Multiple sequence alignment - TraesCS3B01G268700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G268700 chr3B 100.000 4198 0 0 972 5169 432830441 432834638 0.000000e+00 7753
1 TraesCS3B01G268700 chr3B 100.000 656 0 0 1 656 432829470 432830125 0.000000e+00 1212
2 TraesCS3B01G268700 chr3B 97.297 518 14 0 4652 5169 778176038 778175521 0.000000e+00 880
3 TraesCS3B01G268700 chr3B 95.785 522 17 2 4652 5169 634767991 634768511 0.000000e+00 837
4 TraesCS3B01G268700 chr3B 93.881 523 26 4 4652 5169 372198651 372198130 0.000000e+00 784
5 TraesCS3B01G268700 chr3B 86.739 641 83 2 18 656 460116763 460117403 0.000000e+00 712
6 TraesCS3B01G268700 chr3D 93.186 1996 70 28 2355 4310 333514401 333512432 0.000000e+00 2872
7 TraesCS3B01G268700 chr3D 94.273 1397 58 18 973 2356 333515855 333514468 0.000000e+00 2117
8 TraesCS3B01G268700 chr3A 93.991 1631 47 25 2376 3982 451717166 451715563 0.000000e+00 2422
9 TraesCS3B01G268700 chr3A 94.981 1295 50 9 1067 2356 451718702 451717418 0.000000e+00 2017
10 TraesCS3B01G268700 chr3A 88.316 659 74 3 1 656 92246860 92247518 0.000000e+00 787
11 TraesCS3B01G268700 chr3A 91.379 290 23 2 4362 4650 451712545 451712257 3.750000e-106 396
12 TraesCS3B01G268700 chr3A 83.333 366 26 21 3980 4310 451712912 451712547 6.500000e-79 305
13 TraesCS3B01G268700 chr3A 90.566 106 9 1 972 1076 451720405 451720300 6.980000e-29 139
14 TraesCS3B01G268700 chr1A 94.037 654 37 2 4 656 494035578 494034926 0.000000e+00 990
15 TraesCS3B01G268700 chr6B 94.828 522 22 2 4652 5169 454068880 454069400 0.000000e+00 809
16 TraesCS3B01G268700 chr6B 94.434 521 26 2 4652 5169 156919236 156919756 0.000000e+00 798
17 TraesCS3B01G268700 chr6B 90.822 523 48 0 1 523 103969001 103969523 0.000000e+00 701
18 TraesCS3B01G268700 chr6B 88.811 143 13 3 517 656 104102737 104102879 6.880000e-39 172
19 TraesCS3B01G268700 chrUn 94.798 519 26 1 4652 5169 118954903 118954385 0.000000e+00 808
20 TraesCS3B01G268700 chrUn 95.960 396 10 4 3135 3526 479525700 479526093 5.640000e-179 638
21 TraesCS3B01G268700 chr1B 94.615 520 26 2 4652 5169 16871583 16871064 0.000000e+00 804
22 TraesCS3B01G268700 chr2B 94.605 519 26 2 4652 5169 185571197 185570680 0.000000e+00 802
23 TraesCS3B01G268700 chr2B 97.778 450 9 1 208 656 627835836 627835387 0.000000e+00 774
24 TraesCS3B01G268700 chr2B 85.404 644 87 6 18 656 512590590 512589949 0.000000e+00 662
25 TraesCS3B01G268700 chr4B 94.444 522 25 4 4652 5169 662005470 662004949 0.000000e+00 800
26 TraesCS3B01G268700 chr7D 88.485 660 72 3 1 656 393957914 393958573 0.000000e+00 795
27 TraesCS3B01G268700 chr2D 87.823 657 76 3 4 656 417168645 417167989 0.000000e+00 767
28 TraesCS3B01G268700 chr4A 93.930 313 17 2 346 656 140848275 140847963 6.060000e-129 472
29 TraesCS3B01G268700 chr4A 95.062 162 8 0 224 385 140848438 140848277 6.640000e-64 255


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G268700 chr3B 432829470 432834638 5168 False 4482.5 7753 100.0000 1 5169 2 chr3B.!!$F3 5168
1 TraesCS3B01G268700 chr3B 778175521 778176038 517 True 880.0 880 97.2970 4652 5169 1 chr3B.!!$R2 517
2 TraesCS3B01G268700 chr3B 634767991 634768511 520 False 837.0 837 95.7850 4652 5169 1 chr3B.!!$F2 517
3 TraesCS3B01G268700 chr3B 372198130 372198651 521 True 784.0 784 93.8810 4652 5169 1 chr3B.!!$R1 517
4 TraesCS3B01G268700 chr3B 460116763 460117403 640 False 712.0 712 86.7390 18 656 1 chr3B.!!$F1 638
5 TraesCS3B01G268700 chr3D 333512432 333515855 3423 True 2494.5 2872 93.7295 973 4310 2 chr3D.!!$R1 3337
6 TraesCS3B01G268700 chr3A 451712257 451720405 8148 True 1055.8 2422 90.8500 972 4650 5 chr3A.!!$R1 3678
7 TraesCS3B01G268700 chr3A 92246860 92247518 658 False 787.0 787 88.3160 1 656 1 chr3A.!!$F1 655
8 TraesCS3B01G268700 chr1A 494034926 494035578 652 True 990.0 990 94.0370 4 656 1 chr1A.!!$R1 652
9 TraesCS3B01G268700 chr6B 454068880 454069400 520 False 809.0 809 94.8280 4652 5169 1 chr6B.!!$F4 517
10 TraesCS3B01G268700 chr6B 156919236 156919756 520 False 798.0 798 94.4340 4652 5169 1 chr6B.!!$F3 517
11 TraesCS3B01G268700 chr6B 103969001 103969523 522 False 701.0 701 90.8220 1 523 1 chr6B.!!$F1 522
12 TraesCS3B01G268700 chrUn 118954385 118954903 518 True 808.0 808 94.7980 4652 5169 1 chrUn.!!$R1 517
13 TraesCS3B01G268700 chr1B 16871064 16871583 519 True 804.0 804 94.6150 4652 5169 1 chr1B.!!$R1 517
14 TraesCS3B01G268700 chr2B 185570680 185571197 517 True 802.0 802 94.6050 4652 5169 1 chr2B.!!$R1 517
15 TraesCS3B01G268700 chr2B 512589949 512590590 641 True 662.0 662 85.4040 18 656 1 chr2B.!!$R2 638
16 TraesCS3B01G268700 chr4B 662004949 662005470 521 True 800.0 800 94.4440 4652 5169 1 chr4B.!!$R1 517
17 TraesCS3B01G268700 chr7D 393957914 393958573 659 False 795.0 795 88.4850 1 656 1 chr7D.!!$F1 655
18 TraesCS3B01G268700 chr2D 417167989 417168645 656 True 767.0 767 87.8230 4 656 1 chr2D.!!$R1 652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
561 564 1.040339 TGTGTTGGGGTGTTTGCCTC 61.040 55.0 0.00 0.0 0.00 4.70 F
1044 1051 0.246635 ACGGAATCGACCAACCAGAG 59.753 55.0 0.00 0.0 40.11 3.35 F
1634 3255 0.039764 GGTAAGGCTTGCCCCTTCTT 59.960 55.0 22.28 0.0 43.94 2.52 F
2135 3759 2.102588 GTCGGGTATGCTATCAGGTTGT 59.897 50.0 0.00 0.0 0.00 3.32 F
3500 5382 0.036010 TGCTCCAGCTAAGGTGCTTC 60.036 55.0 15.66 0.0 45.81 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1401 3015 0.104304 ATAAGCTTCGATTCGCCGGT 59.896 50.0 0.00 0.0 0.00 5.28 R
2569 4425 1.156736 AACTTCTGCATGTACGGTGC 58.843 50.0 14.20 14.2 42.81 5.01 R
3387 5269 0.317160 TTCAGGCACTCACTGGTACG 59.683 55.0 0.00 0.0 34.60 3.67 R
3892 5779 0.037734 GGAAGTCATGGTTTCCGGGT 59.962 55.0 0.00 0.0 34.09 5.28 R
4334 8917 0.112995 AGAAGCTTGGCCATTCCACA 59.887 50.0 6.09 0.0 46.55 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
165 166 1.129251 CTGCATGCTTTACGTGTCTGG 59.871 52.381 20.33 0.00 37.62 3.86
228 229 1.609783 GCTAGGGAGGTGTGGCATT 59.390 57.895 0.00 0.00 0.00 3.56
257 258 3.308705 GCTTTGGGCTTGCAGGCT 61.309 61.111 21.07 0.00 41.09 4.58
278 279 1.097547 CCATTCCGGATGTGCAGGAC 61.098 60.000 4.15 0.00 40.76 3.85
406 407 4.496895 GCGTAACGCGAGAGTCTTTAATAA 59.503 41.667 15.93 0.00 44.55 1.40
478 479 3.637273 GCGGGAGTGGAAGGTGGT 61.637 66.667 0.00 0.00 0.00 4.16
561 564 1.040339 TGTGTTGGGGTGTTTGCCTC 61.040 55.000 0.00 0.00 0.00 4.70
1044 1051 0.246635 ACGGAATCGACCAACCAGAG 59.753 55.000 0.00 0.00 40.11 3.35
1257 2871 2.438795 GTCTCGTCGGAGCCTCCT 60.439 66.667 9.52 0.00 40.26 3.69
1401 3015 1.489649 TGGGTTCCAAGTAAACACCGA 59.510 47.619 0.00 0.00 0.00 4.69
1422 3036 1.070577 CCGGCGAATCGAAGCTTATTG 60.071 52.381 9.30 0.00 0.00 1.90
1423 3037 1.593006 CGGCGAATCGAAGCTTATTGT 59.407 47.619 6.91 0.00 0.00 2.71
1424 3038 2.347661 CGGCGAATCGAAGCTTATTGTC 60.348 50.000 6.91 0.00 0.00 3.18
1425 3039 2.607635 GGCGAATCGAAGCTTATTGTCA 59.392 45.455 6.91 0.00 0.00 3.58
1426 3040 3.544244 GGCGAATCGAAGCTTATTGTCAC 60.544 47.826 6.91 0.00 0.00 3.67
1428 3042 4.260375 GCGAATCGAAGCTTATTGTCACAT 60.260 41.667 6.91 0.00 0.00 3.21
1566 3187 1.300971 GAGCTGATGCGTGCCTTCAA 61.301 55.000 0.00 0.00 45.42 2.69
1583 3204 4.685165 CCTTCAACGATGCTAGAGATGATG 59.315 45.833 0.00 0.00 0.00 3.07
1591 3212 4.511617 TGCTAGAGATGATGGTTCGATC 57.488 45.455 0.00 0.00 0.00 3.69
1634 3255 0.039764 GGTAAGGCTTGCCCCTTCTT 59.960 55.000 22.28 0.00 43.94 2.52
1707 3328 6.639279 TGTTGTATATGTACGAATCGATGTGG 59.361 38.462 10.55 0.00 33.36 4.17
1708 3329 6.563222 TGTATATGTACGAATCGATGTGGA 57.437 37.500 10.55 0.00 33.36 4.02
1709 3330 6.376177 TGTATATGTACGAATCGATGTGGAC 58.624 40.000 10.55 1.73 33.36 4.02
1710 3331 5.707242 ATATGTACGAATCGATGTGGACT 57.293 39.130 10.55 3.20 0.00 3.85
1719 3340 5.923114 CGAATCGATGTGGACTGAATCTTAT 59.077 40.000 0.00 0.00 0.00 1.73
1720 3341 7.084486 CGAATCGATGTGGACTGAATCTTATA 58.916 38.462 0.00 0.00 0.00 0.98
1875 3496 3.988379 TTCCTCTGACATTTTGCACAC 57.012 42.857 0.00 0.00 0.00 3.82
1894 3515 3.386726 ACACAGTGACCTACTTGCTTACA 59.613 43.478 7.81 0.00 37.60 2.41
1931 3552 3.600448 ATGCTATGGCCTATTGGTGTT 57.400 42.857 3.32 0.00 37.74 3.32
1932 3553 4.722526 ATGCTATGGCCTATTGGTGTTA 57.277 40.909 3.32 0.00 37.74 2.41
1933 3554 4.085357 TGCTATGGCCTATTGGTGTTAG 57.915 45.455 3.32 0.00 37.74 2.34
1934 3555 3.458118 TGCTATGGCCTATTGGTGTTAGT 59.542 43.478 3.32 0.00 37.74 2.24
1936 3557 4.686122 GCTATGGCCTATTGGTGTTAGTGT 60.686 45.833 3.32 0.00 35.27 3.55
1940 3561 4.041815 TGGCCTATTGGTGTTAGTGTTGTA 59.958 41.667 3.32 0.00 35.27 2.41
2118 3742 5.296531 TCATCCAACATATTTGTCATGTCGG 59.703 40.000 0.00 0.00 35.58 4.79
2135 3759 2.102588 GTCGGGTATGCTATCAGGTTGT 59.897 50.000 0.00 0.00 0.00 3.32
2241 3865 2.241176 TGGTCCAAAGGTGTTTCTCTGT 59.759 45.455 0.00 0.00 0.00 3.41
2244 3868 2.777692 TCCAAAGGTGTTTCTCTGTCCT 59.222 45.455 0.00 0.00 0.00 3.85
2276 3900 7.201732 GCTTCTTGCTTCCTAGTATGCAAATTA 60.202 37.037 9.41 0.00 43.45 1.40
2328 3952 3.988819 TGTTGCCAGTTTTAAATCCTGC 58.011 40.909 8.99 5.64 0.00 4.85
2334 3958 4.866486 GCCAGTTTTAAATCCTGCATGAAG 59.134 41.667 0.00 0.00 0.00 3.02
2360 4053 3.743396 CAGTCTCCTTTTGAAGTTCTCCG 59.257 47.826 4.17 0.00 0.00 4.63
2366 4059 3.004734 CCTTTTGAAGTTCTCCGCACAAT 59.995 43.478 4.17 0.00 0.00 2.71
2375 4068 2.554142 TCTCCGCACAATCTTAGCATG 58.446 47.619 0.00 0.00 0.00 4.06
2383 4239 4.092821 GCACAATCTTAGCATGTACAACGA 59.907 41.667 0.00 0.00 0.00 3.85
2408 4264 3.788227 TTATGCACCCCTGATACCATC 57.212 47.619 0.00 0.00 0.00 3.51
2543 4399 7.775053 AAATCAGTAATCCAGCCTTTTGTAA 57.225 32.000 0.00 0.00 0.00 2.41
2552 4408 6.374417 TCCAGCCTTTTGTAATCTTACTCT 57.626 37.500 2.11 0.00 34.77 3.24
2569 4425 8.873215 TCTTACTCTGAGTTCAACTAAAACTG 57.127 34.615 16.53 0.00 37.10 3.16
2570 4426 5.993106 ACTCTGAGTTCAACTAAAACTGC 57.007 39.130 4.06 0.00 37.10 4.40
2571 4427 5.428253 ACTCTGAGTTCAACTAAAACTGCA 58.572 37.500 4.06 0.00 37.10 4.41
2572 4428 5.294552 ACTCTGAGTTCAACTAAAACTGCAC 59.705 40.000 4.06 0.00 37.10 4.57
2573 4429 4.574828 TCTGAGTTCAACTAAAACTGCACC 59.425 41.667 0.00 0.00 37.10 5.01
2574 4430 3.311322 TGAGTTCAACTAAAACTGCACCG 59.689 43.478 0.00 0.00 37.10 4.94
2575 4431 3.275999 AGTTCAACTAAAACTGCACCGT 58.724 40.909 0.00 0.00 35.68 4.83
2576 4432 4.444536 AGTTCAACTAAAACTGCACCGTA 58.555 39.130 0.00 0.00 35.68 4.02
2577 4433 4.271776 AGTTCAACTAAAACTGCACCGTAC 59.728 41.667 0.00 0.00 35.68 3.67
2578 4434 3.794717 TCAACTAAAACTGCACCGTACA 58.205 40.909 0.00 0.00 0.00 2.90
2579 4435 4.382291 TCAACTAAAACTGCACCGTACAT 58.618 39.130 0.00 0.00 0.00 2.29
2580 4436 4.212425 TCAACTAAAACTGCACCGTACATG 59.788 41.667 0.00 0.00 0.00 3.21
2581 4437 2.482721 ACTAAAACTGCACCGTACATGC 59.517 45.455 11.32 11.32 43.68 4.06
2721 4578 7.942341 AGCCCCGTTTAATGATTTATAATCAGA 59.058 33.333 7.98 0.00 0.00 3.27
2792 4656 5.664870 GTGTTATGCACGCATTTTTCTAC 57.335 39.130 10.23 1.07 38.45 2.59
2856 4722 8.711170 TCCTGAAGGTGTATTACTTTAATAGGG 58.289 37.037 0.00 0.00 36.34 3.53
2982 4864 6.261603 ACACTACCAGTTTAAAGTTTACAGGC 59.738 38.462 0.00 0.00 0.00 4.85
2986 4868 4.546570 CAGTTTAAAGTTTACAGGCAGCC 58.453 43.478 1.84 1.84 0.00 4.85
2992 4874 3.790089 AGTTTACAGGCAGCCTACTTT 57.210 42.857 15.64 1.12 29.64 2.66
3000 4882 4.832823 ACAGGCAGCCTACTTTACATTTTT 59.167 37.500 15.64 0.00 29.64 1.94
3109 4991 4.923893 TCTGTTTGCTTCATGTTTGACTG 58.076 39.130 0.00 0.00 0.00 3.51
3127 5009 3.943381 GACTGGTGATCAATTGAGATGCA 59.057 43.478 14.54 6.64 0.00 3.96
3245 5127 2.962421 ACCGTGGAACAATTTTGGTCAT 59.038 40.909 10.31 0.00 46.59 3.06
3387 5269 3.802948 ATGGGACTCGTCAATGTAGTC 57.197 47.619 0.00 0.00 39.12 2.59
3403 5285 0.539901 AGTCGTACCAGTGAGTGCCT 60.540 55.000 0.00 0.00 0.00 4.75
3416 5298 6.543465 CCAGTGAGTGCCTGAATTATTGATTA 59.457 38.462 0.00 0.00 31.38 1.75
3418 5300 6.543831 AGTGAGTGCCTGAATTATTGATTACC 59.456 38.462 0.00 0.00 0.00 2.85
3500 5382 0.036010 TGCTCCAGCTAAGGTGCTTC 60.036 55.000 15.66 0.00 45.81 3.86
3513 5399 2.106511 AGGTGCTTCAACCATGTACTGT 59.893 45.455 0.00 0.00 43.20 3.55
3572 5458 1.606668 GAAACTGTGAAATGGTGCCGA 59.393 47.619 0.00 0.00 0.00 5.54
3672 5559 7.410174 TGGTCTTCAGGTATTAATTTGTGGAT 58.590 34.615 0.00 0.00 0.00 3.41
3714 5601 2.051334 TGGTCTTGTTCAACTGGTGG 57.949 50.000 0.00 0.00 0.00 4.61
3760 5647 8.195436 ACATACACACATACTATGTCCTTGTAC 58.805 37.037 12.80 0.00 42.70 2.90
3785 5672 1.530323 AATGTAACGGGACTTGTGCC 58.470 50.000 0.97 0.97 0.00 5.01
3786 5673 0.398696 ATGTAACGGGACTTGTGCCA 59.601 50.000 11.65 0.00 0.00 4.92
3816 5703 1.225855 GCGGGAATGCGACATTGATA 58.774 50.000 9.33 0.00 0.00 2.15
3849 5736 3.891366 CTGAAGAGGCCAAAGAAGGAAAA 59.109 43.478 5.01 0.00 0.00 2.29
3892 5779 2.813754 CGCCCTGATTTCTCAAAGTTCA 59.186 45.455 0.00 0.00 0.00 3.18
3913 5800 1.340991 CCCGGAAACCATGACTTCCAT 60.341 52.381 19.74 0.00 41.10 3.41
3978 8518 1.373570 CCTCCTCGATTTGCAGGAAC 58.626 55.000 0.00 0.00 38.39 3.62
4002 8542 1.548081 CACACATTTGCCATCTCCCA 58.452 50.000 0.00 0.00 0.00 4.37
4012 8552 1.701847 GCCATCTCCCATGGATAGTGT 59.298 52.381 15.22 1.55 41.64 3.55
4022 8565 3.334691 CATGGATAGTGTGGACGTTGTT 58.665 45.455 0.00 0.00 0.00 2.83
4072 8615 1.250328 TCTGTTGCTGGAAATGCAGG 58.750 50.000 4.06 0.00 41.71 4.85
4094 8637 5.355910 AGGTTGTGTACACGAAAGAAAATGT 59.644 36.000 17.65 0.00 0.00 2.71
4179 8722 4.708421 CCAATGTTCTCCATCAGTTTGGAT 59.292 41.667 0.00 0.00 44.66 3.41
4186 8729 5.392995 TCTCCATCAGTTTGGATTTTTGGA 58.607 37.500 0.00 0.00 44.66 3.53
4192 8735 7.279313 CCATCAGTTTGGATTTTTGGATGAATC 59.721 37.037 0.00 0.00 39.25 2.52
4271 8845 2.265739 GTGGATGCGAGAGTGCCA 59.734 61.111 0.00 0.00 0.00 4.92
4310 8893 2.822255 GCGTGTGTGTGTGTGGGT 60.822 61.111 0.00 0.00 0.00 4.51
4312 8895 2.468670 CGTGTGTGTGTGTGGGTGG 61.469 63.158 0.00 0.00 0.00 4.61
4313 8896 2.118404 GTGTGTGTGTGTGGGTGGG 61.118 63.158 0.00 0.00 0.00 4.61
4314 8897 2.274104 GTGTGTGTGTGGGTGGGT 59.726 61.111 0.00 0.00 0.00 4.51
4315 8898 2.118404 GTGTGTGTGTGGGTGGGTG 61.118 63.158 0.00 0.00 0.00 4.61
4316 8899 2.518349 GTGTGTGTGGGTGGGTGG 60.518 66.667 0.00 0.00 0.00 4.61
4317 8900 3.814906 TGTGTGTGGGTGGGTGGG 61.815 66.667 0.00 0.00 0.00 4.61
4318 8901 3.816090 GTGTGTGGGTGGGTGGGT 61.816 66.667 0.00 0.00 0.00 4.51
4319 8902 3.814906 TGTGTGGGTGGGTGGGTG 61.815 66.667 0.00 0.00 0.00 4.61
4320 8903 4.596585 GTGTGGGTGGGTGGGTGG 62.597 72.222 0.00 0.00 0.00 4.61
4338 8921 2.787118 GGGGGAGGGGTATATGTGG 58.213 63.158 0.00 0.00 0.00 4.17
4339 8922 0.195096 GGGGGAGGGGTATATGTGGA 59.805 60.000 0.00 0.00 0.00 4.02
4340 8923 1.416907 GGGGGAGGGGTATATGTGGAA 60.417 57.143 0.00 0.00 0.00 3.53
4341 8924 2.644151 GGGGAGGGGTATATGTGGAAT 58.356 52.381 0.00 0.00 0.00 3.01
4342 8925 2.308866 GGGGAGGGGTATATGTGGAATG 59.691 54.545 0.00 0.00 0.00 2.67
4343 8926 2.308866 GGGAGGGGTATATGTGGAATGG 59.691 54.545 0.00 0.00 0.00 3.16
4344 8927 2.290960 GGAGGGGTATATGTGGAATGGC 60.291 54.545 0.00 0.00 0.00 4.40
4345 8928 1.710809 AGGGGTATATGTGGAATGGCC 59.289 52.381 0.00 0.00 37.10 5.36
4346 8929 1.427368 GGGGTATATGTGGAATGGCCA 59.573 52.381 8.56 8.56 46.96 5.36
4354 8937 3.271250 TGGAATGGCCAAGCTTCTC 57.729 52.632 10.96 4.41 45.87 2.87
4355 8938 0.323725 TGGAATGGCCAAGCTTCTCC 60.324 55.000 10.96 9.83 45.87 3.71
4356 8939 0.323725 GGAATGGCCAAGCTTCTCCA 60.324 55.000 10.96 16.11 36.34 3.86
4357 8940 1.687368 GGAATGGCCAAGCTTCTCCAT 60.687 52.381 10.96 18.59 40.77 3.41
4358 8941 2.242882 AATGGCCAAGCTTCTCCATT 57.757 45.000 25.20 25.20 42.61 3.16
4359 8942 3.290710 GAATGGCCAAGCTTCTCCATTA 58.709 45.455 28.33 7.71 46.08 1.90
4360 8943 2.425143 TGGCCAAGCTTCTCCATTAG 57.575 50.000 0.61 0.00 0.00 1.73
4371 8954 4.330347 GCTTCTCCATTAGTTCGGACTTTC 59.670 45.833 0.00 0.00 37.33 2.62
4372 8955 5.477607 TTCTCCATTAGTTCGGACTTTCA 57.522 39.130 0.00 0.00 37.33 2.69
4374 8957 4.081642 TCTCCATTAGTTCGGACTTTCAGG 60.082 45.833 0.00 0.00 37.33 3.86
4403 8986 6.704050 ACTGGTTGGTGCATTAAATTTTACAC 59.296 34.615 0.00 0.31 0.00 2.90
4429 9012 2.436417 TGTTTGTGCCTAATCAGCCTC 58.564 47.619 0.00 0.00 0.00 4.70
4448 9031 3.616956 TCAGGATGAGGTTCACATCAC 57.383 47.619 0.00 0.00 42.56 3.06
4455 9038 2.224281 TGAGGTTCACATCACCACTGAC 60.224 50.000 0.00 0.00 36.67 3.51
4470 9053 9.685276 ATCACCACTGACATAAAATTTAGATGA 57.315 29.630 16.15 6.27 0.00 2.92
4545 9129 5.409826 AGTTATTCTACTTTGTGCTGCTCAC 59.590 40.000 3.57 3.24 45.82 3.51
4560 9144 4.201666 GCTGCTCACGAAGTTGAATCTTAG 60.202 45.833 0.00 0.00 41.61 2.18
4562 9146 4.923871 TGCTCACGAAGTTGAATCTTAGTC 59.076 41.667 0.00 0.00 41.61 2.59
4589 9173 2.163818 TTGTTTGGCTACGAGTGAGG 57.836 50.000 0.00 0.00 0.00 3.86
4592 9176 0.242825 TTTGGCTACGAGTGAGGTCG 59.757 55.000 0.00 0.00 45.76 4.79
4605 9189 3.705072 AGTGAGGTCGGTTTCCTATTAGG 59.295 47.826 3.07 3.07 35.20 2.69
4609 9193 4.613437 AGGTCGGTTTCCTATTAGGTACA 58.387 43.478 9.57 0.00 36.53 2.90
4646 9230 4.807304 CCATTATTGGAAGCTTTGTCATGC 59.193 41.667 0.00 0.00 46.92 4.06
4833 9428 7.040201 AGTGAACATAAACTAGTAGGTCGACAA 60.040 37.037 18.91 1.22 0.00 3.18
5055 9650 2.437651 TGGTCATCTTATTGCGGATGGA 59.562 45.455 0.00 0.00 39.57 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.049248 GGCACCACAATTGCACCG 60.049 61.111 5.05 0.00 42.12 4.94
28 29 4.082125 AGCCCAACTCTTCCAAATACAAG 58.918 43.478 0.00 0.00 0.00 3.16
165 166 3.120041 GCTCTGCGTTATCTTCCTCTTC 58.880 50.000 0.00 0.00 0.00 2.87
228 229 3.042871 GCCCAAAGCATCAAACATGAA 57.957 42.857 0.00 0.00 42.97 2.57
257 258 0.180171 CCTGCACATCCGGAATGGTA 59.820 55.000 9.01 0.00 39.90 3.25
340 341 1.868997 GCAATCACCACCGTGTCAG 59.131 57.895 0.00 0.00 41.09 3.51
406 407 3.274288 GCATTAAGCTGCTGGTTAGTCT 58.726 45.455 13.81 2.96 41.15 3.24
478 479 2.601868 GTCCTCCTCCTAGGCCGA 59.398 66.667 2.96 0.29 36.51 5.54
561 564 0.322997 TGAATACAGGCAAACCCCCG 60.323 55.000 0.00 0.00 36.11 5.73
1269 2883 2.511600 CCATCCTCGTCCGTTGCC 60.512 66.667 0.00 0.00 0.00 4.52
1272 2886 0.249398 CCTTTCCATCCTCGTCCGTT 59.751 55.000 0.00 0.00 0.00 4.44
1401 3015 0.104304 ATAAGCTTCGATTCGCCGGT 59.896 50.000 0.00 0.00 0.00 5.28
1422 3036 4.002982 TGCTAGAATGGTGTGAATGTGAC 58.997 43.478 0.00 0.00 0.00 3.67
1423 3037 4.002982 GTGCTAGAATGGTGTGAATGTGA 58.997 43.478 0.00 0.00 0.00 3.58
1424 3038 4.005650 AGTGCTAGAATGGTGTGAATGTG 58.994 43.478 0.00 0.00 0.00 3.21
1425 3039 4.292186 AGTGCTAGAATGGTGTGAATGT 57.708 40.909 0.00 0.00 0.00 2.71
1426 3040 5.178061 TGTAGTGCTAGAATGGTGTGAATG 58.822 41.667 0.00 0.00 0.00 2.67
1428 3042 4.882842 TGTAGTGCTAGAATGGTGTGAA 57.117 40.909 0.00 0.00 0.00 3.18
1566 3187 3.304996 CGAACCATCATCTCTAGCATCGT 60.305 47.826 0.00 0.00 0.00 3.73
1583 3204 2.295253 ATGACAACTCCGATCGAACC 57.705 50.000 18.66 0.00 0.00 3.62
1634 3255 9.280174 ACGATAAAATTTTGTTGTTCCTCTAGA 57.720 29.630 13.76 0.00 0.00 2.43
1664 3285 4.202461 ACAACACACCATGACCAGAACTAT 60.202 41.667 0.00 0.00 0.00 2.12
1710 3331 9.740239 GCAGCAAAAAGATCAATATAAGATTCA 57.260 29.630 0.00 0.00 0.00 2.57
1719 3340 4.082081 CCCTGTGCAGCAAAAAGATCAATA 60.082 41.667 0.00 0.00 0.00 1.90
1720 3341 3.306502 CCCTGTGCAGCAAAAAGATCAAT 60.307 43.478 0.00 0.00 0.00 2.57
1733 3354 1.751927 GCCTTGGATCCCTGTGCAG 60.752 63.158 9.90 0.00 0.00 4.41
1875 3496 4.258702 ACTGTAAGCAAGTAGGTCACTG 57.741 45.455 0.00 0.00 35.42 3.66
1894 3515 6.701841 CCATAGCATAACAATTCGTCTGTACT 59.298 38.462 0.00 0.00 0.00 2.73
1931 3552 4.276678 ACGCTGAACAGTACTACAACACTA 59.723 41.667 0.00 0.00 0.00 2.74
1932 3553 3.067742 ACGCTGAACAGTACTACAACACT 59.932 43.478 0.00 0.00 0.00 3.55
1933 3554 3.378339 ACGCTGAACAGTACTACAACAC 58.622 45.455 0.00 0.00 0.00 3.32
1934 3555 3.067040 TGACGCTGAACAGTACTACAACA 59.933 43.478 0.00 0.00 0.00 3.33
1936 3557 3.994204 TGACGCTGAACAGTACTACAA 57.006 42.857 0.00 0.00 0.00 2.41
1940 3561 4.258702 AGAAATGACGCTGAACAGTACT 57.741 40.909 3.77 0.00 0.00 2.73
2003 3627 2.361789 GCGCCTAATTTGTACCTGGAA 58.638 47.619 0.00 0.00 0.00 3.53
2108 3732 2.962421 TGATAGCATACCCGACATGACA 59.038 45.455 0.00 0.00 0.00 3.58
2112 3736 2.609747 ACCTGATAGCATACCCGACAT 58.390 47.619 0.00 0.00 0.00 3.06
2116 3740 2.872245 CAACAACCTGATAGCATACCCG 59.128 50.000 0.00 0.00 0.00 5.28
2118 3742 3.886123 ACCAACAACCTGATAGCATACC 58.114 45.455 0.00 0.00 0.00 2.73
2135 3759 1.959985 CACCACCAACTGCATAACCAA 59.040 47.619 0.00 0.00 0.00 3.67
2360 4053 4.092821 TCGTTGTACATGCTAAGATTGTGC 59.907 41.667 0.00 0.00 0.00 4.57
2408 4264 2.820787 AGAACTCACTAGAAGTCCACCG 59.179 50.000 0.00 0.00 0.00 4.94
2413 4269 6.757010 TGTTTTGTCAGAACTCACTAGAAGTC 59.243 38.462 7.67 0.00 0.00 3.01
2466 4322 2.277084 GTCAGTCTTGACGTTGGTGTT 58.723 47.619 0.00 0.00 43.84 3.32
2533 4389 7.387948 TGAACTCAGAGTAAGATTACAAAAGGC 59.612 37.037 2.64 0.00 36.12 4.35
2543 4399 9.482627 CAGTTTTAGTTGAACTCAGAGTAAGAT 57.517 33.333 2.64 0.00 35.26 2.40
2552 4408 3.311322 CGGTGCAGTTTTAGTTGAACTCA 59.689 43.478 0.00 0.00 35.26 3.41
2569 4425 1.156736 AACTTCTGCATGTACGGTGC 58.843 50.000 14.20 14.20 42.81 5.01
2570 4426 5.351465 AGAATAAACTTCTGCATGTACGGTG 59.649 40.000 0.00 0.00 0.00 4.94
2571 4427 5.488341 AGAATAAACTTCTGCATGTACGGT 58.512 37.500 0.00 0.00 0.00 4.83
2572 4428 6.092122 TCAAGAATAAACTTCTGCATGTACGG 59.908 38.462 0.00 0.00 0.00 4.02
2573 4429 7.060600 TCAAGAATAAACTTCTGCATGTACG 57.939 36.000 0.00 0.00 0.00 3.67
2574 4430 9.846248 AATTCAAGAATAAACTTCTGCATGTAC 57.154 29.630 0.00 0.00 0.00 2.90
2575 4431 9.844790 CAATTCAAGAATAAACTTCTGCATGTA 57.155 29.630 0.00 0.00 0.00 2.29
2576 4432 7.330208 GCAATTCAAGAATAAACTTCTGCATGT 59.670 33.333 7.93 0.00 0.00 3.21
2577 4433 7.544566 AGCAATTCAAGAATAAACTTCTGCATG 59.455 33.333 12.92 0.00 0.00 4.06
2578 4434 7.609056 AGCAATTCAAGAATAAACTTCTGCAT 58.391 30.769 12.92 0.81 0.00 3.96
2579 4435 6.985117 AGCAATTCAAGAATAAACTTCTGCA 58.015 32.000 12.92 0.00 0.00 4.41
2580 4436 6.250104 CGAGCAATTCAAGAATAAACTTCTGC 59.750 38.462 0.00 1.18 0.00 4.26
2581 4437 6.744537 CCGAGCAATTCAAGAATAAACTTCTG 59.255 38.462 0.00 0.00 0.00 3.02
2582 4438 6.127897 CCCGAGCAATTCAAGAATAAACTTCT 60.128 38.462 0.00 0.00 0.00 2.85
2583 4439 6.030228 CCCGAGCAATTCAAGAATAAACTTC 58.970 40.000 0.00 0.00 0.00 3.01
2584 4440 5.105756 CCCCGAGCAATTCAAGAATAAACTT 60.106 40.000 0.00 0.00 0.00 2.66
2585 4441 4.399303 CCCCGAGCAATTCAAGAATAAACT 59.601 41.667 0.00 0.00 0.00 2.66
2586 4442 4.398044 TCCCCGAGCAATTCAAGAATAAAC 59.602 41.667 0.00 0.00 0.00 2.01
2792 4656 5.818136 TCAAATTTGAATAGAGGAAGCCG 57.182 39.130 18.45 0.00 33.55 5.52
2866 4732 5.938125 ACCTGTGAGCACGTATTTCTTAAAT 59.062 36.000 0.00 0.00 34.90 1.40
2980 4862 4.462834 AGGAAAAATGTAAAGTAGGCTGCC 59.537 41.667 11.65 11.65 0.00 4.85
2982 4864 6.431234 ACAGAGGAAAAATGTAAAGTAGGCTG 59.569 38.462 0.00 0.00 0.00 4.85
2992 4874 6.647334 TGCAAATCACAGAGGAAAAATGTA 57.353 33.333 0.00 0.00 0.00 2.29
3000 4882 3.340928 CTGTCATGCAAATCACAGAGGA 58.659 45.455 10.61 0.00 38.90 3.71
3091 4973 3.698539 TCACCAGTCAAACATGAAGCAAA 59.301 39.130 0.00 0.00 0.00 3.68
3109 4991 4.913335 ATGTGCATCTCAATTGATCACC 57.087 40.909 8.96 0.00 0.00 4.02
3176 5058 2.530151 TCCCCACTTGGCAGCTCT 60.530 61.111 0.00 0.00 0.00 4.09
3177 5059 2.045536 CTCCCCACTTGGCAGCTC 60.046 66.667 0.00 0.00 0.00 4.09
3387 5269 0.317160 TTCAGGCACTCACTGGTACG 59.683 55.000 0.00 0.00 34.60 3.67
3416 5298 9.452287 TGCCTAATAAGTAGTTTTATTTTCGGT 57.548 29.630 0.00 0.00 35.47 4.69
3454 5336 3.696051 GCAACCTGCATCCTAGATGAAAA 59.304 43.478 8.74 0.00 44.26 2.29
3484 5366 1.271379 GGTTGAAGCACCTTAGCTGGA 60.271 52.381 0.00 0.00 45.89 3.86
3500 5382 7.066887 TGCAAAGGATATAACAGTACATGGTTG 59.933 37.037 0.00 0.00 0.00 3.77
3572 5458 5.070685 GTGGGACTGTTCCTTAAGATTTGT 58.929 41.667 6.69 0.00 42.38 2.83
3672 5559 6.475076 CCATGATTCGTTTGACTTTTTGACAA 59.525 34.615 0.00 0.00 0.00 3.18
3714 5601 3.270877 GTGACATACAGGAACATCCCAC 58.729 50.000 0.00 0.00 37.19 4.61
3760 5647 5.007332 GCACAAGTCCCGTTACATTATTAGG 59.993 44.000 0.00 0.00 0.00 2.69
3816 5703 2.694109 GGCCTCTTCAGTACCGTAGAAT 59.306 50.000 0.00 0.00 0.00 2.40
3849 5736 1.392168 CGTCGTTCCATGTACGCATTT 59.608 47.619 11.49 0.00 38.81 2.32
3892 5779 0.037734 GGAAGTCATGGTTTCCGGGT 59.962 55.000 0.00 0.00 34.09 5.28
3978 8518 1.619827 AGATGGCAAATGTGTGGGTTG 59.380 47.619 0.00 0.00 0.00 3.77
4002 8542 3.695830 AACAACGTCCACACTATCCAT 57.304 42.857 0.00 0.00 0.00 3.41
4012 8552 4.449743 GCACTTTGTAGATAACAACGTCCA 59.550 41.667 0.00 0.00 44.70 4.02
4022 8565 9.039870 CAACAAAATTTTGGCACTTTGTAGATA 57.960 29.630 29.37 0.00 40.23 1.98
4072 8615 6.252281 TGACATTTTCTTTCGTGTACACAAC 58.748 36.000 24.98 0.00 0.00 3.32
4179 8722 3.068732 TGCACCAACGATTCATCCAAAAA 59.931 39.130 0.00 0.00 0.00 1.94
4186 8729 3.507233 AGTTTCATGCACCAACGATTCAT 59.493 39.130 0.00 0.00 0.00 2.57
4192 8735 3.958704 TGTAAAGTTTCATGCACCAACG 58.041 40.909 0.00 0.00 0.00 4.10
4271 8845 0.886563 GCACTCTTGCCTCAAATGCT 59.113 50.000 0.00 0.00 43.66 3.79
4320 8903 0.195096 TCCACATATACCCCTCCCCC 59.805 60.000 0.00 0.00 0.00 5.40
4321 8904 2.127651 TTCCACATATACCCCTCCCC 57.872 55.000 0.00 0.00 0.00 4.81
4322 8905 2.308866 CCATTCCACATATACCCCTCCC 59.691 54.545 0.00 0.00 0.00 4.30
4323 8906 2.290960 GCCATTCCACATATACCCCTCC 60.291 54.545 0.00 0.00 0.00 4.30
4324 8907 2.290960 GGCCATTCCACATATACCCCTC 60.291 54.545 0.00 0.00 34.01 4.30
4325 8908 1.710809 GGCCATTCCACATATACCCCT 59.289 52.381 0.00 0.00 34.01 4.79
4326 8909 1.427368 TGGCCATTCCACATATACCCC 59.573 52.381 0.00 0.00 40.72 4.95
4327 8910 2.969821 TGGCCATTCCACATATACCC 57.030 50.000 0.00 0.00 40.72 3.69
4328 8911 2.558359 GCTTGGCCATTCCACATATACC 59.442 50.000 6.09 0.00 46.55 2.73
4329 8912 3.490348 AGCTTGGCCATTCCACATATAC 58.510 45.455 6.09 0.00 46.55 1.47
4330 8913 3.882102 AGCTTGGCCATTCCACATATA 57.118 42.857 6.09 0.00 46.55 0.86
4331 8914 2.761786 AGCTTGGCCATTCCACATAT 57.238 45.000 6.09 0.00 46.55 1.78
4332 8915 2.025037 AGAAGCTTGGCCATTCCACATA 60.025 45.455 6.09 0.00 46.55 2.29
4333 8916 1.188863 GAAGCTTGGCCATTCCACAT 58.811 50.000 6.09 0.00 46.55 3.21
4334 8917 0.112995 AGAAGCTTGGCCATTCCACA 59.887 50.000 6.09 0.00 46.55 4.17
4335 8918 0.813821 GAGAAGCTTGGCCATTCCAC 59.186 55.000 6.09 1.47 46.55 4.02
4336 8919 0.323725 GGAGAAGCTTGGCCATTCCA 60.324 55.000 6.09 0.00 44.85 3.53
4337 8920 0.323725 TGGAGAAGCTTGGCCATTCC 60.324 55.000 6.09 8.05 0.00 3.01
4338 8921 1.772836 ATGGAGAAGCTTGGCCATTC 58.227 50.000 19.16 8.04 37.88 2.67
4339 8922 2.242882 AATGGAGAAGCTTGGCCATT 57.757 45.000 25.73 25.73 44.10 3.16
4340 8923 2.243221 ACTAATGGAGAAGCTTGGCCAT 59.757 45.455 19.16 19.16 42.66 4.40
4341 8924 1.635487 ACTAATGGAGAAGCTTGGCCA 59.365 47.619 16.71 16.71 34.45 5.36
4342 8925 2.426842 ACTAATGGAGAAGCTTGGCC 57.573 50.000 2.10 5.35 0.00 5.36
4343 8926 2.352960 CGAACTAATGGAGAAGCTTGGC 59.647 50.000 2.10 0.00 0.00 4.52
4344 8927 2.939103 CCGAACTAATGGAGAAGCTTGG 59.061 50.000 2.10 0.00 0.00 3.61
4345 8928 3.619038 GTCCGAACTAATGGAGAAGCTTG 59.381 47.826 2.10 0.00 34.21 4.01
4346 8929 3.515901 AGTCCGAACTAATGGAGAAGCTT 59.484 43.478 0.00 0.00 34.21 3.74
4347 8930 3.100671 AGTCCGAACTAATGGAGAAGCT 58.899 45.455 0.00 0.00 34.21 3.74
4348 8931 3.528597 AGTCCGAACTAATGGAGAAGC 57.471 47.619 0.00 0.00 34.21 3.86
4349 8932 5.479306 TGAAAGTCCGAACTAATGGAGAAG 58.521 41.667 0.00 0.00 33.48 2.85
4350 8933 5.477607 TGAAAGTCCGAACTAATGGAGAA 57.522 39.130 0.00 0.00 33.48 2.87
4351 8934 4.081642 CCTGAAAGTCCGAACTAATGGAGA 60.082 45.833 0.00 0.00 33.48 3.71
4352 8935 4.184629 CCTGAAAGTCCGAACTAATGGAG 58.815 47.826 0.00 0.00 33.48 3.86
4353 8936 3.581332 ACCTGAAAGTCCGAACTAATGGA 59.419 43.478 0.00 0.00 33.48 3.41
4354 8937 3.684788 CACCTGAAAGTCCGAACTAATGG 59.315 47.826 0.00 0.00 33.48 3.16
4355 8938 4.566004 TCACCTGAAAGTCCGAACTAATG 58.434 43.478 0.00 0.00 33.48 1.90
4356 8939 4.884668 TCACCTGAAAGTCCGAACTAAT 57.115 40.909 0.00 0.00 33.48 1.73
4357 8940 4.100498 AGTTCACCTGAAAGTCCGAACTAA 59.900 41.667 0.00 0.00 40.63 2.24
4358 8941 3.640029 AGTTCACCTGAAAGTCCGAACTA 59.360 43.478 0.00 0.00 40.63 2.24
4359 8942 2.434702 AGTTCACCTGAAAGTCCGAACT 59.565 45.455 0.00 0.00 38.88 3.01
4360 8943 2.544267 CAGTTCACCTGAAAGTCCGAAC 59.456 50.000 0.00 0.00 44.49 3.95
4371 8954 0.751277 TGCACCAACCAGTTCACCTG 60.751 55.000 0.00 0.00 41.15 4.00
4372 8955 0.185901 ATGCACCAACCAGTTCACCT 59.814 50.000 0.00 0.00 0.00 4.00
4374 8957 4.314740 TTTAATGCACCAACCAGTTCAC 57.685 40.909 0.00 0.00 0.00 3.18
4403 8986 5.335127 GCTGATTAGGCACAAACATGTAAG 58.665 41.667 0.00 0.00 0.00 2.34
4429 9012 2.026915 TGGTGATGTGAACCTCATCCTG 60.027 50.000 0.00 0.00 40.38 3.86
4436 9019 1.768275 TGTCAGTGGTGATGTGAACCT 59.232 47.619 0.00 0.00 38.60 3.50
4442 9025 8.862325 TCTAAATTTTATGTCAGTGGTGATGT 57.138 30.769 0.00 0.00 34.36 3.06
4470 9053 0.324943 ACTGCAAGCACTTCCGGTAT 59.675 50.000 0.00 0.00 37.60 2.73
4473 9056 1.197721 CTAAACTGCAAGCACTTCCGG 59.802 52.381 0.00 0.00 37.60 5.14
4513 9097 9.555727 AGCACAAAGTAGAATAACTCACTTTTA 57.444 29.630 0.00 0.00 38.75 1.52
4517 9101 5.409826 GCAGCACAAAGTAGAATAACTCACT 59.590 40.000 0.00 0.00 0.00 3.41
4518 9102 5.409826 AGCAGCACAAAGTAGAATAACTCAC 59.590 40.000 0.00 0.00 0.00 3.51
4519 9103 5.551233 AGCAGCACAAAGTAGAATAACTCA 58.449 37.500 0.00 0.00 0.00 3.41
4520 9104 5.639506 TGAGCAGCACAAAGTAGAATAACTC 59.360 40.000 0.00 0.00 0.00 3.01
4545 9129 4.566004 TGGTGGACTAAGATTCAACTTCG 58.434 43.478 0.00 0.00 0.00 3.79
4585 9169 3.716431 ACCTAATAGGAAACCGACCTCA 58.284 45.455 14.17 0.00 37.67 3.86
4589 9173 5.295152 CCATGTACCTAATAGGAAACCGAC 58.705 45.833 14.17 2.02 37.67 4.79
4592 9176 4.661709 TCCCCATGTACCTAATAGGAAACC 59.338 45.833 14.17 0.00 37.67 3.27
4605 9189 2.474410 GGATCGGAATCCCCATGTAC 57.526 55.000 0.00 0.00 45.11 2.90
4713 9297 5.304686 TGTTTTGTACTCCTTGAGGATGT 57.695 39.130 0.00 4.18 44.46 3.06
4833 9428 0.886563 GCTTCATTTGTCTGGCTGCT 59.113 50.000 0.00 0.00 0.00 4.24
5055 9650 0.536006 GCTGTGCTGGTCTCTTTGGT 60.536 55.000 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.