Multiple sequence alignment - TraesCS3B01G269100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G269100 chr3B 100.000 2270 0 0 1 2270 433573013 433570744 0.000000e+00 4193.0
1 TraesCS3B01G269100 chr3B 96.678 301 9 1 86 385 292754038 292753738 1.210000e-137 499.0
2 TraesCS3B01G269100 chr3A 90.158 1199 49 12 482 1657 452981590 452980438 0.000000e+00 1496.0
3 TraesCS3B01G269100 chr3A 90.867 427 21 5 1760 2168 452980020 452979594 7.080000e-155 556.0
4 TraesCS3B01G269100 chr3A 95.973 298 10 2 87 383 195594847 195595143 1.220000e-132 483.0
5 TraesCS3B01G269100 chr3A 100.000 106 0 0 2165 2270 632556809 632556704 1.780000e-46 196.0
6 TraesCS3B01G269100 chr3A 93.878 98 5 1 1661 1757 452980154 452980057 1.820000e-31 147.0
7 TraesCS3B01G269100 chr3A 92.157 102 6 2 379 480 452981853 452981754 2.350000e-30 143.0
8 TraesCS3B01G269100 chr3A 92.958 71 5 0 1 71 452982445 452982375 1.110000e-18 104.0
9 TraesCS3B01G269100 chr3D 94.504 655 31 3 709 1363 334163175 334162526 0.000000e+00 1005.0
10 TraesCS3B01G269100 chr3D 97.066 409 8 1 1760 2168 334161796 334161392 0.000000e+00 686.0
11 TraesCS3B01G269100 chr3D 95.511 401 13 3 1362 1757 334162232 334161832 8.840000e-179 636.0
12 TraesCS3B01G269100 chr3D 91.954 348 18 3 377 715 334164029 334163683 1.580000e-131 479.0
13 TraesCS3B01G269100 chr3D 92.331 326 19 5 83 404 87135706 87136029 2.050000e-125 459.0
14 TraesCS3B01G269100 chr3D 95.455 66 3 0 1 66 334164101 334164036 3.080000e-19 106.0
15 TraesCS3B01G269100 chr4B 97.010 301 8 1 86 385 96788499 96788199 2.600000e-139 505.0
16 TraesCS3B01G269100 chr4B 90.517 348 26 6 39 383 249145383 249145726 9.560000e-124 453.0
17 TraesCS3B01G269100 chr4B 96.552 116 2 2 2156 2270 370705573 370705687 8.280000e-45 191.0
18 TraesCS3B01G269100 chr7B 97.000 300 8 1 87 385 369712473 369712174 9.360000e-139 503.0
19 TraesCS3B01G269100 chr7B 99.074 108 1 0 2163 2270 640942148 640942255 6.400000e-46 195.0
20 TraesCS3B01G269100 chr2B 98.221 281 4 1 103 382 313391364 313391084 7.290000e-135 490.0
21 TraesCS3B01G269100 chr2D 95.318 299 12 2 85 382 555068301 555068004 7.340000e-130 473.0
22 TraesCS3B01G269100 chr6B 95.017 301 13 2 86 385 290140479 290140180 2.640000e-129 472.0
23 TraesCS3B01G269100 chr6B 87.500 48 5 1 446 493 6846030 6846076 1.000000e-03 54.7
24 TraesCS3B01G269100 chr5B 78.292 843 101 48 716 1531 463945355 463944568 3.410000e-128 468.0
25 TraesCS3B01G269100 chr5B 80.347 519 60 22 858 1363 463912520 463912031 2.770000e-94 355.0
26 TraesCS3B01G269100 chr5B 83.333 162 23 4 1776 1933 463937362 463937201 1.820000e-31 147.0
27 TraesCS3B01G269100 chr5B 82.099 162 25 4 1776 1933 463944264 463944103 3.930000e-28 135.0
28 TraesCS3B01G269100 chr5D 81.260 619 72 23 716 1317 385978804 385978213 5.710000e-126 460.0
29 TraesCS3B01G269100 chr5D 77.658 837 112 46 779 1564 386058317 386057505 7.440000e-120 440.0
30 TraesCS3B01G269100 chr5D 77.660 846 106 45 716 1531 386067657 386066865 2.680000e-119 438.0
31 TraesCS3B01G269100 chr5D 78.964 618 73 31 718 1317 386036118 386035540 3.560000e-98 368.0
32 TraesCS3B01G269100 chr5D 79.181 586 79 27 753 1315 386046322 386045757 1.280000e-97 366.0
33 TraesCS3B01G269100 chr5D 82.099 162 25 4 1776 1933 386066579 386066418 3.930000e-28 135.0
34 TraesCS3B01G269100 chr5D 92.647 68 5 0 1866 1933 386035243 386035176 5.160000e-17 99.0
35 TraesCS3B01G269100 chr5A 80.303 660 77 26 718 1363 487925178 487924558 1.240000e-122 449.0
36 TraesCS3B01G269100 chr5A 77.035 823 117 44 779 1567 487985127 487984343 7.550000e-110 407.0
37 TraesCS3B01G269100 chr5A 77.390 774 81 45 716 1449 487941095 487940376 7.660000e-100 374.0
38 TraesCS3B01G269100 chr5A 81.595 163 23 5 1776 1931 487940121 487939959 6.580000e-26 128.0
39 TraesCS3B01G269100 chr1A 99.107 112 0 1 2160 2270 341181108 341181219 1.380000e-47 200.0
40 TraesCS3B01G269100 chr4A 100.000 107 0 0 2164 2270 587326069 587326175 4.950000e-47 198.0
41 TraesCS3B01G269100 chr6A 100.000 106 0 0 2165 2270 93276597 93276492 1.780000e-46 196.0
42 TraesCS3B01G269100 chr2A 100.000 106 0 0 2165 2270 740400941 740400836 1.780000e-46 196.0
43 TraesCS3B01G269100 chr2A 98.182 110 1 1 2161 2270 590981062 590981170 8.280000e-45 191.0
44 TraesCS3B01G269100 chrUn 98.182 110 2 0 2161 2270 268572240 268572131 2.300000e-45 193.0
45 TraesCS3B01G269100 chr7A 95.455 44 2 0 12 55 102041360 102041317 1.120000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G269100 chr3B 433570744 433573013 2269 True 4193.0 4193 100.0000 1 2270 1 chr3B.!!$R2 2269
1 TraesCS3B01G269100 chr3A 452979594 452982445 2851 True 489.2 1496 92.0036 1 2168 5 chr3A.!!$R2 2167
2 TraesCS3B01G269100 chr3D 334161392 334164101 2709 True 582.4 1005 94.8980 1 2168 5 chr3D.!!$R1 2167
3 TraesCS3B01G269100 chr5B 463944103 463945355 1252 True 301.5 468 80.1955 716 1933 2 chr5B.!!$R3 1217
4 TraesCS3B01G269100 chr5D 385978213 385978804 591 True 460.0 460 81.2600 716 1317 1 chr5D.!!$R1 601
5 TraesCS3B01G269100 chr5D 386057505 386058317 812 True 440.0 440 77.6580 779 1564 1 chr5D.!!$R3 785
6 TraesCS3B01G269100 chr5D 386045757 386046322 565 True 366.0 366 79.1810 753 1315 1 chr5D.!!$R2 562
7 TraesCS3B01G269100 chr5D 386066418 386067657 1239 True 286.5 438 79.8795 716 1933 2 chr5D.!!$R5 1217
8 TraesCS3B01G269100 chr5D 386035176 386036118 942 True 233.5 368 85.8055 718 1933 2 chr5D.!!$R4 1215
9 TraesCS3B01G269100 chr5A 487924558 487925178 620 True 449.0 449 80.3030 718 1363 1 chr5A.!!$R1 645
10 TraesCS3B01G269100 chr5A 487984343 487985127 784 True 407.0 407 77.0350 779 1567 1 chr5A.!!$R2 788
11 TraesCS3B01G269100 chr5A 487939959 487941095 1136 True 251.0 374 79.4925 716 1931 2 chr5A.!!$R3 1215

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
324 833 0.027586 GTTAATGCACCGCGCCTAAG 59.972 55.0 0.0 0.0 41.33 2.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2232 4290 0.17899 GTCAGGGGTGCTTGGAACTT 60.179 55.0 0.0 0.0 0.0 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 3.418047 ACCCAAAATACGAGGGAAACTG 58.582 45.455 3.32 0.00 45.80 3.16
82 591 5.882557 AGGGAAACTGCTAGTAACAATCATG 59.117 40.000 0.00 0.00 0.00 3.07
83 592 5.066505 GGGAAACTGCTAGTAACAATCATGG 59.933 44.000 0.00 0.00 0.00 3.66
84 593 5.880332 GGAAACTGCTAGTAACAATCATGGA 59.120 40.000 0.00 0.00 0.00 3.41
85 594 6.037610 GGAAACTGCTAGTAACAATCATGGAG 59.962 42.308 0.00 0.00 0.00 3.86
86 595 5.683876 ACTGCTAGTAACAATCATGGAGT 57.316 39.130 0.00 0.00 0.00 3.85
87 596 6.791867 ACTGCTAGTAACAATCATGGAGTA 57.208 37.500 0.00 0.00 0.00 2.59
88 597 6.574350 ACTGCTAGTAACAATCATGGAGTAC 58.426 40.000 0.00 0.00 0.00 2.73
89 598 6.381420 ACTGCTAGTAACAATCATGGAGTACT 59.619 38.462 0.00 0.00 31.65 2.73
90 599 6.806751 TGCTAGTAACAATCATGGAGTACTC 58.193 40.000 14.87 14.87 30.31 2.59
101 610 2.259266 GGAGTACTCCCTCCGTCTAG 57.741 60.000 28.87 0.00 43.94 2.43
102 611 1.202794 GGAGTACTCCCTCCGTCTAGG 60.203 61.905 28.87 0.00 43.94 3.02
103 612 1.490069 GAGTACTCCCTCCGTCTAGGT 59.510 57.143 12.13 0.00 41.99 3.08
104 613 1.212441 AGTACTCCCTCCGTCTAGGTG 59.788 57.143 0.00 0.00 41.99 4.00
105 614 1.211457 GTACTCCCTCCGTCTAGGTGA 59.789 57.143 0.00 0.00 41.99 4.02
106 615 0.256464 ACTCCCTCCGTCTAGGTGAG 59.744 60.000 0.00 0.00 41.99 3.51
107 616 0.256464 CTCCCTCCGTCTAGGTGAGT 59.744 60.000 0.00 0.00 41.99 3.41
108 617 1.489649 CTCCCTCCGTCTAGGTGAGTA 59.510 57.143 0.00 0.00 41.99 2.59
109 618 1.918262 TCCCTCCGTCTAGGTGAGTAA 59.082 52.381 0.00 0.00 41.99 2.24
110 619 2.092538 TCCCTCCGTCTAGGTGAGTAAG 60.093 54.545 0.00 0.00 41.99 2.34
111 620 2.356947 CCCTCCGTCTAGGTGAGTAAGT 60.357 54.545 0.00 0.00 41.99 2.24
112 621 2.944349 CCTCCGTCTAGGTGAGTAAGTC 59.056 54.545 0.00 0.00 41.99 3.01
113 622 3.607741 CTCCGTCTAGGTGAGTAAGTCA 58.392 50.000 0.00 0.00 41.99 3.41
114 623 4.200874 CTCCGTCTAGGTGAGTAAGTCAT 58.799 47.826 0.00 0.00 41.99 3.06
115 624 4.197750 TCCGTCTAGGTGAGTAAGTCATC 58.802 47.826 0.00 0.00 41.99 2.92
117 626 4.641094 CCGTCTAGGTGAGTAAGTCATCTT 59.359 45.833 0.00 0.00 45.09 2.40
118 627 5.821470 CCGTCTAGGTGAGTAAGTCATCTTA 59.179 44.000 0.00 0.00 45.09 2.10
119 628 6.017770 CCGTCTAGGTGAGTAAGTCATCTTAG 60.018 46.154 0.00 0.00 45.09 2.18
120 629 6.017770 CGTCTAGGTGAGTAAGTCATCTTAGG 60.018 46.154 0.00 0.00 45.09 2.69
121 630 6.829811 GTCTAGGTGAGTAAGTCATCTTAGGT 59.170 42.308 0.00 0.00 45.09 3.08
122 631 7.339976 GTCTAGGTGAGTAAGTCATCTTAGGTT 59.660 40.741 0.00 0.00 45.09 3.50
123 632 6.287589 AGGTGAGTAAGTCATCTTAGGTTG 57.712 41.667 0.00 0.00 45.09 3.77
124 633 5.780793 AGGTGAGTAAGTCATCTTAGGTTGT 59.219 40.000 0.00 0.00 45.09 3.32
125 634 5.869888 GGTGAGTAAGTCATCTTAGGTTGTG 59.130 44.000 0.00 0.00 37.56 3.33
126 635 5.348997 GTGAGTAAGTCATCTTAGGTTGTGC 59.651 44.000 0.00 0.00 37.56 4.57
127 636 5.011635 TGAGTAAGTCATCTTAGGTTGTGCA 59.988 40.000 0.00 0.00 36.90 4.57
128 637 5.238583 AGTAAGTCATCTTAGGTTGTGCAC 58.761 41.667 10.75 10.75 36.90 4.57
129 638 4.392138 GTAAGTCATCTTAGGTTGTGCACC 59.608 45.833 15.69 0.00 39.22 5.01
130 639 4.041075 TAAGTCATCTTAGGTTGTGCACCA 59.959 41.667 15.69 0.00 40.33 4.17
131 640 5.280470 TAAGTCATCTTAGGTTGTGCACCAT 60.280 40.000 15.69 0.00 40.33 3.55
132 641 7.296512 TAAGTCATCTTAGGTTGTGCACCATG 61.297 42.308 15.69 3.96 40.33 3.66
133 642 9.370473 TAAGTCATCTTAGGTTGTGCACCATGA 62.370 40.741 15.69 6.13 40.33 3.07
136 645 4.172625 GGTTGTGCACCATGACCA 57.827 55.556 15.69 0.00 46.42 4.02
137 646 2.424474 GGTTGTGCACCATGACCAA 58.576 52.632 15.69 0.00 46.42 3.67
138 647 0.314935 GGTTGTGCACCATGACCAAG 59.685 55.000 15.69 0.00 46.42 3.61
139 648 0.314935 GTTGTGCACCATGACCAAGG 59.685 55.000 15.69 0.00 0.00 3.61
140 649 0.184692 TTGTGCACCATGACCAAGGA 59.815 50.000 15.69 0.00 0.00 3.36
141 650 0.250858 TGTGCACCATGACCAAGGAG 60.251 55.000 15.69 0.00 0.00 3.69
142 651 0.962356 GTGCACCATGACCAAGGAGG 60.962 60.000 5.22 0.00 45.67 4.30
143 652 1.133181 TGCACCATGACCAAGGAGGA 61.133 55.000 0.00 0.00 41.22 3.71
144 653 0.393537 GCACCATGACCAAGGAGGAG 60.394 60.000 0.00 0.00 41.22 3.69
145 654 0.254178 CACCATGACCAAGGAGGAGG 59.746 60.000 0.00 0.00 41.22 4.30
146 655 0.916358 ACCATGACCAAGGAGGAGGG 60.916 60.000 0.00 0.00 41.22 4.30
147 656 1.639635 CCATGACCAAGGAGGAGGGG 61.640 65.000 0.00 0.00 41.22 4.79
148 657 0.621571 CATGACCAAGGAGGAGGGGA 60.622 60.000 0.00 0.00 41.22 4.81
149 658 0.121197 ATGACCAAGGAGGAGGGGAA 59.879 55.000 0.00 0.00 41.22 3.97
150 659 0.104144 TGACCAAGGAGGAGGGGAAA 60.104 55.000 0.00 0.00 41.22 3.13
151 660 1.073098 GACCAAGGAGGAGGGGAAAA 58.927 55.000 0.00 0.00 41.22 2.29
152 661 0.778083 ACCAAGGAGGAGGGGAAAAC 59.222 55.000 0.00 0.00 41.22 2.43
153 662 0.322546 CCAAGGAGGAGGGGAAAACG 60.323 60.000 0.00 0.00 41.22 3.60
154 663 0.690762 CAAGGAGGAGGGGAAAACGA 59.309 55.000 0.00 0.00 0.00 3.85
155 664 0.984995 AAGGAGGAGGGGAAAACGAG 59.015 55.000 0.00 0.00 0.00 4.18
156 665 0.116541 AGGAGGAGGGGAAAACGAGA 59.883 55.000 0.00 0.00 0.00 4.04
157 666 0.537653 GGAGGAGGGGAAAACGAGAG 59.462 60.000 0.00 0.00 0.00 3.20
158 667 1.558233 GAGGAGGGGAAAACGAGAGA 58.442 55.000 0.00 0.00 0.00 3.10
159 668 1.205179 GAGGAGGGGAAAACGAGAGAC 59.795 57.143 0.00 0.00 0.00 3.36
160 669 0.249676 GGAGGGGAAAACGAGAGACC 59.750 60.000 0.00 0.00 0.00 3.85
161 670 1.268066 GAGGGGAAAACGAGAGACCT 58.732 55.000 0.00 0.00 0.00 3.85
162 671 1.624312 GAGGGGAAAACGAGAGACCTT 59.376 52.381 0.00 0.00 0.00 3.50
163 672 2.830321 GAGGGGAAAACGAGAGACCTTA 59.170 50.000 0.00 0.00 0.00 2.69
164 673 3.245441 AGGGGAAAACGAGAGACCTTAA 58.755 45.455 0.00 0.00 0.00 1.85
165 674 3.844804 AGGGGAAAACGAGAGACCTTAAT 59.155 43.478 0.00 0.00 0.00 1.40
166 675 3.939592 GGGGAAAACGAGAGACCTTAATG 59.060 47.826 0.00 0.00 0.00 1.90
167 676 4.565028 GGGGAAAACGAGAGACCTTAATGT 60.565 45.833 0.00 0.00 0.00 2.71
168 677 5.001874 GGGAAAACGAGAGACCTTAATGTT 58.998 41.667 0.00 0.00 0.00 2.71
169 678 5.472478 GGGAAAACGAGAGACCTTAATGTTT 59.528 40.000 0.00 0.00 0.00 2.83
170 679 6.652062 GGGAAAACGAGAGACCTTAATGTTTA 59.348 38.462 0.00 0.00 0.00 2.01
171 680 7.336176 GGGAAAACGAGAGACCTTAATGTTTAT 59.664 37.037 0.00 0.00 0.00 1.40
172 681 8.727910 GGAAAACGAGAGACCTTAATGTTTATT 58.272 33.333 0.00 0.00 0.00 1.40
174 683 9.893305 AAAACGAGAGACCTTAATGTTTATTTG 57.107 29.630 0.00 0.00 0.00 2.32
175 684 7.073342 ACGAGAGACCTTAATGTTTATTTGC 57.927 36.000 0.00 0.00 0.00 3.68
176 685 6.879458 ACGAGAGACCTTAATGTTTATTTGCT 59.121 34.615 0.00 0.00 0.00 3.91
177 686 8.038944 ACGAGAGACCTTAATGTTTATTTGCTA 58.961 33.333 0.00 0.00 0.00 3.49
178 687 8.879759 CGAGAGACCTTAATGTTTATTTGCTAA 58.120 33.333 0.00 0.00 0.00 3.09
212 721 3.855689 ATGCAATGAACTAACCACTGC 57.144 42.857 0.00 0.00 0.00 4.40
213 722 2.580962 TGCAATGAACTAACCACTGCA 58.419 42.857 0.00 0.00 36.06 4.41
214 723 3.156293 TGCAATGAACTAACCACTGCAT 58.844 40.909 0.00 0.00 33.65 3.96
215 724 3.057386 TGCAATGAACTAACCACTGCATG 60.057 43.478 0.00 0.00 33.65 4.06
216 725 3.057315 GCAATGAACTAACCACTGCATGT 60.057 43.478 0.00 0.00 0.00 3.21
217 726 4.726416 CAATGAACTAACCACTGCATGTC 58.274 43.478 0.00 0.00 0.00 3.06
218 727 2.412870 TGAACTAACCACTGCATGTCG 58.587 47.619 0.00 0.00 0.00 4.35
219 728 2.224185 TGAACTAACCACTGCATGTCGT 60.224 45.455 0.00 0.00 0.00 4.34
220 729 1.795768 ACTAACCACTGCATGTCGTG 58.204 50.000 8.87 8.87 0.00 4.35
221 730 1.070134 ACTAACCACTGCATGTCGTGT 59.930 47.619 13.12 2.00 0.00 4.49
222 731 2.143122 CTAACCACTGCATGTCGTGTT 58.857 47.619 13.12 10.39 0.00 3.32
223 732 1.388547 AACCACTGCATGTCGTGTTT 58.611 45.000 13.12 5.09 0.00 2.83
224 733 0.662619 ACCACTGCATGTCGTGTTTG 59.337 50.000 13.12 3.87 0.00 2.93
225 734 0.040157 CCACTGCATGTCGTGTTTGG 60.040 55.000 13.12 0.00 0.00 3.28
226 735 0.662619 CACTGCATGTCGTGTTTGGT 59.337 50.000 7.95 0.00 0.00 3.67
227 736 1.870402 CACTGCATGTCGTGTTTGGTA 59.130 47.619 7.95 0.00 0.00 3.25
228 737 1.871039 ACTGCATGTCGTGTTTGGTAC 59.129 47.619 0.00 0.00 0.00 3.34
229 738 2.143122 CTGCATGTCGTGTTTGGTACT 58.857 47.619 0.00 0.00 0.00 2.73
230 739 2.139917 TGCATGTCGTGTTTGGTACTC 58.860 47.619 0.00 0.00 0.00 2.59
231 740 2.224185 TGCATGTCGTGTTTGGTACTCT 60.224 45.455 0.00 0.00 0.00 3.24
232 741 2.412089 GCATGTCGTGTTTGGTACTCTC 59.588 50.000 0.00 0.00 0.00 3.20
233 742 3.649073 CATGTCGTGTTTGGTACTCTCA 58.351 45.455 0.00 0.00 0.00 3.27
234 743 3.804786 TGTCGTGTTTGGTACTCTCAA 57.195 42.857 0.00 0.00 0.00 3.02
235 744 3.713288 TGTCGTGTTTGGTACTCTCAAG 58.287 45.455 0.00 0.00 0.00 3.02
236 745 3.131577 TGTCGTGTTTGGTACTCTCAAGT 59.868 43.478 0.00 0.00 39.66 3.16
237 746 3.734735 GTCGTGTTTGGTACTCTCAAGTC 59.265 47.826 0.00 0.00 36.92 3.01
238 747 3.382227 TCGTGTTTGGTACTCTCAAGTCA 59.618 43.478 0.00 0.00 36.92 3.41
239 748 4.038763 TCGTGTTTGGTACTCTCAAGTCAT 59.961 41.667 0.00 0.00 36.92 3.06
240 749 4.750098 CGTGTTTGGTACTCTCAAGTCATT 59.250 41.667 0.00 0.00 36.92 2.57
241 750 5.924254 CGTGTTTGGTACTCTCAAGTCATTA 59.076 40.000 0.00 0.00 36.92 1.90
242 751 6.422701 CGTGTTTGGTACTCTCAAGTCATTAA 59.577 38.462 0.00 0.00 36.92 1.40
243 752 7.042321 CGTGTTTGGTACTCTCAAGTCATTAAA 60.042 37.037 0.00 0.00 36.92 1.52
244 753 8.617809 GTGTTTGGTACTCTCAAGTCATTAAAA 58.382 33.333 0.00 0.00 36.92 1.52
245 754 8.836413 TGTTTGGTACTCTCAAGTCATTAAAAG 58.164 33.333 0.00 0.00 36.92 2.27
246 755 7.435068 TTGGTACTCTCAAGTCATTAAAAGC 57.565 36.000 0.00 0.00 36.92 3.51
247 756 6.530120 TGGTACTCTCAAGTCATTAAAAGCA 58.470 36.000 0.00 0.00 36.92 3.91
248 757 7.168219 TGGTACTCTCAAGTCATTAAAAGCAT 58.832 34.615 0.00 0.00 36.92 3.79
249 758 7.119699 TGGTACTCTCAAGTCATTAAAAGCATG 59.880 37.037 0.00 0.00 36.92 4.06
250 759 5.947443 ACTCTCAAGTCATTAAAAGCATGC 58.053 37.500 10.51 10.51 0.00 4.06
251 760 5.474532 ACTCTCAAGTCATTAAAAGCATGCA 59.525 36.000 21.98 0.00 0.00 3.96
252 761 5.702865 TCTCAAGTCATTAAAAGCATGCAC 58.297 37.500 21.98 6.43 0.00 4.57
253 762 5.241285 TCTCAAGTCATTAAAAGCATGCACA 59.759 36.000 21.98 0.00 0.00 4.57
254 763 5.221880 TCAAGTCATTAAAAGCATGCACAC 58.778 37.500 21.98 4.04 0.00 3.82
255 764 4.178545 AGTCATTAAAAGCATGCACACC 57.821 40.909 21.98 0.00 0.00 4.16
256 765 3.056607 AGTCATTAAAAGCATGCACACCC 60.057 43.478 21.98 0.00 0.00 4.61
257 766 3.056607 GTCATTAAAAGCATGCACACCCT 60.057 43.478 21.98 0.00 0.00 4.34
258 767 3.577848 TCATTAAAAGCATGCACACCCTT 59.422 39.130 21.98 0.36 0.00 3.95
259 768 3.658757 TTAAAAGCATGCACACCCTTC 57.341 42.857 21.98 0.00 0.00 3.46
260 769 1.412079 AAAAGCATGCACACCCTTCA 58.588 45.000 21.98 0.00 0.00 3.02
261 770 1.636148 AAAGCATGCACACCCTTCAT 58.364 45.000 21.98 0.00 0.00 2.57
262 771 1.180029 AAGCATGCACACCCTTCATC 58.820 50.000 21.98 0.00 0.00 2.92
263 772 0.330604 AGCATGCACACCCTTCATCT 59.669 50.000 21.98 0.00 0.00 2.90
264 773 0.737219 GCATGCACACCCTTCATCTC 59.263 55.000 14.21 0.00 0.00 2.75
265 774 1.681166 GCATGCACACCCTTCATCTCT 60.681 52.381 14.21 0.00 0.00 3.10
266 775 2.719739 CATGCACACCCTTCATCTCTT 58.280 47.619 0.00 0.00 0.00 2.85
267 776 2.957402 TGCACACCCTTCATCTCTTT 57.043 45.000 0.00 0.00 0.00 2.52
268 777 4.264253 CATGCACACCCTTCATCTCTTTA 58.736 43.478 0.00 0.00 0.00 1.85
269 778 4.574674 TGCACACCCTTCATCTCTTTAT 57.425 40.909 0.00 0.00 0.00 1.40
270 779 4.922206 TGCACACCCTTCATCTCTTTATT 58.078 39.130 0.00 0.00 0.00 1.40
271 780 4.701651 TGCACACCCTTCATCTCTTTATTG 59.298 41.667 0.00 0.00 0.00 1.90
272 781 4.096984 GCACACCCTTCATCTCTTTATTGG 59.903 45.833 0.00 0.00 0.00 3.16
273 782 5.256474 CACACCCTTCATCTCTTTATTGGT 58.744 41.667 0.00 0.00 0.00 3.67
274 783 5.711976 CACACCCTTCATCTCTTTATTGGTT 59.288 40.000 0.00 0.00 0.00 3.67
275 784 6.209391 CACACCCTTCATCTCTTTATTGGTTT 59.791 38.462 0.00 0.00 0.00 3.27
276 785 7.393234 CACACCCTTCATCTCTTTATTGGTTTA 59.607 37.037 0.00 0.00 0.00 2.01
277 786 8.116026 ACACCCTTCATCTCTTTATTGGTTTAT 58.884 33.333 0.00 0.00 0.00 1.40
278 787 9.627123 CACCCTTCATCTCTTTATTGGTTTATA 57.373 33.333 0.00 0.00 0.00 0.98
296 805 9.239002 TGGTTTATATGTCAAGAAACAAAAACG 57.761 29.630 8.84 0.00 34.51 3.60
297 806 9.453325 GGTTTATATGTCAAGAAACAAAAACGA 57.547 29.630 0.00 0.00 34.51 3.85
299 808 9.672086 TTTATATGTCAAGAAACAAAAACGAGG 57.328 29.630 0.00 0.00 31.81 4.63
300 809 5.576447 ATGTCAAGAAACAAAAACGAGGT 57.424 34.783 0.00 0.00 31.81 3.85
301 810 6.687081 ATGTCAAGAAACAAAAACGAGGTA 57.313 33.333 0.00 0.00 31.81 3.08
302 811 6.114221 TGTCAAGAAACAAAAACGAGGTAG 57.886 37.500 0.00 0.00 0.00 3.18
303 812 5.875910 TGTCAAGAAACAAAAACGAGGTAGA 59.124 36.000 0.00 0.00 0.00 2.59
304 813 6.372103 TGTCAAGAAACAAAAACGAGGTAGAA 59.628 34.615 0.00 0.00 0.00 2.10
305 814 6.905609 GTCAAGAAACAAAAACGAGGTAGAAG 59.094 38.462 0.00 0.00 0.00 2.85
306 815 6.596497 TCAAGAAACAAAAACGAGGTAGAAGT 59.404 34.615 0.00 0.00 0.00 3.01
307 816 6.997239 AGAAACAAAAACGAGGTAGAAGTT 57.003 33.333 0.00 0.00 0.00 2.66
308 817 8.392612 CAAGAAACAAAAACGAGGTAGAAGTTA 58.607 33.333 0.00 0.00 0.00 2.24
309 818 8.496707 AGAAACAAAAACGAGGTAGAAGTTAA 57.503 30.769 0.00 0.00 0.00 2.01
310 819 9.117183 AGAAACAAAAACGAGGTAGAAGTTAAT 57.883 29.630 0.00 0.00 0.00 1.40
311 820 9.166126 GAAACAAAAACGAGGTAGAAGTTAATG 57.834 33.333 0.00 0.00 0.00 1.90
312 821 6.665465 ACAAAAACGAGGTAGAAGTTAATGC 58.335 36.000 0.00 0.00 0.00 3.56
313 822 6.261381 ACAAAAACGAGGTAGAAGTTAATGCA 59.739 34.615 0.00 0.00 0.00 3.96
314 823 5.857822 AAACGAGGTAGAAGTTAATGCAC 57.142 39.130 0.00 0.00 0.00 4.57
315 824 3.858247 ACGAGGTAGAAGTTAATGCACC 58.142 45.455 0.00 0.00 0.00 5.01
316 825 2.858344 CGAGGTAGAAGTTAATGCACCG 59.142 50.000 0.00 0.00 0.00 4.94
317 826 2.608090 GAGGTAGAAGTTAATGCACCGC 59.392 50.000 0.00 0.00 0.00 5.68
318 827 1.326548 GGTAGAAGTTAATGCACCGCG 59.673 52.381 0.00 0.00 0.00 6.46
319 828 1.003851 TAGAAGTTAATGCACCGCGC 58.996 50.000 0.00 0.00 42.89 6.86
320 829 1.226295 GAAGTTAATGCACCGCGCC 60.226 57.895 0.00 0.00 41.33 6.53
321 830 1.644786 GAAGTTAATGCACCGCGCCT 61.645 55.000 0.00 0.00 41.33 5.52
322 831 0.391927 AAGTTAATGCACCGCGCCTA 60.392 50.000 0.00 0.00 41.33 3.93
323 832 0.391927 AGTTAATGCACCGCGCCTAA 60.392 50.000 0.00 0.00 41.33 2.69
324 833 0.027586 GTTAATGCACCGCGCCTAAG 59.972 55.000 0.00 0.00 41.33 2.18
325 834 0.391927 TTAATGCACCGCGCCTAAGT 60.392 50.000 0.00 0.00 41.33 2.24
326 835 0.460722 TAATGCACCGCGCCTAAGTA 59.539 50.000 0.00 0.00 41.33 2.24
327 836 0.179056 AATGCACCGCGCCTAAGTAT 60.179 50.000 0.00 0.00 41.33 2.12
328 837 0.179056 ATGCACCGCGCCTAAGTATT 60.179 50.000 0.00 0.00 41.33 1.89
329 838 0.391927 TGCACCGCGCCTAAGTATTT 60.392 50.000 0.00 0.00 41.33 1.40
330 839 0.730840 GCACCGCGCCTAAGTATTTT 59.269 50.000 0.00 0.00 32.94 1.82
331 840 1.531058 GCACCGCGCCTAAGTATTTTG 60.531 52.381 0.00 0.00 32.94 2.44
332 841 1.063469 CACCGCGCCTAAGTATTTTGG 59.937 52.381 0.00 0.00 33.04 3.28
333 842 0.661020 CCGCGCCTAAGTATTTTGGG 59.339 55.000 0.00 0.00 30.91 4.12
334 843 1.658994 CGCGCCTAAGTATTTTGGGA 58.341 50.000 0.00 0.00 30.91 4.37
335 844 2.218603 CGCGCCTAAGTATTTTGGGAT 58.781 47.619 0.00 0.00 30.91 3.85
336 845 2.616842 CGCGCCTAAGTATTTTGGGATT 59.383 45.455 0.00 0.00 30.91 3.01
337 846 3.810941 CGCGCCTAAGTATTTTGGGATTA 59.189 43.478 0.00 0.00 30.91 1.75
338 847 4.454504 CGCGCCTAAGTATTTTGGGATTAT 59.545 41.667 0.00 0.00 30.91 1.28
339 848 5.048991 CGCGCCTAAGTATTTTGGGATTATT 60.049 40.000 0.00 0.00 30.91 1.40
340 849 6.514376 CGCGCCTAAGTATTTTGGGATTATTT 60.514 38.462 0.00 0.00 30.91 1.40
341 850 7.308109 CGCGCCTAAGTATTTTGGGATTATTTA 60.308 37.037 0.00 0.00 30.91 1.40
342 851 8.021396 GCGCCTAAGTATTTTGGGATTATTTAG 58.979 37.037 0.00 0.00 30.91 1.85
343 852 9.063615 CGCCTAAGTATTTTGGGATTATTTAGT 57.936 33.333 0.99 0.00 30.91 2.24
373 882 6.665992 AAGATGACTTACACACCTAGACAA 57.334 37.500 0.00 0.00 34.28 3.18
374 883 6.665992 AGATGACTTACACACCTAGACAAA 57.334 37.500 0.00 0.00 0.00 2.83
375 884 6.692486 AGATGACTTACACACCTAGACAAAG 58.308 40.000 0.00 0.00 0.00 2.77
415 924 6.161855 TCCTATATTTATGGCTATCCGCAG 57.838 41.667 0.00 0.00 41.67 5.18
421 930 0.179045 ATGGCTATCCGCAGAACCAC 60.179 55.000 0.00 0.00 41.67 4.16
431 940 1.208358 CAGAACCACTGCATGCACG 59.792 57.895 18.46 15.38 39.86 5.34
445 954 1.128200 TGCACGTATTGATAGCCCCT 58.872 50.000 0.00 0.00 0.00 4.79
627 1308 2.604118 CCGGCCGGGGATATTATCT 58.396 57.895 37.42 0.00 0.00 1.98
703 1384 2.987282 TTTGTCCGCGCTGAGAAGCA 62.987 55.000 11.05 0.00 34.41 3.91
707 1388 2.523507 CCGCGCTGAGAAGCATGAG 61.524 63.158 5.56 0.00 34.41 2.90
841 2048 2.545952 GCAGTCCTGATACCACCATACG 60.546 54.545 0.00 0.00 0.00 3.06
919 2146 0.182537 CCAAACCATAGCCATCGGGA 59.817 55.000 0.00 0.00 35.59 5.14
984 2234 8.762426 GTTTCCGAGAAACATATACTACCAATC 58.238 37.037 18.66 0.00 0.00 2.67
991 2241 7.517604 AGAAACATATACTACCAATCCCCATCT 59.482 37.037 0.00 0.00 0.00 2.90
1189 2442 1.655329 CGCCACTACGAGATCCTCC 59.345 63.158 0.00 0.00 34.06 4.30
1220 2473 1.680522 AAGCTCATCGAGTCCGGCAT 61.681 55.000 0.00 0.00 36.24 4.40
1406 2995 5.636903 AATAAGGTGATCTGTGCCATAGT 57.363 39.130 0.00 0.00 0.00 2.12
1450 3050 3.626028 ACGAAACAGCAAAGGAATGTC 57.374 42.857 0.00 0.00 0.00 3.06
1482 3086 1.229428 TCCTTTGCTGTTTCTGCTCG 58.771 50.000 0.00 0.00 0.00 5.03
1757 3708 2.124122 GAAACCAATGCACACGAAACC 58.876 47.619 0.00 0.00 0.00 3.27
1772 3761 2.919229 CGAAACCAATGCAAAGATCTGC 59.081 45.455 0.00 0.00 42.95 4.26
1968 4026 4.626042 ACATGTGTGTTTGTGTTTGTGTT 58.374 34.783 0.00 0.00 34.01 3.32
1992 4050 8.376942 GTTTGTGTGTGTAATTTTAGGTTTGTG 58.623 33.333 0.00 0.00 0.00 3.33
2036 4094 5.006165 GTCTTGCAGACAGTAGCATGTAATC 59.994 44.000 10.30 0.00 44.45 1.75
2069 4127 6.922407 CCTATACTTAGTTTTTACTCCTCCGC 59.078 42.308 0.00 0.00 0.00 5.54
2086 4144 1.543429 CCGCTCCTCCCCAATATGTTC 60.543 57.143 0.00 0.00 0.00 3.18
2168 4226 8.499403 TGTGCTTGTTACAATATACATGCTTA 57.501 30.769 12.70 3.14 42.55 3.09
2169 4227 8.611757 TGTGCTTGTTACAATATACATGCTTAG 58.388 33.333 12.70 0.00 42.55 2.18
2170 4228 8.826710 GTGCTTGTTACAATATACATGCTTAGA 58.173 33.333 12.70 0.00 42.55 2.10
2171 4229 9.045223 TGCTTGTTACAATATACATGCTTAGAG 57.955 33.333 12.70 0.00 42.55 2.43
2172 4230 8.499162 GCTTGTTACAATATACATGCTTAGAGG 58.501 37.037 0.00 0.00 40.35 3.69
2173 4231 8.902540 TTGTTACAATATACATGCTTAGAGGG 57.097 34.615 0.00 0.00 0.00 4.30
2174 4232 8.029782 TGTTACAATATACATGCTTAGAGGGT 57.970 34.615 0.00 0.00 0.00 4.34
2175 4233 7.931407 TGTTACAATATACATGCTTAGAGGGTG 59.069 37.037 0.00 0.00 0.00 4.61
2176 4234 5.308825 ACAATATACATGCTTAGAGGGTGC 58.691 41.667 0.00 0.00 0.00 5.01
2177 4235 5.072329 ACAATATACATGCTTAGAGGGTGCT 59.928 40.000 0.00 0.00 0.00 4.40
2178 4236 5.832539 ATATACATGCTTAGAGGGTGCTT 57.167 39.130 0.00 0.00 0.00 3.91
2179 4237 2.119801 ACATGCTTAGAGGGTGCTTG 57.880 50.000 0.00 0.00 37.70 4.01
2180 4238 1.340405 ACATGCTTAGAGGGTGCTTGG 60.340 52.381 0.00 0.00 36.56 3.61
2181 4239 1.065199 CATGCTTAGAGGGTGCTTGGA 60.065 52.381 0.00 0.00 0.00 3.53
2182 4240 1.289160 TGCTTAGAGGGTGCTTGGAT 58.711 50.000 0.00 0.00 0.00 3.41
2183 4241 2.477245 TGCTTAGAGGGTGCTTGGATA 58.523 47.619 0.00 0.00 0.00 2.59
2184 4242 2.170607 TGCTTAGAGGGTGCTTGGATAC 59.829 50.000 0.00 0.00 0.00 2.24
2204 4262 8.664211 GGATACAAGGGACTATTTTTAGTCTG 57.336 38.462 11.69 6.32 44.35 3.51
2205 4263 8.483758 GGATACAAGGGACTATTTTTAGTCTGA 58.516 37.037 11.69 0.00 44.35 3.27
2206 4264 9.315525 GATACAAGGGACTATTTTTAGTCTGAC 57.684 37.037 11.69 0.00 44.35 3.51
2207 4265 7.317722 ACAAGGGACTATTTTTAGTCTGACT 57.682 36.000 15.57 15.57 44.35 3.41
2208 4266 8.431910 ACAAGGGACTATTTTTAGTCTGACTA 57.568 34.615 13.34 13.34 44.35 2.59
2209 4267 8.877195 ACAAGGGACTATTTTTAGTCTGACTAA 58.123 33.333 22.80 22.80 44.35 2.24
2210 4268 9.720769 CAAGGGACTATTTTTAGTCTGACTAAA 57.279 33.333 29.65 29.65 42.90 1.85
2229 4287 9.654663 TGACTAAAAATAGTCTCTTTTAGAGGC 57.345 33.333 22.30 14.20 46.94 4.70
2238 4296 6.971527 GTCTCTTTTAGAGGCTAAAGTTCC 57.028 41.667 7.84 0.00 43.38 3.62
2239 4297 6.465084 GTCTCTTTTAGAGGCTAAAGTTCCA 58.535 40.000 7.84 0.00 43.38 3.53
2240 4298 6.935208 GTCTCTTTTAGAGGCTAAAGTTCCAA 59.065 38.462 7.84 0.00 43.38 3.53
2241 4299 7.118535 GTCTCTTTTAGAGGCTAAAGTTCCAAG 59.881 40.741 7.84 0.00 43.38 3.61
2242 4300 5.705905 TCTTTTAGAGGCTAAAGTTCCAAGC 59.294 40.000 7.84 0.00 33.97 4.01
2243 4301 4.634012 TTAGAGGCTAAAGTTCCAAGCA 57.366 40.909 0.00 0.00 38.01 3.91
2244 4302 2.784347 AGAGGCTAAAGTTCCAAGCAC 58.216 47.619 0.00 2.09 38.01 4.40
2245 4303 1.813178 GAGGCTAAAGTTCCAAGCACC 59.187 52.381 0.00 0.00 38.01 5.01
2246 4304 0.888619 GGCTAAAGTTCCAAGCACCC 59.111 55.000 7.02 0.00 38.01 4.61
2247 4305 0.888619 GCTAAAGTTCCAAGCACCCC 59.111 55.000 0.00 0.00 36.26 4.95
2248 4306 1.547901 GCTAAAGTTCCAAGCACCCCT 60.548 52.381 0.00 0.00 36.26 4.79
2249 4307 2.162681 CTAAAGTTCCAAGCACCCCTG 58.837 52.381 0.00 0.00 0.00 4.45
2250 4308 0.555769 AAAGTTCCAAGCACCCCTGA 59.444 50.000 0.00 0.00 0.00 3.86
2251 4309 0.178990 AAGTTCCAAGCACCCCTGAC 60.179 55.000 0.00 0.00 0.00 3.51
2252 4310 1.062488 AGTTCCAAGCACCCCTGACT 61.062 55.000 0.00 0.00 0.00 3.41
2253 4311 0.690762 GTTCCAAGCACCCCTGACTA 59.309 55.000 0.00 0.00 0.00 2.59
2254 4312 1.073284 GTTCCAAGCACCCCTGACTAA 59.927 52.381 0.00 0.00 0.00 2.24
2255 4313 1.440618 TCCAAGCACCCCTGACTAAA 58.559 50.000 0.00 0.00 0.00 1.85
2256 4314 1.351017 TCCAAGCACCCCTGACTAAAG 59.649 52.381 0.00 0.00 0.00 1.85
2257 4315 1.351017 CCAAGCACCCCTGACTAAAGA 59.649 52.381 0.00 0.00 0.00 2.52
2258 4316 2.616510 CCAAGCACCCCTGACTAAAGAG 60.617 54.545 0.00 0.00 0.00 2.85
2259 4317 2.303022 CAAGCACCCCTGACTAAAGAGA 59.697 50.000 0.00 0.00 0.00 3.10
2260 4318 2.183679 AGCACCCCTGACTAAAGAGAG 58.816 52.381 0.00 0.00 0.00 3.20
2261 4319 1.208293 GCACCCCTGACTAAAGAGAGG 59.792 57.143 0.00 0.00 0.00 3.69
2262 4320 1.208293 CACCCCTGACTAAAGAGAGGC 59.792 57.143 0.00 0.00 0.00 4.70
2263 4321 1.079658 ACCCCTGACTAAAGAGAGGCT 59.920 52.381 0.00 0.00 0.00 4.58
2264 4322 2.315155 ACCCCTGACTAAAGAGAGGCTA 59.685 50.000 0.00 0.00 0.00 3.93
2265 4323 2.962421 CCCCTGACTAAAGAGAGGCTAG 59.038 54.545 0.00 0.00 0.00 3.42
2266 4324 2.962421 CCCTGACTAAAGAGAGGCTAGG 59.038 54.545 0.00 0.00 0.00 3.02
2267 4325 3.373220 CCCTGACTAAAGAGAGGCTAGGA 60.373 52.174 0.00 0.00 29.08 2.94
2268 4326 3.634910 CCTGACTAAAGAGAGGCTAGGAC 59.365 52.174 0.00 0.00 29.08 3.85
2269 4327 4.532834 CTGACTAAAGAGAGGCTAGGACT 58.467 47.826 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 592 1.490069 ACCTAGACGGAGGGAGTACTC 59.510 57.143 14.87 14.87 41.36 2.59
84 593 1.212441 CACCTAGACGGAGGGAGTACT 59.788 57.143 0.00 0.00 41.36 2.73
85 594 1.211457 TCACCTAGACGGAGGGAGTAC 59.789 57.143 5.42 0.00 41.36 2.73
86 595 1.489649 CTCACCTAGACGGAGGGAGTA 59.510 57.143 5.42 0.00 41.36 2.59
87 596 0.256464 CTCACCTAGACGGAGGGAGT 59.744 60.000 5.42 0.00 41.36 3.85
88 597 0.256464 ACTCACCTAGACGGAGGGAG 59.744 60.000 12.80 12.80 41.36 4.30
89 598 1.588239 TACTCACCTAGACGGAGGGA 58.412 55.000 5.42 0.16 41.36 4.20
90 599 2.299521 CTTACTCACCTAGACGGAGGG 58.700 57.143 5.42 0.00 41.36 4.30
91 600 2.944349 GACTTACTCACCTAGACGGAGG 59.056 54.545 0.00 0.00 42.89 4.30
92 601 3.607741 TGACTTACTCACCTAGACGGAG 58.392 50.000 0.00 0.00 36.31 4.63
93 602 3.708403 TGACTTACTCACCTAGACGGA 57.292 47.619 0.00 0.00 36.31 4.69
94 603 4.200874 AGATGACTTACTCACCTAGACGG 58.799 47.826 0.00 0.00 39.35 4.79
95 604 5.821516 AAGATGACTTACTCACCTAGACG 57.178 43.478 0.00 0.00 34.28 4.18
96 605 6.829811 ACCTAAGATGACTTACTCACCTAGAC 59.170 42.308 0.00 0.00 37.53 2.59
97 606 6.971340 ACCTAAGATGACTTACTCACCTAGA 58.029 40.000 0.00 0.00 37.53 2.43
98 607 7.122948 ACAACCTAAGATGACTTACTCACCTAG 59.877 40.741 0.00 0.00 37.53 3.02
99 608 6.952358 ACAACCTAAGATGACTTACTCACCTA 59.048 38.462 0.00 0.00 37.53 3.08
100 609 5.780793 ACAACCTAAGATGACTTACTCACCT 59.219 40.000 0.00 0.00 37.53 4.00
101 610 5.869888 CACAACCTAAGATGACTTACTCACC 59.130 44.000 0.00 0.00 37.53 4.02
102 611 5.348997 GCACAACCTAAGATGACTTACTCAC 59.651 44.000 0.00 0.00 37.53 3.51
103 612 5.011635 TGCACAACCTAAGATGACTTACTCA 59.988 40.000 0.00 0.00 37.53 3.41
104 613 5.348997 GTGCACAACCTAAGATGACTTACTC 59.651 44.000 13.17 0.00 37.53 2.59
105 614 5.238583 GTGCACAACCTAAGATGACTTACT 58.761 41.667 13.17 0.00 37.53 2.24
106 615 4.392138 GGTGCACAACCTAAGATGACTTAC 59.608 45.833 20.43 0.00 46.55 2.34
107 616 4.575885 GGTGCACAACCTAAGATGACTTA 58.424 43.478 20.43 0.00 46.55 2.24
108 617 3.412386 GGTGCACAACCTAAGATGACTT 58.588 45.455 20.43 0.00 46.55 3.01
109 618 3.059352 GGTGCACAACCTAAGATGACT 57.941 47.619 20.43 0.00 46.55 3.41
120 629 0.314935 CCTTGGTCATGGTGCACAAC 59.685 55.000 20.43 10.47 0.00 3.32
121 630 0.184692 TCCTTGGTCATGGTGCACAA 59.815 50.000 20.43 8.12 0.00 3.33
122 631 0.250858 CTCCTTGGTCATGGTGCACA 60.251 55.000 20.43 5.24 0.00 4.57
123 632 0.962356 CCTCCTTGGTCATGGTGCAC 60.962 60.000 8.80 8.80 0.00 4.57
124 633 1.133181 TCCTCCTTGGTCATGGTGCA 61.133 55.000 0.00 0.00 37.07 4.57
125 634 0.393537 CTCCTCCTTGGTCATGGTGC 60.394 60.000 0.00 0.00 37.07 5.01
126 635 0.254178 CCTCCTCCTTGGTCATGGTG 59.746 60.000 0.00 1.53 37.07 4.17
127 636 0.916358 CCCTCCTCCTTGGTCATGGT 60.916 60.000 0.00 0.00 37.07 3.55
128 637 1.639635 CCCCTCCTCCTTGGTCATGG 61.640 65.000 0.00 0.00 37.07 3.66
129 638 0.621571 TCCCCTCCTCCTTGGTCATG 60.622 60.000 0.00 0.00 37.07 3.07
130 639 0.121197 TTCCCCTCCTCCTTGGTCAT 59.879 55.000 0.00 0.00 37.07 3.06
131 640 0.104144 TTTCCCCTCCTCCTTGGTCA 60.104 55.000 0.00 0.00 37.07 4.02
132 641 1.073098 TTTTCCCCTCCTCCTTGGTC 58.927 55.000 0.00 0.00 37.07 4.02
133 642 0.778083 GTTTTCCCCTCCTCCTTGGT 59.222 55.000 0.00 0.00 37.07 3.67
134 643 0.322546 CGTTTTCCCCTCCTCCTTGG 60.323 60.000 0.00 0.00 37.10 3.61
135 644 0.690762 TCGTTTTCCCCTCCTCCTTG 59.309 55.000 0.00 0.00 0.00 3.61
136 645 0.984995 CTCGTTTTCCCCTCCTCCTT 59.015 55.000 0.00 0.00 0.00 3.36
137 646 0.116541 TCTCGTTTTCCCCTCCTCCT 59.883 55.000 0.00 0.00 0.00 3.69
138 647 0.537653 CTCTCGTTTTCCCCTCCTCC 59.462 60.000 0.00 0.00 0.00 4.30
139 648 1.205179 GTCTCTCGTTTTCCCCTCCTC 59.795 57.143 0.00 0.00 0.00 3.71
140 649 1.268066 GTCTCTCGTTTTCCCCTCCT 58.732 55.000 0.00 0.00 0.00 3.69
141 650 0.249676 GGTCTCTCGTTTTCCCCTCC 59.750 60.000 0.00 0.00 0.00 4.30
142 651 1.268066 AGGTCTCTCGTTTTCCCCTC 58.732 55.000 0.00 0.00 0.00 4.30
143 652 1.730851 AAGGTCTCTCGTTTTCCCCT 58.269 50.000 0.00 0.00 0.00 4.79
144 653 3.690475 TTAAGGTCTCTCGTTTTCCCC 57.310 47.619 0.00 0.00 0.00 4.81
145 654 4.576879 ACATTAAGGTCTCTCGTTTTCCC 58.423 43.478 0.00 0.00 0.00 3.97
146 655 6.555812 AAACATTAAGGTCTCTCGTTTTCC 57.444 37.500 0.00 0.00 0.00 3.13
148 657 9.893305 CAAATAAACATTAAGGTCTCTCGTTTT 57.107 29.630 0.00 0.00 0.00 2.43
149 658 8.021396 GCAAATAAACATTAAGGTCTCTCGTTT 58.979 33.333 0.00 0.00 0.00 3.60
150 659 7.390718 AGCAAATAAACATTAAGGTCTCTCGTT 59.609 33.333 0.00 0.00 0.00 3.85
151 660 6.879458 AGCAAATAAACATTAAGGTCTCTCGT 59.121 34.615 0.00 0.00 0.00 4.18
152 661 7.308782 AGCAAATAAACATTAAGGTCTCTCG 57.691 36.000 0.00 0.00 0.00 4.04
187 696 4.221262 AGTGGTTAGTTCATTGCATGCAAT 59.779 37.500 34.78 34.78 46.35 3.56
188 697 3.573538 AGTGGTTAGTTCATTGCATGCAA 59.426 39.130 33.57 33.57 40.47 4.08
189 698 3.057386 CAGTGGTTAGTTCATTGCATGCA 60.057 43.478 18.46 18.46 0.00 3.96
190 699 3.504863 CAGTGGTTAGTTCATTGCATGC 58.495 45.455 11.82 11.82 0.00 4.06
191 700 3.504863 GCAGTGGTTAGTTCATTGCATG 58.495 45.455 6.68 0.00 44.01 4.06
192 701 3.855689 GCAGTGGTTAGTTCATTGCAT 57.144 42.857 6.68 0.00 44.01 3.96
194 703 3.057315 ACATGCAGTGGTTAGTTCATTGC 60.057 43.478 0.00 4.92 44.56 3.56
195 704 4.669965 CGACATGCAGTGGTTAGTTCATTG 60.670 45.833 0.00 0.00 0.00 2.82
196 705 3.436704 CGACATGCAGTGGTTAGTTCATT 59.563 43.478 0.00 0.00 0.00 2.57
197 706 3.002791 CGACATGCAGTGGTTAGTTCAT 58.997 45.455 0.00 0.00 0.00 2.57
198 707 2.224185 ACGACATGCAGTGGTTAGTTCA 60.224 45.455 0.00 0.00 35.47 3.18
199 708 2.157668 CACGACATGCAGTGGTTAGTTC 59.842 50.000 11.93 0.00 37.03 3.01
200 709 2.143122 CACGACATGCAGTGGTTAGTT 58.857 47.619 11.93 0.00 37.03 2.24
201 710 1.070134 ACACGACATGCAGTGGTTAGT 59.930 47.619 20.60 1.96 42.25 2.24
202 711 1.795768 ACACGACATGCAGTGGTTAG 58.204 50.000 20.60 1.38 42.25 2.34
203 712 2.248280 AACACGACATGCAGTGGTTA 57.752 45.000 20.60 0.00 42.25 2.85
204 713 1.388547 AAACACGACATGCAGTGGTT 58.611 45.000 20.60 18.36 42.73 3.67
205 714 0.662619 CAAACACGACATGCAGTGGT 59.337 50.000 20.60 14.15 42.25 4.16
206 715 0.040157 CCAAACACGACATGCAGTGG 60.040 55.000 20.60 3.36 42.25 4.00
207 716 0.662619 ACCAAACACGACATGCAGTG 59.337 50.000 16.62 16.62 43.46 3.66
208 717 1.871039 GTACCAAACACGACATGCAGT 59.129 47.619 0.00 0.00 0.00 4.40
209 718 2.143122 AGTACCAAACACGACATGCAG 58.857 47.619 0.00 0.00 0.00 4.41
210 719 2.139917 GAGTACCAAACACGACATGCA 58.860 47.619 0.00 0.00 0.00 3.96
211 720 2.412089 GAGAGTACCAAACACGACATGC 59.588 50.000 0.00 0.00 0.00 4.06
212 721 3.649073 TGAGAGTACCAAACACGACATG 58.351 45.455 0.00 0.00 0.00 3.21
213 722 4.202223 ACTTGAGAGTACCAAACACGACAT 60.202 41.667 0.00 0.00 33.32 3.06
214 723 3.131577 ACTTGAGAGTACCAAACACGACA 59.868 43.478 0.00 0.00 33.32 4.35
215 724 3.714391 ACTTGAGAGTACCAAACACGAC 58.286 45.455 0.00 0.00 33.32 4.34
216 725 3.382227 TGACTTGAGAGTACCAAACACGA 59.618 43.478 0.00 0.00 35.88 4.35
217 726 3.713288 TGACTTGAGAGTACCAAACACG 58.287 45.455 0.00 0.00 35.88 4.49
218 727 7.724305 TTAATGACTTGAGAGTACCAAACAC 57.276 36.000 0.00 0.00 35.88 3.32
219 728 8.740123 TTTTAATGACTTGAGAGTACCAAACA 57.260 30.769 0.00 0.00 35.88 2.83
220 729 7.803659 GCTTTTAATGACTTGAGAGTACCAAAC 59.196 37.037 0.00 0.00 35.88 2.93
221 730 7.500892 TGCTTTTAATGACTTGAGAGTACCAAA 59.499 33.333 0.00 0.00 35.88 3.28
222 731 6.995686 TGCTTTTAATGACTTGAGAGTACCAA 59.004 34.615 0.00 0.00 35.88 3.67
223 732 6.530120 TGCTTTTAATGACTTGAGAGTACCA 58.470 36.000 0.00 0.00 35.88 3.25
224 733 7.467623 CATGCTTTTAATGACTTGAGAGTACC 58.532 38.462 0.00 0.00 35.88 3.34
225 734 6.963805 GCATGCTTTTAATGACTTGAGAGTAC 59.036 38.462 11.37 0.00 35.88 2.73
226 735 6.654582 TGCATGCTTTTAATGACTTGAGAGTA 59.345 34.615 20.33 0.00 35.88 2.59
227 736 5.474532 TGCATGCTTTTAATGACTTGAGAGT 59.525 36.000 20.33 0.00 39.32 3.24
228 737 5.798934 GTGCATGCTTTTAATGACTTGAGAG 59.201 40.000 20.33 0.00 0.00 3.20
229 738 5.241285 TGTGCATGCTTTTAATGACTTGAGA 59.759 36.000 20.33 0.00 0.00 3.27
230 739 5.344128 GTGTGCATGCTTTTAATGACTTGAG 59.656 40.000 20.33 0.00 0.00 3.02
231 740 5.221880 GTGTGCATGCTTTTAATGACTTGA 58.778 37.500 20.33 0.00 0.00 3.02
232 741 4.386652 GGTGTGCATGCTTTTAATGACTTG 59.613 41.667 20.33 0.00 0.00 3.16
233 742 4.559153 GGTGTGCATGCTTTTAATGACTT 58.441 39.130 20.33 0.00 0.00 3.01
234 743 3.056607 GGGTGTGCATGCTTTTAATGACT 60.057 43.478 20.33 0.00 0.00 3.41
235 744 3.056607 AGGGTGTGCATGCTTTTAATGAC 60.057 43.478 20.33 6.41 0.00 3.06
236 745 3.164268 AGGGTGTGCATGCTTTTAATGA 58.836 40.909 20.33 0.00 0.00 2.57
237 746 3.598019 AGGGTGTGCATGCTTTTAATG 57.402 42.857 20.33 0.00 0.00 1.90
238 747 3.577848 TGAAGGGTGTGCATGCTTTTAAT 59.422 39.130 20.33 0.00 0.00 1.40
239 748 2.961741 TGAAGGGTGTGCATGCTTTTAA 59.038 40.909 20.33 0.00 0.00 1.52
240 749 2.591923 TGAAGGGTGTGCATGCTTTTA 58.408 42.857 20.33 0.00 0.00 1.52
241 750 1.412079 TGAAGGGTGTGCATGCTTTT 58.588 45.000 20.33 4.10 0.00 2.27
242 751 1.547372 GATGAAGGGTGTGCATGCTTT 59.453 47.619 20.33 3.74 0.00 3.51
243 752 1.180029 GATGAAGGGTGTGCATGCTT 58.820 50.000 20.33 2.89 0.00 3.91
244 753 0.330604 AGATGAAGGGTGTGCATGCT 59.669 50.000 20.33 0.00 0.00 3.79
245 754 0.737219 GAGATGAAGGGTGTGCATGC 59.263 55.000 11.82 11.82 0.00 4.06
246 755 2.414994 AGAGATGAAGGGTGTGCATG 57.585 50.000 0.00 0.00 0.00 4.06
247 756 3.446442 AAAGAGATGAAGGGTGTGCAT 57.554 42.857 0.00 0.00 0.00 3.96
248 757 2.957402 AAAGAGATGAAGGGTGTGCA 57.043 45.000 0.00 0.00 0.00 4.57
249 758 4.096984 CCAATAAAGAGATGAAGGGTGTGC 59.903 45.833 0.00 0.00 0.00 4.57
250 759 5.256474 ACCAATAAAGAGATGAAGGGTGTG 58.744 41.667 0.00 0.00 0.00 3.82
251 760 5.520748 ACCAATAAAGAGATGAAGGGTGT 57.479 39.130 0.00 0.00 0.00 4.16
252 761 6.840780 AAACCAATAAAGAGATGAAGGGTG 57.159 37.500 0.00 0.00 0.00 4.61
270 779 9.239002 CGTTTTTGTTTCTTGACATATAAACCA 57.761 29.630 0.00 0.00 32.18 3.67
271 780 9.453325 TCGTTTTTGTTTCTTGACATATAAACC 57.547 29.630 0.00 0.00 32.18 3.27
273 782 9.672086 CCTCGTTTTTGTTTCTTGACATATAAA 57.328 29.630 0.00 0.00 0.00 1.40
274 783 8.842280 ACCTCGTTTTTGTTTCTTGACATATAA 58.158 29.630 0.00 0.00 0.00 0.98
275 784 8.385898 ACCTCGTTTTTGTTTCTTGACATATA 57.614 30.769 0.00 0.00 0.00 0.86
276 785 7.272037 ACCTCGTTTTTGTTTCTTGACATAT 57.728 32.000 0.00 0.00 0.00 1.78
277 786 6.687081 ACCTCGTTTTTGTTTCTTGACATA 57.313 33.333 0.00 0.00 0.00 2.29
278 787 5.576447 ACCTCGTTTTTGTTTCTTGACAT 57.424 34.783 0.00 0.00 0.00 3.06
279 788 5.875910 TCTACCTCGTTTTTGTTTCTTGACA 59.124 36.000 0.00 0.00 0.00 3.58
280 789 6.354039 TCTACCTCGTTTTTGTTTCTTGAC 57.646 37.500 0.00 0.00 0.00 3.18
281 790 6.596497 ACTTCTACCTCGTTTTTGTTTCTTGA 59.404 34.615 0.00 0.00 0.00 3.02
282 791 6.782150 ACTTCTACCTCGTTTTTGTTTCTTG 58.218 36.000 0.00 0.00 0.00 3.02
283 792 6.997239 ACTTCTACCTCGTTTTTGTTTCTT 57.003 33.333 0.00 0.00 0.00 2.52
284 793 6.997239 AACTTCTACCTCGTTTTTGTTTCT 57.003 33.333 0.00 0.00 0.00 2.52
285 794 9.166126 CATTAACTTCTACCTCGTTTTTGTTTC 57.834 33.333 0.00 0.00 0.00 2.78
286 795 7.646526 GCATTAACTTCTACCTCGTTTTTGTTT 59.353 33.333 0.00 0.00 0.00 2.83
287 796 7.136772 GCATTAACTTCTACCTCGTTTTTGTT 58.863 34.615 0.00 0.00 0.00 2.83
288 797 6.261381 TGCATTAACTTCTACCTCGTTTTTGT 59.739 34.615 0.00 0.00 0.00 2.83
289 798 6.577427 GTGCATTAACTTCTACCTCGTTTTTG 59.423 38.462 0.00 0.00 0.00 2.44
290 799 6.293790 GGTGCATTAACTTCTACCTCGTTTTT 60.294 38.462 0.00 0.00 0.00 1.94
291 800 5.180680 GGTGCATTAACTTCTACCTCGTTTT 59.819 40.000 0.00 0.00 0.00 2.43
292 801 4.694037 GGTGCATTAACTTCTACCTCGTTT 59.306 41.667 0.00 0.00 0.00 3.60
293 802 4.251268 GGTGCATTAACTTCTACCTCGTT 58.749 43.478 0.00 0.00 0.00 3.85
294 803 3.675228 CGGTGCATTAACTTCTACCTCGT 60.675 47.826 0.00 0.00 0.00 4.18
295 804 2.858344 CGGTGCATTAACTTCTACCTCG 59.142 50.000 0.00 0.00 0.00 4.63
296 805 2.608090 GCGGTGCATTAACTTCTACCTC 59.392 50.000 0.00 0.00 0.00 3.85
297 806 2.629051 GCGGTGCATTAACTTCTACCT 58.371 47.619 0.00 0.00 0.00 3.08
298 807 1.326548 CGCGGTGCATTAACTTCTACC 59.673 52.381 0.00 0.00 0.00 3.18
299 808 1.267383 GCGCGGTGCATTAACTTCTAC 60.267 52.381 8.83 0.00 45.45 2.59
300 809 1.003851 GCGCGGTGCATTAACTTCTA 58.996 50.000 8.83 0.00 45.45 2.10
301 810 1.794222 GCGCGGTGCATTAACTTCT 59.206 52.632 8.83 0.00 45.45 2.85
302 811 4.360101 GCGCGGTGCATTAACTTC 57.640 55.556 8.83 0.00 45.45 3.01
311 820 0.730840 AAAATACTTAGGCGCGGTGC 59.269 50.000 8.83 4.64 45.38 5.01
312 821 1.063469 CCAAAATACTTAGGCGCGGTG 59.937 52.381 8.83 0.00 0.00 4.94
313 822 1.375551 CCAAAATACTTAGGCGCGGT 58.624 50.000 8.83 0.00 0.00 5.68
314 823 0.661020 CCCAAAATACTTAGGCGCGG 59.339 55.000 8.83 0.00 0.00 6.46
315 824 1.658994 TCCCAAAATACTTAGGCGCG 58.341 50.000 0.00 0.00 0.00 6.86
316 825 5.959618 ATAATCCCAAAATACTTAGGCGC 57.040 39.130 0.00 0.00 0.00 6.53
317 826 9.063615 ACTAAATAATCCCAAAATACTTAGGCG 57.936 33.333 0.00 0.00 0.00 5.52
349 858 7.770366 TTGTCTAGGTGTGTAAGTCATCTTA 57.230 36.000 0.00 0.00 35.36 2.10
350 859 6.665992 TTGTCTAGGTGTGTAAGTCATCTT 57.334 37.500 0.00 0.00 37.65 2.40
351 860 6.295349 CCTTTGTCTAGGTGTGTAAGTCATCT 60.295 42.308 0.00 0.00 0.00 2.90
352 861 5.869888 CCTTTGTCTAGGTGTGTAAGTCATC 59.130 44.000 0.00 0.00 0.00 2.92
353 862 5.280011 CCCTTTGTCTAGGTGTGTAAGTCAT 60.280 44.000 0.00 0.00 33.17 3.06
354 863 4.039973 CCCTTTGTCTAGGTGTGTAAGTCA 59.960 45.833 0.00 0.00 33.17 3.41
355 864 4.282703 TCCCTTTGTCTAGGTGTGTAAGTC 59.717 45.833 0.00 0.00 33.17 3.01
356 865 4.228824 TCCCTTTGTCTAGGTGTGTAAGT 58.771 43.478 0.00 0.00 33.17 2.24
357 866 4.283722 ACTCCCTTTGTCTAGGTGTGTAAG 59.716 45.833 0.00 0.00 33.17 2.34
358 867 4.228824 ACTCCCTTTGTCTAGGTGTGTAA 58.771 43.478 0.00 0.00 33.17 2.41
359 868 3.853207 ACTCCCTTTGTCTAGGTGTGTA 58.147 45.455 0.00 0.00 33.17 2.90
360 869 2.690840 ACTCCCTTTGTCTAGGTGTGT 58.309 47.619 0.00 0.00 33.17 3.72
361 870 3.368531 GCTACTCCCTTTGTCTAGGTGTG 60.369 52.174 0.00 0.00 33.17 3.82
362 871 2.832733 GCTACTCCCTTTGTCTAGGTGT 59.167 50.000 0.00 0.00 33.17 4.16
363 872 2.832129 TGCTACTCCCTTTGTCTAGGTG 59.168 50.000 0.00 0.00 33.17 4.00
364 873 3.185880 TGCTACTCCCTTTGTCTAGGT 57.814 47.619 0.00 0.00 33.17 3.08
365 874 4.762289 AATGCTACTCCCTTTGTCTAGG 57.238 45.455 0.00 0.00 34.92 3.02
366 875 4.333926 GCAAATGCTACTCCCTTTGTCTAG 59.666 45.833 0.00 0.00 38.21 2.43
367 876 4.261801 GCAAATGCTACTCCCTTTGTCTA 58.738 43.478 0.00 0.00 38.21 2.59
368 877 3.084786 GCAAATGCTACTCCCTTTGTCT 58.915 45.455 0.00 0.00 38.21 3.41
369 878 2.159517 CGCAAATGCTACTCCCTTTGTC 60.160 50.000 3.63 0.00 39.32 3.18
370 879 1.812571 CGCAAATGCTACTCCCTTTGT 59.187 47.619 3.63 0.00 39.32 2.83
371 880 2.083774 TCGCAAATGCTACTCCCTTTG 58.916 47.619 3.63 0.00 39.32 2.77
372 881 2.489938 TCGCAAATGCTACTCCCTTT 57.510 45.000 3.63 0.00 39.32 3.11
373 882 2.565841 GATCGCAAATGCTACTCCCTT 58.434 47.619 3.63 0.00 39.32 3.95
374 883 1.202698 GGATCGCAAATGCTACTCCCT 60.203 52.381 3.63 0.00 39.32 4.20
375 884 1.202698 AGGATCGCAAATGCTACTCCC 60.203 52.381 3.63 0.00 39.32 4.30
415 924 1.086696 ATACGTGCATGCAGTGGTTC 58.913 50.000 23.41 7.18 0.00 3.62
421 930 2.096069 GGCTATCAATACGTGCATGCAG 60.096 50.000 23.41 17.33 0.00 4.41
617 1298 4.252073 CAGCCTGCAGTGAGATAATATCC 58.748 47.826 13.81 0.00 0.00 2.59
622 1303 3.465990 GCAGCCTGCAGTGAGATAA 57.534 52.632 12.82 0.00 44.26 1.75
672 1353 1.084370 CGGACAAAGGAGCACGATCC 61.084 60.000 0.00 0.00 39.89 3.36
703 1384 3.324117 GTGCTGCGATATGACATCTCAT 58.676 45.455 0.00 0.00 40.47 2.90
707 1388 0.786581 CGGTGCTGCGATATGACATC 59.213 55.000 0.00 0.00 0.00 3.06
944 2184 0.459759 GGAAACCGAGCTCCGTTAGG 60.460 60.000 18.77 11.37 36.31 2.69
974 2214 4.748701 GACCTAGATGGGGATTGGTAGTA 58.251 47.826 0.00 0.00 41.11 1.82
975 2215 3.588569 GACCTAGATGGGGATTGGTAGT 58.411 50.000 0.00 0.00 41.11 2.73
976 2216 2.563179 CGACCTAGATGGGGATTGGTAG 59.437 54.545 0.00 0.00 41.11 3.18
977 2217 2.178325 TCGACCTAGATGGGGATTGGTA 59.822 50.000 0.00 0.00 41.11 3.25
978 2218 1.062428 TCGACCTAGATGGGGATTGGT 60.062 52.381 0.00 0.00 41.11 3.67
991 2241 3.687125 ACACAGAAGACATCTCGACCTA 58.313 45.455 0.00 0.00 35.73 3.08
1189 2442 2.200067 GATGAGCTTGATGTCGTCCAG 58.800 52.381 0.00 0.00 0.00 3.86
1220 2473 0.971386 GTACTTGGGGAACGAGACCA 59.029 55.000 0.00 0.00 34.46 4.02
1328 2598 2.791655 AGGATCTGACACGTCACACTA 58.208 47.619 0.00 0.00 35.46 2.74
1336 2606 3.443037 CTTTGAGCTAGGATCTGACACG 58.557 50.000 0.00 0.00 0.00 4.49
1372 2944 8.321353 ACAGATCACCTTATTATGACAAGTGAA 58.679 33.333 0.00 0.00 0.00 3.18
1406 2995 3.003897 GTCAATTGGCAACGTCAACCTAA 59.996 43.478 4.85 0.00 42.51 2.69
1450 3050 4.022589 ACAGCAAAGGAATTGACATCACTG 60.023 41.667 0.00 0.00 41.85 3.66
1482 3086 4.874966 AGAGTAATTCTTGCAGTGCATCTC 59.125 41.667 20.50 15.95 38.76 2.75
1652 3299 7.342026 CCTATAGTTTTGCCCCTAAAGAATGTT 59.658 37.037 0.00 0.00 0.00 2.71
1757 3708 2.268298 GGCAAGCAGATCTTTGCATTG 58.732 47.619 25.84 18.05 46.47 2.82
1772 3761 1.885887 TGAAATTGAGAACCGGGCAAG 59.114 47.619 6.32 0.00 0.00 4.01
1956 4014 4.046938 ACACACACAAACACAAACACAA 57.953 36.364 0.00 0.00 0.00 3.33
1962 4020 7.603651 ACCTAAAATTACACACACAAACACAA 58.396 30.769 0.00 0.00 0.00 3.33
1968 4026 7.827701 TCACAAACCTAAAATTACACACACAA 58.172 30.769 0.00 0.00 0.00 3.33
1992 4050 1.063174 CTAGGCGCACTTGATTTGCTC 59.937 52.381 10.83 0.00 37.87 4.26
2069 4127 3.048600 TCCAGAACATATTGGGGAGGAG 58.951 50.000 0.00 0.00 35.13 3.69
2168 4226 1.561542 CCTTGTATCCAAGCACCCTCT 59.438 52.381 0.00 0.00 45.57 3.69
2169 4227 1.408822 CCCTTGTATCCAAGCACCCTC 60.409 57.143 0.00 0.00 45.57 4.30
2170 4228 0.625849 CCCTTGTATCCAAGCACCCT 59.374 55.000 0.00 0.00 45.57 4.34
2171 4229 0.623723 TCCCTTGTATCCAAGCACCC 59.376 55.000 0.00 0.00 45.57 4.61
2172 4230 1.282157 AGTCCCTTGTATCCAAGCACC 59.718 52.381 0.00 0.00 45.57 5.01
2173 4231 2.789409 AGTCCCTTGTATCCAAGCAC 57.211 50.000 0.00 0.00 45.57 4.40
2174 4232 5.450818 AAATAGTCCCTTGTATCCAAGCA 57.549 39.130 0.00 0.00 45.57 3.91
2175 4233 6.775594 AAAAATAGTCCCTTGTATCCAAGC 57.224 37.500 0.00 0.00 45.57 4.01
2176 4234 9.110502 GACTAAAAATAGTCCCTTGTATCCAAG 57.889 37.037 4.96 0.00 40.86 3.61
2177 4235 8.832735 AGACTAAAAATAGTCCCTTGTATCCAA 58.167 33.333 11.35 0.00 45.66 3.53
2178 4236 8.265055 CAGACTAAAAATAGTCCCTTGTATCCA 58.735 37.037 11.35 0.00 45.66 3.41
2179 4237 8.483758 TCAGACTAAAAATAGTCCCTTGTATCC 58.516 37.037 11.35 0.00 45.66 2.59
2180 4238 9.315525 GTCAGACTAAAAATAGTCCCTTGTATC 57.684 37.037 11.35 0.00 45.66 2.24
2181 4239 9.047947 AGTCAGACTAAAAATAGTCCCTTGTAT 57.952 33.333 0.00 0.00 45.66 2.29
2182 4240 8.431910 AGTCAGACTAAAAATAGTCCCTTGTA 57.568 34.615 0.00 0.00 45.66 2.41
2183 4241 7.317722 AGTCAGACTAAAAATAGTCCCTTGT 57.682 36.000 0.00 0.00 45.66 3.16
2184 4242 9.720769 TTTAGTCAGACTAAAAATAGTCCCTTG 57.279 33.333 26.93 5.29 44.84 3.61
2203 4261 9.654663 GCCTCTAAAAGAGACTATTTTTAGTCA 57.345 33.333 12.70 4.01 45.07 3.41
2204 4262 9.878667 AGCCTCTAAAAGAGACTATTTTTAGTC 57.121 33.333 12.70 5.24 45.07 2.59
2211 4269 9.878667 GAACTTTAGCCTCTAAAAGAGACTATT 57.121 33.333 5.50 0.00 45.07 1.73
2212 4270 8.479689 GGAACTTTAGCCTCTAAAAGAGACTAT 58.520 37.037 5.50 0.00 45.07 2.12
2213 4271 7.453752 TGGAACTTTAGCCTCTAAAAGAGACTA 59.546 37.037 5.50 0.91 45.07 2.59
2214 4272 6.270231 TGGAACTTTAGCCTCTAAAAGAGACT 59.730 38.462 5.50 1.89 45.07 3.24
2215 4273 6.465084 TGGAACTTTAGCCTCTAAAAGAGAC 58.535 40.000 5.50 0.00 45.07 3.36
2216 4274 6.681729 TGGAACTTTAGCCTCTAAAAGAGA 57.318 37.500 5.50 0.00 45.07 3.10
2217 4275 6.128145 GCTTGGAACTTTAGCCTCTAAAAGAG 60.128 42.308 2.08 0.00 41.96 2.85
2218 4276 5.705905 GCTTGGAACTTTAGCCTCTAAAAGA 59.294 40.000 2.08 0.00 36.43 2.52
2219 4277 5.473504 TGCTTGGAACTTTAGCCTCTAAAAG 59.526 40.000 0.00 0.00 38.41 2.27
2220 4278 5.240844 GTGCTTGGAACTTTAGCCTCTAAAA 59.759 40.000 0.00 0.00 34.03 1.52
2221 4279 4.760204 GTGCTTGGAACTTTAGCCTCTAAA 59.240 41.667 0.00 0.00 34.03 1.85
2222 4280 4.324267 GTGCTTGGAACTTTAGCCTCTAA 58.676 43.478 0.00 0.00 34.03 2.10
2223 4281 3.307480 GGTGCTTGGAACTTTAGCCTCTA 60.307 47.826 0.00 0.00 34.03 2.43
2224 4282 2.553247 GGTGCTTGGAACTTTAGCCTCT 60.553 50.000 0.00 0.00 34.03 3.69
2225 4283 1.813178 GGTGCTTGGAACTTTAGCCTC 59.187 52.381 0.00 0.00 34.03 4.70
2226 4284 1.547901 GGGTGCTTGGAACTTTAGCCT 60.548 52.381 0.00 0.00 34.03 4.58
2227 4285 0.888619 GGGTGCTTGGAACTTTAGCC 59.111 55.000 0.00 0.00 34.03 3.93
2228 4286 0.888619 GGGGTGCTTGGAACTTTAGC 59.111 55.000 0.00 0.00 35.50 3.09
2229 4287 2.162681 CAGGGGTGCTTGGAACTTTAG 58.837 52.381 0.00 0.00 0.00 1.85
2230 4288 1.777878 TCAGGGGTGCTTGGAACTTTA 59.222 47.619 0.00 0.00 0.00 1.85
2231 4289 0.555769 TCAGGGGTGCTTGGAACTTT 59.444 50.000 0.00 0.00 0.00 2.66
2232 4290 0.178990 GTCAGGGGTGCTTGGAACTT 60.179 55.000 0.00 0.00 0.00 2.66
2233 4291 1.062488 AGTCAGGGGTGCTTGGAACT 61.062 55.000 0.00 0.00 0.00 3.01
2234 4292 0.690762 TAGTCAGGGGTGCTTGGAAC 59.309 55.000 0.00 0.00 0.00 3.62
2235 4293 1.440618 TTAGTCAGGGGTGCTTGGAA 58.559 50.000 0.00 0.00 0.00 3.53
2236 4294 1.351017 CTTTAGTCAGGGGTGCTTGGA 59.649 52.381 0.00 0.00 0.00 3.53
2237 4295 1.351017 TCTTTAGTCAGGGGTGCTTGG 59.649 52.381 0.00 0.00 0.00 3.61
2238 4296 2.303022 TCTCTTTAGTCAGGGGTGCTTG 59.697 50.000 0.00 0.00 0.00 4.01
2239 4297 2.569404 CTCTCTTTAGTCAGGGGTGCTT 59.431 50.000 0.00 0.00 0.00 3.91
2240 4298 2.183679 CTCTCTTTAGTCAGGGGTGCT 58.816 52.381 0.00 0.00 0.00 4.40
2241 4299 1.208293 CCTCTCTTTAGTCAGGGGTGC 59.792 57.143 0.00 0.00 0.00 5.01
2242 4300 1.208293 GCCTCTCTTTAGTCAGGGGTG 59.792 57.143 0.00 0.00 0.00 4.61
2243 4301 1.079658 AGCCTCTCTTTAGTCAGGGGT 59.920 52.381 0.00 0.00 0.00 4.95
2244 4302 1.872773 AGCCTCTCTTTAGTCAGGGG 58.127 55.000 0.00 0.00 0.00 4.79
2245 4303 2.962421 CCTAGCCTCTCTTTAGTCAGGG 59.038 54.545 0.00 0.00 0.00 4.45
2246 4304 3.634910 GTCCTAGCCTCTCTTTAGTCAGG 59.365 52.174 0.00 0.00 0.00 3.86
2247 4305 4.532834 AGTCCTAGCCTCTCTTTAGTCAG 58.467 47.826 0.00 0.00 0.00 3.51
2248 4306 4.594675 AGTCCTAGCCTCTCTTTAGTCA 57.405 45.455 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.