Multiple sequence alignment - TraesCS3B01G269800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G269800 chr3B 100.000 6347 0 0 1 6347 434417350 434423696 0.000000e+00 11721.0
1 TraesCS3B01G269800 chr3B 91.045 67 5 1 149 215 823797283 823797218 8.760000e-14 89.8
2 TraesCS3B01G269800 chr3D 91.624 3510 177 51 216 3676 336584560 336588001 0.000000e+00 4745.0
3 TraesCS3B01G269800 chr3D 91.108 1687 77 28 3762 5401 336588369 336590029 0.000000e+00 2217.0
4 TraesCS3B01G269800 chr3D 90.000 510 28 8 5860 6347 336590873 336591381 6.940000e-179 638.0
5 TraesCS3B01G269800 chr3D 92.226 283 19 3 5414 5695 336590597 336590877 1.280000e-106 398.0
6 TraesCS3B01G269800 chr3D 91.089 101 7 2 3668 3767 336588155 336588254 1.110000e-27 135.0
7 TraesCS3B01G269800 chr3D 82.692 104 8 6 5705 5804 386609546 386609643 4.080000e-12 84.2
8 TraesCS3B01G269800 chr3A 91.211 2105 109 33 256 2345 453930083 453932126 0.000000e+00 2793.0
9 TraesCS3B01G269800 chr3A 90.831 1745 92 31 3490 5192 453932896 453934614 0.000000e+00 2274.0
10 TraesCS3B01G269800 chr3A 92.932 764 43 10 2416 3173 453932140 453932898 0.000000e+00 1101.0
11 TraesCS3B01G269800 chr3A 89.894 564 34 9 5805 6347 453935358 453935919 0.000000e+00 704.0
12 TraesCS3B01G269800 chr3A 89.306 346 19 10 5378 5707 453934841 453935184 9.840000e-113 418.0
13 TraesCS3B01G269800 chr3A 85.354 198 14 8 5191 5387 453934641 453934824 2.340000e-44 191.0
14 TraesCS3B01G269800 chr4D 88.889 81 6 3 5724 5802 506631558 506631637 5.240000e-16 97.1
15 TraesCS3B01G269800 chr4D 87.059 85 3 5 5724 5802 447746541 447746459 8.760000e-14 89.8
16 TraesCS3B01G269800 chr2D 89.744 78 2 3 5729 5802 305517747 305517822 1.880000e-15 95.3
17 TraesCS3B01G269800 chr2D 88.136 59 6 1 5805 5862 305517842 305517900 1.140000e-07 69.4
18 TraesCS3B01G269800 chr7A 89.474 76 2 3 5729 5800 651436397 651436324 2.440000e-14 91.6
19 TraesCS3B01G269800 chr6D 89.189 74 6 1 5729 5802 211672751 211672680 2.440000e-14 91.6
20 TraesCS3B01G269800 chr6D 92.500 40 3 0 171 210 13140986 13141025 2.470000e-04 58.4
21 TraesCS3B01G269800 chr7B 88.462 78 3 3 5729 5802 678722547 678722622 8.760000e-14 89.8
22 TraesCS3B01G269800 chr7B 89.474 57 4 2 5807 5861 40917593 40917537 3.170000e-08 71.3
23 TraesCS3B01G269800 chr7D 86.747 83 5 3 5723 5801 259274158 259274238 3.150000e-13 87.9
24 TraesCS3B01G269800 chr7D 88.136 59 5 2 5805 5862 605155767 605155824 1.140000e-07 69.4
25 TraesCS3B01G269800 chr7D 96.875 32 1 0 166 197 529831062 529831093 3.000000e-03 54.7
26 TraesCS3B01G269800 chr1A 86.747 83 5 2 5724 5802 564367397 564367317 3.150000e-13 87.9
27 TraesCS3B01G269800 chr1A 89.655 58 4 2 5805 5861 570275337 570275281 8.830000e-09 73.1
28 TraesCS3B01G269800 chr1A 86.000 50 5 2 5702 5751 562486150 562486197 1.100000e-02 52.8
29 TraesCS3B01G269800 chr6B 88.333 60 5 2 5805 5863 36133609 36133667 3.170000e-08 71.3
30 TraesCS3B01G269800 chr4B 86.364 66 5 4 5805 5869 606916819 606916757 1.140000e-07 69.4
31 TraesCS3B01G269800 chrUn 86.885 61 6 2 5805 5864 81477695 81477636 4.110000e-07 67.6
32 TraesCS3B01G269800 chrUn 100.000 28 0 0 892 919 79628161 79628188 1.100000e-02 52.8
33 TraesCS3B01G269800 chr5D 80.723 83 14 2 5805 5886 391977254 391977173 5.310000e-06 63.9
34 TraesCS3B01G269800 chr6A 100.000 28 0 0 892 919 614105969 614105942 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G269800 chr3B 434417350 434423696 6346 False 11721.000000 11721 100.000000 1 6347 1 chr3B.!!$F1 6346
1 TraesCS3B01G269800 chr3D 336584560 336591381 6821 False 1626.600000 4745 91.209400 216 6347 5 chr3D.!!$F2 6131
2 TraesCS3B01G269800 chr3A 453930083 453935919 5836 False 1246.833333 2793 89.921333 256 6347 6 chr3A.!!$F1 6091

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
159 160 0.026803 GATGCAGCCGATTGAACGTC 59.973 55.0 0.00 0.00 0.00 4.34 F
1392 1410 0.323725 ATGATCACAAGTGGGTGCCC 60.324 55.0 0.00 0.00 38.66 5.36 F
1581 1599 0.107017 CAGGCCATCCTTCCGTTGAT 60.107 55.0 5.01 0.00 41.93 2.57 F
2124 2149 0.247460 TGGTGCTACTGCTACAGCTG 59.753 55.0 13.48 13.48 44.21 4.24 F
3333 3375 0.443869 CTCTCCGTTCCAAATGCGTG 59.556 55.0 0.00 0.00 0.00 5.34 F
5112 5479 0.394565 GGGCGATGAAGGCTACATCT 59.605 55.0 0.00 0.00 41.06 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1581 1599 0.322456 GAGCACTACCCAACCATGCA 60.322 55.000 0.00 0.0 38.79 3.96 R
3320 3362 1.067635 AGAATGGCACGCATTTGGAAC 60.068 47.619 0.00 0.0 0.00 3.62 R
3440 3488 0.387622 CCGTGTGGCATTGAAAGCAG 60.388 55.000 0.00 0.0 0.00 4.24 R
3639 3692 2.147958 TGCCACTGTACGGAAAATCAC 58.852 47.619 9.17 0.0 0.00 3.06 R
5171 5542 0.256464 ACAAAACACCAGGTCCCGAA 59.744 50.000 0.00 0.0 0.00 4.30 R
6144 7222 0.458370 GTGGCCAATCATTTGCGTCC 60.458 55.000 7.24 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.657237 ACTTTGGCTCGTCCTCCG 59.343 61.111 0.00 0.00 35.26 4.63
18 19 2.815647 CTTTGGCTCGTCCTCCGC 60.816 66.667 0.00 0.00 36.19 5.54
19 20 4.388499 TTTGGCTCGTCCTCCGCC 62.388 66.667 0.00 0.00 44.02 6.13
63 64 2.272146 CCAGGGGTTGGTCGGATG 59.728 66.667 0.00 0.00 42.41 3.51
64 65 2.272146 CAGGGGTTGGTCGGATGG 59.728 66.667 0.00 0.00 0.00 3.51
65 66 3.015145 AGGGGTTGGTCGGATGGG 61.015 66.667 0.00 0.00 0.00 4.00
66 67 3.335729 GGGGTTGGTCGGATGGGT 61.336 66.667 0.00 0.00 0.00 4.51
67 68 1.996748 GGGGTTGGTCGGATGGGTA 60.997 63.158 0.00 0.00 0.00 3.69
68 69 1.525442 GGGTTGGTCGGATGGGTAG 59.475 63.158 0.00 0.00 0.00 3.18
69 70 1.153229 GGTTGGTCGGATGGGTAGC 60.153 63.158 0.00 0.00 0.00 3.58
70 71 1.600107 GTTGGTCGGATGGGTAGCA 59.400 57.895 0.00 0.00 0.00 3.49
71 72 0.462047 GTTGGTCGGATGGGTAGCAG 60.462 60.000 0.00 0.00 0.00 4.24
72 73 2.109181 GGTCGGATGGGTAGCAGC 59.891 66.667 0.00 0.00 0.00 5.25
73 74 2.279517 GTCGGATGGGTAGCAGCG 60.280 66.667 0.00 0.00 0.00 5.18
74 75 3.536917 TCGGATGGGTAGCAGCGG 61.537 66.667 0.00 0.00 0.00 5.52
75 76 4.609018 CGGATGGGTAGCAGCGGG 62.609 72.222 0.00 0.00 0.00 6.13
76 77 4.256180 GGATGGGTAGCAGCGGGG 62.256 72.222 0.00 0.00 0.00 5.73
77 78 3.161450 GATGGGTAGCAGCGGGGA 61.161 66.667 0.00 0.00 0.00 4.81
78 79 2.690881 ATGGGTAGCAGCGGGGAA 60.691 61.111 0.00 0.00 0.00 3.97
79 80 2.265467 GATGGGTAGCAGCGGGGAAA 62.265 60.000 0.00 0.00 0.00 3.13
80 81 2.124695 GGGTAGCAGCGGGGAAAG 60.125 66.667 0.00 0.00 0.00 2.62
81 82 2.666098 GGGTAGCAGCGGGGAAAGA 61.666 63.158 0.00 0.00 0.00 2.52
82 83 1.153349 GGTAGCAGCGGGGAAAGAG 60.153 63.158 0.00 0.00 0.00 2.85
83 84 1.614241 GGTAGCAGCGGGGAAAGAGA 61.614 60.000 0.00 0.00 0.00 3.10
84 85 0.249398 GTAGCAGCGGGGAAAGAGAA 59.751 55.000 0.00 0.00 0.00 2.87
85 86 0.981183 TAGCAGCGGGGAAAGAGAAA 59.019 50.000 0.00 0.00 0.00 2.52
86 87 0.322008 AGCAGCGGGGAAAGAGAAAG 60.322 55.000 0.00 0.00 0.00 2.62
87 88 0.606673 GCAGCGGGGAAAGAGAAAGT 60.607 55.000 0.00 0.00 0.00 2.66
88 89 1.443802 CAGCGGGGAAAGAGAAAGTC 58.556 55.000 0.00 0.00 0.00 3.01
89 90 1.056660 AGCGGGGAAAGAGAAAGTCA 58.943 50.000 0.00 0.00 0.00 3.41
90 91 1.420138 AGCGGGGAAAGAGAAAGTCAA 59.580 47.619 0.00 0.00 0.00 3.18
91 92 1.535896 GCGGGGAAAGAGAAAGTCAAC 59.464 52.381 0.00 0.00 0.00 3.18
92 93 1.798813 CGGGGAAAGAGAAAGTCAACG 59.201 52.381 0.00 0.00 0.00 4.10
93 94 2.805657 CGGGGAAAGAGAAAGTCAACGT 60.806 50.000 0.00 0.00 0.00 3.99
94 95 3.553508 CGGGGAAAGAGAAAGTCAACGTA 60.554 47.826 0.00 0.00 0.00 3.57
95 96 3.995048 GGGGAAAGAGAAAGTCAACGTAG 59.005 47.826 0.00 0.00 0.00 3.51
96 97 4.262335 GGGGAAAGAGAAAGTCAACGTAGA 60.262 45.833 0.00 0.00 0.00 2.59
97 98 5.295152 GGGAAAGAGAAAGTCAACGTAGAA 58.705 41.667 0.00 0.00 0.00 2.10
98 99 5.756833 GGGAAAGAGAAAGTCAACGTAGAAA 59.243 40.000 0.00 0.00 0.00 2.52
99 100 6.073711 GGGAAAGAGAAAGTCAACGTAGAAAG 60.074 42.308 0.00 0.00 0.00 2.62
100 101 6.700520 GGAAAGAGAAAGTCAACGTAGAAAGA 59.299 38.462 0.00 0.00 0.00 2.52
101 102 7.224167 GGAAAGAGAAAGTCAACGTAGAAAGAA 59.776 37.037 0.00 0.00 0.00 2.52
102 103 7.701809 AAGAGAAAGTCAACGTAGAAAGAAG 57.298 36.000 0.00 0.00 0.00 2.85
103 104 5.692654 AGAGAAAGTCAACGTAGAAAGAAGC 59.307 40.000 0.00 0.00 0.00 3.86
104 105 5.357257 AGAAAGTCAACGTAGAAAGAAGCA 58.643 37.500 0.00 0.00 0.00 3.91
105 106 5.815740 AGAAAGTCAACGTAGAAAGAAGCAA 59.184 36.000 0.00 0.00 0.00 3.91
106 107 6.315393 AGAAAGTCAACGTAGAAAGAAGCAAA 59.685 34.615 0.00 0.00 0.00 3.68
107 108 5.659048 AGTCAACGTAGAAAGAAGCAAAG 57.341 39.130 0.00 0.00 0.00 2.77
108 109 4.511826 AGTCAACGTAGAAAGAAGCAAAGG 59.488 41.667 0.00 0.00 0.00 3.11
109 110 3.813166 TCAACGTAGAAAGAAGCAAAGGG 59.187 43.478 0.00 0.00 0.00 3.95
110 111 3.764237 ACGTAGAAAGAAGCAAAGGGA 57.236 42.857 0.00 0.00 0.00 4.20
111 112 4.287766 ACGTAGAAAGAAGCAAAGGGAT 57.712 40.909 0.00 0.00 0.00 3.85
112 113 5.416271 ACGTAGAAAGAAGCAAAGGGATA 57.584 39.130 0.00 0.00 0.00 2.59
113 114 5.801380 ACGTAGAAAGAAGCAAAGGGATAA 58.199 37.500 0.00 0.00 0.00 1.75
114 115 5.875359 ACGTAGAAAGAAGCAAAGGGATAAG 59.125 40.000 0.00 0.00 0.00 1.73
115 116 6.106673 CGTAGAAAGAAGCAAAGGGATAAGA 58.893 40.000 0.00 0.00 0.00 2.10
116 117 6.763610 CGTAGAAAGAAGCAAAGGGATAAGAT 59.236 38.462 0.00 0.00 0.00 2.40
117 118 7.254590 CGTAGAAAGAAGCAAAGGGATAAGATG 60.255 40.741 0.00 0.00 0.00 2.90
118 119 5.890419 AGAAAGAAGCAAAGGGATAAGATGG 59.110 40.000 0.00 0.00 0.00 3.51
119 120 4.176120 AGAAGCAAAGGGATAAGATGGG 57.824 45.455 0.00 0.00 0.00 4.00
120 121 3.529319 AGAAGCAAAGGGATAAGATGGGT 59.471 43.478 0.00 0.00 0.00 4.51
121 122 4.726825 AGAAGCAAAGGGATAAGATGGGTA 59.273 41.667 0.00 0.00 0.00 3.69
122 123 4.439253 AGCAAAGGGATAAGATGGGTAC 57.561 45.455 0.00 0.00 0.00 3.34
123 124 3.139077 GCAAAGGGATAAGATGGGTACG 58.861 50.000 0.00 0.00 0.00 3.67
124 125 3.139077 CAAAGGGATAAGATGGGTACGC 58.861 50.000 2.35 2.35 0.00 4.42
125 126 2.097110 AGGGATAAGATGGGTACGCA 57.903 50.000 15.63 15.63 0.00 5.24
126 127 2.404559 AGGGATAAGATGGGTACGCAA 58.595 47.619 17.26 0.16 0.00 4.85
127 128 2.104281 AGGGATAAGATGGGTACGCAAC 59.896 50.000 17.26 14.24 0.00 4.17
128 129 2.104281 GGGATAAGATGGGTACGCAACT 59.896 50.000 17.26 16.40 0.00 3.16
129 130 3.433173 GGGATAAGATGGGTACGCAACTT 60.433 47.826 29.39 29.39 0.00 2.66
130 131 3.808174 GGATAAGATGGGTACGCAACTTC 59.192 47.826 30.05 20.41 0.00 3.01
131 132 4.443034 GGATAAGATGGGTACGCAACTTCT 60.443 45.833 30.05 23.28 0.00 2.85
132 133 2.386661 AGATGGGTACGCAACTTCTG 57.613 50.000 17.26 0.00 0.00 3.02
133 134 1.066143 AGATGGGTACGCAACTTCTGG 60.066 52.381 17.26 0.00 0.00 3.86
134 135 0.676782 ATGGGTACGCAACTTCTGGC 60.677 55.000 17.26 0.00 0.00 4.85
135 136 2.038837 GGGTACGCAACTTCTGGCC 61.039 63.158 4.83 0.00 0.00 5.36
136 137 1.302192 GGTACGCAACTTCTGGCCA 60.302 57.895 4.71 4.71 0.00 5.36
137 138 1.574702 GGTACGCAACTTCTGGCCAC 61.575 60.000 0.00 0.00 0.00 5.01
138 139 1.666553 TACGCAACTTCTGGCCACG 60.667 57.895 0.00 4.37 0.00 4.94
139 140 2.372040 TACGCAACTTCTGGCCACGT 62.372 55.000 17.78 17.78 36.17 4.49
140 141 2.639286 GCAACTTCTGGCCACGTG 59.361 61.111 9.08 9.08 0.00 4.49
141 142 1.891919 GCAACTTCTGGCCACGTGA 60.892 57.895 19.30 0.00 0.00 4.35
142 143 1.237285 GCAACTTCTGGCCACGTGAT 61.237 55.000 19.30 0.00 0.00 3.06
143 144 0.518636 CAACTTCTGGCCACGTGATG 59.481 55.000 19.30 2.80 0.00 3.07
144 145 1.237285 AACTTCTGGCCACGTGATGC 61.237 55.000 19.30 12.98 0.00 3.91
145 146 1.672030 CTTCTGGCCACGTGATGCA 60.672 57.895 19.30 3.23 0.00 3.96
146 147 1.642037 CTTCTGGCCACGTGATGCAG 61.642 60.000 19.30 12.37 0.00 4.41
147 148 3.807538 CTGGCCACGTGATGCAGC 61.808 66.667 19.30 11.35 0.00 5.25
151 152 2.512286 CCACGTGATGCAGCCGAT 60.512 61.111 19.30 2.09 0.00 4.18
152 153 2.108514 CCACGTGATGCAGCCGATT 61.109 57.895 19.30 0.00 0.00 3.34
153 154 1.061411 CACGTGATGCAGCCGATTG 59.939 57.895 10.90 4.86 0.00 2.67
154 155 1.079197 ACGTGATGCAGCCGATTGA 60.079 52.632 17.52 0.00 0.00 2.57
155 156 0.673333 ACGTGATGCAGCCGATTGAA 60.673 50.000 17.52 0.00 0.00 2.69
156 157 0.247814 CGTGATGCAGCCGATTGAAC 60.248 55.000 0.00 0.00 0.00 3.18
157 158 0.247814 GTGATGCAGCCGATTGAACG 60.248 55.000 0.00 0.00 0.00 3.95
158 159 0.673333 TGATGCAGCCGATTGAACGT 60.673 50.000 0.00 0.00 0.00 3.99
159 160 0.026803 GATGCAGCCGATTGAACGTC 59.973 55.000 0.00 0.00 0.00 4.34
160 161 1.369091 ATGCAGCCGATTGAACGTCC 61.369 55.000 0.00 0.00 0.00 4.79
161 162 2.750888 GCAGCCGATTGAACGTCCC 61.751 63.158 0.00 0.00 0.00 4.46
162 163 2.125673 AGCCGATTGAACGTCCCG 60.126 61.111 0.00 0.00 0.00 5.14
163 164 2.433664 GCCGATTGAACGTCCCGT 60.434 61.111 0.00 0.00 43.97 5.28
164 165 2.736682 GCCGATTGAACGTCCCGTG 61.737 63.158 0.00 0.00 39.99 4.94
165 166 2.736682 CCGATTGAACGTCCCGTGC 61.737 63.158 0.00 0.00 39.99 5.34
166 167 2.776072 GATTGAACGTCCCGTGCG 59.224 61.111 0.00 0.00 38.41 5.34
167 168 3.362851 GATTGAACGTCCCGTGCGC 62.363 63.158 0.00 0.00 38.41 6.09
183 184 3.785499 GCGTCCGGCCGAAAGTTC 61.785 66.667 30.73 6.52 34.80 3.01
205 206 3.729698 GGCGCACCGGGTGTAAAC 61.730 66.667 26.86 14.12 35.75 2.01
206 207 2.973600 GCGCACCGGGTGTAAACA 60.974 61.111 26.86 0.00 35.75 2.83
207 208 2.329614 GCGCACCGGGTGTAAACAT 61.330 57.895 26.86 0.00 35.75 2.71
208 209 1.858372 GCGCACCGGGTGTAAACATT 61.858 55.000 26.86 0.00 35.75 2.71
209 210 0.594110 CGCACCGGGTGTAAACATTT 59.406 50.000 26.86 0.00 35.75 2.32
210 211 1.805345 CGCACCGGGTGTAAACATTTA 59.195 47.619 26.86 0.00 35.75 1.40
211 212 2.413108 CGCACCGGGTGTAAACATTTAC 60.413 50.000 26.86 7.44 42.51 2.01
212 213 2.095110 GCACCGGGTGTAAACATTTACC 60.095 50.000 26.86 3.33 41.72 2.85
213 214 3.147629 CACCGGGTGTAAACATTTACCA 58.852 45.455 19.15 0.00 41.72 3.25
214 215 3.568853 CACCGGGTGTAAACATTTACCAA 59.431 43.478 19.15 0.00 41.72 3.67
215 216 4.037684 CACCGGGTGTAAACATTTACCAAA 59.962 41.667 19.15 0.00 41.72 3.28
216 217 4.648307 ACCGGGTGTAAACATTTACCAAAA 59.352 37.500 6.32 0.00 41.72 2.44
217 218 5.221283 ACCGGGTGTAAACATTTACCAAAAG 60.221 40.000 6.32 2.16 41.72 2.27
218 219 5.009811 CCGGGTGTAAACATTTACCAAAAGA 59.990 40.000 11.11 0.00 41.72 2.52
219 220 6.461231 CCGGGTGTAAACATTTACCAAAAGAA 60.461 38.462 11.11 0.00 41.72 2.52
220 221 6.979238 CGGGTGTAAACATTTACCAAAAGAAA 59.021 34.615 11.11 0.00 41.72 2.52
221 222 7.491696 CGGGTGTAAACATTTACCAAAAGAAAA 59.508 33.333 11.11 0.00 41.72 2.29
222 223 9.163899 GGGTGTAAACATTTACCAAAAGAAAAA 57.836 29.630 11.11 0.00 41.72 1.94
255 256 8.586570 AATAGTGCTACTACTAGTACTGTACG 57.413 38.462 11.97 2.22 43.55 3.67
256 257 5.971763 AGTGCTACTACTAGTACTGTACGT 58.028 41.667 11.97 7.81 42.52 3.57
257 258 5.809562 AGTGCTACTACTAGTACTGTACGTG 59.190 44.000 11.97 10.96 42.52 4.49
258 259 5.578727 GTGCTACTACTAGTACTGTACGTGT 59.421 44.000 11.97 15.40 33.85 4.49
259 260 5.807520 TGCTACTACTAGTACTGTACGTGTC 59.192 44.000 17.34 7.92 0.00 3.67
260 261 5.807520 GCTACTACTAGTACTGTACGTGTCA 59.192 44.000 17.34 0.00 0.00 3.58
261 262 6.311445 GCTACTACTAGTACTGTACGTGTCAA 59.689 42.308 17.34 5.80 0.00 3.18
262 263 7.148573 GCTACTACTAGTACTGTACGTGTCAAA 60.149 40.741 17.34 5.28 0.00 2.69
263 264 7.126726 ACTACTAGTACTGTACGTGTCAAAG 57.873 40.000 17.34 13.46 0.00 2.77
264 265 5.368256 ACTAGTACTGTACGTGTCAAAGG 57.632 43.478 11.97 0.30 0.00 3.11
449 452 5.502606 CCTCTCGCTTTCGAAATTATTTCC 58.497 41.667 11.70 0.00 44.98 3.13
473 476 4.468689 CCTCCCTTCCGCGGAACC 62.469 72.222 35.81 0.00 0.00 3.62
574 577 3.487372 AGCTTGAAAGGTAAGGTTCCAC 58.513 45.455 0.00 0.00 34.49 4.02
664 672 3.451178 GGCCCCTAATCTGCTCGAATATA 59.549 47.826 0.00 0.00 0.00 0.86
679 687 7.497579 TGCTCGAATATATTTTTGCTTCACCTA 59.502 33.333 0.00 0.00 0.00 3.08
789 797 6.042143 GTGCAAATTATGGAACCCTACAATG 58.958 40.000 0.00 0.00 0.00 2.82
816 829 4.379813 GCTGTGTGTTTGATTTGATCCGAT 60.380 41.667 0.00 0.00 0.00 4.18
866 879 2.205911 GCGAGGGAGATAGACTTTTGC 58.794 52.381 0.00 0.00 0.00 3.68
900 916 5.723295 AGTCGTACGTGGTTATGGTTTAAT 58.277 37.500 16.05 0.00 0.00 1.40
1149 1167 3.036429 GCTCTGGACCGATGGCCTT 62.036 63.158 3.32 0.00 0.00 4.35
1306 1324 1.071314 AGGTGTGGTGGAAATCCCCA 61.071 55.000 5.78 5.78 35.09 4.96
1392 1410 0.323725 ATGATCACAAGTGGGTGCCC 60.324 55.000 0.00 0.00 38.66 5.36
1470 1488 2.289002 GGAGAATGAACATGTGCCGATC 59.711 50.000 0.00 0.00 0.00 3.69
1581 1599 0.107017 CAGGCCATCCTTCCGTTGAT 60.107 55.000 5.01 0.00 41.93 2.57
1647 1665 1.674221 GCACTGAGAGATGAAAGCCGT 60.674 52.381 0.00 0.00 0.00 5.68
1737 1755 6.313411 GCACATTTTCTGCCTGCAATTTTATA 59.687 34.615 0.00 0.00 29.57 0.98
1794 1812 7.775397 AGTGAATTCAGGTTCAACATTTTTG 57.225 32.000 8.80 0.00 39.61 2.44
1841 1859 9.421806 TGTTTATTATGCAAACTCTCCAAAATG 57.578 29.630 0.00 0.00 36.92 2.32
1842 1860 8.382875 GTTTATTATGCAAACTCTCCAAAATGC 58.617 33.333 0.00 0.00 33.91 3.56
1846 1864 3.888323 TGCAAACTCTCCAAAATGCACTA 59.112 39.130 0.00 0.00 38.73 2.74
1850 1868 6.680810 CAAACTCTCCAAAATGCACTAATGA 58.319 36.000 0.00 0.00 0.00 2.57
1851 1869 7.318141 CAAACTCTCCAAAATGCACTAATGAT 58.682 34.615 0.00 0.00 0.00 2.45
1859 1877 8.623903 TCCAAAATGCACTAATGATCAACTATC 58.376 33.333 0.00 0.00 34.93 2.08
1876 1894 7.563020 TCAACTATCAATTCTCAAGAGAGCAT 58.437 34.615 0.00 0.00 41.81 3.79
1883 1901 3.325293 TCTCAAGAGAGCATCCAACAC 57.675 47.619 0.00 0.00 41.81 3.32
1911 1929 3.189080 CACAATCTTTTGATCGCCTGTGA 59.811 43.478 0.00 0.00 42.27 3.58
2019 2038 5.878332 TGTTGTGGTGACATATCAATCAC 57.122 39.130 2.76 2.76 46.14 3.06
2061 2085 5.488341 GGTTCAGACCAGCTAGAACATAAA 58.512 41.667 13.50 0.00 45.77 1.40
2124 2149 0.247460 TGGTGCTACTGCTACAGCTG 59.753 55.000 13.48 13.48 44.21 4.24
2146 2171 6.261158 GCTGAGGAGAAAAGTAAAGAACACTT 59.739 38.462 0.00 0.00 37.85 3.16
2147 2172 7.553881 TGAGGAGAAAAGTAAAGAACACTTG 57.446 36.000 0.00 0.00 36.38 3.16
2154 2179 9.403583 AGAAAAGTAAAGAACACTTGGAATACA 57.596 29.630 0.00 0.00 36.38 2.29
2179 2204 5.105513 TCAGACGCCATTACAATCAAGACTA 60.106 40.000 0.00 0.00 0.00 2.59
2190 2215 4.707448 ACAATCAAGACTACATCGACTCCT 59.293 41.667 0.00 0.00 0.00 3.69
2204 2229 3.587951 TCGACTCCTATCTACTATGCCCT 59.412 47.826 0.00 0.00 0.00 5.19
2221 2246 2.497273 GCCCTACACCAATCTGCAAATT 59.503 45.455 0.00 0.00 0.00 1.82
2318 2345 6.531503 TTAGTGTTTGTTTTCATGGGTTCA 57.468 33.333 0.00 0.00 0.00 3.18
2345 2372 5.401531 TTTGGTAGGTGTCTACTCATGAC 57.598 43.478 0.00 0.00 43.97 3.06
2351 2378 6.097839 GGTAGGTGTCTACTCATGACCAATTA 59.902 42.308 0.00 0.00 43.97 1.40
2352 2379 6.814954 AGGTGTCTACTCATGACCAATTAT 57.185 37.500 0.00 0.00 33.83 1.28
2364 2391 7.112122 TCATGACCAATTATAGCAAGTGTTCT 58.888 34.615 0.00 0.00 0.00 3.01
2446 2476 3.025978 ACTGTGCATGAACAATATGGGG 58.974 45.455 8.18 0.00 0.00 4.96
2459 2489 6.274322 ACAATATGGGGAAGTAGGCAAATA 57.726 37.500 0.00 0.00 0.00 1.40
2576 2611 9.146984 TGTTTTCAGTATGTTTTATCTACCTCG 57.853 33.333 0.00 0.00 37.40 4.63
2590 2625 5.055642 TCTACCTCGTCACATGTTACAAG 57.944 43.478 10.62 1.15 0.00 3.16
2596 2631 6.100004 CCTCGTCACATGTTACAAGTAAGAT 58.900 40.000 10.62 0.00 30.30 2.40
2632 2667 8.975663 ATGATGATGATGTGTTCATTACTTCT 57.024 30.769 0.00 0.00 45.29 2.85
2643 2678 7.095229 TGTGTTCATTACTTCTATGTCTTGCAC 60.095 37.037 0.00 0.00 0.00 4.57
2710 2745 3.997021 CGTCTCTGTTTGCTATTCAGGTT 59.003 43.478 0.00 0.00 0.00 3.50
2794 2829 6.566079 AATCATGAAGAGGAAGACATACCA 57.434 37.500 0.00 0.00 0.00 3.25
2866 2901 3.020984 TGTGAAAGGTCCTTCAACCAAC 58.979 45.455 4.10 0.00 42.12 3.77
2924 2960 7.551035 TCAACTAAAGTTTTGTTTACCGCTA 57.449 32.000 11.94 0.00 35.83 4.26
2953 2989 6.621316 TTGAAGTTCGGTGCTTTAAATGTA 57.379 33.333 0.00 0.00 0.00 2.29
3080 3118 0.597637 CGCGATGGGATGACAGGTAC 60.598 60.000 0.00 0.00 0.00 3.34
3122 3160 6.826231 TCACTTCCATTTTTCTAACTGTGTCA 59.174 34.615 0.00 0.00 0.00 3.58
3150 3189 5.709164 GTGGGATTCATCCTCATCAATAAGG 59.291 44.000 5.80 0.00 46.35 2.69
3184 3223 3.391296 GGATGCAGAGACCAGGGTTAATA 59.609 47.826 0.00 0.00 0.00 0.98
3185 3224 4.503991 GGATGCAGAGACCAGGGTTAATAG 60.504 50.000 0.00 0.00 0.00 1.73
3188 3227 5.464069 TGCAGAGACCAGGGTTAATAGATA 58.536 41.667 0.00 0.00 0.00 1.98
3232 3271 6.003234 TCTTCCGTTGAATTTGCGATAAAA 57.997 33.333 0.00 0.00 0.00 1.52
3239 3278 7.009174 CCGTTGAATTTGCGATAAAATAGCTTT 59.991 33.333 0.00 0.00 0.00 3.51
3243 3282 9.075519 TGAATTTGCGATAAAATAGCTTTTGAG 57.924 29.630 0.00 0.00 36.09 3.02
3259 3298 5.526846 GCTTTTGAGATGAGACTCCAATAGG 59.473 44.000 0.00 0.00 36.22 2.57
3273 3312 8.383175 AGACTCCAATAGGTTGTTTTTCTCATA 58.617 33.333 0.00 0.00 35.89 2.15
3274 3313 8.567285 ACTCCAATAGGTTGTTTTTCTCATAG 57.433 34.615 0.00 0.00 35.89 2.23
3275 3314 8.383175 ACTCCAATAGGTTGTTTTTCTCATAGA 58.617 33.333 0.00 0.00 35.89 1.98
3316 3358 6.388435 AGTTTGATATGTACCGACCTACTC 57.612 41.667 0.00 0.00 0.00 2.59
3320 3362 1.964552 ATGTACCGACCTACTCTCCG 58.035 55.000 0.00 0.00 0.00 4.63
3333 3375 0.443869 CTCTCCGTTCCAAATGCGTG 59.556 55.000 0.00 0.00 0.00 5.34
3334 3376 1.154225 CTCCGTTCCAAATGCGTGC 60.154 57.895 0.00 0.00 0.00 5.34
3406 3452 3.920231 TCCCCTCATTCAGACATTCAG 57.080 47.619 0.00 0.00 0.00 3.02
3409 3455 4.782691 TCCCCTCATTCAGACATTCAGTAA 59.217 41.667 0.00 0.00 0.00 2.24
3435 3481 7.001674 TGTAATGAACTTCTGGTTAACATGGT 58.998 34.615 8.10 0.00 38.41 3.55
3440 3488 4.642429 ACTTCTGGTTAACATGGTCACTC 58.358 43.478 8.10 0.00 0.00 3.51
3461 3509 0.664166 GCTTTCAATGCCACACGGTG 60.664 55.000 6.58 6.58 33.28 4.94
3468 3516 2.050168 GCCACACGGTGCAACATG 60.050 61.111 8.30 0.00 39.98 3.21
3602 3650 7.936496 TTTGCATACCATAGAATTGTGAAGA 57.064 32.000 0.00 0.00 0.00 2.87
3607 3655 7.712639 GCATACCATAGAATTGTGAAGAGAAGA 59.287 37.037 0.00 0.00 0.00 2.87
3622 3670 7.762159 GTGAAGAGAAGACTTATACAAGAAGGG 59.238 40.741 0.00 0.00 35.60 3.95
3623 3671 6.800072 AGAGAAGACTTATACAAGAAGGGG 57.200 41.667 0.00 0.00 35.60 4.79
3652 3705 6.997239 AATTTAGGGAGTGATTTTCCGTAC 57.003 37.500 0.00 0.00 35.46 3.67
3713 3929 9.857656 AGAATATCATTTATTCAGGAGCAGAAA 57.142 29.630 7.79 0.00 36.63 2.52
3721 3937 3.914426 TCAGGAGCAGAAAGGGTAATC 57.086 47.619 0.00 0.00 0.00 1.75
3806 4143 8.701895 CCAAAATAATGGTACTCTAGAGGTGTA 58.298 37.037 23.50 5.51 35.65 2.90
3903 4247 3.536956 TGTGAATAGGTAAGAAGGCCG 57.463 47.619 0.00 0.00 0.00 6.13
3906 4250 4.163458 TGTGAATAGGTAAGAAGGCCGAAT 59.837 41.667 0.00 0.00 0.00 3.34
3907 4251 4.511826 GTGAATAGGTAAGAAGGCCGAATG 59.488 45.833 0.00 0.00 0.00 2.67
3947 4291 6.921857 CCCAGAACATTTATCTGAATTGATGC 59.078 38.462 5.16 0.00 45.74 3.91
3976 4320 9.084533 GTGCCCTTATATGGAATGGTTTTATTA 57.915 33.333 6.23 0.00 0.00 0.98
4067 4411 7.839680 TCTGAACCTAGTCAGCATCATATTA 57.160 36.000 5.65 0.00 44.01 0.98
4107 4464 6.958767 AGGTTAGCAACACAGGTAATTATCT 58.041 36.000 0.00 0.00 34.42 1.98
4110 4467 8.182227 GGTTAGCAACACAGGTAATTATCTTTC 58.818 37.037 0.00 0.00 34.42 2.62
4113 4470 8.723942 AGCAACACAGGTAATTATCTTTCTAG 57.276 34.615 0.00 0.00 0.00 2.43
4114 4471 8.322091 AGCAACACAGGTAATTATCTTTCTAGT 58.678 33.333 0.00 0.00 0.00 2.57
4177 4540 5.163509 GCTCATCAATGTAGTAGAGTGGTCA 60.164 44.000 0.00 0.00 0.00 4.02
4190 4553 0.739813 GTGGTCATCGTGCCTGTACC 60.740 60.000 0.00 0.00 0.00 3.34
4305 4668 9.791820 CATATTTAACATGATGAAGCTTTCACA 57.208 29.630 0.00 1.51 43.48 3.58
4333 4696 3.303593 CGTTCATGCATGCTATTCTCCAC 60.304 47.826 22.25 5.93 0.00 4.02
4358 4722 5.125356 TGCTGGTATTATGACTGGAATGTG 58.875 41.667 0.00 0.00 0.00 3.21
4369 4733 7.849804 ATGACTGGAATGTGTAAGAACATAC 57.150 36.000 0.00 0.00 39.89 2.39
4441 4807 3.957497 AGATCATACTTGAGCTTCTCCGT 59.043 43.478 0.00 0.00 46.16 4.69
4455 4821 4.585879 CTTCTCCGTCATTTAAGGGGAAA 58.414 43.478 0.00 0.00 44.47 3.13
4627 4993 6.449698 CATGGCATTTTCAACAAAGTAGAGT 58.550 36.000 0.00 0.00 0.00 3.24
4692 5059 2.290641 CCGTTCCTTTGTTCTTGAGGTG 59.709 50.000 0.00 0.00 32.33 4.00
4698 5065 5.511363 TCCTTTGTTCTTGAGGTGGTTTTA 58.489 37.500 0.00 0.00 32.33 1.52
4856 5223 0.530870 GCATACCGGGAGCTCAGAAC 60.531 60.000 17.19 1.40 0.00 3.01
4908 5275 1.681538 TCTCTTCTTCCTCGGGATCG 58.318 55.000 0.00 0.00 37.82 3.69
4977 5344 1.517242 CAGTGAGAAGGTGAAGGTGC 58.483 55.000 0.00 0.00 0.00 5.01
5112 5479 0.394565 GGGCGATGAAGGCTACATCT 59.605 55.000 0.00 0.00 41.06 2.90
5171 5542 0.974383 AGTGTAAGCTTAGGCCACGT 59.026 50.000 6.38 0.15 39.73 4.49
5173 5544 1.730612 GTGTAAGCTTAGGCCACGTTC 59.269 52.381 6.38 0.00 39.73 3.95
5215 5615 3.558321 CCGTGGGAAGTAAACTGATTCCA 60.558 47.826 5.63 0.00 43.58 3.53
5249 5649 0.032952 TGTGTCCTCAACAGGCGTAC 59.967 55.000 0.00 0.00 40.12 3.67
5256 5656 2.480419 CCTCAACAGGCGTACAGAAAAG 59.520 50.000 0.00 0.00 30.98 2.27
5257 5657 3.390135 CTCAACAGGCGTACAGAAAAGA 58.610 45.455 0.00 0.00 0.00 2.52
5259 5659 4.193090 TCAACAGGCGTACAGAAAAGAAA 58.807 39.130 0.00 0.00 0.00 2.52
5261 5661 5.298276 TCAACAGGCGTACAGAAAAGAAAAT 59.702 36.000 0.00 0.00 0.00 1.82
5262 5662 5.358298 ACAGGCGTACAGAAAAGAAAATC 57.642 39.130 0.00 0.00 0.00 2.17
5263 5663 4.819630 ACAGGCGTACAGAAAAGAAAATCA 59.180 37.500 0.00 0.00 0.00 2.57
5264 5664 5.473504 ACAGGCGTACAGAAAAGAAAATCAT 59.526 36.000 0.00 0.00 0.00 2.45
5265 5665 6.653320 ACAGGCGTACAGAAAAGAAAATCATA 59.347 34.615 0.00 0.00 0.00 2.15
5266 5666 7.336931 ACAGGCGTACAGAAAAGAAAATCATAT 59.663 33.333 0.00 0.00 0.00 1.78
5268 5668 9.046296 AGGCGTACAGAAAAGAAAATCATATAG 57.954 33.333 0.00 0.00 0.00 1.31
5269 5669 8.827677 GGCGTACAGAAAAGAAAATCATATAGT 58.172 33.333 0.00 0.00 0.00 2.12
5280 5680 9.760077 AAGAAAATCATATAGTACCTAACACGG 57.240 33.333 0.00 0.00 0.00 4.94
5281 5681 8.921205 AGAAAATCATATAGTACCTAACACGGT 58.079 33.333 0.00 0.00 41.10 4.83
5282 5682 8.882415 AAAATCATATAGTACCTAACACGGTG 57.118 34.615 6.58 6.58 37.93 4.94
5283 5683 7.592885 AATCATATAGTACCTAACACGGTGT 57.407 36.000 8.21 8.21 37.93 4.16
5284 5684 6.624352 TCATATAGTACCTAACACGGTGTC 57.376 41.667 15.09 0.54 37.93 3.67
5285 5685 6.359804 TCATATAGTACCTAACACGGTGTCT 58.640 40.000 15.09 8.56 37.93 3.41
5286 5686 7.508687 TCATATAGTACCTAACACGGTGTCTA 58.491 38.462 15.09 10.49 37.93 2.59
5287 5687 8.159447 TCATATAGTACCTAACACGGTGTCTAT 58.841 37.037 15.09 16.28 37.93 1.98
5288 5688 6.874288 ATAGTACCTAACACGGTGTCTATC 57.126 41.667 15.09 4.00 37.93 2.08
5289 5689 4.853007 AGTACCTAACACGGTGTCTATCT 58.147 43.478 15.09 0.60 37.93 1.98
5290 5690 5.259632 AGTACCTAACACGGTGTCTATCTT 58.740 41.667 15.09 0.00 37.93 2.40
5291 5691 4.451629 ACCTAACACGGTGTCTATCTTG 57.548 45.455 15.09 0.00 35.52 3.02
5326 5726 5.790593 TGTCACTGAGGAGTTGGTATAAAC 58.209 41.667 0.00 0.00 0.00 2.01
5366 5767 6.802608 TCAATACGATCCGAGTAACAGATTT 58.197 36.000 0.00 0.00 0.00 2.17
5392 5819 3.980646 TTATTTGTGTGTGTGACTGGC 57.019 42.857 0.00 0.00 0.00 4.85
5416 6382 5.065988 CGTTGCTAATGCCTAATGGTAACTT 59.934 40.000 0.00 0.00 38.71 2.66
5422 6388 8.076178 GCTAATGCCTAATGGTAACTTATTGTG 58.924 37.037 0.00 0.00 35.27 3.33
5426 6407 6.545666 TGCCTAATGGTAACTTATTGTGGATG 59.454 38.462 0.00 0.00 35.27 3.51
5432 6413 0.623723 ACTTATTGTGGATGGGCCGT 59.376 50.000 0.00 0.00 40.66 5.68
5441 6422 1.153229 GATGGGCCGTAACCTCCAC 60.153 63.158 0.00 0.00 31.48 4.02
5475 6456 2.430367 GACGGTTGGTTGCCTCCT 59.570 61.111 0.00 0.00 0.00 3.69
5510 6491 5.012148 AGTTTGTTATATATCCAGCGAGCCT 59.988 40.000 0.00 0.00 0.00 4.58
5515 6496 1.825281 ATATCCAGCGAGCCTCCAGC 61.825 60.000 0.00 0.00 44.25 4.85
5534 6515 3.715871 TGGAGCGACCATTGTCAAA 57.284 47.368 1.68 0.00 44.64 2.69
5564 6545 2.980233 GGTTGGAGCTTGCACGCT 60.980 61.111 18.76 18.76 44.33 5.07
5577 6558 3.681835 ACGCTCTGTCGGGGACAC 61.682 66.667 0.00 0.00 37.67 3.67
5602 6583 3.697439 TAAGGATGGTGGCTGCCGC 62.697 63.158 23.65 23.65 0.00 6.53
5679 6661 9.930693 AACTTTCTGTTTGTTTGTACCATAAAA 57.069 25.926 0.00 0.00 34.84 1.52
5690 6672 8.732531 TGTTTGTACCATAAAATACTAGCAACC 58.267 33.333 0.00 0.00 0.00 3.77
5700 6682 2.861147 ACTAGCAACCACTTTCCCTC 57.139 50.000 0.00 0.00 0.00 4.30
5731 6713 9.908152 AATAAATAAACACTAGCACCTTTGTTC 57.092 29.630 0.00 0.00 30.92 3.18
5732 6714 5.959618 ATAAACACTAGCACCTTTGTTCC 57.040 39.130 0.00 0.00 30.92 3.62
5733 6715 3.577805 AACACTAGCACCTTTGTTCCT 57.422 42.857 0.00 0.00 0.00 3.36
5734 6716 4.699925 AACACTAGCACCTTTGTTCCTA 57.300 40.909 0.00 0.00 0.00 2.94
5735 6717 4.699925 ACACTAGCACCTTTGTTCCTAA 57.300 40.909 0.00 0.00 0.00 2.69
5736 6718 5.043737 ACACTAGCACCTTTGTTCCTAAA 57.956 39.130 0.00 0.00 0.00 1.85
5742 6781 9.614792 ACTAGCACCTTTGTTCCTAAATATAAG 57.385 33.333 0.00 0.00 0.00 1.73
5789 6830 9.508567 CGAACTATGGATGTATATGTAGACATG 57.491 37.037 5.13 0.00 38.16 3.21
5891 6951 6.742718 CGACATAAGATTTGTGCACCTAAAAG 59.257 38.462 15.69 0.00 0.00 2.27
5916 6981 0.447801 CCTTGCTGAATGGTGCGTAC 59.552 55.000 0.00 0.00 0.00 3.67
5937 7002 6.370442 CGTACATTTGTGAATTCCAAGGAGTA 59.630 38.462 2.27 7.91 0.00 2.59
6005 7070 3.268595 GGTCCATTAGAAAAAGGAGGGGA 59.731 47.826 0.00 0.00 33.26 4.81
6051 7116 1.400846 GCAGACACTGATCATTGGCAG 59.599 52.381 20.01 13.55 38.10 4.85
6126 7204 1.792367 GTTTTCGCAATCAAAGGTGGC 59.208 47.619 0.00 0.00 0.00 5.01
6144 7222 3.798337 GTGGCAAGTTTCAACATGTGAAG 59.202 43.478 0.00 0.00 46.85 3.02
6167 7245 1.516821 CAAATGATTGGCCACGGCG 60.517 57.895 3.88 4.80 43.06 6.46
6194 7272 1.308069 CCAGCTCATTCCCCACAACG 61.308 60.000 0.00 0.00 0.00 4.10
6215 7293 2.338500 GAGTAAGTGTACTGCAGGTGC 58.662 52.381 19.93 8.05 40.82 5.01
6238 7316 1.295746 GGGTTCTCCCGTGGAAGAC 59.704 63.158 0.00 0.00 44.74 3.01
6284 7365 1.339929 CACCTTTGGCCACAGGTAAAC 59.660 52.381 37.19 0.00 41.86 2.01
6319 7400 6.429692 CACAAGGTACACCAACAGATTTATGA 59.570 38.462 0.38 0.00 38.89 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.742201 AGCTGCTACCGCACGTGG 62.742 66.667 18.88 3.64 42.25 4.94
20 21 2.738521 AAGCTGCTACCGCACGTG 60.739 61.111 12.28 12.28 42.25 4.49
21 22 2.738521 CAAGCTGCTACCGCACGT 60.739 61.111 0.90 0.00 42.25 4.49
22 23 4.152625 GCAAGCTGCTACCGCACG 62.153 66.667 0.90 0.00 42.25 5.34
23 24 3.804193 GGCAAGCTGCTACCGCAC 61.804 66.667 17.02 6.29 44.28 5.34
47 48 2.272146 CCATCCGACCAACCCCTG 59.728 66.667 0.00 0.00 0.00 4.45
48 49 2.480255 TACCCATCCGACCAACCCCT 62.480 60.000 0.00 0.00 0.00 4.79
49 50 1.979619 CTACCCATCCGACCAACCCC 61.980 65.000 0.00 0.00 0.00 4.95
50 51 1.525442 CTACCCATCCGACCAACCC 59.475 63.158 0.00 0.00 0.00 4.11
51 52 1.153229 GCTACCCATCCGACCAACC 60.153 63.158 0.00 0.00 0.00 3.77
52 53 0.462047 CTGCTACCCATCCGACCAAC 60.462 60.000 0.00 0.00 0.00 3.77
53 54 1.904771 CTGCTACCCATCCGACCAA 59.095 57.895 0.00 0.00 0.00 3.67
54 55 2.731571 GCTGCTACCCATCCGACCA 61.732 63.158 0.00 0.00 0.00 4.02
55 56 2.109181 GCTGCTACCCATCCGACC 59.891 66.667 0.00 0.00 0.00 4.79
56 57 2.279517 CGCTGCTACCCATCCGAC 60.280 66.667 0.00 0.00 0.00 4.79
57 58 3.536917 CCGCTGCTACCCATCCGA 61.537 66.667 0.00 0.00 0.00 4.55
58 59 4.609018 CCCGCTGCTACCCATCCG 62.609 72.222 0.00 0.00 0.00 4.18
59 60 4.256180 CCCCGCTGCTACCCATCC 62.256 72.222 0.00 0.00 0.00 3.51
60 61 2.265467 TTTCCCCGCTGCTACCCATC 62.265 60.000 0.00 0.00 0.00 3.51
61 62 2.270874 CTTTCCCCGCTGCTACCCAT 62.271 60.000 0.00 0.00 0.00 4.00
62 63 2.931105 TTTCCCCGCTGCTACCCA 60.931 61.111 0.00 0.00 0.00 4.51
63 64 2.124695 CTTTCCCCGCTGCTACCC 60.125 66.667 0.00 0.00 0.00 3.69
64 65 1.153349 CTCTTTCCCCGCTGCTACC 60.153 63.158 0.00 0.00 0.00 3.18
65 66 0.249398 TTCTCTTTCCCCGCTGCTAC 59.751 55.000 0.00 0.00 0.00 3.58
66 67 0.981183 TTTCTCTTTCCCCGCTGCTA 59.019 50.000 0.00 0.00 0.00 3.49
67 68 0.322008 CTTTCTCTTTCCCCGCTGCT 60.322 55.000 0.00 0.00 0.00 4.24
68 69 0.606673 ACTTTCTCTTTCCCCGCTGC 60.607 55.000 0.00 0.00 0.00 5.25
69 70 1.270839 TGACTTTCTCTTTCCCCGCTG 60.271 52.381 0.00 0.00 0.00 5.18
70 71 1.056660 TGACTTTCTCTTTCCCCGCT 58.943 50.000 0.00 0.00 0.00 5.52
71 72 1.535896 GTTGACTTTCTCTTTCCCCGC 59.464 52.381 0.00 0.00 0.00 6.13
72 73 1.798813 CGTTGACTTTCTCTTTCCCCG 59.201 52.381 0.00 0.00 0.00 5.73
73 74 2.847441 ACGTTGACTTTCTCTTTCCCC 58.153 47.619 0.00 0.00 0.00 4.81
74 75 4.879598 TCTACGTTGACTTTCTCTTTCCC 58.120 43.478 0.00 0.00 0.00 3.97
75 76 6.700520 TCTTTCTACGTTGACTTTCTCTTTCC 59.299 38.462 0.00 0.00 0.00 3.13
76 77 7.695869 TCTTTCTACGTTGACTTTCTCTTTC 57.304 36.000 0.00 0.00 0.00 2.62
77 78 7.254488 GCTTCTTTCTACGTTGACTTTCTCTTT 60.254 37.037 0.00 0.00 0.00 2.52
78 79 6.201234 GCTTCTTTCTACGTTGACTTTCTCTT 59.799 38.462 0.00 0.00 0.00 2.85
79 80 5.692654 GCTTCTTTCTACGTTGACTTTCTCT 59.307 40.000 0.00 0.00 0.00 3.10
80 81 5.462398 TGCTTCTTTCTACGTTGACTTTCTC 59.538 40.000 0.00 0.00 0.00 2.87
81 82 5.357257 TGCTTCTTTCTACGTTGACTTTCT 58.643 37.500 0.00 0.00 0.00 2.52
82 83 5.652744 TGCTTCTTTCTACGTTGACTTTC 57.347 39.130 0.00 0.00 0.00 2.62
83 84 6.431198 TTTGCTTCTTTCTACGTTGACTTT 57.569 33.333 0.00 0.00 0.00 2.66
84 85 5.007724 CCTTTGCTTCTTTCTACGTTGACTT 59.992 40.000 0.00 0.00 0.00 3.01
85 86 4.511826 CCTTTGCTTCTTTCTACGTTGACT 59.488 41.667 0.00 0.00 0.00 3.41
86 87 4.319549 CCCTTTGCTTCTTTCTACGTTGAC 60.320 45.833 0.00 0.00 0.00 3.18
87 88 3.813166 CCCTTTGCTTCTTTCTACGTTGA 59.187 43.478 0.00 0.00 0.00 3.18
88 89 3.813166 TCCCTTTGCTTCTTTCTACGTTG 59.187 43.478 0.00 0.00 0.00 4.10
89 90 4.081322 TCCCTTTGCTTCTTTCTACGTT 57.919 40.909 0.00 0.00 0.00 3.99
90 91 3.764237 TCCCTTTGCTTCTTTCTACGT 57.236 42.857 0.00 0.00 0.00 3.57
91 92 6.106673 TCTTATCCCTTTGCTTCTTTCTACG 58.893 40.000 0.00 0.00 0.00 3.51
92 93 7.012799 CCATCTTATCCCTTTGCTTCTTTCTAC 59.987 40.741 0.00 0.00 0.00 2.59
93 94 7.056635 CCATCTTATCCCTTTGCTTCTTTCTA 58.943 38.462 0.00 0.00 0.00 2.10
94 95 5.890419 CCATCTTATCCCTTTGCTTCTTTCT 59.110 40.000 0.00 0.00 0.00 2.52
95 96 5.068329 CCCATCTTATCCCTTTGCTTCTTTC 59.932 44.000 0.00 0.00 0.00 2.62
96 97 4.958581 CCCATCTTATCCCTTTGCTTCTTT 59.041 41.667 0.00 0.00 0.00 2.52
97 98 4.017130 ACCCATCTTATCCCTTTGCTTCTT 60.017 41.667 0.00 0.00 0.00 2.52
98 99 3.529319 ACCCATCTTATCCCTTTGCTTCT 59.471 43.478 0.00 0.00 0.00 2.85
99 100 3.903467 ACCCATCTTATCCCTTTGCTTC 58.097 45.455 0.00 0.00 0.00 3.86
100 101 4.686122 CGTACCCATCTTATCCCTTTGCTT 60.686 45.833 0.00 0.00 0.00 3.91
101 102 3.181454 CGTACCCATCTTATCCCTTTGCT 60.181 47.826 0.00 0.00 0.00 3.91
102 103 3.139077 CGTACCCATCTTATCCCTTTGC 58.861 50.000 0.00 0.00 0.00 3.68
103 104 3.139077 GCGTACCCATCTTATCCCTTTG 58.861 50.000 0.00 0.00 0.00 2.77
104 105 2.775384 TGCGTACCCATCTTATCCCTTT 59.225 45.455 0.00 0.00 0.00 3.11
105 106 2.404559 TGCGTACCCATCTTATCCCTT 58.595 47.619 0.00 0.00 0.00 3.95
106 107 2.097110 TGCGTACCCATCTTATCCCT 57.903 50.000 0.00 0.00 0.00 4.20
107 108 2.104281 AGTTGCGTACCCATCTTATCCC 59.896 50.000 0.00 0.00 0.00 3.85
108 109 3.470645 AGTTGCGTACCCATCTTATCC 57.529 47.619 0.00 0.00 0.00 2.59
109 110 4.508124 CAGAAGTTGCGTACCCATCTTATC 59.492 45.833 4.25 0.00 0.00 1.75
110 111 4.442706 CAGAAGTTGCGTACCCATCTTAT 58.557 43.478 4.25 0.00 0.00 1.73
111 112 3.369052 CCAGAAGTTGCGTACCCATCTTA 60.369 47.826 4.25 0.00 0.00 2.10
112 113 2.615493 CCAGAAGTTGCGTACCCATCTT 60.615 50.000 3.96 3.96 0.00 2.40
113 114 1.066143 CCAGAAGTTGCGTACCCATCT 60.066 52.381 0.00 0.00 0.00 2.90
114 115 1.369625 CCAGAAGTTGCGTACCCATC 58.630 55.000 0.00 0.00 0.00 3.51
115 116 0.676782 GCCAGAAGTTGCGTACCCAT 60.677 55.000 0.00 0.00 0.00 4.00
116 117 1.302192 GCCAGAAGTTGCGTACCCA 60.302 57.895 0.00 0.00 0.00 4.51
117 118 2.038837 GGCCAGAAGTTGCGTACCC 61.039 63.158 0.00 0.00 0.00 3.69
118 119 1.302192 TGGCCAGAAGTTGCGTACC 60.302 57.895 0.00 0.00 0.00 3.34
119 120 1.866925 GTGGCCAGAAGTTGCGTAC 59.133 57.895 5.11 0.00 0.00 3.67
120 121 1.666553 CGTGGCCAGAAGTTGCGTA 60.667 57.895 5.11 0.00 0.00 4.42
121 122 2.972505 CGTGGCCAGAAGTTGCGT 60.973 61.111 5.11 0.00 0.00 5.24
122 123 2.972505 ACGTGGCCAGAAGTTGCG 60.973 61.111 5.11 6.95 0.00 4.85
123 124 1.237285 ATCACGTGGCCAGAAGTTGC 61.237 55.000 17.00 0.00 0.00 4.17
124 125 0.518636 CATCACGTGGCCAGAAGTTG 59.481 55.000 17.00 0.00 0.00 3.16
125 126 1.237285 GCATCACGTGGCCAGAAGTT 61.237 55.000 17.00 0.00 0.00 2.66
126 127 1.672356 GCATCACGTGGCCAGAAGT 60.672 57.895 17.00 3.68 0.00 3.01
127 128 1.642037 CTGCATCACGTGGCCAGAAG 61.642 60.000 17.00 2.88 0.00 2.85
128 129 1.672030 CTGCATCACGTGGCCAGAA 60.672 57.895 17.00 0.00 0.00 3.02
129 130 2.046988 CTGCATCACGTGGCCAGA 60.047 61.111 17.00 0.00 0.00 3.86
130 131 3.807538 GCTGCATCACGTGGCCAG 61.808 66.667 17.00 18.69 0.00 4.85
134 135 2.108514 AATCGGCTGCATCACGTGG 61.109 57.895 17.00 0.92 0.00 4.94
135 136 1.061411 CAATCGGCTGCATCACGTG 59.939 57.895 9.94 9.94 0.00 4.49
136 137 0.673333 TTCAATCGGCTGCATCACGT 60.673 50.000 0.50 0.00 0.00 4.49
137 138 0.247814 GTTCAATCGGCTGCATCACG 60.248 55.000 0.50 0.00 0.00 4.35
138 139 0.247814 CGTTCAATCGGCTGCATCAC 60.248 55.000 0.50 0.00 0.00 3.06
139 140 0.673333 ACGTTCAATCGGCTGCATCA 60.673 50.000 0.50 0.00 34.94 3.07
140 141 0.026803 GACGTTCAATCGGCTGCATC 59.973 55.000 0.50 0.00 35.78 3.91
141 142 1.369091 GGACGTTCAATCGGCTGCAT 61.369 55.000 0.50 0.00 39.03 3.96
142 143 2.032634 GGACGTTCAATCGGCTGCA 61.033 57.895 0.50 0.00 39.03 4.41
143 144 2.750888 GGGACGTTCAATCGGCTGC 61.751 63.158 0.00 0.00 39.03 5.25
144 145 3.486263 GGGACGTTCAATCGGCTG 58.514 61.111 0.00 0.00 39.03 4.85
166 167 3.785499 GAACTTTCGGCCGGACGC 61.785 66.667 29.18 5.73 0.00 5.19
167 168 3.475774 CGAACTTTCGGCCGGACG 61.476 66.667 27.95 27.95 46.30 4.79
188 189 3.729698 GTTTACACCCGGTGCGCC 61.730 66.667 17.99 6.11 36.98 6.53
189 190 1.858372 AATGTTTACACCCGGTGCGC 61.858 55.000 17.99 0.00 36.98 6.09
190 191 0.594110 AAATGTTTACACCCGGTGCG 59.406 50.000 17.99 0.00 36.98 5.34
191 192 2.095110 GGTAAATGTTTACACCCGGTGC 60.095 50.000 17.99 1.65 43.64 5.01
192 193 3.147629 TGGTAAATGTTTACACCCGGTG 58.852 45.455 16.47 16.47 43.64 4.94
193 194 3.505480 TGGTAAATGTTTACACCCGGT 57.495 42.857 15.29 0.00 43.64 5.28
194 195 4.850347 TTTGGTAAATGTTTACACCCGG 57.150 40.909 15.29 0.00 43.64 5.73
195 196 6.074544 TCTTTTGGTAAATGTTTACACCCG 57.925 37.500 15.29 2.90 43.64 5.28
196 197 8.719560 TTTTCTTTTGGTAAATGTTTACACCC 57.280 30.769 15.29 2.02 43.64 4.61
197 198 9.976255 GTTTTTCTTTTGGTAAATGTTTACACC 57.024 29.630 15.29 4.68 43.64 4.16
200 201 9.697250 GCTGTTTTTCTTTTGGTAAATGTTTAC 57.303 29.630 7.03 7.03 41.68 2.01
201 202 9.436957 TGCTGTTTTTCTTTTGGTAAATGTTTA 57.563 25.926 0.00 0.00 0.00 2.01
202 203 8.329203 TGCTGTTTTTCTTTTGGTAAATGTTT 57.671 26.923 0.00 0.00 0.00 2.83
203 204 7.606073 ACTGCTGTTTTTCTTTTGGTAAATGTT 59.394 29.630 0.00 0.00 0.00 2.71
204 205 7.102993 ACTGCTGTTTTTCTTTTGGTAAATGT 58.897 30.769 0.00 0.00 0.00 2.71
205 206 7.538303 ACTGCTGTTTTTCTTTTGGTAAATG 57.462 32.000 0.00 0.00 0.00 2.32
206 207 9.830975 ATTACTGCTGTTTTTCTTTTGGTAAAT 57.169 25.926 0.09 0.00 0.00 1.40
208 209 9.959749 CTATTACTGCTGTTTTTCTTTTGGTAA 57.040 29.630 0.09 0.00 0.00 2.85
209 210 9.127277 ACTATTACTGCTGTTTTTCTTTTGGTA 57.873 29.630 0.09 0.00 0.00 3.25
210 211 7.920682 CACTATTACTGCTGTTTTTCTTTTGGT 59.079 33.333 0.09 0.00 0.00 3.67
211 212 7.096065 GCACTATTACTGCTGTTTTTCTTTTGG 60.096 37.037 0.09 0.00 0.00 3.28
212 213 7.649306 AGCACTATTACTGCTGTTTTTCTTTTG 59.351 33.333 0.09 0.00 43.54 2.44
213 214 7.716612 AGCACTATTACTGCTGTTTTTCTTTT 58.283 30.769 0.09 0.00 43.54 2.27
214 215 7.277174 AGCACTATTACTGCTGTTTTTCTTT 57.723 32.000 0.09 0.00 43.54 2.52
215 216 6.884280 AGCACTATTACTGCTGTTTTTCTT 57.116 33.333 0.09 0.00 43.54 2.52
216 217 7.162082 AGTAGCACTATTACTGCTGTTTTTCT 58.838 34.615 0.09 0.00 44.85 2.52
217 218 7.365840 AGTAGCACTATTACTGCTGTTTTTC 57.634 36.000 0.09 0.00 44.85 2.29
218 219 8.095169 AGTAGTAGCACTATTACTGCTGTTTTT 58.905 33.333 10.92 0.00 44.85 1.94
219 220 7.612677 AGTAGTAGCACTATTACTGCTGTTTT 58.387 34.615 10.92 0.00 44.85 2.43
220 221 7.171630 AGTAGTAGCACTATTACTGCTGTTT 57.828 36.000 10.92 0.00 44.85 2.83
221 222 6.777213 AGTAGTAGCACTATTACTGCTGTT 57.223 37.500 10.92 0.00 44.85 3.16
222 223 7.055378 ACTAGTAGTAGCACTATTACTGCTGT 58.945 38.462 18.12 12.69 44.85 4.40
239 240 6.148480 CCTTTGACACGTACAGTACTAGTAGT 59.852 42.308 8.14 8.14 0.00 2.73
240 241 6.148480 ACCTTTGACACGTACAGTACTAGTAG 59.852 42.308 1.87 0.00 0.00 2.57
246 247 3.005155 AGGACCTTTGACACGTACAGTAC 59.995 47.826 0.00 0.00 0.00 2.73
247 248 3.005050 CAGGACCTTTGACACGTACAGTA 59.995 47.826 0.00 0.00 0.00 2.74
248 249 2.037144 AGGACCTTTGACACGTACAGT 58.963 47.619 0.00 0.00 0.00 3.55
249 250 2.035449 TCAGGACCTTTGACACGTACAG 59.965 50.000 0.00 0.00 0.00 2.74
251 252 2.806608 TCAGGACCTTTGACACGTAC 57.193 50.000 0.00 0.00 0.00 3.67
252 253 2.232941 GGATCAGGACCTTTGACACGTA 59.767 50.000 0.00 0.00 0.00 3.57
254 255 1.276421 AGGATCAGGACCTTTGACACG 59.724 52.381 0.00 0.00 33.55 4.49
255 256 2.616510 CCAGGATCAGGACCTTTGACAC 60.617 54.545 0.00 0.00 35.35 3.67
256 257 1.630369 CCAGGATCAGGACCTTTGACA 59.370 52.381 0.00 0.00 35.35 3.58
257 258 1.630878 ACCAGGATCAGGACCTTTGAC 59.369 52.381 10.14 0.00 35.35 3.18
258 259 2.044793 ACCAGGATCAGGACCTTTGA 57.955 50.000 10.14 0.00 35.35 2.69
259 260 3.107601 TCTACCAGGATCAGGACCTTTG 58.892 50.000 10.14 0.00 35.35 2.77
260 261 3.491766 TCTACCAGGATCAGGACCTTT 57.508 47.619 10.14 0.00 35.35 3.11
261 262 3.491766 TTCTACCAGGATCAGGACCTT 57.508 47.619 10.14 0.00 35.35 3.50
262 263 3.491766 TTTCTACCAGGATCAGGACCT 57.508 47.619 10.14 0.00 38.40 3.85
263 264 3.118223 CCTTTTCTACCAGGATCAGGACC 60.118 52.174 10.14 0.00 30.81 4.46
264 265 3.775316 TCCTTTTCTACCAGGATCAGGAC 59.225 47.826 10.14 0.00 33.99 3.85
430 433 4.932268 ACGGAAATAATTTCGAAAGCGA 57.068 36.364 16.80 4.28 46.33 4.93
431 434 4.494410 GGAACGGAAATAATTTCGAAAGCG 59.506 41.667 16.80 3.18 40.57 4.68
449 452 2.893398 CGGAAGGGAGGAGGAACG 59.107 66.667 0.00 0.00 0.00 3.95
501 504 0.166814 CTAAGCTTGCGCGCTTCTTT 59.833 50.000 33.29 21.88 46.68 2.52
664 672 5.566627 CGATGGGTTTAGGTGAAGCAAAAAT 60.567 40.000 0.00 0.00 0.00 1.82
679 687 2.759560 GGGGCATGCGATGGGTTT 60.760 61.111 12.44 0.00 0.00 3.27
789 797 5.050837 GGATCAAATCAAACACACAGCAAAC 60.051 40.000 0.00 0.00 0.00 2.93
876 889 2.927553 ACCATAACCACGTACGACTC 57.072 50.000 24.41 0.00 0.00 3.36
881 894 8.667076 AATAGGATTAAACCATAACCACGTAC 57.333 34.615 4.40 0.00 0.00 3.67
929 945 8.692710 ACTGATTTCTCGGATGTTACAAGTATA 58.307 33.333 0.00 0.00 0.00 1.47
930 946 7.556844 ACTGATTTCTCGGATGTTACAAGTAT 58.443 34.615 0.00 0.00 0.00 2.12
931 947 6.931838 ACTGATTTCTCGGATGTTACAAGTA 58.068 36.000 0.00 0.00 0.00 2.24
932 948 5.794894 ACTGATTTCTCGGATGTTACAAGT 58.205 37.500 0.00 0.00 0.00 3.16
933 949 7.096436 CGATACTGATTTCTCGGATGTTACAAG 60.096 40.741 0.00 0.00 0.00 3.16
935 951 6.206498 CGATACTGATTTCTCGGATGTTACA 58.794 40.000 0.00 0.00 0.00 2.41
936 952 6.677027 CGATACTGATTTCTCGGATGTTAC 57.323 41.667 0.00 0.00 0.00 2.50
1392 1410 3.028850 AGCAATCCTTGACCATCCAATG 58.971 45.455 0.00 0.00 0.00 2.82
1470 1488 0.529337 AATCATCCTCGCTGTCGCTG 60.529 55.000 0.00 0.00 35.26 5.18
1581 1599 0.322456 GAGCACTACCCAACCATGCA 60.322 55.000 0.00 0.00 38.79 3.96
1647 1665 1.687563 TCATCCGGTCGCTTATCAGA 58.312 50.000 0.00 0.00 0.00 3.27
1766 1784 7.440523 AATGTTGAACCTGAATTCACTAGTC 57.559 36.000 3.38 0.78 38.31 2.59
1767 1785 7.823745 AAATGTTGAACCTGAATTCACTAGT 57.176 32.000 3.38 0.00 38.31 2.57
1768 1786 8.971321 CAAAAATGTTGAACCTGAATTCACTAG 58.029 33.333 3.38 0.00 38.31 2.57
1769 1787 8.690884 TCAAAAATGTTGAACCTGAATTCACTA 58.309 29.630 3.38 0.00 38.31 2.74
1770 1788 7.555087 TCAAAAATGTTGAACCTGAATTCACT 58.445 30.769 3.38 0.00 38.31 3.41
1771 1789 7.769272 TCAAAAATGTTGAACCTGAATTCAC 57.231 32.000 3.38 0.00 38.31 3.18
1810 1828 8.726988 TGGAGAGTTTGCATAATAAACAGTAAC 58.273 33.333 1.37 0.00 39.78 2.50
1814 1832 9.643693 ATTTTGGAGAGTTTGCATAATAAACAG 57.356 29.630 1.37 0.00 39.78 3.16
1820 1838 5.870978 GTGCATTTTGGAGAGTTTGCATAAT 59.129 36.000 0.00 0.00 41.55 1.28
1826 1844 6.680810 TCATTAGTGCATTTTGGAGAGTTTG 58.319 36.000 0.00 0.00 0.00 2.93
1829 1847 6.182627 TGATCATTAGTGCATTTTGGAGAGT 58.817 36.000 0.00 0.00 0.00 3.24
1832 1850 6.860080 AGTTGATCATTAGTGCATTTTGGAG 58.140 36.000 0.00 0.00 0.00 3.86
1841 1859 9.049523 TGAGAATTGATAGTTGATCATTAGTGC 57.950 33.333 0.00 0.00 44.23 4.40
1850 1868 7.563020 TGCTCTCTTGAGAATTGATAGTTGAT 58.437 34.615 1.81 0.00 42.73 2.57
1851 1869 6.939622 TGCTCTCTTGAGAATTGATAGTTGA 58.060 36.000 1.81 0.00 42.73 3.18
1859 1877 4.698780 TGTTGGATGCTCTCTTGAGAATTG 59.301 41.667 1.81 0.00 38.66 2.32
1860 1878 4.699257 GTGTTGGATGCTCTCTTGAGAATT 59.301 41.667 1.81 0.00 38.66 2.17
1876 1894 3.469008 AGATTGTGAAGACGTGTTGGA 57.531 42.857 1.19 0.00 0.00 3.53
1883 1901 4.084507 GCGATCAAAAGATTGTGAAGACG 58.915 43.478 0.00 0.00 37.79 4.18
1911 1929 9.321562 GCAATCAGATAATTTTCACATGGAAAT 57.678 29.630 9.31 4.73 44.59 2.17
1976 1995 6.374417 ACATTCAAGGAGAAAAGGTAGCTA 57.626 37.500 0.00 0.00 40.22 3.32
1980 1999 5.534654 CCACAACATTCAAGGAGAAAAGGTA 59.465 40.000 0.00 0.00 40.22 3.08
2019 2038 3.585990 CCCAATTAGGCCAGCGCG 61.586 66.667 5.01 0.00 35.39 6.86
2082 2107 7.044181 CCAGTGAAAGCTCTTGAACTATGATA 58.956 38.462 0.00 0.00 0.00 2.15
2124 2149 6.766467 TCCAAGTGTTCTTTACTTTTCTCCTC 59.234 38.462 0.00 0.00 36.29 3.71
2146 2171 3.558931 AATGGCGTCTGATGTATTCCA 57.441 42.857 0.00 0.00 0.00 3.53
2147 2172 4.377021 TGTAATGGCGTCTGATGTATTCC 58.623 43.478 0.00 0.00 0.00 3.01
2154 2179 4.572389 GTCTTGATTGTAATGGCGTCTGAT 59.428 41.667 0.00 0.00 0.00 2.90
2156 2181 3.935203 AGTCTTGATTGTAATGGCGTCTG 59.065 43.478 0.00 0.00 0.00 3.51
2179 2204 4.944930 GGCATAGTAGATAGGAGTCGATGT 59.055 45.833 0.00 0.00 0.00 3.06
2190 2215 6.437477 CAGATTGGTGTAGGGCATAGTAGATA 59.563 42.308 0.00 0.00 0.00 1.98
2204 2229 2.556189 ACGCAATTTGCAGATTGGTGTA 59.444 40.909 26.09 0.00 45.36 2.90
2221 2246 3.729966 TGTTAAACATAGACCACACGCA 58.270 40.909 0.00 0.00 0.00 5.24
2265 2292 4.363138 TGACTTCGAGCTACTATTGCATG 58.637 43.478 0.00 0.00 0.00 4.06
2318 2345 6.182507 TGAGTAGACACCTACCAAAAATGT 57.817 37.500 0.00 0.00 44.92 2.71
2345 2372 9.507280 CAAACATAGAACACTTGCTATAATTGG 57.493 33.333 0.00 0.00 0.00 3.16
2402 2429 7.223582 CAGTTATCAGAAGAGATGCGTACAATT 59.776 37.037 0.00 0.00 0.00 2.32
2446 2476 8.609176 TCGACAACATTTATATTTGCCTACTTC 58.391 33.333 0.00 0.00 0.00 3.01
2459 2489 7.159372 AGGTAGAACAGTTCGACAACATTTAT 58.841 34.615 23.25 0.00 37.07 1.40
2643 2678 4.820173 ACCAGATCATATCAACACAGCATG 59.180 41.667 0.00 0.00 46.00 4.06
2683 2718 4.923871 TGAATAGCAAACAGAGACGACTTC 59.076 41.667 0.00 0.00 0.00 3.01
2686 2721 3.614616 CCTGAATAGCAAACAGAGACGAC 59.385 47.826 0.00 0.00 34.07 4.34
2687 2722 3.258372 ACCTGAATAGCAAACAGAGACGA 59.742 43.478 0.00 0.00 34.07 4.20
2688 2723 3.589988 ACCTGAATAGCAAACAGAGACG 58.410 45.455 0.00 0.00 34.07 4.18
2710 2745 1.902508 CCTCCTGCAACTCTAACTGGA 59.097 52.381 0.00 0.00 0.00 3.86
2794 2829 4.442706 CCTGCCACGATCTAAGTACAATT 58.557 43.478 0.00 0.00 0.00 2.32
2866 2901 7.170998 ACTTCAGTCACTCCTAAAACATTTACG 59.829 37.037 0.00 0.00 0.00 3.18
2930 2966 5.508200 ACATTTAAAGCACCGAACTTCAA 57.492 34.783 0.00 0.00 0.00 2.69
3203 3242 6.616947 TCGCAAATTCAACGGAAGATTATTT 58.383 32.000 0.00 0.00 36.25 1.40
3206 3245 5.811399 ATCGCAAATTCAACGGAAGATTA 57.189 34.783 0.00 0.00 36.25 1.75
3211 3250 6.470877 GCTATTTTATCGCAAATTCAACGGAA 59.529 34.615 0.00 0.00 37.45 4.30
3225 3264 9.039870 AGTCTCATCTCAAAAGCTATTTTATCG 57.960 33.333 0.00 0.00 36.47 2.92
3232 3271 5.946942 TGGAGTCTCATCTCAAAAGCTAT 57.053 39.130 1.47 0.00 36.30 2.97
3239 3278 5.485353 ACAACCTATTGGAGTCTCATCTCAA 59.515 40.000 0.00 0.00 40.42 3.02
3243 3282 7.391833 AGAAAAACAACCTATTGGAGTCTCATC 59.608 37.037 0.00 0.00 40.42 2.92
3288 3327 6.938507 AGGTCGGTACATATCAAACTTACAA 58.061 36.000 0.00 0.00 0.00 2.41
3292 3331 6.606395 AGAGTAGGTCGGTACATATCAAACTT 59.394 38.462 0.00 0.00 0.00 2.66
3295 3334 5.533903 GGAGAGTAGGTCGGTACATATCAAA 59.466 44.000 0.00 0.00 0.00 2.69
3297 3336 4.649692 GGAGAGTAGGTCGGTACATATCA 58.350 47.826 0.00 0.00 0.00 2.15
3316 3358 1.154225 GCACGCATTTGGAACGGAG 60.154 57.895 0.00 0.00 0.00 4.63
3320 3362 1.067635 AGAATGGCACGCATTTGGAAC 60.068 47.619 0.00 0.00 0.00 3.62
3333 3375 7.251281 GTTGAAGTACAAAATCCTAGAATGGC 58.749 38.462 0.00 0.00 40.36 4.40
3334 3376 7.393234 TGGTTGAAGTACAAAATCCTAGAATGG 59.607 37.037 0.00 0.00 40.36 3.16
3409 3455 7.669722 ACCATGTTAACCAGAAGTTCATTACAT 59.330 33.333 5.50 3.51 40.05 2.29
3419 3465 4.692625 CAGAGTGACCATGTTAACCAGAAG 59.307 45.833 2.48 0.00 0.00 2.85
3435 3481 1.881973 GTGGCATTGAAAGCAGAGTGA 59.118 47.619 0.00 0.00 0.00 3.41
3440 3488 0.387622 CCGTGTGGCATTGAAAGCAG 60.388 55.000 0.00 0.00 0.00 4.24
3461 3509 3.940209 TCAATCCAAAGGACATGTTGC 57.060 42.857 0.00 0.00 32.98 4.17
3468 3516 7.772757 ACATCTTCTCTATTCAATCCAAAGGAC 59.227 37.037 0.00 0.00 32.98 3.85
3602 3650 7.569599 TTTCCCCTTCTTGTATAAGTCTTCT 57.430 36.000 0.00 0.00 35.38 2.85
3632 3685 4.529377 ACTGTACGGAAAATCACTCCCTAA 59.471 41.667 9.17 0.00 0.00 2.69
3639 3692 2.147958 TGCCACTGTACGGAAAATCAC 58.852 47.619 9.17 0.00 0.00 3.06
3642 3695 2.790433 ACATGCCACTGTACGGAAAAT 58.210 42.857 9.17 0.00 0.00 1.82
3647 3700 3.807622 CCTAAATACATGCCACTGTACGG 59.192 47.826 0.00 0.00 34.59 4.02
3652 3705 6.112734 TGTAGTTCCTAAATACATGCCACTG 58.887 40.000 0.00 0.00 0.00 3.66
3707 3923 7.865706 TGAATAAGAAGATTACCCTTTCTGC 57.134 36.000 0.00 0.00 0.00 4.26
3712 3928 8.001292 CCCAAGATGAATAAGAAGATTACCCTT 58.999 37.037 0.00 0.00 0.00 3.95
3713 3929 7.129504 ACCCAAGATGAATAAGAAGATTACCCT 59.870 37.037 0.00 0.00 0.00 4.34
3721 3937 6.038050 GCAGAAGACCCAAGATGAATAAGAAG 59.962 42.308 0.00 0.00 0.00 2.85
3780 4117 7.565680 ACACCTCTAGAGTACCATTATTTTGG 58.434 38.462 18.42 1.41 42.82 3.28
3806 4143 7.607607 TCTGAGAACAGCATAAACACATGTTAT 59.392 33.333 0.00 0.00 43.17 1.89
3811 4155 8.743085 ATAATCTGAGAACAGCATAAACACAT 57.257 30.769 0.00 0.00 43.17 3.21
3899 4243 2.986479 GTTCAAACATGTTCATTCGGCC 59.014 45.455 12.39 0.00 0.00 6.13
3903 4247 5.241506 TCTGGGAGTTCAAACATGTTCATTC 59.758 40.000 12.39 5.58 0.00 2.67
3906 4250 4.163441 TCTGGGAGTTCAAACATGTTCA 57.837 40.909 12.39 1.89 0.00 3.18
3907 4251 4.338118 TGTTCTGGGAGTTCAAACATGTTC 59.662 41.667 12.39 0.00 0.00 3.18
3947 4291 3.181429 ACCATTCCATATAAGGGCACTGG 60.181 47.826 0.00 0.00 33.57 4.00
4067 4411 6.248433 TGCTAACCTCCTGATTTCTTGATTT 58.752 36.000 0.00 0.00 0.00 2.17
4158 4521 4.948004 ACGATGACCACTCTACTACATTGA 59.052 41.667 0.00 0.00 0.00 2.57
4168 4531 1.188219 ACAGGCACGATGACCACTCT 61.188 55.000 0.00 0.00 0.00 3.24
4230 4593 2.698855 ATCCAACCAGAACCTGATCG 57.301 50.000 0.00 0.00 32.44 3.69
4305 4668 1.210931 GCATGCATGAACGCTGTGT 59.789 52.632 30.64 0.00 0.00 3.72
4333 4696 5.824624 ACATTCCAGTCATAATACCAGCAAG 59.175 40.000 0.00 0.00 0.00 4.01
4358 4722 5.986135 CCTGTAGCAGATGGTATGTTCTTAC 59.014 44.000 0.00 0.00 32.44 2.34
4369 4733 2.224233 CCTGATCACCTGTAGCAGATGG 60.224 54.545 0.00 0.00 32.44 3.51
4441 4807 3.784178 TGTGGCATTTCCCCTTAAATGA 58.216 40.909 12.25 0.00 45.61 2.57
4455 4821 7.114754 TCTCTCTAAAATGATTCTTGTGGCAT 58.885 34.615 0.00 0.00 0.00 4.40
4627 4993 5.804639 TGAAGAGCACAGGAATAGCTAAAA 58.195 37.500 0.00 0.00 39.02 1.52
4714 5081 9.292195 CCTGTAGAAAGTTAATTTTTGGGACTA 57.708 33.333 0.00 0.00 0.00 2.59
4718 5085 7.947282 TGTCCTGTAGAAAGTTAATTTTTGGG 58.053 34.615 0.00 0.00 0.00 4.12
4731 5098 3.306088 CGAAGGCTTCTGTCCTGTAGAAA 60.306 47.826 23.74 0.00 34.07 2.52
4856 5223 1.908066 GCCCAAAAGCGTACGGAGTG 61.908 60.000 18.39 0.00 45.73 3.51
4908 5275 1.388837 AACCCAACGCCAACAAGGAC 61.389 55.000 0.00 0.00 41.22 3.85
5112 5479 6.140303 GCATTAGCAAGATCAGGAAATCAA 57.860 37.500 0.00 0.00 41.58 2.57
5136 5503 5.482908 CTTACACTACAGAGTTTGAGGCAT 58.517 41.667 0.00 0.00 31.73 4.40
5137 5504 4.799586 GCTTACACTACAGAGTTTGAGGCA 60.800 45.833 0.00 0.00 31.73 4.75
5138 5505 3.680458 GCTTACACTACAGAGTTTGAGGC 59.320 47.826 0.00 0.00 31.73 4.70
5139 5506 5.140747 AGCTTACACTACAGAGTTTGAGG 57.859 43.478 0.00 0.00 31.73 3.86
5171 5542 0.256464 ACAAAACACCAGGTCCCGAA 59.744 50.000 0.00 0.00 0.00 4.30
5173 5544 1.170290 GGACAAAACACCAGGTCCCG 61.170 60.000 0.00 0.00 43.14 5.14
5215 5615 2.607187 GACACATGAACGAATCGGACT 58.393 47.619 7.80 0.00 0.00 3.85
5224 5624 1.800586 CCTGTTGAGGACACATGAACG 59.199 52.381 0.00 0.00 42.93 3.95
5256 5656 8.975439 CACCGTGTTAGGTACTATATGATTTTC 58.025 37.037 0.00 0.00 43.89 2.29
5257 5657 8.480501 ACACCGTGTTAGGTACTATATGATTTT 58.519 33.333 0.00 0.00 43.89 1.82
5259 5659 7.504911 AGACACCGTGTTAGGTACTATATGATT 59.495 37.037 5.45 0.00 43.89 2.57
5261 5661 6.359804 AGACACCGTGTTAGGTACTATATGA 58.640 40.000 5.45 0.00 43.89 2.15
5262 5662 6.630444 AGACACCGTGTTAGGTACTATATG 57.370 41.667 5.45 0.00 43.89 1.78
5263 5663 8.381636 AGATAGACACCGTGTTAGGTACTATAT 58.618 37.037 5.45 1.92 43.89 0.86
5264 5664 7.739825 AGATAGACACCGTGTTAGGTACTATA 58.260 38.462 5.45 0.00 43.89 1.31
5265 5665 6.599445 AGATAGACACCGTGTTAGGTACTAT 58.401 40.000 5.45 6.80 43.89 2.12
5266 5666 5.994250 AGATAGACACCGTGTTAGGTACTA 58.006 41.667 5.45 2.03 43.89 1.82
5268 5668 5.105997 ACAAGATAGACACCGTGTTAGGTAC 60.106 44.000 5.45 0.00 43.89 3.34
5269 5669 5.012239 ACAAGATAGACACCGTGTTAGGTA 58.988 41.667 5.45 0.00 43.89 3.08
5271 5671 4.174009 CACAAGATAGACACCGTGTTAGG 58.826 47.826 5.45 0.00 37.30 2.69
5272 5672 4.621460 CACACAAGATAGACACCGTGTTAG 59.379 45.833 5.45 0.00 35.52 2.34
5275 5675 2.364324 ACACACAAGATAGACACCGTGT 59.636 45.455 3.13 3.13 38.07 4.49
5277 5677 2.626266 TCACACACAAGATAGACACCGT 59.374 45.455 0.00 0.00 0.00 4.83
5278 5678 3.297830 TCACACACAAGATAGACACCG 57.702 47.619 0.00 0.00 0.00 4.94
5279 5679 4.820897 TCATCACACACAAGATAGACACC 58.179 43.478 0.00 0.00 0.00 4.16
5280 5680 6.369890 ACAATCATCACACACAAGATAGACAC 59.630 38.462 0.00 0.00 0.00 3.67
5281 5681 6.466812 ACAATCATCACACACAAGATAGACA 58.533 36.000 0.00 0.00 0.00 3.41
5282 5682 6.591448 TGACAATCATCACACACAAGATAGAC 59.409 38.462 0.00 0.00 0.00 2.59
5283 5683 6.591448 GTGACAATCATCACACACAAGATAGA 59.409 38.462 1.08 0.00 46.89 1.98
5284 5684 6.769076 GTGACAATCATCACACACAAGATAG 58.231 40.000 1.08 0.00 46.89 2.08
5285 5685 6.726258 GTGACAATCATCACACACAAGATA 57.274 37.500 1.08 0.00 46.89 1.98
5286 5686 5.618056 GTGACAATCATCACACACAAGAT 57.382 39.130 1.08 0.00 46.89 2.40
5347 5748 4.451629 ACAAATCTGTTACTCGGATCGT 57.548 40.909 0.00 0.00 40.87 3.73
5353 5754 9.878599 ACAAATAAAGAACAAATCTGTTACTCG 57.121 29.630 0.00 0.00 45.98 4.18
5366 5767 6.404184 CCAGTCACACACACAAATAAAGAACA 60.404 38.462 0.00 0.00 0.00 3.18
5392 5819 4.574828 AGTTACCATTAGGCATTAGCAACG 59.425 41.667 0.00 0.00 44.61 4.10
5416 6382 1.134037 GGTTACGGCCCATCCACAATA 60.134 52.381 0.00 0.00 34.01 1.90
5422 6388 2.372074 TGGAGGTTACGGCCCATCC 61.372 63.158 0.00 0.00 0.00 3.51
5426 6407 1.988406 AGAGTGGAGGTTACGGCCC 60.988 63.158 0.00 0.00 0.00 5.80
5441 6422 2.555199 CGTCCCAAGCTATTTCCAGAG 58.445 52.381 0.00 0.00 0.00 3.35
5534 6515 2.281761 CAACCTGCCGTTGGAGCT 60.282 61.111 5.98 0.00 46.89 4.09
5564 6545 2.523168 TGCTGTGTCCCCGACAGA 60.523 61.111 5.46 0.00 43.57 3.41
5577 6558 1.099879 GCCACCATCCTTAGCTGCTG 61.100 60.000 13.43 0.00 0.00 4.41
5602 6583 1.414550 GAAAGGTAGAGCTGGCCTAGG 59.585 57.143 3.67 3.67 31.43 3.02
5606 6587 0.615850 ACAGAAAGGTAGAGCTGGCC 59.384 55.000 0.00 0.00 32.82 5.36
5613 6594 6.184789 AGGTTGAAACAAACAGAAAGGTAGA 58.815 36.000 0.00 0.00 0.00 2.59
5679 6661 3.844211 TGAGGGAAAGTGGTTGCTAGTAT 59.156 43.478 0.00 0.00 0.00 2.12
5707 6689 7.722285 AGGAACAAAGGTGCTAGTGTTTATTTA 59.278 33.333 0.00 0.00 34.44 1.40
5708 6690 6.549736 AGGAACAAAGGTGCTAGTGTTTATTT 59.450 34.615 0.00 0.00 34.44 1.40
5709 6691 6.068670 AGGAACAAAGGTGCTAGTGTTTATT 58.931 36.000 0.00 0.00 34.44 1.40
5711 6693 5.043737 AGGAACAAAGGTGCTAGTGTTTA 57.956 39.130 0.00 0.00 34.44 2.01
5712 6694 3.898482 AGGAACAAAGGTGCTAGTGTTT 58.102 40.909 0.00 0.00 34.44 2.83
5713 6695 3.577805 AGGAACAAAGGTGCTAGTGTT 57.422 42.857 0.00 0.00 36.92 3.32
5714 6696 4.699925 TTAGGAACAAAGGTGCTAGTGT 57.300 40.909 0.00 0.00 0.00 3.55
5717 6699 9.614792 ACTTATATTTAGGAACAAAGGTGCTAG 57.385 33.333 0.00 0.00 0.00 3.42
5718 6700 9.609346 GACTTATATTTAGGAACAAAGGTGCTA 57.391 33.333 0.00 0.00 0.00 3.49
5719 6701 8.329502 AGACTTATATTTAGGAACAAAGGTGCT 58.670 33.333 0.00 0.00 0.00 4.40
5720 6702 8.507524 AGACTTATATTTAGGAACAAAGGTGC 57.492 34.615 0.00 0.00 0.00 5.01
5847 6906 4.776837 TGTCGATAAGTACCCCCTTGTTAA 59.223 41.667 0.00 0.00 0.00 2.01
5848 6907 4.352009 TGTCGATAAGTACCCCCTTGTTA 58.648 43.478 0.00 0.00 0.00 2.41
5853 6912 5.070823 TCTTATGTCGATAAGTACCCCCT 57.929 43.478 5.85 0.00 41.33 4.79
5857 6917 7.223971 TGCACAAATCTTATGTCGATAAGTACC 59.776 37.037 5.85 0.00 41.33 3.34
5891 6951 0.034670 ACCATTCAGCAAGGCTCTCC 60.035 55.000 0.00 0.00 36.40 3.71
5916 6981 6.573664 TGTACTCCTTGGAATTCACAAATG 57.426 37.500 7.93 4.25 0.00 2.32
5937 7002 0.740737 GCTGCACTTGTCCAACTTGT 59.259 50.000 0.00 0.00 0.00 3.16
6064 7129 3.551485 GGCTATAATTTTTGGCTTGTGCG 59.449 43.478 0.00 0.00 40.82 5.34
6126 7204 4.282068 CGTCCTTCACATGTTGAAACTTG 58.718 43.478 0.00 7.35 43.90 3.16
6144 7222 0.458370 GTGGCCAATCATTTGCGTCC 60.458 55.000 7.24 0.00 0.00 4.79
6167 7245 1.677217 GGGAATGAGCTGGTGTCAGTC 60.677 57.143 0.00 0.00 42.78 3.51
6194 7272 2.931320 GCACCTGCAGTACACTTACTCC 60.931 54.545 13.81 0.00 36.31 3.85
6278 7359 3.253432 CCTTGTGAGAAGCCTTGTTTACC 59.747 47.826 0.00 0.00 0.00 2.85
6284 7365 2.808543 GTGTACCTTGTGAGAAGCCTTG 59.191 50.000 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.