Multiple sequence alignment - TraesCS3B01G269000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G269000 chr3B 100.000 2802 0 0 1 2802 433531347 433534148 0.000000e+00 5175
1 TraesCS3B01G269000 chr3A 92.092 2491 53 34 1 2444 452931918 452934311 0.000000e+00 3376
2 TraesCS3B01G269000 chr3A 90.909 253 16 4 2552 2802 452940860 452941107 1.610000e-87 333
3 TraesCS3B01G269000 chr3D 90.702 2237 57 57 1 2165 334153518 334155675 0.000000e+00 2839
4 TraesCS3B01G269000 chr3D 92.877 702 21 9 2103 2802 334155723 334156397 0.000000e+00 992


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G269000 chr3B 433531347 433534148 2801 False 5175.0 5175 100.0000 1 2802 1 chr3B.!!$F1 2801
1 TraesCS3B01G269000 chr3A 452931918 452934311 2393 False 3376.0 3376 92.0920 1 2444 1 chr3A.!!$F1 2443
2 TraesCS3B01G269000 chr3D 334153518 334156397 2879 False 1915.5 2839 91.7895 1 2802 2 chr3D.!!$F1 2801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
874 892 0.033405 TTGGTTTGGTTTCGACCCCA 60.033 50.0 0.0 0.0 32.39 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2774 2980 1.479323 CCCCTTGATGTCATTGCCAAG 59.521 52.381 5.98 5.98 36.64 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
271 280 1.684049 AACCGGCTCAGAGGAGGAG 60.684 63.158 0.00 0.00 41.67 3.69
430 439 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
431 440 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
432 441 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
433 442 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
434 443 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
435 444 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
436 445 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
437 446 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
481 490 0.821711 CGTGGCCTTCCTTTTGACCA 60.822 55.000 3.32 0.00 0.00 4.02
544 553 0.388659 GGCGCATGAGAGAGACATCT 59.611 55.000 10.83 0.00 38.98 2.90
553 562 1.004862 AGAGAGACATCTGGACGGACA 59.995 52.381 0.00 0.00 35.30 4.02
554 563 2.028130 GAGAGACATCTGGACGGACAT 58.972 52.381 0.00 0.00 35.30 3.06
555 564 2.028130 AGAGACATCTGGACGGACATC 58.972 52.381 0.00 0.00 33.30 3.06
556 565 1.067821 GAGACATCTGGACGGACATCC 59.932 57.143 0.00 0.00 39.45 3.51
749 767 1.029681 CATCCATCCACATGTGCCAG 58.970 55.000 20.81 10.98 0.00 4.85
762 780 1.069090 TGCCAGACACCTCAACGAC 59.931 57.895 0.00 0.00 0.00 4.34
837 855 0.321653 CAGCAACAGACACCCCCTAC 60.322 60.000 0.00 0.00 0.00 3.18
838 856 1.375523 GCAACAGACACCCCCTACG 60.376 63.158 0.00 0.00 0.00 3.51
840 858 0.037605 CAACAGACACCCCCTACGTC 60.038 60.000 0.00 0.00 0.00 4.34
841 859 1.530013 AACAGACACCCCCTACGTCG 61.530 60.000 0.00 0.00 34.80 5.12
842 860 1.975407 CAGACACCCCCTACGTCGT 60.975 63.158 2.21 2.21 34.80 4.34
843 861 1.676967 AGACACCCCCTACGTCGTC 60.677 63.158 0.00 0.00 34.80 4.20
844 862 1.676967 GACACCCCCTACGTCGTCT 60.677 63.158 0.00 0.00 0.00 4.18
845 863 1.228675 ACACCCCCTACGTCGTCTT 60.229 57.895 0.00 0.00 0.00 3.01
847 865 0.389426 CACCCCCTACGTCGTCTTTG 60.389 60.000 0.00 0.00 0.00 2.77
848 866 1.217244 CCCCCTACGTCGTCTTTGG 59.783 63.158 0.00 0.31 0.00 3.28
874 892 0.033405 TTGGTTTGGTTTCGACCCCA 60.033 50.000 0.00 0.00 32.39 4.96
886 904 1.513622 GACCCCAGTCTCGAAGCTC 59.486 63.158 0.00 0.00 40.10 4.09
887 905 0.968393 GACCCCAGTCTCGAAGCTCT 60.968 60.000 0.00 0.00 40.10 4.09
888 906 0.968393 ACCCCAGTCTCGAAGCTCTC 60.968 60.000 0.00 0.00 0.00 3.20
889 907 1.671901 CCCCAGTCTCGAAGCTCTCC 61.672 65.000 0.00 0.00 0.00 3.71
910 928 7.316841 TCTCCCTCCCTCTTCATATTAATCTT 58.683 38.462 0.00 0.00 0.00 2.40
1350 1397 2.685380 CTCTGGAGGAACGGGCCT 60.685 66.667 0.84 0.00 42.17 5.19
1400 1447 7.201274 CGTGCGTAAACTGATGATCATATACTC 60.201 40.741 8.54 0.00 0.00 2.59
1401 1448 7.810282 GTGCGTAAACTGATGATCATATACTCT 59.190 37.037 8.54 0.00 0.00 3.24
1425 1472 3.326578 ATGGCCACGTACCCAGCA 61.327 61.111 8.16 0.00 34.01 4.41
1445 1517 3.374058 GCAACACTGCCTTACGAACATAT 59.626 43.478 0.00 0.00 43.26 1.78
1449 1521 5.914033 ACACTGCCTTACGAACATATATGT 58.086 37.500 12.75 12.75 44.20 2.29
1451 1523 6.921857 ACACTGCCTTACGAACATATATGTAC 59.078 38.462 18.56 2.84 40.80 2.90
1466 1538 8.043113 ACATATATGTACATCCATGCTAACTGG 58.957 37.037 16.85 4.62 39.68 4.00
1470 1542 3.272574 ACATCCATGCTAACTGGTCAG 57.727 47.619 0.00 0.00 35.19 3.51
1472 1544 3.774766 ACATCCATGCTAACTGGTCAGTA 59.225 43.478 3.87 0.00 41.58 2.74
1753 1834 4.451150 GTCATGCCCTCGTCGCCA 62.451 66.667 0.00 0.00 0.00 5.69
1809 1890 4.448720 TCCAGTACTACTAGCCATAGCA 57.551 45.455 0.00 0.00 43.56 3.49
1874 1955 6.301486 TCCTTCTCCCCTTTTAAGTAACAAC 58.699 40.000 0.00 0.00 0.00 3.32
1875 1956 6.066032 CCTTCTCCCCTTTTAAGTAACAACA 58.934 40.000 0.00 0.00 0.00 3.33
1876 1957 6.548251 CCTTCTCCCCTTTTAAGTAACAACAA 59.452 38.462 0.00 0.00 0.00 2.83
1880 1961 8.002459 TCTCCCCTTTTAAGTAACAACAAAGAT 58.998 33.333 0.00 0.00 0.00 2.40
1974 2055 7.254522 GCATGAAAGTTGAAGCTGAAATGAAAA 60.255 33.333 0.00 0.00 0.00 2.29
2034 2116 1.939934 TGTTTCCTCTTGTTGCGTGAG 59.060 47.619 0.00 0.00 0.00 3.51
2056 2138 8.845227 GTGAGGATTCTTTCTCTTTCTTTTCTT 58.155 33.333 0.00 0.00 0.00 2.52
2057 2139 9.413734 TGAGGATTCTTTCTCTTTCTTTTCTTT 57.586 29.630 0.00 0.00 0.00 2.52
2073 2155 4.552166 TTCTTTTCTTTTGTGAGCCGAG 57.448 40.909 0.00 0.00 0.00 4.63
2095 2177 6.274157 AGGTTTGCATATACTCCGAGATAG 57.726 41.667 1.33 0.00 0.00 2.08
2112 2309 6.154877 CCGAGATAGGAGTATCTAGTAGACCA 59.845 46.154 0.85 0.00 44.70 4.02
2266 2463 4.939368 CGGTGCCCCAACGGTCAA 62.939 66.667 0.00 0.00 41.23 3.18
2267 2464 2.282887 GGTGCCCCAACGGTCAAT 60.283 61.111 0.00 0.00 0.00 2.57
2268 2465 2.340328 GGTGCCCCAACGGTCAATC 61.340 63.158 0.00 0.00 0.00 2.67
2269 2466 1.602323 GTGCCCCAACGGTCAATCA 60.602 57.895 0.00 0.00 0.00 2.57
2270 2467 0.965363 GTGCCCCAACGGTCAATCAT 60.965 55.000 0.00 0.00 0.00 2.45
2271 2468 0.679640 TGCCCCAACGGTCAATCATC 60.680 55.000 0.00 0.00 0.00 2.92
2272 2469 1.714899 GCCCCAACGGTCAATCATCG 61.715 60.000 0.00 0.00 0.00 3.84
2319 2524 2.202703 GTACGTACAGGCCCTGCG 60.203 66.667 20.67 10.06 34.37 5.18
2320 2525 2.677524 TACGTACAGGCCCTGCGT 60.678 61.111 18.28 18.28 35.27 5.24
2321 2526 2.277591 TACGTACAGGCCCTGCGTT 61.278 57.895 19.21 0.00 33.70 4.84
2322 2527 1.818959 TACGTACAGGCCCTGCGTTT 61.819 55.000 19.21 0.00 33.70 3.60
2323 2528 1.964373 CGTACAGGCCCTGCGTTTT 60.964 57.895 11.63 0.00 34.37 2.43
2324 2529 1.873863 GTACAGGCCCTGCGTTTTC 59.126 57.895 11.63 0.00 34.37 2.29
2360 2565 2.215196 GAGAGTGAGGCTCCGTACTAG 58.785 57.143 12.86 0.00 45.21 2.57
2361 2566 1.560611 AGAGTGAGGCTCCGTACTAGT 59.439 52.381 12.86 0.00 45.21 2.57
2362 2567 2.770802 AGAGTGAGGCTCCGTACTAGTA 59.229 50.000 12.86 0.00 45.21 1.82
2390 2595 1.941734 CTCGCTACGCTGCTACTGC 60.942 63.158 0.00 0.00 40.20 4.40
2411 2617 4.161942 TGCCAGCATAAATTAGCATTGGTT 59.838 37.500 0.00 0.00 31.00 3.67
2412 2618 5.118286 GCCAGCATAAATTAGCATTGGTTT 58.882 37.500 0.00 0.00 31.00 3.27
2413 2619 6.127225 TGCCAGCATAAATTAGCATTGGTTTA 60.127 34.615 0.00 0.00 31.00 2.01
2414 2620 6.421801 GCCAGCATAAATTAGCATTGGTTTAG 59.578 38.462 0.00 0.00 31.00 1.85
2415 2621 7.684187 GCCAGCATAAATTAGCATTGGTTTAGA 60.684 37.037 0.00 0.00 31.00 2.10
2416 2622 7.649306 CCAGCATAAATTAGCATTGGTTTAGAC 59.351 37.037 0.00 0.00 0.00 2.59
2417 2623 8.408601 CAGCATAAATTAGCATTGGTTTAGACT 58.591 33.333 0.00 0.00 0.00 3.24
2470 2676 2.413634 CCTAAAATCGTTTGGACCGTGC 60.414 50.000 0.00 0.00 0.00 5.34
2471 2677 1.314730 AAAATCGTTTGGACCGTGCT 58.685 45.000 0.00 0.00 0.00 4.40
2472 2678 1.314730 AAATCGTTTGGACCGTGCTT 58.685 45.000 0.00 0.00 0.00 3.91
2473 2679 0.872388 AATCGTTTGGACCGTGCTTC 59.128 50.000 0.00 0.00 0.00 3.86
2577 2783 2.900273 GGTCAGCGTCTATGCCCA 59.100 61.111 0.00 0.00 34.65 5.36
2586 2792 1.860950 CGTCTATGCCCATTCTTCACG 59.139 52.381 0.00 0.00 0.00 4.35
2587 2793 2.738643 CGTCTATGCCCATTCTTCACGT 60.739 50.000 0.00 0.00 0.00 4.49
2588 2794 3.490249 CGTCTATGCCCATTCTTCACGTA 60.490 47.826 0.00 0.00 0.00 3.57
2589 2795 4.439057 GTCTATGCCCATTCTTCACGTAA 58.561 43.478 0.00 0.00 0.00 3.18
2590 2796 4.873827 GTCTATGCCCATTCTTCACGTAAA 59.126 41.667 0.00 0.00 0.00 2.01
2591 2797 5.006746 GTCTATGCCCATTCTTCACGTAAAG 59.993 44.000 0.00 0.00 0.00 1.85
2592 2798 3.410631 TGCCCATTCTTCACGTAAAGA 57.589 42.857 0.00 0.00 33.50 2.52
2661 2867 4.747540 TTCACATTCCGTTCAACATCAG 57.252 40.909 0.00 0.00 0.00 2.90
2690 2896 7.977853 AGACATTGCAATTTTCATATCTGGAAC 59.022 33.333 9.83 0.00 0.00 3.62
2701 2907 4.943705 TCATATCTGGAACTTGCTTTCACC 59.056 41.667 0.00 0.00 0.00 4.02
2718 2924 9.679661 TGCTTTCACCATAAGATAACTGAAATA 57.320 29.630 0.00 0.00 0.00 1.40
2772 2978 1.890876 ATTATTCGCCGGCTTATGCA 58.109 45.000 26.68 9.05 41.91 3.96
2774 2980 0.941542 TATTCGCCGGCTTATGCAAC 59.058 50.000 26.68 0.00 41.91 4.17
2790 2996 2.364647 TGCAACTTGGCAATGACATCAA 59.635 40.909 0.00 0.00 41.65 2.57
2791 2997 2.991190 GCAACTTGGCAATGACATCAAG 59.009 45.455 0.00 11.79 41.46 3.02
2792 2998 3.581755 CAACTTGGCAATGACATCAAGG 58.418 45.455 15.82 1.04 40.41 3.61
2795 3001 0.703488 TGGCAATGACATCAAGGGGA 59.297 50.000 0.00 0.00 0.00 4.81
2796 3002 1.288633 TGGCAATGACATCAAGGGGAT 59.711 47.619 0.00 0.00 36.39 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
271 280 1.967343 ATCTGTCCCTCCCTCCTCCC 61.967 65.000 0.00 0.00 0.00 4.30
430 439 2.115052 GTCCCCCATGCACACACA 59.885 61.111 0.00 0.00 0.00 3.72
431 440 1.973281 CAGTCCCCCATGCACACAC 60.973 63.158 0.00 0.00 0.00 3.82
432 441 2.005606 AACAGTCCCCCATGCACACA 62.006 55.000 0.00 0.00 0.00 3.72
433 442 1.228552 AACAGTCCCCCATGCACAC 60.229 57.895 0.00 0.00 0.00 3.82
434 443 1.074775 GAACAGTCCCCCATGCACA 59.925 57.895 0.00 0.00 0.00 4.57
435 444 1.678970 GGAACAGTCCCCCATGCAC 60.679 63.158 0.00 0.00 38.08 4.57
436 445 2.763215 GGAACAGTCCCCCATGCA 59.237 61.111 0.00 0.00 38.08 3.96
481 490 0.883833 CAAAGAAGGATGTGGCGCTT 59.116 50.000 7.64 0.00 0.00 4.68
749 767 0.600255 CTGTGGGTCGTTGAGGTGTC 60.600 60.000 0.00 0.00 0.00 3.67
837 855 2.446282 CAAACCAAACCAAAGACGACG 58.554 47.619 0.00 0.00 0.00 5.12
838 856 2.164827 ACCAAACCAAACCAAAGACGAC 59.835 45.455 0.00 0.00 0.00 4.34
840 858 2.951457 ACCAAACCAAACCAAAGACG 57.049 45.000 0.00 0.00 0.00 4.18
841 859 3.687212 CCAAACCAAACCAAACCAAAGAC 59.313 43.478 0.00 0.00 0.00 3.01
842 860 3.328050 ACCAAACCAAACCAAACCAAAGA 59.672 39.130 0.00 0.00 0.00 2.52
843 861 3.680490 ACCAAACCAAACCAAACCAAAG 58.320 40.909 0.00 0.00 0.00 2.77
844 862 3.790089 ACCAAACCAAACCAAACCAAA 57.210 38.095 0.00 0.00 0.00 3.28
845 863 3.790089 AACCAAACCAAACCAAACCAA 57.210 38.095 0.00 0.00 0.00 3.67
847 865 2.673862 CGAAACCAAACCAAACCAAACC 59.326 45.455 0.00 0.00 0.00 3.27
848 866 3.368539 GTCGAAACCAAACCAAACCAAAC 59.631 43.478 0.00 0.00 0.00 2.93
874 892 0.395173 GGAGGGAGAGCTTCGAGACT 60.395 60.000 0.00 0.00 0.00 3.24
886 904 7.310983 GGAAGATTAATATGAAGAGGGAGGGAG 60.311 44.444 0.00 0.00 0.00 4.30
887 905 6.502158 GGAAGATTAATATGAAGAGGGAGGGA 59.498 42.308 0.00 0.00 0.00 4.20
888 906 6.296720 GGGAAGATTAATATGAAGAGGGAGGG 60.297 46.154 0.00 0.00 0.00 4.30
889 907 6.296720 GGGGAAGATTAATATGAAGAGGGAGG 60.297 46.154 0.00 0.00 0.00 4.30
910 928 2.306715 TAGCTGCTGGTATCGGGGGA 62.307 60.000 13.43 0.00 0.00 4.81
1425 1472 6.346096 ACATATATGTTCGTAAGGCAGTGTT 58.654 36.000 12.75 0.00 37.90 3.32
1445 1517 5.365314 TGACCAGTTAGCATGGATGTACATA 59.635 40.000 8.71 0.00 40.51 2.29
1449 1521 3.774766 ACTGACCAGTTAGCATGGATGTA 59.225 43.478 0.00 0.00 40.51 2.29
1451 1523 3.272574 ACTGACCAGTTAGCATGGATG 57.727 47.619 0.00 0.00 40.51 3.51
1466 1538 4.206698 GCACAGATGATGCAATACTGAC 57.793 45.455 16.31 7.57 42.88 3.51
1568 1640 4.776322 CCCGCTGTCCGATGCCAA 62.776 66.667 0.00 0.00 40.02 4.52
1874 1955 4.940046 AGAAGTACCACAGCATCATCTTTG 59.060 41.667 0.00 0.00 0.00 2.77
1875 1956 5.171339 AGAAGTACCACAGCATCATCTTT 57.829 39.130 0.00 0.00 0.00 2.52
1876 1957 4.833478 AGAAGTACCACAGCATCATCTT 57.167 40.909 0.00 0.00 0.00 2.40
1880 1961 5.129634 TCAAAAAGAAGTACCACAGCATCA 58.870 37.500 0.00 0.00 0.00 3.07
2056 2138 2.341846 ACCTCGGCTCACAAAAGAAA 57.658 45.000 0.00 0.00 0.00 2.52
2057 2139 2.341846 AACCTCGGCTCACAAAAGAA 57.658 45.000 0.00 0.00 0.00 2.52
2058 2140 1.946768 CAAACCTCGGCTCACAAAAGA 59.053 47.619 0.00 0.00 0.00 2.52
2059 2141 1.600413 GCAAACCTCGGCTCACAAAAG 60.600 52.381 0.00 0.00 0.00 2.27
2073 2155 5.185249 TCCTATCTCGGAGTATATGCAAACC 59.815 44.000 4.69 0.00 0.00 3.27
2095 2177 7.005296 TGGAAAGATGGTCTACTAGATACTCC 58.995 42.308 0.00 0.00 0.00 3.85
2098 2180 8.410673 TCATGGAAAGATGGTCTACTAGATAC 57.589 38.462 0.00 0.00 0.00 2.24
2099 2181 9.029368 CATCATGGAAAGATGGTCTACTAGATA 57.971 37.037 0.00 0.00 39.30 1.98
2100 2182 7.905265 CATCATGGAAAGATGGTCTACTAGAT 58.095 38.462 0.00 0.00 39.30 1.98
2265 2462 6.225981 TGATATATGCAGCTACCGATGATT 57.774 37.500 0.00 0.00 0.00 2.57
2266 2463 5.221402 CCTGATATATGCAGCTACCGATGAT 60.221 44.000 0.00 0.00 32.06 2.45
2267 2464 4.098501 CCTGATATATGCAGCTACCGATGA 59.901 45.833 0.00 0.00 32.06 2.92
2268 2465 4.366586 CCTGATATATGCAGCTACCGATG 58.633 47.826 0.00 0.00 32.06 3.84
2269 2466 3.386078 CCCTGATATATGCAGCTACCGAT 59.614 47.826 0.00 0.00 32.06 4.18
2270 2467 2.760650 CCCTGATATATGCAGCTACCGA 59.239 50.000 0.00 0.00 32.06 4.69
2271 2468 2.159043 CCCCTGATATATGCAGCTACCG 60.159 54.545 0.00 0.00 32.06 4.02
2272 2469 2.420687 GCCCCTGATATATGCAGCTACC 60.421 54.545 0.00 0.00 32.06 3.18
2319 2524 7.608376 ACTCTCAGAAGCCCTATAAAAGAAAAC 59.392 37.037 0.00 0.00 0.00 2.43
2320 2525 7.607991 CACTCTCAGAAGCCCTATAAAAGAAAA 59.392 37.037 0.00 0.00 0.00 2.29
2321 2526 7.038302 TCACTCTCAGAAGCCCTATAAAAGAAA 60.038 37.037 0.00 0.00 0.00 2.52
2322 2527 6.440647 TCACTCTCAGAAGCCCTATAAAAGAA 59.559 38.462 0.00 0.00 0.00 2.52
2323 2528 5.958380 TCACTCTCAGAAGCCCTATAAAAGA 59.042 40.000 0.00 0.00 0.00 2.52
2324 2529 6.227298 TCACTCTCAGAAGCCCTATAAAAG 57.773 41.667 0.00 0.00 0.00 2.27
2390 2595 7.649306 GTCTAAACCAATGCTAATTTATGCTGG 59.351 37.037 0.00 0.00 32.78 4.85
2411 2617 6.102663 GCATCAGAGTTGCTCTAAAGTCTAA 58.897 40.000 0.00 0.00 38.99 2.10
2412 2618 5.185828 TGCATCAGAGTTGCTCTAAAGTCTA 59.814 40.000 0.00 0.00 38.99 2.59
2413 2619 4.020751 TGCATCAGAGTTGCTCTAAAGTCT 60.021 41.667 0.00 0.00 38.99 3.24
2414 2620 4.248859 TGCATCAGAGTTGCTCTAAAGTC 58.751 43.478 0.00 0.00 38.99 3.01
2415 2621 4.277515 TGCATCAGAGTTGCTCTAAAGT 57.722 40.909 0.00 0.00 38.99 2.66
2416 2622 5.814764 ATTGCATCAGAGTTGCTCTAAAG 57.185 39.130 0.00 0.00 38.99 1.85
2417 2623 8.206867 AGTATATTGCATCAGAGTTGCTCTAAA 58.793 33.333 0.00 0.00 38.99 1.85
2488 2694 5.051816 CGTACAACCTCCTTTGTCAAAGTA 58.948 41.667 21.12 7.42 40.29 2.24
2577 2783 9.490379 AATGTCTTTACTCTTTACGTGAAGAAT 57.510 29.630 21.45 15.55 38.28 2.40
2661 2867 9.622004 CCAGATATGAAAATTGCAATGTCTATC 57.378 33.333 13.82 17.96 0.00 2.08
2725 2931 7.929785 TCACACTTAATTTCTCGTTTCTAGGTT 59.070 33.333 0.00 0.00 0.00 3.50
2735 2941 9.517361 GCGAATAATATCACACTTAATTTCTCG 57.483 33.333 0.00 0.00 0.00 4.04
2736 2942 9.813080 GGCGAATAATATCACACTTAATTTCTC 57.187 33.333 0.00 0.00 0.00 2.87
2737 2943 8.495949 CGGCGAATAATATCACACTTAATTTCT 58.504 33.333 0.00 0.00 0.00 2.52
2738 2944 7.744715 CCGGCGAATAATATCACACTTAATTTC 59.255 37.037 9.30 0.00 0.00 2.17
2741 2947 5.121768 GCCGGCGAATAATATCACACTTAAT 59.878 40.000 12.58 0.00 0.00 1.40
2743 2949 3.991773 GCCGGCGAATAATATCACACTTA 59.008 43.478 12.58 0.00 0.00 2.24
2747 2953 2.831685 AGCCGGCGAATAATATCACA 57.168 45.000 23.20 0.00 0.00 3.58
2748 2954 4.494199 GCATAAGCCGGCGAATAATATCAC 60.494 45.833 23.20 5.29 33.58 3.06
2772 2978 2.564062 CCCTTGATGTCATTGCCAAGTT 59.436 45.455 10.32 0.00 35.50 2.66
2774 2980 1.479323 CCCCTTGATGTCATTGCCAAG 59.521 52.381 5.98 5.98 36.64 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.