCTGCGCCCCTTCAT 59.928 57.895 4.18 0.00 0.00 2.57
39 40 0.952984 GCTATCTGCGCCCCTTCATC 60.953 60.000 4.18 0.00 0.00 2.92
40 41 0.394192 CTATCTGCGCCCCTTCATCA 59.606 55.000 4.18 0.00 0.00 3.07
41 42 0.836606 TATCTGCGCCCCTTCATCAA 59.163 50.000 4.18 0.00 0.00 2.57
42 43 0.749454 ATCTGCGCCCCTTCATCAAC 60.749 55.000 4.18 0.00 0.00 3.18
43 44 1.377725 CTGCGCCCCTTCATCAACT 60.378 57.895 4.18 0.00 0.00 3.16
44 45 1.651240 CTGCGCCCCTTCATCAACTG 61.651 60.000 4.18 0.00 0.00 3.16
45 46 1.377202 GCGCCCCTTCATCAACTGA 60.377 57.895 0.00 0.00 0.00 3.41
46 47 0.960364 GCGCCCCTTCATCAACTGAA 60.960 55.000 0.00 0.00 41.61 3.02
47 48 1.755179 CGCCCCTTCATCAACTGAAT 58.245 50.000 0.00 0.00 42.87 2.57
48 49 2.917933 CGCCCCTTCATCAACTGAATA 58.082 47.619 0.00 0.00 42.87 1.75
49 50 2.874701 CGCCCCTTCATCAACTGAATAG 59.125 50.000 0.00 0.00 42.87 1.73
50 51 3.217626 GCCCCTTCATCAACTGAATAGG 58.782 50.000 0.00 0.00 42.87 2.57
51 52 3.372025 GCCCCTTCATCAACTGAATAGGT 60.372 47.826 0.00 0.00 42.87 3.08
52 53 4.202441 CCCCTTCATCAACTGAATAGGTG 58.798 47.826 0.00 0.00 42.87 4.00
53 54 4.324563 CCCCTTCATCAACTGAATAGGTGT 60.325 45.833 0.00 0.00 42.87 4.16
54 55 5.104527 CCCCTTCATCAACTGAATAGGTGTA 60.105 44.000 0.00 0.00 42.87 2.90
55 56 6.051717 CCCTTCATCAACTGAATAGGTGTAG 58.948 44.000 0.00 0.00 42.87 2.74
56 57 5.525378 CCTTCATCAACTGAATAGGTGTAGC 59.475 44.000 0.00 0.00 42.87 3.58
57 58 4.682787 TCATCAACTGAATAGGTGTAGCG 58.317 43.478 0.00 0.00 42.42 4.26
58 59 4.401202 TCATCAACTGAATAGGTGTAGCGA 59.599 41.667 0.00 0.00 42.42 4.93
59 60 4.106029 TCAACTGAATAGGTGTAGCGAC 57.894 45.455 0.00 0.00 42.42 5.19
60 61 2.846039 ACTGAATAGGTGTAGCGACG 57.154 50.000 0.00 0.00 0.00 5.12
61 62 1.404391 ACTGAATAGGTGTAGCGACGG 59.596 52.381 0.00 0.00 0.00 4.79
62 63 1.404391 CTGAATAGGTGTAGCGACGGT 59.596 52.381 4.41 4.41 0.00 4.83
63 64 1.820519 TGAATAGGTGTAGCGACGGTT 59.179 47.619 4.26 0.00 0.00 4.44
64 65 2.231964 TGAATAGGTGTAGCGACGGTTT 59.768 45.455 4.26 0.00 0.00 3.27
65 66 2.288961 ATAGGTGTAGCGACGGTTTG 57.711 50.000 4.26 0.00 0.00 2.93
66 67 0.961019 TAGGTGTAGCGACGGTTTGT 59.039 50.000 4.26 0.00 0.00 2.83
67 68 0.105408 AGGTGTAGCGACGGTTTGTT 59.895 50.000 4.26 0.00 0.00 2.83
68 69 0.233848 GGTGTAGCGACGGTTTGTTG 59.766 55.000 4.26 0.00 34.83 3.33
75 76 2.572173 CGACGGTTTGTTGCTTAGAC 57.428 50.000 0.00 0.00 0.00 2.59
76 77 1.136721 CGACGGTTTGTTGCTTAGACG 60.137 52.381 0.00 0.00 0.00 4.18
77 78 1.193874 GACGGTTTGTTGCTTAGACGG 59.806 52.381 0.00 0.00 0.00 4.79
78 79 0.110373 CGGTTTGTTGCTTAGACGGC 60.110 55.000 0.00 0.00 0.00 5.68
79 80 0.110373 GGTTTGTTGCTTAGACGGCG 60.110 55.000 4.80 4.80 0.00 6.46
80 81 0.110373 GTTTGTTGCTTAGACGGCGG 60.110 55.000 13.24 0.00 0.00 6.13
81 82 1.847890 TTTGTTGCTTAGACGGCGGC 61.848 55.000 13.24 8.92 0.00 6.53
82 83 2.434359 GTTGCTTAGACGGCGGCT 60.434 61.111 23.30 23.30 0.00 5.52
83 84 2.033194 GTTGCTTAGACGGCGGCTT 61.033 57.895 25.39 5.00 0.00 4.35
84 85 1.302192 TTGCTTAGACGGCGGCTTT 60.302 52.632 25.39 0.00 0.00 3.51
85 86 0.037139 TTGCTTAGACGGCGGCTTTA 60.037 50.000 25.39 9.12 0.00 1.85
86 87 0.459585 TGCTTAGACGGCGGCTTTAG 60.460 55.000 25.39 20.26 0.00 1.85
87 88 0.459759 GCTTAGACGGCGGCTTTAGT 60.460 55.000 25.39 0.00 0.00 2.24
88 89 2.005560 GCTTAGACGGCGGCTTTAGTT 61.006 52.381 25.39 0.00 0.00 2.24
89 90 2.344025 CTTAGACGGCGGCTTTAGTTT 58.656 47.619 25.39 0.00 0.00 2.66
90 91 2.460757 TAGACGGCGGCTTTAGTTTT 57.539 45.000 25.39 0.00 0.00 2.43
91 92 2.460757 AGACGGCGGCTTTAGTTTTA 57.539 45.000 10.88 0.00 0.00 1.52
92 93 2.071540 AGACGGCGGCTTTAGTTTTAC 58.928 47.619 10.88 0.00 0.00 2.01
93 94 2.071540 GACGGCGGCTTTAGTTTTACT 58.928 47.619 13.24 0.00 0.00 2.24
94 95 3.056607 AGACGGCGGCTTTAGTTTTACTA 60.057 43.478 10.88 0.00 0.00 1.82
95 96 3.865446 ACGGCGGCTTTAGTTTTACTAT 58.135 40.909 13.24 0.00 29.64 2.12
96 97 4.256110 ACGGCGGCTTTAGTTTTACTATT 58.744 39.130 13.24 0.00 29.64 1.73
97 98 4.093850 ACGGCGGCTTTAGTTTTACTATTG 59.906 41.667 13.24 0.00 29.64 1.90
98 99 4.093850 CGGCGGCTTTAGTTTTACTATTGT 59.906 41.667 7.61 0.00 29.64 2.71
99 100 5.291614 CGGCGGCTTTAGTTTTACTATTGTA 59.708 40.000 7.61 0.00 29.64 2.41
100 101 6.018507 CGGCGGCTTTAGTTTTACTATTGTAT 60.019 38.462 7.61 0.00 29.64 2.29
101 102 7.130269 GGCGGCTTTAGTTTTACTATTGTATG 58.870 38.462 0.00 0.00 29.64 2.39
102 103 7.011669 GGCGGCTTTAGTTTTACTATTGTATGA 59.988 37.037 0.00 0.00 29.64 2.15
103 104 7.849515 GCGGCTTTAGTTTTACTATTGTATGAC 59.150 37.037 0.00 0.00 29.64 3.06
104 105 9.095065 CGGCTTTAGTTTTACTATTGTATGACT 57.905 33.333 7.73 7.73 29.64 3.41
117 118 9.436957 ACTATTGTATGACTTTGTAAGGTCTTG 57.563 33.333 8.11 0.00 34.01 3.02
118 119 9.436957 CTATTGTATGACTTTGTAAGGTCTTGT 57.563 33.333 8.11 0.00 34.01 3.16
119 120 7.490962 TTGTATGACTTTGTAAGGTCTTGTG 57.509 36.000 8.11 0.00 34.01 3.33
120 121 6.822442 TGTATGACTTTGTAAGGTCTTGTGA 58.178 36.000 8.11 0.00 34.01 3.58
121 122 6.929049 TGTATGACTTTGTAAGGTCTTGTGAG 59.071 38.462 8.11 0.00 34.01 3.51
122 123 5.607939 TGACTTTGTAAGGTCTTGTGAGA 57.392 39.130 8.11 0.00 34.01 3.27
123 124 5.984725 TGACTTTGTAAGGTCTTGTGAGAA 58.015 37.500 8.11 0.00 32.66 2.87
124 125 6.591935 TGACTTTGTAAGGTCTTGTGAGAAT 58.408 36.000 8.11 0.00 32.66 2.40
125 126 7.732025 TGACTTTGTAAGGTCTTGTGAGAATA 58.268 34.615 8.11 0.00 32.66 1.75
126 127 8.208224 TGACTTTGTAAGGTCTTGTGAGAATAA 58.792 33.333 8.11 0.00 32.66 1.40
127 128 9.220767 GACTTTGTAAGGTCTTGTGAGAATAAT 57.779 33.333 0.23 0.00 32.66 1.28
128 129 9.574516 ACTTTGTAAGGTCTTGTGAGAATAATT 57.425 29.630 0.00 0.00 32.66 1.40
142 143 9.661563 TGTGAGAATAATTAATAAAGTGACCGT 57.338 29.630 0.00 0.00 0.00 4.83
151 152 2.919666 AAAGTGACCGTATGCATTGC 57.080 45.000 3.54 0.46 0.00 3.56
152 153 0.726827 AAGTGACCGTATGCATTGCG 59.273 50.000 3.54 10.45 0.00 4.85
156 157 3.508474 CCGTATGCATTGCGGGTT 58.492 55.556 25.47 0.00 41.60 4.11
157 158 2.696566 CCGTATGCATTGCGGGTTA 58.303 52.632 25.47 0.00 41.60 2.85
158 159 1.234821 CCGTATGCATTGCGGGTTAT 58.765 50.000 25.47 0.00 41.60 1.89
159 160 1.196808 CCGTATGCATTGCGGGTTATC 59.803 52.381 25.47 0.00 41.60 1.75
160 161 1.196808 CGTATGCATTGCGGGTTATCC 59.803 52.381 3.54 0.00 0.00 2.59
161 162 2.504367 GTATGCATTGCGGGTTATCCT 58.496 47.619 3.54 0.00 0.00 3.24
162 163 1.609208 ATGCATTGCGGGTTATCCTC 58.391 50.000 3.84 0.00 0.00 3.71
163 164 0.465460 TGCATTGCGGGTTATCCTCC 60.465 55.000 3.84 0.00 0.00 4.30
164 165 0.179018 GCATTGCGGGTTATCCTCCT 60.179 55.000 0.00 0.00 0.00 3.69
165 166 1.750682 GCATTGCGGGTTATCCTCCTT 60.751 52.381 0.00 0.00 0.00 3.36
166 167 2.654863 CATTGCGGGTTATCCTCCTTT 58.345 47.619 0.00 0.00 0.00 3.11
167 168 2.891191 TTGCGGGTTATCCTCCTTTT 57.109 45.000 0.00 0.00 0.00 2.27
168 169 2.891191 TGCGGGTTATCCTCCTTTTT 57.109 45.000 0.00 0.00 0.00 1.94
228 231 2.027561 TCAGCCAGCATTAACTAACGGT 60.028 45.455 0.00 0.00 0.00 4.83
332 335 0.586319 TGGCGAGCGAAAGAAAACAG 59.414 50.000 0.00 0.00 0.00 3.16
613 637 9.919416 TGCCCAACATATATTATGCATAATACT 57.081 29.630 31.78 23.81 37.86 2.12
675 724 0.312102 GCAACAACTTCCCAGCTGAC 59.688 55.000 17.39 0.00 0.00 3.51
678 727 0.109342 ACAACTTCCCAGCTGACCTG 59.891 55.000 17.39 5.25 41.41 4.00
679 728 0.397941 CAACTTCCCAGCTGACCTGA 59.602 55.000 17.39 3.07 44.64 3.86
722 772 1.791103 GCAACGGCCTTTACAGCACA 61.791 55.000 0.00 0.00 0.00 4.57
723 773 0.238289 CAACGGCCTTTACAGCACAG 59.762 55.000 0.00 0.00 0.00 3.66
793 850 2.161211 GCAGCTCAAACCACAATCTCTC 59.839 50.000 0.00 0.00 0.00 3.20
798 855 4.320788 GCTCAAACCACAATCTCTCCTTTG 60.321 45.833 0.00 0.00 0.00 2.77
827 894 1.603802 CGAAACGGCGATAGGTAGGTA 59.396 52.381 16.62 0.00 0.00 3.08
828 895 2.033299 CGAAACGGCGATAGGTAGGTAA 59.967 50.000 16.62 0.00 0.00 2.85
829 896 3.636381 GAAACGGCGATAGGTAGGTAAG 58.364 50.000 16.62 0.00 0.00 2.34
830 897 2.355010 ACGGCGATAGGTAGGTAAGT 57.645 50.000 16.62 0.00 0.00 2.24
831 898 2.659428 ACGGCGATAGGTAGGTAAGTT 58.341 47.619 16.62 0.00 0.00 2.66
832 899 3.026694 ACGGCGATAGGTAGGTAAGTTT 58.973 45.455 16.62 0.00 0.00 2.66
833 900 3.067320 ACGGCGATAGGTAGGTAAGTTTC 59.933 47.826 16.62 0.00 0.00 2.78
834 901 3.636381 GGCGATAGGTAGGTAAGTTTCG 58.364 50.000 0.00 0.00 0.00 3.46
835 902 3.067320 GGCGATAGGTAGGTAAGTTTCGT 59.933 47.826 0.00 0.00 0.00 3.85
838 905 4.966366 CGATAGGTAGGTAAGTTTCGTTCG 59.034 45.833 0.00 0.00 0.00 3.95
839 906 3.582714 AGGTAGGTAAGTTTCGTTCGG 57.417 47.619 0.00 0.00 0.00 4.30
840 907 1.995484 GGTAGGTAAGTTTCGTTCGGC 59.005 52.381 0.00 0.00 0.00 5.54
841 908 2.610232 GGTAGGTAAGTTTCGTTCGGCA 60.610 50.000 0.00 0.00 0.00 5.69
842 909 1.505425 AGGTAAGTTTCGTTCGGCAC 58.495 50.000 0.00 0.00 0.00 5.01
960 1032 5.420409 ACGTACCATCTTGAATCTTCTTCC 58.580 41.667 0.00 0.00 0.00 3.46
979 1051 4.810584 TCCCCTAGGCTAGCTATATACC 57.189 50.000 16.26 0.00 0.00 2.73
980 1052 4.390936 TCCCCTAGGCTAGCTATATACCT 58.609 47.826 16.26 3.59 34.42 3.08
982 1054 3.892588 CCCTAGGCTAGCTATATACCTGC 59.107 52.174 16.26 3.35 31.79 4.85
987 1059 6.080969 AGGCTAGCTATATACCTGCTCTTA 57.919 41.667 15.72 0.00 38.15 2.10
1163 1250 2.962569 CGCCGACCAGAAGACAGA 59.037 61.111 0.00 0.00 0.00 3.41
1164 1251 1.444553 CGCCGACCAGAAGACAGAC 60.445 63.158 0.00 0.00 0.00 3.51
1515 1614 1.541379 TGCTGTGATTCATGCAAGCT 58.459 45.000 12.71 0.00 31.25 3.74
1567 1667 2.236893 TGTACCCCCGTCCTTGTTTATC 59.763 50.000 0.00 0.00 0.00 1.75
1579 1699 7.494625 CCGTCCTTGTTTATCTAAGATGCTTAA 59.505 37.037 0.00 0.00 0.00 1.85
1624 1751 1.822581 CTACATCGCGTTGATCGTCA 58.177 50.000 23.12 0.00 42.13 4.35
1679 1807 1.199327 CAGACGTCTAGTTGCGAGGAA 59.801 52.381 19.57 0.00 0.00 3.36
1712 1840 3.181501 GGTATGCTGCTTTGCGTATTTGA 60.182 43.478 0.00 0.00 36.89 2.69
1713 1841 3.574284 ATGCTGCTTTGCGTATTTGAA 57.426 38.095 0.00 0.00 35.36 2.69
1737 1947 3.893326 AAAAAGGGTATGATGCTTGCC 57.107 42.857 0.00 0.00 0.00 4.52
1763 1973 1.130373 CGAGCGTGCATGTTAATGGTT 59.870 47.619 7.93 0.00 34.09 3.67
1770 1980 4.013728 GTGCATGTTAATGGTTACCCTCA 58.986 43.478 0.00 0.00 34.09 3.86
1772 1982 4.263727 TGCATGTTAATGGTTACCCTCACT 60.264 41.667 0.00 0.00 34.09 3.41
1777 1987 0.620556 ATGGTTACCCTCACTGCCTG 59.379 55.000 0.00 0.00 0.00 4.85
1782 1992 4.729918 CCCTCACTGCCTGCCACC 62.730 72.222 0.00 0.00 0.00 4.61
1802 2012 4.139420 CTCGCGCGAAGGCTGTTG 62.139 66.667 33.99 15.54 36.88 3.33
1832 2042 0.321298 ATGACACGTTACACCCTGCC 60.321 55.000 0.00 0.00 0.00 4.85
1860 2070 5.403166 TCAAATTATTAGGACGCCGATAACG 59.597 40.000 0.00 0.00 39.43 3.18
1861 2071 2.336554 TATTAGGACGCCGATAACGC 57.663 50.000 0.00 0.00 38.29 4.84
1868 2078 2.435234 GCCGATAACGCCCACACA 60.435 61.111 0.00 0.00 38.29 3.72
1870 2080 0.531090 GCCGATAACGCCCACACATA 60.531 55.000 0.00 0.00 38.29 2.29
1903 2113 3.395639 GGATCTGGTCACACGTTTTGTA 58.604 45.455 0.00 0.00 35.67 2.41
1920 2131 6.814644 CGTTTTGTATGTGTCTAATAGGACCA 59.185 38.462 0.00 0.00 35.54 4.02
1921 2132 7.010183 CGTTTTGTATGTGTCTAATAGGACCAG 59.990 40.741 0.00 0.00 35.54 4.00
1922 2133 5.531122 TGTATGTGTCTAATAGGACCAGC 57.469 43.478 0.00 0.00 35.54 4.85
1923 2134 4.344102 TGTATGTGTCTAATAGGACCAGCC 59.656 45.833 0.00 0.00 35.54 4.85
1924 2135 2.116238 TGTGTCTAATAGGACCAGCCC 58.884 52.381 0.00 0.00 37.37 5.19
1925 2136 2.116238 GTGTCTAATAGGACCAGCCCA 58.884 52.381 0.00 0.00 37.37 5.36
1926 2137 2.116238 TGTCTAATAGGACCAGCCCAC 58.884 52.381 0.00 0.00 37.37 4.61
1927 2138 2.116238 GTCTAATAGGACCAGCCCACA 58.884 52.381 0.00 0.00 37.37 4.17
1928 2139 2.116238 TCTAATAGGACCAGCCCACAC 58.884 52.381 0.00 0.00 37.37 3.82
1929 2140 0.828022 TAATAGGACCAGCCCACACG 59.172 55.000 0.00 0.00 37.37 4.49
1930 2141 1.198759 AATAGGACCAGCCCACACGT 61.199 55.000 0.00 0.00 37.37 4.49
1931 2142 0.324923 ATAGGACCAGCCCACACGTA 60.325 55.000 0.00 0.00 37.37 3.57
1932 2143 0.968901 TAGGACCAGCCCACACGTAG 60.969 60.000 0.00 0.00 37.37 3.51
1969 2180 0.666374 GTGGGCAAAACAACTAGCGT 59.334 50.000 0.00 0.00 0.00 5.07
1979 2190 1.002366 CAACTAGCGTCCACATGCTC 58.998 55.000 0.00 0.00 41.41 4.26
2028 2241 1.202830 ACCTACGTGTGGGCAAAATGA 60.203 47.619 12.88 0.00 34.14 2.57
2038 2251 1.555477 GGCAAAATGAATAACGCCCG 58.445 50.000 0.00 0.00 33.31 6.13
2054 2267 2.336478 CCGCACGACCTCTCTCAGT 61.336 63.158 0.00 0.00 0.00 3.41
2122 2335 1.078497 CCGCAGTTGCCATGGTCTA 60.078 57.895 14.67 0.00 37.91 2.59
2147 2360 4.069304 CCCTCTTCAATGTCCGTTTAACA 58.931 43.478 0.00 0.00 0.00 2.41
2159 2372 2.486203 CCGTTTAACAGCAGTTGCCATA 59.514 45.455 4.52 0.00 43.38 2.74
2172 2385 2.134201 TGCCATATCGCTGAACTACG 57.866 50.000 0.00 0.00 0.00 3.51
2195 2408 1.070914 TGCCATGTCGGACAACTACAA 59.929 47.619 15.72 0.00 36.56 2.41
2200 2413 2.839975 TGTCGGACAACTACAATTGCA 58.160 42.857 8.68 0.00 32.47 4.08
2236 2450 2.719739 CAGTTGCCATCTCAGGTCAAT 58.280 47.619 0.00 0.00 31.03 2.57
2288 2504 4.323417 TGTTGTCATGTATGGTCTGGTTC 58.677 43.478 0.00 0.00 0.00 3.62
2416 2632 2.567615 AGGAGTTGCCACCTACTAACAG 59.432 50.000 0.00 0.00 40.02 3.16
2453 2670 5.932303 GTGTAGAGCTACAAAAAGACATGGA 59.068 40.000 11.59 0.00 46.33 3.41
2465 2684 8.558700 ACAAAAAGACATGGAAAAATAACATGC 58.441 29.630 0.00 0.00 44.32 4.06
2466 2685 7.671495 AAAAGACATGGAAAAATAACATGCC 57.329 32.000 0.00 0.00 44.32 4.40
2468 2687 4.776837 AGACATGGAAAAATAACATGCCCA 59.223 37.500 0.00 0.00 44.32 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.654863 CCTGGGCCTAATACCAAACAG 58.345 52.381 4.53 0.00 36.09 3.16
2 3 1.063942 AGCCTGGGCCTAATACCAAAC 60.064 52.381 4.53 0.00 43.17 2.93
6 7 2.237392 CAGATAGCCTGGGCCTAATACC 59.763 54.545 4.53 0.00 43.17 2.73
7 8 2.355209 GCAGATAGCCTGGGCCTAATAC 60.355 54.545 4.53 0.00 43.13 1.89
8 9 1.909302 GCAGATAGCCTGGGCCTAATA 59.091 52.381 4.53 0.00 43.13 0.98
9 10 0.695347 GCAGATAGCCTGGGCCTAAT 59.305 55.000 4.53 0.00 43.13 1.73
10 11 1.758440 CGCAGATAGCCTGGGCCTAA 61.758 60.000 4.53 0.00 46.58 2.69
11 12 2.210013 CGCAGATAGCCTGGGCCTA 61.210 63.158 4.53 0.00 46.58 3.93
12 13 3.554342 CGCAGATAGCCTGGGCCT 61.554 66.667 4.53 0.00 46.58 5.19
20 21 0.952984 GATGAAGGGGCGCAGATAGC 60.953 60.000 10.83 0.00 40.87 2.97
21 22 0.394192 TGATGAAGGGGCGCAGATAG 59.606 55.000 10.83 0.00 0.00 2.08
22 23 0.836606 TTGATGAAGGGGCGCAGATA 59.163 50.000 10.83 0.00 0.00 1.98
23 24 0.749454 GTTGATGAAGGGGCGCAGAT 60.749 55.000 10.83 0.00 0.00 2.90
24 25 1.377202 GTTGATGAAGGGGCGCAGA 60.377 57.895 10.83 0.00 0.00 4.26
25 26 1.377725 AGTTGATGAAGGGGCGCAG 60.378 57.895 10.83 0.00 0.00 5.18
26 27 1.675310 CAGTTGATGAAGGGGCGCA 60.675 57.895 10.83 0.00 0.00 6.09
27 28 0.960364 TTCAGTTGATGAAGGGGCGC 60.960 55.000 0.00 0.00 43.09 6.53
28 29 3.248043 TTCAGTTGATGAAGGGGCG 57.752 52.632 0.00 0.00 43.09 6.13
35 36 4.401202 TCGCTACACCTATTCAGTTGATGA 59.599 41.667 0.00 0.00 35.62 2.92
36 37 4.504461 GTCGCTACACCTATTCAGTTGATG 59.496 45.833 0.00 0.00 0.00 3.07
37 38 4.683832 GTCGCTACACCTATTCAGTTGAT 58.316 43.478 0.00 0.00 0.00 2.57
38 39 3.427098 CGTCGCTACACCTATTCAGTTGA 60.427 47.826 0.00 0.00 0.00 3.18
39 40 2.852413 CGTCGCTACACCTATTCAGTTG 59.148 50.000 0.00 0.00 0.00 3.16
40 41 2.159282 CCGTCGCTACACCTATTCAGTT 60.159 50.000 0.00 0.00 0.00 3.16
41 42 1.404391 CCGTCGCTACACCTATTCAGT 59.596 52.381 0.00 0.00 0.00 3.41
42 43 1.404391 ACCGTCGCTACACCTATTCAG 59.596 52.381 0.00 0.00 0.00 3.02
43 44 1.466856 ACCGTCGCTACACCTATTCA 58.533 50.000 0.00 0.00 0.00 2.57
44 45 2.573941 AACCGTCGCTACACCTATTC 57.426 50.000 0.00 0.00 0.00 1.75
45 46 2.028748 ACAAACCGTCGCTACACCTATT 60.029 45.455 0.00 0.00 0.00 1.73
46 47 1.547372 ACAAACCGTCGCTACACCTAT 59.453 47.619 0.00 0.00 0.00 2.57
47 48 0.961019 ACAAACCGTCGCTACACCTA 59.039 50.000 0.00 0.00 0.00 3.08
48 49 0.105408 AACAAACCGTCGCTACACCT 59.895 50.000 0.00 0.00 0.00 4.00
49 50 0.233848 CAACAAACCGTCGCTACACC 59.766 55.000 0.00 0.00 0.00 4.16
50 51 0.383860 GCAACAAACCGTCGCTACAC 60.384 55.000 0.00 0.00 0.00 2.90
51 52 0.531090 AGCAACAAACCGTCGCTACA 60.531 50.000 0.00 0.00 0.00 2.74
52 53 0.584876 AAGCAACAAACCGTCGCTAC 59.415 50.000 0.00 0.00 31.36 3.58
53 54 2.063266 CTAAGCAACAAACCGTCGCTA 58.937 47.619 0.00 0.00 31.36 4.26
54 55 0.865769 CTAAGCAACAAACCGTCGCT 59.134 50.000 0.00 0.00 33.45 4.93
55 56 0.863144 TCTAAGCAACAAACCGTCGC 59.137 50.000 0.00 0.00 0.00 5.19
56 57 1.136721 CGTCTAAGCAACAAACCGTCG 60.137 52.381 0.00 0.00 0.00 5.12
57 58 1.193874 CCGTCTAAGCAACAAACCGTC 59.806 52.381 0.00 0.00 0.00 4.79
58 59 1.223187 CCGTCTAAGCAACAAACCGT 58.777 50.000 0.00 0.00 0.00 4.83
59 60 0.110373 GCCGTCTAAGCAACAAACCG 60.110 55.000 0.00 0.00 0.00 4.44
60 61 0.110373 CGCCGTCTAAGCAACAAACC 60.110 55.000 0.00 0.00 0.00 3.27
61 62 0.110373 CCGCCGTCTAAGCAACAAAC 60.110 55.000 0.00 0.00 0.00 2.93
62 63 1.847890 GCCGCCGTCTAAGCAACAAA 61.848 55.000 0.00 0.00 0.00 2.83
63 64 2.322081 GCCGCCGTCTAAGCAACAA 61.322 57.895 0.00 0.00 0.00 2.83
64 65 2.725203 AAGCCGCCGTCTAAGCAACA 62.725 55.000 0.00 0.00 0.00 3.33
65 66 1.574702 AAAGCCGCCGTCTAAGCAAC 61.575 55.000 0.00 0.00 0.00 4.17
66 67 0.037139 TAAAGCCGCCGTCTAAGCAA 60.037 50.000 0.00 0.00 0.00 3.91
67 68 0.459585 CTAAAGCCGCCGTCTAAGCA 60.460 55.000 0.00 0.00 0.00 3.91
68 69 0.459759 ACTAAAGCCGCCGTCTAAGC 60.460 55.000 0.00 0.00 0.00 3.09
69 70 2.005971 AACTAAAGCCGCCGTCTAAG 57.994 50.000 0.00 0.00 0.00 2.18
70 71 2.460757 AAACTAAAGCCGCCGTCTAA 57.539 45.000 0.00 0.00 0.00 2.10
71 72 2.460757 AAAACTAAAGCCGCCGTCTA 57.539 45.000 0.00 0.00 0.00 2.59
72 73 2.071540 GTAAAACTAAAGCCGCCGTCT 58.928 47.619 0.00 0.00 0.00 4.18
73 74 2.071540 AGTAAAACTAAAGCCGCCGTC 58.928 47.619 0.00 0.00 0.00 4.79
74 75 2.174363 AGTAAAACTAAAGCCGCCGT 57.826 45.000 0.00 0.00 0.00 5.68
75 76 4.093850 ACAATAGTAAAACTAAAGCCGCCG 59.906 41.667 0.00 0.00 33.89 6.46
76 77 5.556355 ACAATAGTAAAACTAAAGCCGCC 57.444 39.130 0.00 0.00 33.89 6.13
77 78 7.849515 GTCATACAATAGTAAAACTAAAGCCGC 59.150 37.037 0.00 0.00 33.89 6.53
78 79 9.095065 AGTCATACAATAGTAAAACTAAAGCCG 57.905 33.333 0.00 0.00 33.89 5.52
91 92 9.436957 CAAGACCTTACAAAGTCATACAATAGT 57.563 33.333 0.00 0.00 0.00 2.12
92 93 9.436957 ACAAGACCTTACAAAGTCATACAATAG 57.563 33.333 0.00 0.00 0.00 1.73
93 94 9.214957 CACAAGACCTTACAAAGTCATACAATA 57.785 33.333 0.00 0.00 0.00 1.90
94 95 7.936847 TCACAAGACCTTACAAAGTCATACAAT 59.063 33.333 0.00 0.00 0.00 2.71
95 96 7.276658 TCACAAGACCTTACAAAGTCATACAA 58.723 34.615 0.00 0.00 0.00 2.41
96 97 6.822442 TCACAAGACCTTACAAAGTCATACA 58.178 36.000 0.00 0.00 0.00 2.29
97 98 7.152645 TCTCACAAGACCTTACAAAGTCATAC 58.847 38.462 0.00 0.00 0.00 2.39
98 99 7.297936 TCTCACAAGACCTTACAAAGTCATA 57.702 36.000 0.00 0.00 0.00 2.15
99 100 6.174720 TCTCACAAGACCTTACAAAGTCAT 57.825 37.500 0.00 0.00 0.00 3.06
100 101 5.607939 TCTCACAAGACCTTACAAAGTCA 57.392 39.130 0.00 0.00 0.00 3.41
101 102 8.603242 TTATTCTCACAAGACCTTACAAAGTC 57.397 34.615 0.00 0.00 0.00 3.01
102 103 9.574516 AATTATTCTCACAAGACCTTACAAAGT 57.425 29.630 0.00 0.00 0.00 2.66
116 117 9.661563 ACGGTCACTTTATTAATTATTCTCACA 57.338 29.630 0.00 0.00 0.00 3.58
125 126 7.647715 GCAATGCATACGGTCACTTTATTAATT 59.352 33.333 0.00 0.00 0.00 1.40
126 127 7.138736 GCAATGCATACGGTCACTTTATTAAT 58.861 34.615 0.00 0.00 0.00 1.40
127 128 6.491394 GCAATGCATACGGTCACTTTATTAA 58.509 36.000 0.00 0.00 0.00 1.40
128 129 5.277106 CGCAATGCATACGGTCACTTTATTA 60.277 40.000 5.91 0.00 0.00 0.98
129 130 4.495679 CGCAATGCATACGGTCACTTTATT 60.496 41.667 5.91 0.00 0.00 1.40
130 131 3.002246 CGCAATGCATACGGTCACTTTAT 59.998 43.478 5.91 0.00 0.00 1.40
131 132 2.350192 CGCAATGCATACGGTCACTTTA 59.650 45.455 5.91 0.00 0.00 1.85
132 133 1.130373 CGCAATGCATACGGTCACTTT 59.870 47.619 5.91 0.00 0.00 2.66
133 134 0.726827 CGCAATGCATACGGTCACTT 59.273 50.000 5.91 0.00 0.00 3.16
134 135 1.089481 CCGCAATGCATACGGTCACT 61.089 55.000 25.45 0.00 42.01 3.41
135 136 1.351707 CCGCAATGCATACGGTCAC 59.648 57.895 25.45 1.35 42.01 3.67
136 137 1.817520 CCCGCAATGCATACGGTCA 60.818 57.895 29.04 0.00 45.49 4.02
137 138 1.373590 AACCCGCAATGCATACGGTC 61.374 55.000 29.04 6.85 45.49 4.79
138 139 0.107606 TAACCCGCAATGCATACGGT 60.108 50.000 29.04 19.10 45.49 4.83
139 140 1.196808 GATAACCCGCAATGCATACGG 59.803 52.381 26.36 26.36 46.50 4.02
140 141 1.196808 GGATAACCCGCAATGCATACG 59.803 52.381 13.55 13.55 0.00 3.06
141 142 2.484264 GAGGATAACCCGCAATGCATAC 59.516 50.000 5.91 0.00 40.87 2.39
142 143 2.552155 GGAGGATAACCCGCAATGCATA 60.552 50.000 5.91 0.00 40.87 3.14
143 144 1.609208 GAGGATAACCCGCAATGCAT 58.391 50.000 5.91 0.00 40.87 3.96
144 145 0.465460 GGAGGATAACCCGCAATGCA 60.465 55.000 5.91 0.00 40.87 3.96
145 146 0.179018 AGGAGGATAACCCGCAATGC 60.179 55.000 0.00 0.00 40.87 3.56
146 147 2.348411 AAGGAGGATAACCCGCAATG 57.652 50.000 0.00 0.00 40.87 2.82
147 148 3.382083 AAAAGGAGGATAACCCGCAAT 57.618 42.857 0.00 0.00 40.87 3.56
148 149 2.891191 AAAAGGAGGATAACCCGCAA 57.109 45.000 0.00 0.00 40.87 4.85
149 150 2.891191 AAAAAGGAGGATAACCCGCA 57.109 45.000 0.00 0.00 40.87 5.69
167 168 4.559300 GCTGCTCCAGATGTGCTTTAAAAA 60.559 41.667 0.00 0.00 34.56 1.94
168 169 3.057315 GCTGCTCCAGATGTGCTTTAAAA 60.057 43.478 0.00 0.00 34.56 1.52
169 170 2.489329 GCTGCTCCAGATGTGCTTTAAA 59.511 45.455 0.00 0.00 34.56 1.52
170 171 2.086869 GCTGCTCCAGATGTGCTTTAA 58.913 47.619 0.00 0.00 34.56 1.52
171 172 1.679944 GGCTGCTCCAGATGTGCTTTA 60.680 52.381 0.00 0.00 34.56 1.85
172 173 0.964358 GGCTGCTCCAGATGTGCTTT 60.964 55.000 0.00 0.00 34.56 3.51
173 174 1.378250 GGCTGCTCCAGATGTGCTT 60.378 57.895 0.00 0.00 34.56 3.91
174 175 2.271497 GGCTGCTCCAGATGTGCT 59.729 61.111 0.00 0.00 34.56 4.40
175 176 3.200593 CGGCTGCTCCAGATGTGC 61.201 66.667 0.00 0.00 32.44 4.57
176 177 2.513204 CCGGCTGCTCCAGATGTG 60.513 66.667 0.00 0.00 32.44 3.21
185 186 4.660938 GGTTTGGGACCGGCTGCT 62.661 66.667 0.00 0.00 39.00 4.24
228 231 3.059603 GCCTCGAGCGACCATAAAA 57.940 52.632 6.99 0.00 0.00 1.52
332 335 0.601311 CCCTGCTAGCCTATCGTTGC 60.601 60.000 13.29 0.00 0.00 4.17
613 637 3.504520 TCGCATGCTGTAACGGATATAGA 59.495 43.478 17.13 0.00 0.00 1.98
614 638 3.833442 TCGCATGCTGTAACGGATATAG 58.167 45.455 17.13 0.00 0.00 1.31
651 684 1.234821 CTGGGAAGTTGTTGCGCTAA 58.765 50.000 9.73 0.00 0.00 3.09
652 685 1.234615 GCTGGGAAGTTGTTGCGCTA 61.235 55.000 9.73 0.00 0.00 4.26
722 772 0.969894 ACGACTTAACAGCTCAGCCT 59.030 50.000 0.00 0.00 0.00 4.58
723 773 1.351153 GACGACTTAACAGCTCAGCC 58.649 55.000 0.00 0.00 0.00 4.85
781 838 5.221322 GCTTTTTCAAAGGAGAGATTGTGGT 60.221 40.000 0.00 0.00 0.00 4.16
793 850 2.533942 CCGTTTCGTGCTTTTTCAAAGG 59.466 45.455 0.00 0.00 0.00 3.11
798 855 0.316360 TCGCCGTTTCGTGCTTTTTC 60.316 50.000 0.00 0.00 0.00 2.29
960 1032 3.892588 GCAGGTATATAGCTAGCCTAGGG 59.107 52.174 12.13 1.34 31.93 3.53
979 1051 0.599728 GCTGAGCGGGATAAGAGCAG 60.600 60.000 0.00 0.00 0.00 4.24
980 1052 1.443407 GCTGAGCGGGATAAGAGCA 59.557 57.895 0.00 0.00 0.00 4.26
982 1054 0.683973 ATGGCTGAGCGGGATAAGAG 59.316 55.000 0.00 0.00 0.00 2.85
987 1059 4.575973 GCCATGGCTGAGCGGGAT 62.576 66.667 29.98 0.00 38.26 3.85
1152 1239 1.277557 CTTCCAGGGTCTGTCTTCTGG 59.722 57.143 0.00 0.00 45.92 3.86
1201 1297 2.944557 CGCGACATCCGAGTCACG 60.945 66.667 0.00 0.00 41.76 4.35
1202 1298 2.579787 CCGCGACATCCGAGTCAC 60.580 66.667 8.23 0.00 41.76 3.67
1446 1545 2.620112 GCCGCAGCAGCAGAAGAAA 61.620 57.895 0.82 0.00 42.27 2.52
1515 1614 0.612732 CCCAATGGCAAGCAGAAGGA 60.613 55.000 0.00 0.00 0.00 3.36
1624 1751 3.499338 TGCAATGGAGTCCAACAAGATT 58.501 40.909 17.71 1.21 36.95 2.40
1663 1790 0.242825 TGGTTCCTCGCAACTAGACG 59.757 55.000 0.00 0.00 0.00 4.18
1763 1973 2.203922 TGGCAGGCAGTGAGGGTA 60.204 61.111 0.00 0.00 0.00 3.69
1770 1980 4.008933 GAGACGGTGGCAGGCAGT 62.009 66.667 0.00 0.00 0.00 4.40
1792 2002 1.168714 GTGATCCACCAACAGCCTTC 58.831 55.000 0.00 0.00 0.00 3.46
1832 2042 4.919168 TCGGCGTCCTAATAATTTGATACG 59.081 41.667 6.85 0.00 0.00 3.06
1868 2078 2.305927 CCAGATCCCTTAACGCCCATAT 59.694 50.000 0.00 0.00 0.00 1.78
1870 2080 0.474184 CCAGATCCCTTAACGCCCAT 59.526 55.000 0.00 0.00 0.00 4.00
1903 2113 2.706190 GGGCTGGTCCTATTAGACACAT 59.294 50.000 0.00 0.00 38.59 3.21
1913 2124 0.968901 CTACGTGTGGGCTGGTCCTA 60.969 60.000 0.00 0.00 34.39 2.94
1920 2131 3.391382 GGGCTCTACGTGTGGGCT 61.391 66.667 13.53 0.00 0.00 5.19
1921 2132 3.702048 TGGGCTCTACGTGTGGGC 61.702 66.667 0.00 1.91 0.00 5.36
1922 2133 2.264794 GTGGGCTCTACGTGTGGG 59.735 66.667 0.00 0.00 0.00 4.61
1923 2134 1.374252 GTGTGGGCTCTACGTGTGG 60.374 63.158 0.00 0.00 0.00 4.17
1924 2135 1.733041 CGTGTGGGCTCTACGTGTG 60.733 63.158 0.00 0.00 33.48 3.82
1925 2136 2.649034 CGTGTGGGCTCTACGTGT 59.351 61.111 0.00 0.00 33.48 4.49
1928 2139 0.098376 GTAGACGTGTGGGCTCTACG 59.902 60.000 11.53 11.53 42.98 3.51
1929 2140 0.098376 CGTAGACGTGTGGGCTCTAC 59.902 60.000 0.00 0.00 35.15 2.59
1930 2141 2.474561 CGTAGACGTGTGGGCTCTA 58.525 57.895 0.00 0.00 34.11 2.43
1931 2142 3.275088 CGTAGACGTGTGGGCTCT 58.725 61.111 0.00 0.00 34.11 4.09
2028 2241 2.816520 GGTCGTGCGGGCGTTATT 60.817 61.111 0.00 0.00 0.00 1.40
2038 2251 0.109504 GTGACTGAGAGAGGTCGTGC 60.110 60.000 0.00 0.00 35.45 5.34
2122 2335 1.645710 ACGGACATTGAAGAGGGTCT 58.354 50.000 0.00 0.00 0.00 3.85
2147 2360 0.178767 TCAGCGATATGGCAACTGCT 59.821 50.000 12.54 0.00 41.70 4.24
2172 2385 1.453155 AGTTGTCCGACATGGCAATC 58.547 50.000 1.09 0.00 36.56 2.67
2200 2413 1.696063 ACTGCAGTTGAGCAACCATT 58.304 45.000 15.25 0.00 45.13 3.16
2236 2450 3.229293 TGTCCAAAATGGCATCTGTCAA 58.771 40.909 0.00 0.00 37.47 3.18
2288 2504 8.246180 AGTTTTCAAATCATGGCAACTATAGTG 58.754 33.333 6.06 2.23 32.88 2.74
2362 2578 8.121305 TCAAATCATGGCAACTGTAATAAACT 57.879 30.769 0.00 0.00 37.61 2.66
2368 2584 5.988561 GGTTTTCAAATCATGGCAACTGTAA 59.011 36.000 0.00 0.00 37.61 2.41
2435 2651 9.476202 GTTATTTTTCCATGTCTTTTTGTAGCT 57.524 29.630 0.00 0.00 0.00 3.32
2453 2670 6.926630 TCTTTACCTGGGCATGTTATTTTT 57.073 33.333 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.