Multiple sequence alignment - TraesCS3B01G268900
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G268900
chr3B
100.000
1747
0
0
785
2531
432847251
432845505
0.000000e+00
3227
1
TraesCS3B01G268900
chr3B
100.000
405
0
0
1
405
432848035
432847631
0.000000e+00
749
2
TraesCS3B01G268900
chr3A
95.599
1727
49
17
813
2531
451665969
451667676
0.000000e+00
2743
3
TraesCS3B01G268900
chr3D
97.559
1065
22
4
813
1873
333503403
333504467
0.000000e+00
1820
4
TraesCS3B01G268900
chr3D
88.906
640
37
19
1911
2531
333504758
333505382
0.000000e+00
758
5
TraesCS3B01G268900
chr3D
82.020
406
49
11
1
404
495496207
495496590
8.730000e-85
324
6
TraesCS3B01G268900
chr2D
87.438
406
46
5
3
405
192188315
192187912
1.770000e-126
462
7
TraesCS3B01G268900
chr2D
83.646
373
34
11
34
405
378089130
378089476
2.430000e-85
326
8
TraesCS3B01G268900
chr2D
78.803
401
53
16
1
390
536490988
536491367
9.050000e-60
241
9
TraesCS3B01G268900
chr5D
89.008
373
35
1
1
373
337685540
337685174
8.250000e-125
457
10
TraesCS3B01G268900
chr4D
86.700
406
46
4
1
405
111915686
111916084
6.420000e-121
444
11
TraesCS3B01G268900
chr5A
86.207
406
45
5
1
405
459345159
459345554
1.800000e-116
429
12
TraesCS3B01G268900
chr5A
84.066
364
40
10
50
405
548647228
548646875
4.030000e-88
335
13
TraesCS3B01G268900
chr1D
85.870
368
39
3
38
405
276243055
276243409
1.840000e-101
379
14
TraesCS3B01G268900
chr7D
82.512
406
43
10
1
405
572267573
572267951
5.220000e-87
331
15
TraesCS3B01G268900
chr6D
83.883
273
22
17
1
268
157812264
157812009
9.050000e-60
241
16
TraesCS3B01G268900
chr1B
77.750
400
59
16
2
379
249631050
249631441
4.240000e-53
219
17
TraesCS3B01G268900
chr1A
81.857
237
35
5
1
234
492130069
492130300
2.570000e-45
193
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G268900
chr3B
432845505
432848035
2530
True
1988
3227
100.0000
1
2531
2
chr3B.!!$R1
2530
1
TraesCS3B01G268900
chr3A
451665969
451667676
1707
False
2743
2743
95.5990
813
2531
1
chr3A.!!$F1
1718
2
TraesCS3B01G268900
chr3D
333503403
333505382
1979
False
1289
1820
93.2325
813
2531
2
chr3D.!!$F2
1718
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
211
212
0.02877
TCTTTTGCACGCCGAACTTG
59.971
50.0
0.0
0.0
0.0
3.16
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2139
2434
1.039233
CATTGCTCCATGTGGGGGAC
61.039
60.0
0.29
0.0
41.01
4.46
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
17
18
2.179018
CTGAACCAAATGCCGCCG
59.821
61.111
0.00
0.00
0.00
6.46
18
19
2.281831
TGAACCAAATGCCGCCGA
60.282
55.556
0.00
0.00
0.00
5.54
19
20
2.178273
GAACCAAATGCCGCCGAC
59.822
61.111
0.00
0.00
0.00
4.79
20
21
3.336715
GAACCAAATGCCGCCGACC
62.337
63.158
0.00
0.00
0.00
4.79
71
72
4.473520
CCACCAAGCCCGAGCGAT
62.474
66.667
0.00
0.00
46.67
4.58
72
73
3.197790
CACCAAGCCCGAGCGATG
61.198
66.667
0.00
0.00
46.67
3.84
73
74
3.390521
ACCAAGCCCGAGCGATGA
61.391
61.111
0.00
0.00
46.67
2.92
74
75
2.892425
CCAAGCCCGAGCGATGAC
60.892
66.667
0.00
0.00
46.67
3.06
75
76
3.257561
CAAGCCCGAGCGATGACG
61.258
66.667
0.00
0.00
46.67
4.35
85
86
2.648102
CGATGACGCCTCGACGAC
60.648
66.667
2.12
0.00
38.38
4.34
86
87
2.648102
GATGACGCCTCGACGACG
60.648
66.667
0.00
0.00
41.26
5.12
87
88
4.831307
ATGACGCCTCGACGACGC
62.831
66.667
8.55
8.55
39.58
5.19
97
98
4.357947
GACGACGCCCAGCACAGA
62.358
66.667
0.00
0.00
0.00
3.41
98
99
3.858868
GACGACGCCCAGCACAGAA
62.859
63.158
0.00
0.00
0.00
3.02
99
100
3.114616
CGACGCCCAGCACAGAAG
61.115
66.667
0.00
0.00
0.00
2.85
100
101
3.426568
GACGCCCAGCACAGAAGC
61.427
66.667
0.00
0.00
0.00
3.86
104
105
3.052082
CCCAGCACAGAAGCCGTG
61.052
66.667
0.00
0.00
37.43
4.94
109
110
2.434884
CACAGAAGCCGTGCCGAT
60.435
61.111
0.00
0.00
0.00
4.18
110
111
2.434884
ACAGAAGCCGTGCCGATG
60.435
61.111
0.00
0.00
0.00
3.84
111
112
3.869272
CAGAAGCCGTGCCGATGC
61.869
66.667
0.00
0.00
38.26
3.91
123
124
4.473520
CGATGCCGACCAGCCCTT
62.474
66.667
0.00
0.00
38.22
3.95
124
125
2.825836
GATGCCGACCAGCCCTTG
60.826
66.667
0.00
0.00
0.00
3.61
134
135
3.946201
AGCCCTTGCACGCTGACT
61.946
61.111
1.46
0.00
41.13
3.41
135
136
3.426568
GCCCTTGCACGCTGACTC
61.427
66.667
0.00
0.00
37.47
3.36
136
137
2.743928
CCCTTGCACGCTGACTCC
60.744
66.667
0.00
0.00
0.00
3.85
137
138
2.031012
CCTTGCACGCTGACTCCA
59.969
61.111
0.00
0.00
0.00
3.86
138
139
2.320587
CCTTGCACGCTGACTCCAC
61.321
63.158
0.00
0.00
0.00
4.02
139
140
2.280797
TTGCACGCTGACTCCACC
60.281
61.111
0.00
0.00
0.00
4.61
140
141
4.662961
TGCACGCTGACTCCACCG
62.663
66.667
0.00
0.00
0.00
4.94
141
142
4.357947
GCACGCTGACTCCACCGA
62.358
66.667
0.00
0.00
0.00
4.69
142
143
2.430921
CACGCTGACTCCACCGAC
60.431
66.667
0.00
0.00
0.00
4.79
143
144
4.039357
ACGCTGACTCCACCGACG
62.039
66.667
0.00
0.00
0.00
5.12
146
147
4.778415
CTGACTCCACCGACGCCG
62.778
72.222
0.00
0.00
0.00
6.46
169
170
2.660552
CGACACCGCCGTTTGAGT
60.661
61.111
0.00
0.00
0.00
3.41
170
171
2.241880
CGACACCGCCGTTTGAGTT
61.242
57.895
0.00
0.00
0.00
3.01
171
172
1.768112
CGACACCGCCGTTTGAGTTT
61.768
55.000
0.00
0.00
0.00
2.66
172
173
0.316689
GACACCGCCGTTTGAGTTTG
60.317
55.000
0.00
0.00
0.00
2.93
173
174
0.745128
ACACCGCCGTTTGAGTTTGA
60.745
50.000
0.00
0.00
0.00
2.69
174
175
0.591170
CACCGCCGTTTGAGTTTGAT
59.409
50.000
0.00
0.00
0.00
2.57
175
176
0.591170
ACCGCCGTTTGAGTTTGATG
59.409
50.000
0.00
0.00
0.00
3.07
176
177
0.729140
CCGCCGTTTGAGTTTGATGC
60.729
55.000
0.00
0.00
0.00
3.91
177
178
0.040514
CGCCGTTTGAGTTTGATGCA
60.041
50.000
0.00
0.00
0.00
3.96
178
179
1.599171
CGCCGTTTGAGTTTGATGCAA
60.599
47.619
0.00
0.00
0.00
4.08
179
180
1.786579
GCCGTTTGAGTTTGATGCAAC
59.213
47.619
0.00
0.00
0.00
4.17
180
181
2.043411
CCGTTTGAGTTTGATGCAACG
58.957
47.619
0.00
0.00
0.00
4.10
181
182
1.447938
CGTTTGAGTTTGATGCAACGC
59.552
47.619
0.00
0.00
0.00
4.84
182
183
1.447938
GTTTGAGTTTGATGCAACGCG
59.552
47.619
3.53
3.53
0.00
6.01
183
184
0.660488
TTGAGTTTGATGCAACGCGT
59.340
45.000
5.58
5.58
0.00
6.01
184
185
0.660488
TGAGTTTGATGCAACGCGTT
59.340
45.000
20.79
20.79
0.00
4.84
185
186
1.318251
GAGTTTGATGCAACGCGTTC
58.682
50.000
23.92
17.01
0.00
3.95
186
187
0.384230
AGTTTGATGCAACGCGTTCG
60.384
50.000
23.92
18.16
42.43
3.95
198
199
1.658968
CGCGTTCGTCCTTTCTTTTG
58.341
50.000
0.00
0.00
0.00
2.44
199
200
1.395670
GCGTTCGTCCTTTCTTTTGC
58.604
50.000
0.00
0.00
0.00
3.68
200
201
1.268335
GCGTTCGTCCTTTCTTTTGCA
60.268
47.619
0.00
0.00
0.00
4.08
201
202
2.372350
CGTTCGTCCTTTCTTTTGCAC
58.628
47.619
0.00
0.00
0.00
4.57
202
203
2.372350
GTTCGTCCTTTCTTTTGCACG
58.628
47.619
0.00
0.00
0.00
5.34
203
204
0.306533
TCGTCCTTTCTTTTGCACGC
59.693
50.000
0.00
0.00
0.00
5.34
204
205
0.660300
CGTCCTTTCTTTTGCACGCC
60.660
55.000
0.00
0.00
0.00
5.68
205
206
0.660300
GTCCTTTCTTTTGCACGCCG
60.660
55.000
0.00
0.00
0.00
6.46
206
207
0.816018
TCCTTTCTTTTGCACGCCGA
60.816
50.000
0.00
0.00
0.00
5.54
207
208
0.030101
CCTTTCTTTTGCACGCCGAA
59.970
50.000
0.00
0.00
0.00
4.30
208
209
1.120437
CTTTCTTTTGCACGCCGAAC
58.880
50.000
0.00
0.00
0.00
3.95
209
210
0.736053
TTTCTTTTGCACGCCGAACT
59.264
45.000
0.00
0.00
0.00
3.01
210
211
0.736053
TTCTTTTGCACGCCGAACTT
59.264
45.000
0.00
0.00
0.00
2.66
211
212
0.028770
TCTTTTGCACGCCGAACTTG
59.971
50.000
0.00
0.00
0.00
3.16
212
213
0.248458
CTTTTGCACGCCGAACTTGT
60.248
50.000
0.00
0.00
0.00
3.16
213
214
0.171455
TTTTGCACGCCGAACTTGTT
59.829
45.000
0.00
0.00
0.00
2.83
214
215
1.015109
TTTGCACGCCGAACTTGTTA
58.985
45.000
0.00
0.00
0.00
2.41
215
216
1.231221
TTGCACGCCGAACTTGTTAT
58.769
45.000
0.00
0.00
0.00
1.89
216
217
1.231221
TGCACGCCGAACTTGTTATT
58.769
45.000
0.00
0.00
0.00
1.40
217
218
1.604755
TGCACGCCGAACTTGTTATTT
59.395
42.857
0.00
0.00
0.00
1.40
218
219
1.976045
GCACGCCGAACTTGTTATTTG
59.024
47.619
0.00
0.00
0.00
2.32
219
220
2.350007
GCACGCCGAACTTGTTATTTGA
60.350
45.455
0.00
0.00
0.00
2.69
220
221
3.669557
GCACGCCGAACTTGTTATTTGAT
60.670
43.478
0.00
0.00
0.00
2.57
221
222
4.088648
CACGCCGAACTTGTTATTTGATC
58.911
43.478
0.00
0.00
0.00
2.92
222
223
3.181524
ACGCCGAACTTGTTATTTGATCG
60.182
43.478
0.00
0.00
0.00
3.69
223
224
3.098636
GCCGAACTTGTTATTTGATCGC
58.901
45.455
0.00
0.00
0.00
4.58
224
225
3.680789
CCGAACTTGTTATTTGATCGCC
58.319
45.455
0.00
0.00
0.00
5.54
225
226
3.342269
CGAACTTGTTATTTGATCGCCG
58.658
45.455
0.00
0.00
0.00
6.46
226
227
3.061563
CGAACTTGTTATTTGATCGCCGA
59.938
43.478
0.00
0.00
0.00
5.54
227
228
4.434989
CGAACTTGTTATTTGATCGCCGAA
60.435
41.667
0.00
0.00
0.00
4.30
228
229
5.560966
AACTTGTTATTTGATCGCCGAAT
57.439
34.783
0.00
0.00
33.54
3.34
229
230
5.156804
ACTTGTTATTTGATCGCCGAATC
57.843
39.130
0.00
0.00
31.48
2.52
230
231
3.852471
TGTTATTTGATCGCCGAATCG
57.148
42.857
0.00
0.00
31.48
3.34
231
232
3.191669
TGTTATTTGATCGCCGAATCGT
58.808
40.909
0.82
0.00
31.48
3.73
232
233
3.000825
TGTTATTTGATCGCCGAATCGTG
59.999
43.478
0.82
0.00
31.48
4.35
233
234
0.937304
ATTTGATCGCCGAATCGTGG
59.063
50.000
0.82
0.00
0.00
4.94
234
235
0.390603
TTTGATCGCCGAATCGTGGT
60.391
50.000
0.82
0.00
0.00
4.16
235
236
0.456628
TTGATCGCCGAATCGTGGTA
59.543
50.000
0.82
0.00
0.00
3.25
236
237
0.456628
TGATCGCCGAATCGTGGTAA
59.543
50.000
0.82
0.00
0.00
2.85
237
238
0.850856
GATCGCCGAATCGTGGTAAC
59.149
55.000
0.82
0.00
0.00
2.50
246
247
3.380671
CGTGGTAACGTGATCGCC
58.619
61.111
0.00
0.00
44.93
5.54
247
248
2.502123
CGTGGTAACGTGATCGCCG
61.502
63.158
0.00
1.67
44.93
6.46
248
249
1.153978
GTGGTAACGTGATCGCCGA
60.154
57.895
11.07
0.00
41.18
5.54
249
250
0.733566
GTGGTAACGTGATCGCCGAA
60.734
55.000
11.07
0.00
41.18
4.30
250
251
0.733566
TGGTAACGTGATCGCCGAAC
60.734
55.000
11.07
8.35
41.18
3.95
251
252
0.457337
GGTAACGTGATCGCCGAACT
60.457
55.000
11.07
0.00
41.18
3.01
252
253
0.638746
GTAACGTGATCGCCGAACTG
59.361
55.000
11.07
0.00
41.18
3.16
253
254
0.241749
TAACGTGATCGCCGAACTGT
59.758
50.000
11.07
0.00
41.18
3.55
254
255
1.282248
AACGTGATCGCCGAACTGTG
61.282
55.000
11.07
0.00
41.18
3.66
255
256
1.443702
CGTGATCGCCGAACTGTGA
60.444
57.895
0.00
0.00
0.00
3.58
256
257
1.674611
CGTGATCGCCGAACTGTGAC
61.675
60.000
0.00
0.00
0.00
3.67
257
258
1.443702
TGATCGCCGAACTGTGACG
60.444
57.895
0.00
1.63
0.00
4.35
258
259
2.789203
GATCGCCGAACTGTGACGC
61.789
63.158
0.00
0.00
0.00
5.19
259
260
3.282745
ATCGCCGAACTGTGACGCT
62.283
57.895
0.00
0.00
0.00
5.07
260
261
3.767230
CGCCGAACTGTGACGCTG
61.767
66.667
2.86
0.00
0.00
5.18
261
262
2.355837
GCCGAACTGTGACGCTGA
60.356
61.111
0.00
0.00
0.00
4.26
262
263
1.738099
GCCGAACTGTGACGCTGAT
60.738
57.895
0.00
0.00
0.00
2.90
263
264
1.687494
GCCGAACTGTGACGCTGATC
61.687
60.000
0.00
0.00
0.00
2.92
264
265
1.406219
CCGAACTGTGACGCTGATCG
61.406
60.000
15.43
15.43
45.38
3.69
265
266
1.704582
GAACTGTGACGCTGATCGC
59.295
57.895
0.00
0.23
43.23
4.58
266
267
1.687494
GAACTGTGACGCTGATCGCC
61.687
60.000
0.00
0.00
43.23
5.54
267
268
3.250323
CTGTGACGCTGATCGCCG
61.250
66.667
3.61
3.61
43.23
6.46
268
269
3.971453
CTGTGACGCTGATCGCCGT
62.971
63.158
9.80
9.80
43.23
5.68
269
270
2.101575
GTGACGCTGATCGCCGTA
59.898
61.111
9.97
0.00
43.23
4.02
270
271
2.101575
TGACGCTGATCGCCGTAC
59.898
61.111
9.97
5.76
43.23
3.67
271
272
2.404186
TGACGCTGATCGCCGTACT
61.404
57.895
9.97
0.00
43.23
2.73
272
273
1.939785
GACGCTGATCGCCGTACTG
60.940
63.158
9.97
0.00
43.23
2.74
273
274
2.655364
CGCTGATCGCCGTACTGG
60.655
66.667
4.37
0.00
42.50
4.00
274
275
2.494918
GCTGATCGCCGTACTGGT
59.505
61.111
5.79
0.00
41.21
4.00
298
299
1.404843
TTTTTGGGAGTGGGAAACGG
58.595
50.000
0.00
0.00
0.00
4.44
299
300
0.551879
TTTTGGGAGTGGGAAACGGA
59.448
50.000
0.00
0.00
0.00
4.69
300
301
0.179012
TTTGGGAGTGGGAAACGGAC
60.179
55.000
0.00
0.00
0.00
4.79
301
302
2.059345
TTGGGAGTGGGAAACGGACC
62.059
60.000
0.00
0.00
0.00
4.46
302
303
2.522367
GGGAGTGGGAAACGGACCA
61.522
63.158
0.00
0.00
0.00
4.02
303
304
1.452801
GGAGTGGGAAACGGACCAA
59.547
57.895
0.00
0.00
38.73
3.67
304
305
0.605589
GGAGTGGGAAACGGACCAAG
60.606
60.000
0.00
0.00
38.73
3.61
305
306
0.108019
GAGTGGGAAACGGACCAAGT
59.892
55.000
0.00
0.00
38.73
3.16
306
307
0.549469
AGTGGGAAACGGACCAAGTT
59.451
50.000
0.00
0.00
38.73
2.66
307
308
1.064240
AGTGGGAAACGGACCAAGTTT
60.064
47.619
0.00
0.00
43.60
2.66
308
309
1.066454
GTGGGAAACGGACCAAGTTTG
59.934
52.381
2.59
0.00
41.32
2.93
309
310
1.064611
TGGGAAACGGACCAAGTTTGA
60.065
47.619
2.59
0.00
41.32
2.69
310
311
2.025898
GGGAAACGGACCAAGTTTGAA
58.974
47.619
2.59
0.00
41.32
2.69
311
312
2.626266
GGGAAACGGACCAAGTTTGAAT
59.374
45.455
2.59
0.00
41.32
2.57
312
313
3.069016
GGGAAACGGACCAAGTTTGAATT
59.931
43.478
2.59
0.00
41.32
2.17
313
314
4.442332
GGGAAACGGACCAAGTTTGAATTT
60.442
41.667
2.59
0.00
41.32
1.82
314
315
4.506288
GGAAACGGACCAAGTTTGAATTTG
59.494
41.667
2.59
0.00
41.32
2.32
315
316
3.092334
ACGGACCAAGTTTGAATTTGC
57.908
42.857
0.00
0.00
0.00
3.68
316
317
2.050691
CGGACCAAGTTTGAATTTGCG
58.949
47.619
0.00
0.00
0.00
4.85
317
318
2.287308
CGGACCAAGTTTGAATTTGCGA
60.287
45.455
0.00
0.00
0.00
5.10
318
319
3.049912
GGACCAAGTTTGAATTTGCGAC
58.950
45.455
0.00
0.00
0.00
5.19
319
320
2.719046
GACCAAGTTTGAATTTGCGACG
59.281
45.455
0.00
0.00
0.00
5.12
320
321
2.098443
ACCAAGTTTGAATTTGCGACGT
59.902
40.909
0.00
0.00
0.00
4.34
321
322
3.112580
CCAAGTTTGAATTTGCGACGTT
58.887
40.909
0.00
0.00
0.00
3.99
322
323
3.549873
CCAAGTTTGAATTTGCGACGTTT
59.450
39.130
0.00
0.00
0.00
3.60
323
324
4.032331
CCAAGTTTGAATTTGCGACGTTTT
59.968
37.500
0.00
0.00
0.00
2.43
324
325
4.753516
AGTTTGAATTTGCGACGTTTTG
57.246
36.364
0.00
0.00
0.00
2.44
325
326
3.549873
AGTTTGAATTTGCGACGTTTTGG
59.450
39.130
0.00
0.00
0.00
3.28
326
327
3.422417
TTGAATTTGCGACGTTTTGGA
57.578
38.095
0.00
0.00
0.00
3.53
327
328
2.993545
TGAATTTGCGACGTTTTGGAG
58.006
42.857
0.00
0.00
0.00
3.86
328
329
2.287308
TGAATTTGCGACGTTTTGGAGG
60.287
45.455
0.00
0.00
0.00
4.30
329
330
0.039527
ATTTGCGACGTTTTGGAGGC
60.040
50.000
0.00
0.00
0.00
4.70
330
331
2.381665
TTTGCGACGTTTTGGAGGCG
62.382
55.000
0.00
0.00
0.00
5.52
331
332
4.084888
GCGACGTTTTGGAGGCGG
62.085
66.667
0.00
0.00
0.00
6.13
332
333
4.084888
CGACGTTTTGGAGGCGGC
62.085
66.667
0.00
0.00
0.00
6.53
333
334
2.975799
GACGTTTTGGAGGCGGCA
60.976
61.111
13.08
0.00
33.26
5.69
334
335
3.249973
GACGTTTTGGAGGCGGCAC
62.250
63.158
13.08
4.32
33.26
5.01
335
336
4.038080
CGTTTTGGAGGCGGCACC
62.038
66.667
18.69
18.69
39.61
5.01
350
351
3.252284
ACCTGAGGGTGTGGCTGG
61.252
66.667
2.38
0.00
45.43
4.85
351
352
4.039092
CCTGAGGGTGTGGCTGGG
62.039
72.222
0.00
0.00
0.00
4.45
352
353
2.930019
CTGAGGGTGTGGCTGGGA
60.930
66.667
0.00
0.00
0.00
4.37
353
354
3.249189
TGAGGGTGTGGCTGGGAC
61.249
66.667
0.00
0.00
0.00
4.46
354
355
4.394712
GAGGGTGTGGCTGGGACG
62.395
72.222
0.00
0.00
0.00
4.79
356
357
3.315949
GGGTGTGGCTGGGACGTA
61.316
66.667
0.00
0.00
0.00
3.57
357
358
2.264794
GGTGTGGCTGGGACGTAG
59.735
66.667
0.00
0.00
0.00
3.51
358
359
2.280552
GGTGTGGCTGGGACGTAGA
61.281
63.158
0.00
0.00
0.00
2.59
359
360
1.614241
GGTGTGGCTGGGACGTAGAT
61.614
60.000
0.00
0.00
0.00
1.98
360
361
0.179108
GTGTGGCTGGGACGTAGATC
60.179
60.000
0.00
0.00
0.00
2.75
361
362
1.065928
GTGGCTGGGACGTAGATCG
59.934
63.158
0.00
0.00
46.00
3.69
362
363
2.027751
GGCTGGGACGTAGATCGC
59.972
66.667
0.00
0.00
44.19
4.58
363
364
2.491022
GGCTGGGACGTAGATCGCT
61.491
63.158
0.00
0.00
44.19
4.93
364
365
1.008309
GCTGGGACGTAGATCGCTC
60.008
63.158
0.00
0.00
44.19
5.03
365
366
1.655329
CTGGGACGTAGATCGCTCC
59.345
63.158
0.00
0.00
44.19
4.70
366
367
3.040844
GGGACGTAGATCGCTCCC
58.959
66.667
0.00
10.28
45.10
4.30
367
368
3.837578
GGACGTAGATCGCTCCCA
58.162
61.111
0.00
0.00
44.19
4.37
368
369
1.655329
GGACGTAGATCGCTCCCAG
59.345
63.158
0.00
0.00
44.19
4.45
369
370
1.655329
GACGTAGATCGCTCCCAGG
59.345
63.158
0.00
0.00
44.19
4.45
370
371
1.797211
GACGTAGATCGCTCCCAGGG
61.797
65.000
0.00
0.00
44.19
4.45
371
372
2.737830
GTAGATCGCTCCCAGGGC
59.262
66.667
0.00
0.00
0.00
5.19
372
373
2.524394
TAGATCGCTCCCAGGGCC
60.524
66.667
0.00
0.00
0.00
5.80
373
374
3.088090
TAGATCGCTCCCAGGGCCT
62.088
63.158
0.00
0.00
0.00
5.19
374
375
1.726192
TAGATCGCTCCCAGGGCCTA
61.726
60.000
5.28
0.00
0.00
3.93
375
376
2.040884
ATCGCTCCCAGGGCCTAA
60.041
61.111
5.28
0.00
0.00
2.69
376
377
1.692749
ATCGCTCCCAGGGCCTAAA
60.693
57.895
5.28
0.00
0.00
1.85
377
378
1.279025
ATCGCTCCCAGGGCCTAAAA
61.279
55.000
5.28
0.00
0.00
1.52
378
379
1.001393
CGCTCCCAGGGCCTAAAAA
60.001
57.895
5.28
0.00
0.00
1.94
379
380
0.395724
CGCTCCCAGGGCCTAAAAAT
60.396
55.000
5.28
0.00
0.00
1.82
380
381
1.403814
GCTCCCAGGGCCTAAAAATC
58.596
55.000
5.28
0.00
0.00
2.17
381
382
1.680338
CTCCCAGGGCCTAAAAATCG
58.320
55.000
5.28
0.00
0.00
3.34
382
383
0.395173
TCCCAGGGCCTAAAAATCGC
60.395
55.000
5.28
0.00
0.00
4.58
383
384
1.391933
CCCAGGGCCTAAAAATCGCC
61.392
60.000
5.28
0.00
42.23
5.54
384
385
1.724582
CCAGGGCCTAAAAATCGCCG
61.725
60.000
5.28
0.00
43.99
6.46
385
386
1.453197
AGGGCCTAAAAATCGCCGG
60.453
57.895
2.82
0.00
43.99
6.13
386
387
1.452470
GGGCCTAAAAATCGCCGGA
60.452
57.895
5.05
0.00
43.99
5.14
387
388
1.721664
GGGCCTAAAAATCGCCGGAC
61.722
60.000
5.05
0.00
43.99
4.79
388
389
1.350665
GCCTAAAAATCGCCGGACG
59.649
57.895
5.05
9.12
45.62
4.79
399
400
4.137872
CCGGACGAGCGCCCTAAA
62.138
66.667
2.29
0.00
0.00
1.85
400
401
2.582498
CGGACGAGCGCCCTAAAG
60.582
66.667
2.29
0.00
0.00
1.85
401
402
2.890371
GGACGAGCGCCCTAAAGA
59.110
61.111
2.29
0.00
0.00
2.52
402
403
1.227002
GGACGAGCGCCCTAAAGAG
60.227
63.158
2.29
0.00
0.00
2.85
403
404
1.878975
GACGAGCGCCCTAAAGAGC
60.879
63.158
2.29
0.00
0.00
4.09
801
802
4.115199
GGGGGCGCAAGTGGAGAT
62.115
66.667
10.83
0.00
41.68
2.75
802
803
2.825836
GGGGCGCAAGTGGAGATG
60.826
66.667
10.83
0.00
41.68
2.90
803
804
3.512516
GGGCGCAAGTGGAGATGC
61.513
66.667
10.83
0.00
39.17
3.91
804
805
2.437359
GGCGCAAGTGGAGATGCT
60.437
61.111
10.83
0.00
40.39
3.79
805
806
2.467826
GGCGCAAGTGGAGATGCTC
61.468
63.158
10.83
0.00
40.39
4.26
806
807
1.449246
GCGCAAGTGGAGATGCTCT
60.449
57.895
0.30
0.00
40.39
4.09
807
808
1.023513
GCGCAAGTGGAGATGCTCTT
61.024
55.000
0.30
0.00
40.39
2.85
808
809
1.740380
GCGCAAGTGGAGATGCTCTTA
60.740
52.381
0.30
0.00
40.39
2.10
809
810
2.200067
CGCAAGTGGAGATGCTCTTAG
58.800
52.381
0.00
0.00
40.39
2.18
810
811
2.417924
CGCAAGTGGAGATGCTCTTAGT
60.418
50.000
0.00
0.00
40.39
2.24
811
812
2.935201
GCAAGTGGAGATGCTCTTAGTG
59.065
50.000
0.00
0.00
39.46
2.74
907
909
5.884232
TGATTATATAGATAGCACCGGTCGT
59.116
40.000
2.59
0.00
0.00
4.34
979
981
3.358076
CTCCCGCTCACTCCCGAAC
62.358
68.421
0.00
0.00
0.00
3.95
989
991
2.602267
TCCCGAACCGAAGCCTCA
60.602
61.111
0.00
0.00
0.00
3.86
1071
1073
4.731853
TCACCATCCCCCTCCGCA
62.732
66.667
0.00
0.00
0.00
5.69
1407
1409
2.214216
ACTGACCAACCTGGCGCTA
61.214
57.895
7.64
0.00
42.67
4.26
1434
1436
1.694696
GCCAAGGATCTTATCGAGGGT
59.305
52.381
0.00
0.00
0.00
4.34
1518
1520
4.699522
GGAGTCGGCGCCAAGGTT
62.700
66.667
28.98
6.42
34.50
3.50
1568
1572
4.711846
GGCTCCTTTTTCTCCCATTACATT
59.288
41.667
0.00
0.00
0.00
2.71
1616
1620
2.238646
TCCTCTTGTAATTGCCGTGGAT
59.761
45.455
0.00
0.00
0.00
3.41
1677
1687
5.591643
AGTTCATGTTCGTGTGTTGTATC
57.408
39.130
0.00
0.00
0.00
2.24
1690
1700
7.490079
TCGTGTGTTGTATCCAATCTTGTATAC
59.510
37.037
0.00
0.00
32.54
1.47
1695
1705
9.826574
TGTTGTATCCAATCTTGTATACTTACC
57.173
33.333
4.17
0.00
32.95
2.85
1708
1718
6.818233
TGTATACTTACCGGATGTTGCATTA
58.182
36.000
9.46
0.00
0.00
1.90
1791
1802
4.099266
TGTGCATTGCCAGTTTTAGAGTTT
59.901
37.500
6.12
0.00
0.00
2.66
1829
1840
3.248602
GCGGCATATCTCTCGTTTTGATT
59.751
43.478
0.00
0.00
0.00
2.57
1924
2206
2.966516
GGATTGGAAGTATCTCCCGAGT
59.033
50.000
0.00
0.00
34.22
4.18
2139
2434
6.262273
ACAGTAATGTGAAAGTGTACCCTTTG
59.738
38.462
8.13
0.00
34.87
2.77
2303
2601
4.853924
AACCTTGATTTGCCTACTGTTG
57.146
40.909
0.00
0.00
0.00
3.33
2308
2606
3.826524
TGATTTGCCTACTGTTGTGGAA
58.173
40.909
0.00
0.00
0.00
3.53
2448
2749
4.160439
TGATGTCGCTAGACCTTCTGAATT
59.840
41.667
0.00
0.00
46.51
2.17
2484
2785
9.513727
AATGCCAAACAAATGAACAATTTAAAC
57.486
25.926
0.00
0.00
36.28
2.01
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
0
1
2.179018
CGGCGGCATTTGGTTCAG
59.821
61.111
10.53
0.00
0.00
3.02
1
2
2.281831
TCGGCGGCATTTGGTTCA
60.282
55.556
10.53
0.00
0.00
3.18
2
3
2.178273
GTCGGCGGCATTTGGTTC
59.822
61.111
6.63
0.00
0.00
3.62
3
4
3.370231
GGTCGGCGGCATTTGGTT
61.370
61.111
15.59
0.00
0.00
3.67
54
55
4.473520
ATCGCTCGGGCTTGGTGG
62.474
66.667
5.36
0.00
36.09
4.61
55
56
3.197790
CATCGCTCGGGCTTGGTG
61.198
66.667
5.36
0.00
36.09
4.17
56
57
3.390521
TCATCGCTCGGGCTTGGT
61.391
61.111
5.36
0.00
36.09
3.67
57
58
2.892425
GTCATCGCTCGGGCTTGG
60.892
66.667
5.36
0.00
36.09
3.61
58
59
3.257561
CGTCATCGCTCGGGCTTG
61.258
66.667
5.36
2.75
36.09
4.01
68
69
2.648102
GTCGTCGAGGCGTCATCG
60.648
66.667
7.26
10.06
41.50
3.84
69
70
2.648102
CGTCGTCGAGGCGTCATC
60.648
66.667
7.26
0.00
44.05
2.92
80
81
3.858868
TTCTGTGCTGGGCGTCGTC
62.859
63.158
0.00
0.00
0.00
4.20
81
82
3.865929
CTTCTGTGCTGGGCGTCGT
62.866
63.158
0.00
0.00
0.00
4.34
82
83
3.114616
CTTCTGTGCTGGGCGTCG
61.115
66.667
0.00
0.00
0.00
5.12
83
84
3.426568
GCTTCTGTGCTGGGCGTC
61.427
66.667
0.00
0.00
0.00
5.19
87
88
3.052082
CACGGCTTCTGTGCTGGG
61.052
66.667
0.00
0.00
43.17
4.45
106
107
4.473520
AAGGGCTGGTCGGCATCG
62.474
66.667
4.06
0.00
40.61
3.84
107
108
2.825836
CAAGGGCTGGTCGGCATC
60.826
66.667
4.06
0.00
40.61
3.91
117
118
3.890936
GAGTCAGCGTGCAAGGGCT
62.891
63.158
0.79
1.79
41.91
5.19
118
119
3.426568
GAGTCAGCGTGCAAGGGC
61.427
66.667
0.79
0.00
41.68
5.19
119
120
2.743928
GGAGTCAGCGTGCAAGGG
60.744
66.667
0.79
0.00
0.00
3.95
120
121
2.031012
TGGAGTCAGCGTGCAAGG
59.969
61.111
0.79
0.00
0.00
3.61
121
122
2.320587
GGTGGAGTCAGCGTGCAAG
61.321
63.158
0.00
0.00
0.00
4.01
122
123
2.280797
GGTGGAGTCAGCGTGCAA
60.281
61.111
0.00
0.00
0.00
4.08
129
130
4.778415
CGGCGTCGGTGGAGTCAG
62.778
72.222
0.00
0.00
0.00
3.51
152
153
1.768112
AAACTCAAACGGCGGTGTCG
61.768
55.000
13.24
7.48
36.42
4.35
153
154
0.316689
CAAACTCAAACGGCGGTGTC
60.317
55.000
13.24
0.00
0.00
3.67
154
155
0.745128
TCAAACTCAAACGGCGGTGT
60.745
50.000
13.24
0.00
0.00
4.16
155
156
0.591170
ATCAAACTCAAACGGCGGTG
59.409
50.000
13.24
9.36
0.00
4.94
156
157
0.591170
CATCAAACTCAAACGGCGGT
59.409
50.000
13.24
0.00
0.00
5.68
157
158
0.729140
GCATCAAACTCAAACGGCGG
60.729
55.000
13.24
0.00
0.00
6.13
158
159
0.040514
TGCATCAAACTCAAACGGCG
60.041
50.000
4.80
4.80
0.00
6.46
159
160
1.786579
GTTGCATCAAACTCAAACGGC
59.213
47.619
0.00
0.00
0.00
5.68
160
161
2.043411
CGTTGCATCAAACTCAAACGG
58.957
47.619
0.00
0.00
0.00
4.44
161
162
1.447938
GCGTTGCATCAAACTCAAACG
59.552
47.619
0.00
0.00
0.00
3.60
162
163
1.447938
CGCGTTGCATCAAACTCAAAC
59.552
47.619
0.00
0.00
0.00
2.93
163
164
1.064803
ACGCGTTGCATCAAACTCAAA
59.935
42.857
5.58
0.00
0.00
2.69
164
165
0.660488
ACGCGTTGCATCAAACTCAA
59.340
45.000
5.58
0.00
0.00
3.02
165
166
0.660488
AACGCGTTGCATCAAACTCA
59.340
45.000
26.00
0.00
0.00
3.41
166
167
1.318251
GAACGCGTTGCATCAAACTC
58.682
50.000
31.89
6.88
0.00
3.01
167
168
0.384230
CGAACGCGTTGCATCAAACT
60.384
50.000
31.89
0.00
0.00
2.66
168
169
2.043022
CGAACGCGTTGCATCAAAC
58.957
52.632
31.89
11.19
0.00
2.93
169
170
4.505972
CGAACGCGTTGCATCAAA
57.494
50.000
31.89
0.00
0.00
2.69
179
180
1.658968
CAAAAGAAAGGACGAACGCG
58.341
50.000
3.53
3.53
44.79
6.01
180
181
1.268335
TGCAAAAGAAAGGACGAACGC
60.268
47.619
0.00
0.00
0.00
4.84
181
182
2.372350
GTGCAAAAGAAAGGACGAACG
58.628
47.619
0.00
0.00
0.00
3.95
186
187
0.660300
CGGCGTGCAAAAGAAAGGAC
60.660
55.000
0.00
0.00
0.00
3.85
187
188
0.816018
TCGGCGTGCAAAAGAAAGGA
60.816
50.000
6.85
0.00
0.00
3.36
188
189
0.030101
TTCGGCGTGCAAAAGAAAGG
59.970
50.000
6.85
0.00
0.00
3.11
189
190
1.120437
GTTCGGCGTGCAAAAGAAAG
58.880
50.000
6.85
0.00
0.00
2.62
190
191
0.736053
AGTTCGGCGTGCAAAAGAAA
59.264
45.000
6.85
0.00
0.00
2.52
191
192
0.736053
AAGTTCGGCGTGCAAAAGAA
59.264
45.000
6.85
0.00
0.00
2.52
192
193
0.028770
CAAGTTCGGCGTGCAAAAGA
59.971
50.000
6.85
0.00
0.00
2.52
193
194
0.248458
ACAAGTTCGGCGTGCAAAAG
60.248
50.000
6.85
0.00
0.00
2.27
194
195
0.171455
AACAAGTTCGGCGTGCAAAA
59.829
45.000
6.85
0.00
0.00
2.44
195
196
1.015109
TAACAAGTTCGGCGTGCAAA
58.985
45.000
6.85
0.00
0.00
3.68
196
197
1.231221
ATAACAAGTTCGGCGTGCAA
58.769
45.000
6.85
0.00
0.00
4.08
197
198
1.231221
AATAACAAGTTCGGCGTGCA
58.769
45.000
6.85
0.00
0.00
4.57
198
199
1.976045
CAAATAACAAGTTCGGCGTGC
59.024
47.619
6.85
0.48
0.00
5.34
199
200
3.529634
TCAAATAACAAGTTCGGCGTG
57.470
42.857
6.85
0.00
0.00
5.34
200
201
3.181524
CGATCAAATAACAAGTTCGGCGT
60.182
43.478
6.85
0.00
0.00
5.68
201
202
3.342269
CGATCAAATAACAAGTTCGGCG
58.658
45.455
0.00
0.00
0.00
6.46
202
203
3.098636
GCGATCAAATAACAAGTTCGGC
58.901
45.455
0.00
0.00
0.00
5.54
203
204
3.680789
GGCGATCAAATAACAAGTTCGG
58.319
45.455
0.00
0.00
0.00
4.30
204
205
3.061563
TCGGCGATCAAATAACAAGTTCG
59.938
43.478
4.99
0.00
0.00
3.95
205
206
4.593597
TCGGCGATCAAATAACAAGTTC
57.406
40.909
4.99
0.00
0.00
3.01
206
207
5.560966
ATTCGGCGATCAAATAACAAGTT
57.439
34.783
11.76
0.00
0.00
2.66
207
208
4.260212
CGATTCGGCGATCAAATAACAAGT
60.260
41.667
11.76
0.00
0.00
3.16
208
209
4.203828
CGATTCGGCGATCAAATAACAAG
58.796
43.478
11.76
0.00
0.00
3.16
209
210
3.619483
ACGATTCGGCGATCAAATAACAA
59.381
39.130
11.76
0.00
34.83
2.83
210
211
3.000825
CACGATTCGGCGATCAAATAACA
59.999
43.478
11.76
0.00
34.83
2.41
211
212
3.531982
CACGATTCGGCGATCAAATAAC
58.468
45.455
11.76
0.00
34.83
1.89
212
213
2.542178
CCACGATTCGGCGATCAAATAA
59.458
45.455
11.76
0.00
34.83
1.40
213
214
2.131972
CCACGATTCGGCGATCAAATA
58.868
47.619
11.76
0.00
34.83
1.40
214
215
0.937304
CCACGATTCGGCGATCAAAT
59.063
50.000
11.76
0.00
34.83
2.32
215
216
0.390603
ACCACGATTCGGCGATCAAA
60.391
50.000
11.76
0.00
34.83
2.69
216
217
0.456628
TACCACGATTCGGCGATCAA
59.543
50.000
11.76
0.00
34.83
2.57
217
218
0.456628
TTACCACGATTCGGCGATCA
59.543
50.000
11.76
0.00
34.83
2.92
218
219
0.850856
GTTACCACGATTCGGCGATC
59.149
55.000
11.76
9.74
34.83
3.69
219
220
2.967740
GTTACCACGATTCGGCGAT
58.032
52.632
11.76
0.10
34.83
4.58
220
221
4.481870
GTTACCACGATTCGGCGA
57.518
55.556
4.99
4.99
34.83
5.54
230
231
0.733566
TTCGGCGATCACGTTACCAC
60.734
55.000
11.76
0.00
41.98
4.16
231
232
0.733566
GTTCGGCGATCACGTTACCA
60.734
55.000
11.76
0.00
41.98
3.25
232
233
0.457337
AGTTCGGCGATCACGTTACC
60.457
55.000
19.04
0.00
41.98
2.85
233
234
0.638746
CAGTTCGGCGATCACGTTAC
59.361
55.000
19.04
8.95
41.98
2.50
234
235
0.241749
ACAGTTCGGCGATCACGTTA
59.758
50.000
19.04
0.00
41.98
3.18
235
236
1.006571
ACAGTTCGGCGATCACGTT
60.007
52.632
19.04
2.06
41.98
3.99
236
237
1.733041
CACAGTTCGGCGATCACGT
60.733
57.895
19.04
12.68
41.98
4.49
237
238
1.443702
TCACAGTTCGGCGATCACG
60.444
57.895
19.04
12.10
42.93
4.35
238
239
1.674611
CGTCACAGTTCGGCGATCAC
61.675
60.000
19.04
11.84
0.00
3.06
239
240
1.443702
CGTCACAGTTCGGCGATCA
60.444
57.895
19.04
0.00
0.00
2.92
240
241
2.789203
GCGTCACAGTTCGGCGATC
61.789
63.158
11.76
10.67
0.00
3.69
241
242
2.809601
GCGTCACAGTTCGGCGAT
60.810
61.111
11.76
0.00
0.00
4.58
242
243
3.973516
AGCGTCACAGTTCGGCGA
61.974
61.111
4.99
4.99
0.00
5.54
243
244
3.767230
CAGCGTCACAGTTCGGCG
61.767
66.667
0.00
0.00
0.00
6.46
244
245
1.687494
GATCAGCGTCACAGTTCGGC
61.687
60.000
0.00
0.00
0.00
5.54
245
246
1.406219
CGATCAGCGTCACAGTTCGG
61.406
60.000
0.00
0.00
34.64
4.30
246
247
1.983907
CGATCAGCGTCACAGTTCG
59.016
57.895
0.00
0.00
34.64
3.95
247
248
1.704582
GCGATCAGCGTCACAGTTC
59.295
57.895
0.00
0.00
43.41
3.01
248
249
3.862124
GCGATCAGCGTCACAGTT
58.138
55.556
0.00
0.00
43.41
3.16
258
259
0.108804
AACACCAGTACGGCGATCAG
60.109
55.000
16.62
2.57
39.03
2.90
259
260
0.319083
AAACACCAGTACGGCGATCA
59.681
50.000
16.62
0.00
39.03
2.92
260
261
1.435577
AAAACACCAGTACGGCGATC
58.564
50.000
16.62
5.88
39.03
3.69
261
262
1.886886
AAAAACACCAGTACGGCGAT
58.113
45.000
16.62
0.00
39.03
4.58
262
263
3.383092
AAAAACACCAGTACGGCGA
57.617
47.368
16.62
0.00
39.03
5.54
279
280
1.063867
TCCGTTTCCCACTCCCAAAAA
60.064
47.619
0.00
0.00
0.00
1.94
280
281
0.551879
TCCGTTTCCCACTCCCAAAA
59.448
50.000
0.00
0.00
0.00
2.44
281
282
0.179012
GTCCGTTTCCCACTCCCAAA
60.179
55.000
0.00
0.00
0.00
3.28
282
283
1.452801
GTCCGTTTCCCACTCCCAA
59.547
57.895
0.00
0.00
0.00
4.12
283
284
2.522367
GGTCCGTTTCCCACTCCCA
61.522
63.158
0.00
0.00
0.00
4.37
284
285
2.059345
TTGGTCCGTTTCCCACTCCC
62.059
60.000
0.00
0.00
0.00
4.30
285
286
0.605589
CTTGGTCCGTTTCCCACTCC
60.606
60.000
0.00
0.00
0.00
3.85
286
287
0.108019
ACTTGGTCCGTTTCCCACTC
59.892
55.000
0.00
0.00
0.00
3.51
287
288
0.549469
AACTTGGTCCGTTTCCCACT
59.451
50.000
0.00
0.00
0.00
4.00
288
289
1.066454
CAAACTTGGTCCGTTTCCCAC
59.934
52.381
0.00
0.00
32.64
4.61
289
290
1.064611
TCAAACTTGGTCCGTTTCCCA
60.065
47.619
0.00
0.00
32.64
4.37
290
291
1.682740
TCAAACTTGGTCCGTTTCCC
58.317
50.000
0.00
0.00
32.64
3.97
291
292
4.316205
AATTCAAACTTGGTCCGTTTCC
57.684
40.909
0.00
0.00
32.64
3.13
292
293
4.026062
GCAAATTCAAACTTGGTCCGTTTC
60.026
41.667
0.00
0.00
32.64
2.78
293
294
3.868661
GCAAATTCAAACTTGGTCCGTTT
59.131
39.130
0.00
0.00
35.12
3.60
294
295
3.453424
GCAAATTCAAACTTGGTCCGTT
58.547
40.909
0.00
0.00
0.00
4.44
295
296
2.542824
CGCAAATTCAAACTTGGTCCGT
60.543
45.455
0.00
0.00
0.00
4.69
296
297
2.050691
CGCAAATTCAAACTTGGTCCG
58.949
47.619
0.00
0.00
0.00
4.79
297
298
3.049912
GTCGCAAATTCAAACTTGGTCC
58.950
45.455
0.00
0.00
0.00
4.46
298
299
2.719046
CGTCGCAAATTCAAACTTGGTC
59.281
45.455
0.00
0.00
0.00
4.02
299
300
2.098443
ACGTCGCAAATTCAAACTTGGT
59.902
40.909
0.00
0.00
0.00
3.67
300
301
2.726633
ACGTCGCAAATTCAAACTTGG
58.273
42.857
0.00
0.00
0.00
3.61
301
302
4.753516
AAACGTCGCAAATTCAAACTTG
57.246
36.364
0.00
0.00
0.00
3.16
302
303
4.032331
CCAAAACGTCGCAAATTCAAACTT
59.968
37.500
0.00
0.00
0.00
2.66
303
304
3.549873
CCAAAACGTCGCAAATTCAAACT
59.450
39.130
0.00
0.00
0.00
2.66
304
305
3.548268
TCCAAAACGTCGCAAATTCAAAC
59.452
39.130
0.00
0.00
0.00
2.93
305
306
3.770666
TCCAAAACGTCGCAAATTCAAA
58.229
36.364
0.00
0.00
0.00
2.69
306
307
3.367607
CTCCAAAACGTCGCAAATTCAA
58.632
40.909
0.00
0.00
0.00
2.69
307
308
2.287308
CCTCCAAAACGTCGCAAATTCA
60.287
45.455
0.00
0.00
0.00
2.57
308
309
2.315901
CCTCCAAAACGTCGCAAATTC
58.684
47.619
0.00
0.00
0.00
2.17
309
310
1.601914
GCCTCCAAAACGTCGCAAATT
60.602
47.619
0.00
0.00
0.00
1.82
310
311
0.039527
GCCTCCAAAACGTCGCAAAT
60.040
50.000
0.00
0.00
0.00
2.32
311
312
1.357334
GCCTCCAAAACGTCGCAAA
59.643
52.632
0.00
0.00
0.00
3.68
312
313
2.887889
CGCCTCCAAAACGTCGCAA
61.888
57.895
0.00
0.00
0.00
4.85
313
314
3.342627
CGCCTCCAAAACGTCGCA
61.343
61.111
0.00
0.00
0.00
5.10
314
315
4.084888
CCGCCTCCAAAACGTCGC
62.085
66.667
0.00
0.00
0.00
5.19
315
316
4.084888
GCCGCCTCCAAAACGTCG
62.085
66.667
0.00
0.00
0.00
5.12
316
317
2.975799
TGCCGCCTCCAAAACGTC
60.976
61.111
0.00
0.00
0.00
4.34
317
318
3.284449
GTGCCGCCTCCAAAACGT
61.284
61.111
0.00
0.00
0.00
3.99
318
319
4.038080
GGTGCCGCCTCCAAAACG
62.038
66.667
0.00
0.00
0.00
3.60
319
320
2.597510
AGGTGCCGCCTCCAAAAC
60.598
61.111
0.00
0.00
46.96
2.43
320
321
2.597217
CAGGTGCCGCCTCCAAAA
60.597
61.111
0.00
0.00
46.96
2.44
321
322
3.551496
CTCAGGTGCCGCCTCCAAA
62.551
63.158
0.00
0.00
46.96
3.28
322
323
4.020617
CTCAGGTGCCGCCTCCAA
62.021
66.667
0.00
0.00
46.96
3.53
334
335
4.039092
CCCAGCCACACCCTCAGG
62.039
72.222
0.00
0.00
40.04
3.86
335
336
2.930019
TCCCAGCCACACCCTCAG
60.930
66.667
0.00
0.00
0.00
3.35
336
337
3.249189
GTCCCAGCCACACCCTCA
61.249
66.667
0.00
0.00
0.00
3.86
337
338
4.394712
CGTCCCAGCCACACCCTC
62.395
72.222
0.00
0.00
0.00
4.30
338
339
3.839046
TACGTCCCAGCCACACCCT
62.839
63.158
0.00
0.00
0.00
4.34
339
340
3.310860
CTACGTCCCAGCCACACCC
62.311
68.421
0.00
0.00
0.00
4.61
340
341
1.614241
ATCTACGTCCCAGCCACACC
61.614
60.000
0.00
0.00
0.00
4.16
341
342
0.179108
GATCTACGTCCCAGCCACAC
60.179
60.000
0.00
0.00
0.00
3.82
342
343
1.663379
CGATCTACGTCCCAGCCACA
61.663
60.000
0.00
0.00
37.22
4.17
343
344
1.065928
CGATCTACGTCCCAGCCAC
59.934
63.158
0.00
0.00
37.22
5.01
344
345
2.782222
GCGATCTACGTCCCAGCCA
61.782
63.158
0.00
0.00
44.60
4.75
345
346
2.027751
GCGATCTACGTCCCAGCC
59.972
66.667
0.00
0.00
44.60
4.85
346
347
1.008309
GAGCGATCTACGTCCCAGC
60.008
63.158
0.00
0.00
44.60
4.85
347
348
1.655329
GGAGCGATCTACGTCCCAG
59.345
63.158
0.00
0.00
44.60
4.45
348
349
3.837578
GGAGCGATCTACGTCCCA
58.162
61.111
0.00
0.00
44.60
4.37
349
350
3.040844
GGGAGCGATCTACGTCCC
58.959
66.667
0.00
0.00
46.27
4.46
350
351
1.655329
CTGGGAGCGATCTACGTCC
59.345
63.158
0.00
0.00
44.60
4.79
351
352
1.655329
CCTGGGAGCGATCTACGTC
59.345
63.158
0.00
0.00
44.60
4.34
352
353
1.828660
CCCTGGGAGCGATCTACGT
60.829
63.158
7.01
0.00
44.60
3.57
353
354
3.043419
CCCTGGGAGCGATCTACG
58.957
66.667
7.01
0.00
45.66
3.51
354
355
2.737830
GCCCTGGGAGCGATCTAC
59.262
66.667
19.27
0.00
0.00
2.59
355
356
1.726192
TAGGCCCTGGGAGCGATCTA
61.726
60.000
19.27
4.76
0.00
1.98
356
357
2.605535
TTAGGCCCTGGGAGCGATCT
62.606
60.000
19.27
5.72
0.00
2.75
357
358
1.696097
TTTAGGCCCTGGGAGCGATC
61.696
60.000
19.27
0.00
0.00
3.69
358
359
1.279025
TTTTAGGCCCTGGGAGCGAT
61.279
55.000
19.27
0.00
0.00
4.58
359
360
1.493854
TTTTTAGGCCCTGGGAGCGA
61.494
55.000
19.27
0.00
0.00
4.93
360
361
0.395724
ATTTTTAGGCCCTGGGAGCG
60.396
55.000
19.27
0.00
0.00
5.03
361
362
1.403814
GATTTTTAGGCCCTGGGAGC
58.596
55.000
19.27
0.75
0.00
4.70
362
363
1.680338
CGATTTTTAGGCCCTGGGAG
58.320
55.000
19.27
0.00
0.00
4.30
363
364
0.395173
GCGATTTTTAGGCCCTGGGA
60.395
55.000
19.27
0.00
0.00
4.37
364
365
1.391933
GGCGATTTTTAGGCCCTGGG
61.392
60.000
8.86
8.86
41.01
4.45
365
366
1.724582
CGGCGATTTTTAGGCCCTGG
61.725
60.000
0.00
0.00
43.99
4.45
366
367
1.724582
CCGGCGATTTTTAGGCCCTG
61.725
60.000
9.30
0.00
43.99
4.45
367
368
1.453197
CCGGCGATTTTTAGGCCCT
60.453
57.895
9.30
0.00
43.99
5.19
368
369
1.452470
TCCGGCGATTTTTAGGCCC
60.452
57.895
9.30
0.00
43.99
5.80
369
370
1.725665
GTCCGGCGATTTTTAGGCC
59.274
57.895
9.30
0.00
43.42
5.19
370
371
1.085501
TCGTCCGGCGATTTTTAGGC
61.086
55.000
9.30
0.00
45.68
3.93
371
372
3.053662
TCGTCCGGCGATTTTTAGG
57.946
52.632
9.30
0.00
45.68
2.69
382
383
4.137872
TTTAGGGCGCTCGTCCGG
62.138
66.667
6.54
0.00
46.16
5.14
383
384
2.582498
CTTTAGGGCGCTCGTCCG
60.582
66.667
6.54
0.00
46.16
4.79
384
385
1.227002
CTCTTTAGGGCGCTCGTCC
60.227
63.158
6.54
4.52
40.91
4.79
385
386
1.878975
GCTCTTTAGGGCGCTCGTC
60.879
63.158
6.54
0.00
0.00
4.20
386
387
2.184579
GCTCTTTAGGGCGCTCGT
59.815
61.111
6.54
1.44
0.00
4.18
387
388
2.956964
CGCTCTTTAGGGCGCTCG
60.957
66.667
11.45
0.00
44.64
5.03
784
785
4.115199
ATCTCCACTTGCGCCCCC
62.115
66.667
4.18
0.00
0.00
5.40
785
786
2.825836
CATCTCCACTTGCGCCCC
60.826
66.667
4.18
0.00
0.00
5.80
786
787
3.512516
GCATCTCCACTTGCGCCC
61.513
66.667
4.18
0.00
0.00
6.13
787
788
2.437359
AGCATCTCCACTTGCGCC
60.437
61.111
4.18
0.00
43.61
6.53
788
789
3.096791
GAGCATCTCCACTTGCGC
58.903
61.111
0.00
0.00
43.61
6.09
795
796
7.956408
ATGGGATCCACTAAGAGCATCTCCA
62.956
48.000
15.23
0.00
40.40
3.86
796
797
5.549665
ATGGGATCCACTAAGAGCATCTCC
61.550
50.000
15.23
0.00
40.40
3.71
797
798
3.582208
ATGGGATCCACTAAGAGCATCTC
59.418
47.826
15.23
0.00
40.40
2.75
798
799
3.596101
ATGGGATCCACTAAGAGCATCT
58.404
45.455
15.23
0.00
42.68
2.90
799
800
4.070716
CAATGGGATCCACTAAGAGCATC
58.929
47.826
15.23
0.00
35.80
3.91
800
801
3.181436
CCAATGGGATCCACTAAGAGCAT
60.181
47.826
15.23
1.90
35.80
3.79
801
802
2.173356
CCAATGGGATCCACTAAGAGCA
59.827
50.000
15.23
0.00
35.80
4.26
802
803
2.856222
CCAATGGGATCCACTAAGAGC
58.144
52.381
15.23
0.00
35.80
4.09
803
804
2.441001
AGCCAATGGGATCCACTAAGAG
59.559
50.000
15.23
0.00
35.80
2.85
804
805
2.492025
AGCCAATGGGATCCACTAAGA
58.508
47.619
15.23
0.00
35.80
2.10
805
806
3.303351
AAGCCAATGGGATCCACTAAG
57.697
47.619
15.23
0.00
35.80
2.18
806
807
3.364549
CAAAGCCAATGGGATCCACTAA
58.635
45.455
15.23
0.00
35.80
2.24
807
808
2.949963
GCAAAGCCAATGGGATCCACTA
60.950
50.000
15.23
0.00
35.80
2.74
808
809
1.856629
CAAAGCCAATGGGATCCACT
58.143
50.000
15.23
0.00
35.80
4.00
809
810
0.176449
GCAAAGCCAATGGGATCCAC
59.824
55.000
15.23
3.53
35.80
4.02
810
811
0.041535
AGCAAAGCCAATGGGATCCA
59.958
50.000
15.23
0.00
38.19
3.41
811
812
0.749049
GAGCAAAGCCAATGGGATCC
59.251
55.000
1.92
1.92
35.59
3.36
907
909
0.780637
AGATGAGGCGAGGGGATAGA
59.219
55.000
0.00
0.00
0.00
1.98
979
981
1.153469
GGAGCTCTTGAGGCTTCGG
60.153
63.158
14.64
0.00
40.40
4.30
989
991
0.033699
GGAAGCCATTGGGAGCTCTT
60.034
55.000
14.64
0.00
38.74
2.85
1407
1409
3.181450
CGATAAGATCCTTGGCCTCCTTT
60.181
47.826
3.32
0.00
0.00
3.11
1434
1436
2.304180
CTCCTTGAGCTTCTTTGGGAGA
59.696
50.000
11.18
0.00
40.68
3.71
1518
1520
3.014304
ACCTAGTCTCACGCTATGGAA
57.986
47.619
0.00
0.00
0.00
3.53
1616
1620
6.966632
GCGCACTAATCTCATATGAAACAAAA
59.033
34.615
6.90
0.00
0.00
2.44
1677
1687
6.522054
ACATCCGGTAAGTATACAAGATTGG
58.478
40.000
0.00
0.04
33.45
3.16
1690
1700
7.490962
TCTAAATAATGCAACATCCGGTAAG
57.509
36.000
0.00
0.00
0.00
2.34
1695
1705
7.206981
AGGAATCTAAATAATGCAACATCCG
57.793
36.000
0.00
0.00
0.00
4.18
1791
1802
2.158827
TGCCGCTCTATTGCTCCAATAA
60.159
45.455
0.00
0.00
36.14
1.40
1829
1840
7.233389
ACTGAGAGCTATTACAGACTCAAAA
57.767
36.000
13.27
0.00
38.12
2.44
1996
2279
2.143876
ATGATTAGCAACACCCCACC
57.856
50.000
0.00
0.00
0.00
4.61
1998
2281
4.308526
TGTAATGATTAGCAACACCCCA
57.691
40.909
0.00
0.00
0.00
4.96
2057
2340
7.823799
TCATGTAGCATTCTTGAACAATGTAGA
59.176
33.333
0.00
0.00
34.27
2.59
2139
2434
1.039233
CATTGCTCCATGTGGGGGAC
61.039
60.000
0.29
0.00
41.01
4.46
2303
2601
2.687935
TGTGAAGCCTGAAGTTTTCCAC
59.312
45.455
0.00
0.00
0.00
4.02
2308
2606
2.092429
TCCAGTGTGAAGCCTGAAGTTT
60.092
45.455
0.00
0.00
0.00
2.66
2448
2749
9.770097
TTCATTTGTTTGGCATTATACTTCAAA
57.230
25.926
0.00
0.00
0.00
2.69
2484
2785
5.993106
GGTACAGCCTAAAAAGCATAGAG
57.007
43.478
0.00
0.00
0.00
2.43
2496
2797
5.737413
GCTGACTGCAAAGGTACAGCCTA
62.737
52.174
0.00
0.00
44.12
3.93
2498
2799
1.160137
CTGACTGCAAAGGTACAGCC
58.840
55.000
0.00
0.00
37.42
4.85
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.