Multiple sequence alignment - TraesCS3B01G268600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G268600 chr3B 100.000 2627 0 0 1 2627 432335834 432333208 0.000000e+00 4852
1 TraesCS3B01G268600 chr3B 94.079 304 18 0 2128 2431 623667585 623667282 1.840000e-126 462
2 TraesCS3B01G268600 chr3B 94.613 297 16 0 2129 2425 32447518 32447814 6.620000e-126 460
3 TraesCS3B01G268600 chr3D 92.727 2145 92 28 5 2129 333285181 333283081 0.000000e+00 3038
4 TraesCS3B01G268600 chr3D 96.907 194 4 1 2434 2627 333283097 333282906 9.070000e-85 324
5 TraesCS3B01G268600 chr3A 88.454 2174 128 55 5 2129 450953393 450951294 0.000000e+00 2510
6 TraesCS3B01G268600 chr3A 94.406 143 8 0 2485 2627 450951289 450951147 1.220000e-53 220
7 TraesCS3B01G268600 chr5D 93.891 311 18 1 2121 2431 543670709 543671018 3.960000e-128 468
8 TraesCS3B01G268600 chr5B 94.118 306 17 1 2127 2431 580735848 580735543 5.120000e-127 464
9 TraesCS3B01G268600 chr1B 94.118 306 17 1 2127 2431 675768813 675769118 5.120000e-127 464
10 TraesCS3B01G268600 chr1B 92.722 316 23 0 2123 2438 12756840 12757155 8.570000e-125 457
11 TraesCS3B01G268600 chr6A 94.079 304 18 0 2128 2431 584038442 584038745 1.840000e-126 462
12 TraesCS3B01G268600 chr6A 93.791 306 19 0 2126 2431 181909845 181910150 6.620000e-126 460
13 TraesCS3B01G268600 chr5A 91.437 327 27 1 2114 2439 683947293 683946967 5.160000e-122 448


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G268600 chr3B 432333208 432335834 2626 True 4852 4852 100.000 1 2627 1 chr3B.!!$R1 2626
1 TraesCS3B01G268600 chr3D 333282906 333285181 2275 True 1681 3038 94.817 5 2627 2 chr3D.!!$R1 2622
2 TraesCS3B01G268600 chr3A 450951147 450953393 2246 True 1365 2510 91.430 5 2627 2 chr3A.!!$R1 2622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
484 504 0.179073 CAGTAGCCAGACCGGAATGG 60.179 60.0 20.96 20.96 46.41 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2217 2302 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.0 4.96 0.0 31.08 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 4.891566 CCACTCAGGCACGTACTC 57.108 61.111 0.00 0.00 0.00 2.59
61 62 1.154016 CCACTCAGGCACGTACTCG 60.154 63.158 0.00 0.00 43.34 4.18
112 114 5.626809 CGTCCAATAATGAAACAGAGGAGGA 60.627 44.000 0.00 0.00 33.04 3.71
182 191 3.515602 AGGCTAGGGCATTATTTGGAG 57.484 47.619 0.00 0.00 40.87 3.86
183 192 2.785857 AGGCTAGGGCATTATTTGGAGT 59.214 45.455 0.00 0.00 40.87 3.85
184 193 3.205282 AGGCTAGGGCATTATTTGGAGTT 59.795 43.478 0.00 0.00 40.87 3.01
185 194 3.319122 GGCTAGGGCATTATTTGGAGTTG 59.681 47.826 0.00 0.00 40.87 3.16
186 195 3.319122 GCTAGGGCATTATTTGGAGTTGG 59.681 47.826 0.00 0.00 38.54 3.77
187 196 3.756082 AGGGCATTATTTGGAGTTGGA 57.244 42.857 0.00 0.00 0.00 3.53
235 244 3.229276 TGTCACAAACAAAGCAACCTG 57.771 42.857 0.00 0.00 34.03 4.00
300 315 1.394917 CTCGTATCTGTGCCAAGCAAC 59.605 52.381 0.00 0.00 41.47 4.17
301 316 1.155889 CGTATCTGTGCCAAGCAACA 58.844 50.000 0.00 0.00 41.47 3.33
302 317 1.535028 CGTATCTGTGCCAAGCAACAA 59.465 47.619 0.00 0.00 41.47 2.83
481 501 1.972198 CACAGTAGCCAGACCGGAA 59.028 57.895 9.46 0.00 36.56 4.30
484 504 0.179073 CAGTAGCCAGACCGGAATGG 60.179 60.000 20.96 20.96 46.41 3.16
485 505 1.146263 GTAGCCAGACCGGAATGGG 59.854 63.158 24.62 14.55 44.64 4.00
509 529 2.203139 CACTCCACGCACCCAACA 60.203 61.111 0.00 0.00 0.00 3.33
515 535 2.901840 ACGCACCCAACACAGCTG 60.902 61.111 13.48 13.48 0.00 4.24
572 592 3.625897 CACGCCACCACAGGGAGA 61.626 66.667 0.00 0.00 38.05 3.71
573 593 2.847234 ACGCCACCACAGGGAGAA 60.847 61.111 0.00 0.00 38.05 2.87
596 624 3.499918 ACTCCTCATTTTGAAACTCAGCG 59.500 43.478 0.00 0.00 0.00 5.18
600 628 1.270550 CATTTTGAAACTCAGCGGGCT 59.729 47.619 0.00 0.00 0.00 5.19
633 665 4.529897 TGCTGCTTGATCATGGAGTTTAT 58.470 39.130 24.58 0.00 0.00 1.40
648 680 8.993121 CATGGAGTTTATGAGATTTATTAGCGT 58.007 33.333 0.00 0.00 0.00 5.07
651 697 9.042008 GGAGTTTATGAGATTTATTAGCGTCAA 57.958 33.333 0.00 0.00 0.00 3.18
669 715 5.915857 CGTCAAAGTATATGCACGCATATT 58.084 37.500 25.11 9.54 44.49 1.28
678 724 1.063321 TGCACGCATATTTTACCGCTG 59.937 47.619 0.00 0.00 0.00 5.18
689 735 2.472695 TTACCGCTGTGAGCATCTTT 57.527 45.000 0.00 0.00 42.58 2.52
694 741 1.532437 CGCTGTGAGCATCTTTGTGAA 59.468 47.619 0.00 0.00 42.58 3.18
702 749 2.225019 AGCATCTTTGTGAAACTGAGCG 59.775 45.455 0.00 0.00 38.04 5.03
706 753 0.749818 TTTGTGAAACTGAGCGGGCA 60.750 50.000 0.00 0.00 38.04 5.36
720 767 4.937620 TGAGCGGGCATATCATCTTAAATC 59.062 41.667 0.00 0.00 0.00 2.17
726 773 7.094805 GCGGGCATATCATCTTAAATCTTAACA 60.095 37.037 0.00 0.00 0.00 2.41
736 783 8.778358 CATCTTAAATCTTAACAGGTATGCCTC 58.222 37.037 0.00 0.00 44.97 4.70
739 786 2.108168 TCTTAACAGGTATGCCTCGCT 58.892 47.619 0.00 0.00 44.97 4.93
753 808 1.197721 CCTCGCTACTGCCAAACTTTG 59.802 52.381 0.00 0.00 35.36 2.77
794 849 1.818060 GCATTTACTGGCATGTGTCCA 59.182 47.619 0.00 0.00 0.00 4.02
819 874 4.095036 GTCCAGAGGCTTAATTTACAGCAC 59.905 45.833 0.00 1.41 37.81 4.40
846 901 2.553602 TGTCTACATTGCCAGTTTGCTG 59.446 45.455 0.00 0.00 42.22 4.41
1449 1525 2.668550 GAGGCCGCGTCAAAAGGT 60.669 61.111 4.92 0.00 0.00 3.50
1580 1656 4.367023 CGTGAACCCGCCTCCGAA 62.367 66.667 0.00 0.00 36.29 4.30
1640 1720 0.889186 GTGTGAGATGGCCAAACCGT 60.889 55.000 10.96 0.00 43.94 4.83
1728 1808 1.808411 GGCGACAAGTCAGAATTCCA 58.192 50.000 0.65 0.00 0.00 3.53
1741 1821 2.819984 AATTCCATCGTGCTGGCCGT 62.820 55.000 0.00 0.00 36.16 5.68
1841 1921 2.557924 AGCTGATGATCCAACGCAAAAA 59.442 40.909 0.00 0.00 0.00 1.94
1912 1992 0.977627 TGGGAGCCTCGTGATCATGT 60.978 55.000 14.52 0.00 0.00 3.21
1915 1995 0.179089 GAGCCTCGTGATCATGTGCT 60.179 55.000 24.75 24.75 32.34 4.40
1919 1999 0.463204 CTCGTGATCATGTGCTCCCT 59.537 55.000 14.52 0.00 0.00 4.20
1920 2000 0.176449 TCGTGATCATGTGCTCCCTG 59.824 55.000 14.52 0.00 0.00 4.45
2035 2120 4.202223 GGGGAGCTCGATTTGTACTTATGA 60.202 45.833 7.83 0.00 0.00 2.15
2036 2121 5.357257 GGGAGCTCGATTTGTACTTATGAA 58.643 41.667 7.83 0.00 0.00 2.57
2082 2167 4.647399 CGAGGTCTCTAGATTTCTCCCTTT 59.353 45.833 0.00 0.00 0.00 3.11
2116 2201 6.368779 TCCCTGTATATATTTCCGGGAAAG 57.631 41.667 25.00 10.45 36.36 2.62
2117 2202 6.086095 TCCCTGTATATATTTCCGGGAAAGA 58.914 40.000 25.00 21.76 36.36 2.52
2118 2203 6.733807 TCCCTGTATATATTTCCGGGAAAGAT 59.266 38.462 27.17 27.17 37.29 2.40
2119 2204 7.238933 TCCCTGTATATATTTCCGGGAAAGATT 59.761 37.037 28.65 19.70 35.51 2.40
2120 2205 8.545472 CCCTGTATATATTTCCGGGAAAGATTA 58.455 37.037 28.65 18.91 35.51 1.75
2121 2206 9.953565 CCTGTATATATTTCCGGGAAAGATTAA 57.046 33.333 28.65 16.04 35.51 1.40
2127 2212 8.678593 ATATTTCCGGGAAAGATTAAGAGTTC 57.321 34.615 25.00 0.00 34.92 3.01
2128 2213 5.757099 TTCCGGGAAAGATTAAGAGTTCT 57.243 39.130 7.09 0.00 0.00 3.01
2129 2214 5.757099 TCCGGGAAAGATTAAGAGTTCTT 57.243 39.130 0.00 0.00 39.85 2.52
2130 2215 6.123045 TCCGGGAAAGATTAAGAGTTCTTT 57.877 37.500 0.00 2.20 43.12 2.52
2131 2216 6.540083 TCCGGGAAAGATTAAGAGTTCTTTT 58.460 36.000 0.00 0.00 41.12 2.27
2132 2217 7.002276 TCCGGGAAAGATTAAGAGTTCTTTTT 58.998 34.615 0.00 0.00 41.12 1.94
2156 2241 6.785488 TTTTAGCATCAGTACAGACACAAG 57.215 37.500 0.00 0.00 0.00 3.16
2157 2242 2.693069 AGCATCAGTACAGACACAAGC 58.307 47.619 0.00 0.00 0.00 4.01
2158 2243 1.391485 GCATCAGTACAGACACAAGCG 59.609 52.381 0.00 0.00 0.00 4.68
2159 2244 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
2160 2245 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
2161 2246 1.883926 TCAGTACAGACACAAGCGCTA 59.116 47.619 12.05 0.00 0.00 4.26
2162 2247 2.295070 TCAGTACAGACACAAGCGCTAA 59.705 45.455 12.05 0.00 0.00 3.09
2163 2248 3.056821 TCAGTACAGACACAAGCGCTAAT 60.057 43.478 12.05 0.00 0.00 1.73
2164 2249 4.157105 TCAGTACAGACACAAGCGCTAATA 59.843 41.667 12.05 0.00 0.00 0.98
2165 2250 5.043903 CAGTACAGACACAAGCGCTAATAT 58.956 41.667 12.05 0.00 0.00 1.28
2166 2251 6.038936 TCAGTACAGACACAAGCGCTAATATA 59.961 38.462 12.05 0.00 0.00 0.86
2167 2252 6.142480 CAGTACAGACACAAGCGCTAATATAC 59.858 42.308 12.05 5.95 0.00 1.47
2168 2253 5.006153 ACAGACACAAGCGCTAATATACA 57.994 39.130 12.05 0.00 0.00 2.29
2169 2254 5.601662 ACAGACACAAGCGCTAATATACAT 58.398 37.500 12.05 0.00 0.00 2.29
2170 2255 5.463392 ACAGACACAAGCGCTAATATACATG 59.537 40.000 12.05 4.89 0.00 3.21
2171 2256 4.449068 AGACACAAGCGCTAATATACATGC 59.551 41.667 12.05 0.00 0.00 4.06
2179 2264 4.811208 CGCTAATATACATGCGCATACAC 58.189 43.478 24.84 4.36 41.85 2.90
2180 2265 4.562789 CGCTAATATACATGCGCATACACT 59.437 41.667 24.84 10.63 41.85 3.55
2181 2266 5.275927 CGCTAATATACATGCGCATACACTC 60.276 44.000 24.84 5.43 41.85 3.51
2182 2267 5.576774 GCTAATATACATGCGCATACACTCA 59.423 40.000 24.84 6.80 0.00 3.41
2183 2268 6.256539 GCTAATATACATGCGCATACACTCAT 59.743 38.462 24.84 11.84 0.00 2.90
2184 2269 6.653273 AATATACATGCGCATACACTCATC 57.347 37.500 24.84 0.00 0.00 2.92
2185 2270 1.586422 ACATGCGCATACACTCATCC 58.414 50.000 24.84 0.00 0.00 3.51
2186 2271 1.139654 ACATGCGCATACACTCATCCT 59.860 47.619 24.84 0.00 0.00 3.24
2187 2272 2.216046 CATGCGCATACACTCATCCTT 58.784 47.619 24.84 0.00 0.00 3.36
2188 2273 3.181466 ACATGCGCATACACTCATCCTTA 60.181 43.478 24.84 0.00 0.00 2.69
2189 2274 3.751479 TGCGCATACACTCATCCTTAT 57.249 42.857 5.66 0.00 0.00 1.73
2190 2275 3.392882 TGCGCATACACTCATCCTTATG 58.607 45.455 5.66 0.00 0.00 1.90
2191 2276 3.069443 TGCGCATACACTCATCCTTATGA 59.931 43.478 5.66 0.00 39.87 2.15
2192 2277 4.058124 GCGCATACACTCATCCTTATGAA 58.942 43.478 0.30 0.00 41.57 2.57
2193 2278 4.151335 GCGCATACACTCATCCTTATGAAG 59.849 45.833 0.30 0.00 41.57 3.02
2203 2288 0.447801 CCTTATGAAGGCACACACGC 59.552 55.000 0.00 0.00 42.78 5.34
2204 2289 1.155889 CTTATGAAGGCACACACGCA 58.844 50.000 0.00 0.00 0.00 5.24
2205 2290 0.871722 TTATGAAGGCACACACGCAC 59.128 50.000 0.00 0.00 0.00 5.34
2206 2291 0.250081 TATGAAGGCACACACGCACA 60.250 50.000 0.00 0.00 0.00 4.57
2207 2292 1.785041 ATGAAGGCACACACGCACAC 61.785 55.000 0.00 0.00 0.00 3.82
2208 2293 3.181169 GAAGGCACACACGCACACC 62.181 63.158 0.00 0.00 0.00 4.16
2211 2296 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
2212 2297 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
2213 2298 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
2214 2299 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
2215 2300 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
2216 2301 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
2217 2302 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
2218 2303 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
2219 2304 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
2220 2305 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
2221 2306 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
2222 2307 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
2223 2308 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
2224 2309 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
2225 2310 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
2226 2311 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
2227 2312 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
2228 2313 1.343069 CTACCCCTATGAGCACCTCC 58.657 60.000 0.00 0.00 0.00 4.30
2229 2314 0.469331 TACCCCTATGAGCACCTCCG 60.469 60.000 0.00 0.00 0.00 4.63
2230 2315 1.457643 CCCCTATGAGCACCTCCGA 60.458 63.158 0.00 0.00 0.00 4.55
2231 2316 1.467678 CCCCTATGAGCACCTCCGAG 61.468 65.000 0.00 0.00 0.00 4.63
2232 2317 0.468214 CCCTATGAGCACCTCCGAGA 60.468 60.000 0.00 0.00 0.00 4.04
2233 2318 0.958091 CCTATGAGCACCTCCGAGAG 59.042 60.000 0.00 0.00 0.00 3.20
2234 2319 1.477740 CCTATGAGCACCTCCGAGAGA 60.478 57.143 0.00 0.00 0.00 3.10
2235 2320 1.606668 CTATGAGCACCTCCGAGAGAC 59.393 57.143 0.00 0.00 0.00 3.36
2236 2321 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.000 0.00 0.00 0.00 3.24
2237 2322 0.962855 TGAGCACCTCCGAGAGACTG 60.963 60.000 0.00 0.22 0.00 3.51
2238 2323 0.678366 GAGCACCTCCGAGAGACTGA 60.678 60.000 0.00 0.00 0.00 3.41
2239 2324 0.679640 AGCACCTCCGAGAGACTGAG 60.680 60.000 0.00 0.00 0.00 3.35
2240 2325 1.806568 CACCTCCGAGAGACTGAGC 59.193 63.158 0.00 0.00 0.00 4.26
2241 2326 1.379309 ACCTCCGAGAGACTGAGCC 60.379 63.158 0.00 0.00 0.00 4.70
2242 2327 1.379176 CCTCCGAGAGACTGAGCCA 60.379 63.158 0.00 0.00 0.00 4.75
2243 2328 1.383456 CCTCCGAGAGACTGAGCCAG 61.383 65.000 0.00 1.16 37.52 4.85
2244 2329 2.003658 CTCCGAGAGACTGAGCCAGC 62.004 65.000 2.50 0.00 34.37 4.85
2245 2330 2.346541 CCGAGAGACTGAGCCAGCA 61.347 63.158 2.50 0.00 34.37 4.41
2246 2331 1.674764 CCGAGAGACTGAGCCAGCAT 61.675 60.000 2.50 0.00 34.37 3.79
2247 2332 1.028130 CGAGAGACTGAGCCAGCATA 58.972 55.000 2.50 0.00 34.37 3.14
2248 2333 1.612950 CGAGAGACTGAGCCAGCATAT 59.387 52.381 2.50 0.00 34.37 1.78
2249 2334 2.351641 CGAGAGACTGAGCCAGCATATC 60.352 54.545 2.50 0.00 34.37 1.63
2250 2335 2.627221 GAGAGACTGAGCCAGCATATCA 59.373 50.000 2.50 0.00 34.37 2.15
2251 2336 3.241156 AGAGACTGAGCCAGCATATCAT 58.759 45.455 2.50 0.00 34.37 2.45
2252 2337 3.647113 AGAGACTGAGCCAGCATATCATT 59.353 43.478 2.50 0.00 34.37 2.57
2253 2338 4.102838 AGAGACTGAGCCAGCATATCATTT 59.897 41.667 2.50 0.00 34.37 2.32
2254 2339 4.789807 AGACTGAGCCAGCATATCATTTT 58.210 39.130 2.50 0.00 34.37 1.82
2255 2340 4.579340 AGACTGAGCCAGCATATCATTTTG 59.421 41.667 2.50 0.00 34.37 2.44
2256 2341 4.529897 ACTGAGCCAGCATATCATTTTGA 58.470 39.130 2.50 0.00 34.37 2.69
2257 2342 4.579340 ACTGAGCCAGCATATCATTTTGAG 59.421 41.667 2.50 0.00 34.37 3.02
2258 2343 4.784177 TGAGCCAGCATATCATTTTGAGA 58.216 39.130 0.00 0.00 0.00 3.27
2259 2344 5.382616 TGAGCCAGCATATCATTTTGAGAT 58.617 37.500 0.00 0.00 0.00 2.75
2260 2345 5.831525 TGAGCCAGCATATCATTTTGAGATT 59.168 36.000 0.00 0.00 0.00 2.40
2261 2346 6.322969 TGAGCCAGCATATCATTTTGAGATTT 59.677 34.615 0.00 0.00 0.00 2.17
2262 2347 7.503230 TGAGCCAGCATATCATTTTGAGATTTA 59.497 33.333 0.00 0.00 0.00 1.40
2263 2348 7.655490 AGCCAGCATATCATTTTGAGATTTAC 58.345 34.615 0.00 0.00 0.00 2.01
2264 2349 6.580041 GCCAGCATATCATTTTGAGATTTACG 59.420 38.462 0.00 0.00 0.00 3.18
2265 2350 7.520453 GCCAGCATATCATTTTGAGATTTACGA 60.520 37.037 0.00 0.00 0.00 3.43
2266 2351 8.344831 CCAGCATATCATTTTGAGATTTACGAA 58.655 33.333 0.00 0.00 0.00 3.85
2267 2352 9.378597 CAGCATATCATTTTGAGATTTACGAAG 57.621 33.333 0.00 0.00 0.00 3.79
2269 2354 9.374960 GCATATCATTTTGAGATTTACGAAGTC 57.625 33.333 0.00 0.00 43.93 3.01
2272 2357 7.129109 TCATTTTGAGATTTACGAAGTCACC 57.871 36.000 0.00 0.00 43.93 4.02
2273 2358 6.708502 TCATTTTGAGATTTACGAAGTCACCA 59.291 34.615 0.00 0.00 43.93 4.17
2274 2359 7.390440 TCATTTTGAGATTTACGAAGTCACCAT 59.610 33.333 0.00 0.00 43.93 3.55
2275 2360 8.664798 CATTTTGAGATTTACGAAGTCACCATA 58.335 33.333 0.00 0.00 43.93 2.74
2276 2361 7.827819 TTTGAGATTTACGAAGTCACCATAG 57.172 36.000 0.00 0.00 43.93 2.23
2277 2362 5.902681 TGAGATTTACGAAGTCACCATAGG 58.097 41.667 0.00 0.00 43.93 2.57
2278 2363 4.694339 AGATTTACGAAGTCACCATAGGC 58.306 43.478 0.00 0.00 43.93 3.93
2279 2364 2.572191 TTACGAAGTCACCATAGGCG 57.428 50.000 0.00 0.00 43.93 5.52
2280 2365 0.101759 TACGAAGTCACCATAGGCGC 59.898 55.000 0.00 0.00 43.93 6.53
2281 2366 1.883084 CGAAGTCACCATAGGCGCC 60.883 63.158 21.89 21.89 0.00 6.53
2282 2367 1.522569 GAAGTCACCATAGGCGCCT 59.477 57.895 34.85 34.85 0.00 5.52
2283 2368 0.530870 GAAGTCACCATAGGCGCCTC 60.531 60.000 36.73 17.40 0.00 4.70
2284 2369 2.279517 GTCACCATAGGCGCCTCG 60.280 66.667 36.73 25.26 0.00 4.63
2285 2370 2.758327 TCACCATAGGCGCCTCGT 60.758 61.111 36.73 24.45 0.00 4.18
2286 2371 2.279517 CACCATAGGCGCCTCGTC 60.280 66.667 36.73 1.08 0.00 4.20
2287 2372 3.900892 ACCATAGGCGCCTCGTCG 61.901 66.667 36.73 21.01 36.23 5.12
2288 2373 3.900892 CCATAGGCGCCTCGTCGT 61.901 66.667 36.73 11.27 36.23 4.34
2289 2374 2.353607 CATAGGCGCCTCGTCGTC 60.354 66.667 36.73 0.00 36.23 4.20
2290 2375 3.950254 ATAGGCGCCTCGTCGTCG 61.950 66.667 36.73 0.00 39.34 5.12
2295 2380 4.907034 CGCCTCGTCGTCGATGGG 62.907 72.222 14.28 11.00 45.21 4.00
2296 2381 3.515286 GCCTCGTCGTCGATGGGA 61.515 66.667 16.08 4.83 45.21 4.37
2297 2382 3.060020 GCCTCGTCGTCGATGGGAA 62.060 63.158 16.08 0.00 45.21 3.97
2298 2383 1.226603 CCTCGTCGTCGATGGGAAC 60.227 63.158 16.08 0.00 45.21 3.62
2299 2384 1.582937 CTCGTCGTCGATGGGAACG 60.583 63.158 8.75 10.22 45.21 3.95
2300 2385 2.177531 CGTCGTCGATGGGAACGT 59.822 61.111 6.56 0.00 39.71 3.99
2301 2386 1.866496 CGTCGTCGATGGGAACGTC 60.866 63.158 6.56 0.00 43.20 4.34
2302 2387 1.505353 GTCGTCGATGGGAACGTCT 59.495 57.895 4.48 0.00 44.51 4.18
2303 2388 0.109412 GTCGTCGATGGGAACGTCTT 60.109 55.000 4.48 0.00 44.51 3.01
2304 2389 0.169672 TCGTCGATGGGAACGTCTTC 59.830 55.000 4.48 0.00 44.51 2.87
2305 2390 0.170561 CGTCGATGGGAACGTCTTCT 59.829 55.000 0.00 0.00 44.51 2.85
2306 2391 1.794437 CGTCGATGGGAACGTCTTCTC 60.794 57.143 0.00 0.00 44.51 2.87
2307 2392 0.815734 TCGATGGGAACGTCTTCTCC 59.184 55.000 0.00 0.00 44.51 3.71
2312 2397 3.516578 GGAACGTCTTCTCCCACTG 57.483 57.895 0.00 0.00 0.00 3.66
2313 2398 0.966920 GGAACGTCTTCTCCCACTGA 59.033 55.000 0.00 0.00 0.00 3.41
2314 2399 1.343465 GGAACGTCTTCTCCCACTGAA 59.657 52.381 0.00 0.00 0.00 3.02
2315 2400 2.224209 GGAACGTCTTCTCCCACTGAAA 60.224 50.000 0.00 0.00 0.00 2.69
2316 2401 3.463944 GAACGTCTTCTCCCACTGAAAA 58.536 45.455 0.00 0.00 0.00 2.29
2317 2402 2.835027 ACGTCTTCTCCCACTGAAAAC 58.165 47.619 0.00 0.00 0.00 2.43
2318 2403 1.792949 CGTCTTCTCCCACTGAAAACG 59.207 52.381 0.00 0.00 32.80 3.60
2319 2404 1.531578 GTCTTCTCCCACTGAAAACGC 59.468 52.381 0.00 0.00 0.00 4.84
2320 2405 1.140052 TCTTCTCCCACTGAAAACGCA 59.860 47.619 0.00 0.00 0.00 5.24
2321 2406 2.154462 CTTCTCCCACTGAAAACGCAT 58.846 47.619 0.00 0.00 0.00 4.73
2322 2407 2.270352 TCTCCCACTGAAAACGCATT 57.730 45.000 0.00 0.00 0.00 3.56
2323 2408 1.879380 TCTCCCACTGAAAACGCATTG 59.121 47.619 0.00 0.00 0.00 2.82
2324 2409 0.313672 TCCCACTGAAAACGCATTGC 59.686 50.000 0.00 0.00 0.00 3.56
2325 2410 0.667184 CCCACTGAAAACGCATTGCC 60.667 55.000 2.41 0.00 0.00 4.52
2326 2411 1.003262 CCACTGAAAACGCATTGCCG 61.003 55.000 2.41 1.05 0.00 5.69
2327 2412 0.040514 CACTGAAAACGCATTGCCGA 60.041 50.000 2.41 0.00 0.00 5.54
2328 2413 0.665835 ACTGAAAACGCATTGCCGAA 59.334 45.000 2.41 0.00 0.00 4.30
2329 2414 1.066303 ACTGAAAACGCATTGCCGAAA 59.934 42.857 2.41 0.00 0.00 3.46
2330 2415 2.123342 CTGAAAACGCATTGCCGAAAA 58.877 42.857 2.41 0.00 0.00 2.29
2331 2416 2.730928 CTGAAAACGCATTGCCGAAAAT 59.269 40.909 2.41 0.00 0.00 1.82
2332 2417 2.728839 TGAAAACGCATTGCCGAAAATC 59.271 40.909 2.41 0.00 0.00 2.17
2333 2418 1.708822 AAACGCATTGCCGAAAATCC 58.291 45.000 2.41 0.00 0.00 3.01
2334 2419 0.887933 AACGCATTGCCGAAAATCCT 59.112 45.000 2.41 0.00 0.00 3.24
2335 2420 0.171007 ACGCATTGCCGAAAATCCTG 59.829 50.000 2.41 0.00 0.00 3.86
2336 2421 0.451383 CGCATTGCCGAAAATCCTGA 59.549 50.000 2.41 0.00 0.00 3.86
2337 2422 1.135431 CGCATTGCCGAAAATCCTGAA 60.135 47.619 2.41 0.00 0.00 3.02
2338 2423 2.670789 CGCATTGCCGAAAATCCTGAAA 60.671 45.455 2.41 0.00 0.00 2.69
2339 2424 3.524541 GCATTGCCGAAAATCCTGAAAT 58.475 40.909 0.00 0.00 0.00 2.17
2340 2425 4.681744 GCATTGCCGAAAATCCTGAAATA 58.318 39.130 0.00 0.00 0.00 1.40
2341 2426 5.108517 GCATTGCCGAAAATCCTGAAATAA 58.891 37.500 0.00 0.00 0.00 1.40
2342 2427 5.580297 GCATTGCCGAAAATCCTGAAATAAA 59.420 36.000 0.00 0.00 0.00 1.40
2343 2428 6.258507 GCATTGCCGAAAATCCTGAAATAAAT 59.741 34.615 0.00 0.00 0.00 1.40
2344 2429 7.517259 GCATTGCCGAAAATCCTGAAATAAATC 60.517 37.037 0.00 0.00 0.00 2.17
2345 2430 5.901552 TGCCGAAAATCCTGAAATAAATCC 58.098 37.500 0.00 0.00 0.00 3.01
2346 2431 5.420421 TGCCGAAAATCCTGAAATAAATCCA 59.580 36.000 0.00 0.00 0.00 3.41
2347 2432 5.979517 GCCGAAAATCCTGAAATAAATCCAG 59.020 40.000 0.00 0.00 0.00 3.86
2348 2433 6.183360 GCCGAAAATCCTGAAATAAATCCAGA 60.183 38.462 0.00 0.00 0.00 3.86
2349 2434 7.630513 GCCGAAAATCCTGAAATAAATCCAGAA 60.631 37.037 0.00 0.00 0.00 3.02
2350 2435 8.250332 CCGAAAATCCTGAAATAAATCCAGAAA 58.750 33.333 0.00 0.00 0.00 2.52
2351 2436 9.807649 CGAAAATCCTGAAATAAATCCAGAAAT 57.192 29.630 0.00 0.00 0.00 2.17
2357 2442 9.146586 TCCTGAAATAAATCCAGAAATAATGGG 57.853 33.333 0.00 0.00 38.44 4.00
2358 2443 9.146586 CCTGAAATAAATCCAGAAATAATGGGA 57.853 33.333 0.00 0.00 38.44 4.37
2360 2445 8.641541 TGAAATAAATCCAGAAATAATGGGAGC 58.358 33.333 0.00 0.00 38.44 4.70
2361 2446 8.551682 AAATAAATCCAGAAATAATGGGAGCA 57.448 30.769 0.00 0.00 38.44 4.26
2362 2447 5.859205 AAATCCAGAAATAATGGGAGCAC 57.141 39.130 0.00 0.00 38.44 4.40
2363 2448 3.297134 TCCAGAAATAATGGGAGCACC 57.703 47.619 0.00 0.00 38.44 5.01
2372 2457 2.473768 TGGGAGCACCAGGATTTGA 58.526 52.632 1.58 0.00 46.80 2.69
2373 2458 0.776810 TGGGAGCACCAGGATTTGAA 59.223 50.000 1.58 0.00 46.80 2.69
2374 2459 1.177401 GGGAGCACCAGGATTTGAAC 58.823 55.000 1.58 0.00 39.85 3.18
2375 2460 1.177401 GGAGCACCAGGATTTGAACC 58.823 55.000 0.00 0.00 35.97 3.62
2376 2461 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
2377 2462 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
2408 2493 3.538634 GGATACCACTGTCCACCTAAC 57.461 52.381 0.00 0.00 34.57 2.34
2409 2494 2.169978 GGATACCACTGTCCACCTAACC 59.830 54.545 0.00 0.00 34.57 2.85
2410 2495 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
2411 2496 1.742308 ACCACTGTCCACCTAACCAT 58.258 50.000 0.00 0.00 0.00 3.55
2412 2497 1.628846 ACCACTGTCCACCTAACCATC 59.371 52.381 0.00 0.00 0.00 3.51
2413 2498 1.909302 CCACTGTCCACCTAACCATCT 59.091 52.381 0.00 0.00 0.00 2.90
2414 2499 2.305927 CCACTGTCCACCTAACCATCTT 59.694 50.000 0.00 0.00 0.00 2.40
2415 2500 3.517901 CCACTGTCCACCTAACCATCTTA 59.482 47.826 0.00 0.00 0.00 2.10
2416 2501 4.019681 CCACTGTCCACCTAACCATCTTAA 60.020 45.833 0.00 0.00 0.00 1.85
2417 2502 4.935808 CACTGTCCACCTAACCATCTTAAC 59.064 45.833 0.00 0.00 0.00 2.01
2418 2503 4.019591 ACTGTCCACCTAACCATCTTAACC 60.020 45.833 0.00 0.00 0.00 2.85
2419 2504 3.911260 TGTCCACCTAACCATCTTAACCA 59.089 43.478 0.00 0.00 0.00 3.67
2420 2505 4.259356 GTCCACCTAACCATCTTAACCAC 58.741 47.826 0.00 0.00 0.00 4.16
2421 2506 3.911260 TCCACCTAACCATCTTAACCACA 59.089 43.478 0.00 0.00 0.00 4.17
2422 2507 4.019681 TCCACCTAACCATCTTAACCACAG 60.020 45.833 0.00 0.00 0.00 3.66
2423 2508 4.261801 CACCTAACCATCTTAACCACAGG 58.738 47.826 0.00 0.00 0.00 4.00
2424 2509 3.914435 ACCTAACCATCTTAACCACAGGT 59.086 43.478 0.00 0.00 37.65 4.00
2426 2511 4.700213 CCTAACCATCTTAACCACAGGTTG 59.300 45.833 11.51 0.00 46.35 3.77
2427 2512 4.447138 AACCATCTTAACCACAGGTTGA 57.553 40.909 11.51 2.55 46.35 3.18
2428 2513 4.657814 ACCATCTTAACCACAGGTTGAT 57.342 40.909 11.51 4.14 46.35 2.57
2429 2514 4.998051 ACCATCTTAACCACAGGTTGATT 58.002 39.130 11.51 0.00 46.35 2.57
2430 2515 5.010282 ACCATCTTAACCACAGGTTGATTC 58.990 41.667 11.51 0.00 46.35 2.52
2431 2516 5.009631 CCATCTTAACCACAGGTTGATTCA 58.990 41.667 11.51 0.00 46.35 2.57
2432 2517 5.106157 CCATCTTAACCACAGGTTGATTCAC 60.106 44.000 11.51 0.00 46.35 3.18
2433 2518 4.062293 TCTTAACCACAGGTTGATTCACG 58.938 43.478 11.51 0.00 46.35 4.35
2434 2519 2.631160 AACCACAGGTTGATTCACGA 57.369 45.000 0.00 0.00 45.07 4.35
2435 2520 2.631160 ACCACAGGTTGATTCACGAA 57.369 45.000 0.00 0.00 27.29 3.85
2436 2521 2.925724 ACCACAGGTTGATTCACGAAA 58.074 42.857 0.00 0.00 27.29 3.46
2437 2522 2.878406 ACCACAGGTTGATTCACGAAAG 59.122 45.455 0.00 0.00 27.29 2.62
2471 2556 4.343231 TGGTTCGTACTACTATGTGGGAA 58.657 43.478 0.00 0.00 0.00 3.97
2472 2557 4.957954 TGGTTCGTACTACTATGTGGGAAT 59.042 41.667 0.00 0.00 0.00 3.01
2499 2584 1.258458 CTACGCGTTTCACCGTGAAAA 59.742 47.619 24.74 10.79 46.53 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.836007 GGACCAGGAGGAATCTGAATATTTTT 59.164 38.462 0.00 0.00 38.69 1.94
1 2 6.368805 GGACCAGGAGGAATCTGAATATTTT 58.631 40.000 0.00 0.00 38.69 1.82
2 3 5.455326 CGGACCAGGAGGAATCTGAATATTT 60.455 44.000 0.00 0.00 38.69 1.40
3 4 4.040952 CGGACCAGGAGGAATCTGAATATT 59.959 45.833 0.00 0.00 38.69 1.28
58 59 0.739561 GCTGGAGGTGGTACTACGAG 59.260 60.000 3.03 0.00 0.00 4.18
60 61 0.739561 GAGCTGGAGGTGGTACTACG 59.260 60.000 3.03 0.00 0.00 3.51
61 62 1.751924 CTGAGCTGGAGGTGGTACTAC 59.248 57.143 0.00 0.00 0.00 2.73
62 63 1.960471 GCTGAGCTGGAGGTGGTACTA 60.960 57.143 0.00 0.00 0.00 1.82
63 64 1.261238 GCTGAGCTGGAGGTGGTACT 61.261 60.000 0.00 0.00 0.00 2.73
128 131 2.557056 TGTTTCCTCTAGACCACGACTG 59.443 50.000 0.00 0.00 0.00 3.51
130 133 3.655276 TTGTTTCCTCTAGACCACGAC 57.345 47.619 0.00 0.00 0.00 4.34
182 191 3.869065 TGATGATAAAGACGGGTCCAAC 58.131 45.455 0.00 0.00 0.00 3.77
183 192 4.408921 AGATGATGATAAAGACGGGTCCAA 59.591 41.667 0.00 0.00 0.00 3.53
184 193 3.967326 AGATGATGATAAAGACGGGTCCA 59.033 43.478 0.00 0.00 0.00 4.02
185 194 4.310769 CAGATGATGATAAAGACGGGTCC 58.689 47.826 0.00 0.00 0.00 4.46
186 195 4.202264 ACCAGATGATGATAAAGACGGGTC 60.202 45.833 0.00 0.00 0.00 4.46
187 196 3.711704 ACCAGATGATGATAAAGACGGGT 59.288 43.478 0.00 0.00 0.00 5.28
235 244 1.256812 CTTTGGGTGGTGGATTGGAC 58.743 55.000 0.00 0.00 0.00 4.02
258 267 2.168272 ATTCAAAGGCCTGGGGTCCC 62.168 60.000 5.69 0.00 0.00 4.46
300 315 3.368843 CGGCCTTTAGGTACGTTTACTTG 59.631 47.826 0.00 0.00 37.57 3.16
301 316 3.588955 CGGCCTTTAGGTACGTTTACTT 58.411 45.455 0.00 0.00 37.57 2.24
302 317 2.094026 CCGGCCTTTAGGTACGTTTACT 60.094 50.000 0.00 0.00 36.47 2.24
375 395 3.801997 CCCGATTCCTGCCTGCCT 61.802 66.667 0.00 0.00 0.00 4.75
485 505 4.329545 TGCGTGGAGTGGGGCTTC 62.330 66.667 0.00 0.00 0.00 3.86
509 529 2.352032 GGGACGTAGGAGCAGCTGT 61.352 63.158 16.64 1.59 0.00 4.40
572 592 5.506317 CGCTGAGTTTCAAAATGAGGAGTTT 60.506 40.000 0.00 0.00 0.00 2.66
573 593 4.023707 CGCTGAGTTTCAAAATGAGGAGTT 60.024 41.667 0.00 0.00 0.00 3.01
611 639 2.502142 AACTCCATGATCAAGCAGCA 57.498 45.000 0.00 0.00 0.00 4.41
648 680 8.286800 GGTAAAATATGCGTGCATATACTTTGA 58.713 33.333 23.49 9.30 45.66 2.69
651 697 6.619874 GCGGTAAAATATGCGTGCATATACTT 60.620 38.462 23.49 20.54 45.66 2.24
658 704 1.063321 CAGCGGTAAAATATGCGTGCA 59.937 47.619 0.00 0.00 0.00 4.57
669 715 2.472695 AAGATGCTCACAGCGGTAAA 57.527 45.000 0.00 0.00 46.26 2.01
678 724 4.781071 CTCAGTTTCACAAAGATGCTCAC 58.219 43.478 0.00 0.00 0.00 3.51
689 735 0.323302 TATGCCCGCTCAGTTTCACA 59.677 50.000 0.00 0.00 0.00 3.58
694 741 1.696336 AGATGATATGCCCGCTCAGTT 59.304 47.619 0.00 0.00 0.00 3.16
702 749 8.734386 CCTGTTAAGATTTAAGATGATATGCCC 58.266 37.037 0.00 0.00 0.00 5.36
726 773 1.749334 GGCAGTAGCGAGGCATACCT 61.749 60.000 0.00 0.00 43.83 3.08
736 783 3.773117 CCAAAGTTTGGCAGTAGCG 57.227 52.632 21.39 0.00 45.17 4.26
753 808 2.095372 CGTCCGCCTGAAATAGAAAACC 59.905 50.000 0.00 0.00 0.00 3.27
755 810 1.735571 GCGTCCGCCTGAAATAGAAAA 59.264 47.619 0.00 0.00 34.56 2.29
794 849 4.884164 GCTGTAAATTAAGCCTCTGGACAT 59.116 41.667 0.00 0.00 33.12 3.06
819 874 0.673333 TGGCAATGTAGACAGGCACG 60.673 55.000 10.21 0.00 33.44 5.34
846 901 3.044059 GCGATTGAGCACAGTGGCC 62.044 63.158 1.84 0.00 33.09 5.36
904 962 0.757188 TGTGGCAATTGAAACGGGGT 60.757 50.000 10.34 0.00 0.00 4.95
953 1013 1.439353 CCGAGGAAATGGCCGACATG 61.439 60.000 0.00 0.00 40.44 3.21
1100 1164 4.452733 CTTGGTCCCCGTCTCCGC 62.453 72.222 0.00 0.00 0.00 5.54
1101 1165 3.771160 CCTTGGTCCCCGTCTCCG 61.771 72.222 0.00 0.00 0.00 4.63
1102 1166 4.097361 GCCTTGGTCCCCGTCTCC 62.097 72.222 0.00 0.00 0.00 3.71
1103 1167 4.452733 CGCCTTGGTCCCCGTCTC 62.453 72.222 0.00 0.00 0.00 3.36
1449 1525 4.034258 GTCGCCACGTCGTCCTCA 62.034 66.667 0.00 0.00 0.00 3.86
1488 1564 2.580867 CTTTCCTCCTCGCTCGCG 60.581 66.667 0.00 0.00 41.35 5.87
1542 1618 2.358737 AAGGACAAGCGGCCGAAG 60.359 61.111 33.48 19.90 0.00 3.79
1741 1821 0.107703 AGAGAAATGCGAATGCCGGA 60.108 50.000 5.05 0.00 44.31 5.14
1823 1903 3.190327 ACGATTTTTGCGTTGGATCATCA 59.810 39.130 0.00 0.00 39.18 3.07
1841 1921 3.587498 TCTCCTAATCATCCCCAACGAT 58.413 45.455 0.00 0.00 0.00 3.73
1903 1983 2.401967 GCAGGGAGCACATGATCAC 58.598 57.895 0.00 0.00 44.79 3.06
1970 2051 2.417719 AGAATGAACACTCGACAAGGC 58.582 47.619 0.00 0.00 0.00 4.35
2035 2120 8.085296 TCGAAGGCACAAATTATGTACAATTTT 58.915 29.630 0.00 0.00 41.46 1.82
2036 2121 7.598278 TCGAAGGCACAAATTATGTACAATTT 58.402 30.769 0.00 0.00 41.46 1.82
2132 2217 6.293407 GCTTGTGTCTGTACTGATGCTAAAAA 60.293 38.462 5.69 0.00 0.00 1.94
2133 2218 5.179368 GCTTGTGTCTGTACTGATGCTAAAA 59.821 40.000 5.69 0.00 0.00 1.52
2134 2219 4.690748 GCTTGTGTCTGTACTGATGCTAAA 59.309 41.667 5.69 0.00 0.00 1.85
2135 2220 4.245660 GCTTGTGTCTGTACTGATGCTAA 58.754 43.478 5.69 0.07 0.00 3.09
2136 2221 3.673323 CGCTTGTGTCTGTACTGATGCTA 60.673 47.826 5.69 0.00 0.00 3.49
2137 2222 2.693069 GCTTGTGTCTGTACTGATGCT 58.307 47.619 5.69 0.00 0.00 3.79
2138 2223 1.391485 CGCTTGTGTCTGTACTGATGC 59.609 52.381 5.69 3.20 0.00 3.91
2139 2224 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
2140 2225 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
2141 2226 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
2142 2227 2.347697 TAGCGCTTGTGTCTGTACTG 57.652 50.000 18.68 0.00 0.00 2.74
2143 2228 3.594603 ATTAGCGCTTGTGTCTGTACT 57.405 42.857 18.68 0.00 0.00 2.73
2144 2229 5.975344 TGTATATTAGCGCTTGTGTCTGTAC 59.025 40.000 18.68 9.09 0.00 2.90
2145 2230 6.139048 TGTATATTAGCGCTTGTGTCTGTA 57.861 37.500 18.68 0.00 0.00 2.74
2146 2231 5.006153 TGTATATTAGCGCTTGTGTCTGT 57.994 39.130 18.68 0.00 0.00 3.41
2147 2232 5.613360 GCATGTATATTAGCGCTTGTGTCTG 60.613 44.000 18.68 5.72 0.00 3.51
2148 2233 4.449068 GCATGTATATTAGCGCTTGTGTCT 59.551 41.667 18.68 0.00 0.00 3.41
2149 2234 4.664139 CGCATGTATATTAGCGCTTGTGTC 60.664 45.833 18.68 3.11 43.80 3.67
2150 2235 3.184379 CGCATGTATATTAGCGCTTGTGT 59.816 43.478 18.68 5.66 43.80 3.72
2151 2236 3.725356 CGCATGTATATTAGCGCTTGTG 58.275 45.455 18.68 8.07 43.80 3.33
2158 2243 5.576774 TGAGTGTATGCGCATGTATATTAGC 59.423 40.000 32.48 12.60 0.00 3.09
2159 2244 7.043125 GGATGAGTGTATGCGCATGTATATTAG 60.043 40.741 32.48 0.00 0.00 1.73
2160 2245 6.756542 GGATGAGTGTATGCGCATGTATATTA 59.243 38.462 32.48 13.42 0.00 0.98
2161 2246 5.582269 GGATGAGTGTATGCGCATGTATATT 59.418 40.000 32.48 8.90 0.00 1.28
2162 2247 5.105187 AGGATGAGTGTATGCGCATGTATAT 60.105 40.000 32.48 17.68 0.00 0.86
2163 2248 4.220602 AGGATGAGTGTATGCGCATGTATA 59.779 41.667 32.48 10.12 0.00 1.47
2164 2249 3.007290 AGGATGAGTGTATGCGCATGTAT 59.993 43.478 32.48 15.41 0.00 2.29
2165 2250 2.365293 AGGATGAGTGTATGCGCATGTA 59.635 45.455 32.48 17.97 0.00 2.29
2166 2251 1.139654 AGGATGAGTGTATGCGCATGT 59.860 47.619 32.48 11.40 0.00 3.21
2167 2252 1.875009 AGGATGAGTGTATGCGCATG 58.125 50.000 32.48 0.00 0.00 4.06
2168 2253 2.627515 AAGGATGAGTGTATGCGCAT 57.372 45.000 28.23 28.23 0.00 4.73
2169 2254 3.069443 TCATAAGGATGAGTGTATGCGCA 59.931 43.478 14.96 14.96 37.15 6.09
2170 2255 3.653344 TCATAAGGATGAGTGTATGCGC 58.347 45.455 0.00 0.00 37.15 6.09
2171 2256 5.835911 CTTCATAAGGATGAGTGTATGCG 57.164 43.478 0.00 0.00 43.03 4.73
2185 2270 1.135972 GTGCGTGTGTGCCTTCATAAG 60.136 52.381 0.00 0.00 0.00 1.73
2186 2271 0.871722 GTGCGTGTGTGCCTTCATAA 59.128 50.000 0.00 0.00 0.00 1.90
2187 2272 0.250081 TGTGCGTGTGTGCCTTCATA 60.250 50.000 0.00 0.00 0.00 2.15
2188 2273 1.525765 TGTGCGTGTGTGCCTTCAT 60.526 52.632 0.00 0.00 0.00 2.57
2189 2274 2.124942 TGTGCGTGTGTGCCTTCA 60.125 55.556 0.00 0.00 0.00 3.02
2190 2275 2.327940 GTGTGCGTGTGTGCCTTC 59.672 61.111 0.00 0.00 0.00 3.46
2191 2276 3.209097 GGTGTGCGTGTGTGCCTT 61.209 61.111 0.00 0.00 0.00 4.35
2193 2278 3.818121 TAGGGTGTGCGTGTGTGCC 62.818 63.158 0.00 0.00 0.00 5.01
2194 2279 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
2195 2280 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
2196 2281 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
2197 2282 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
2198 2283 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
2199 2284 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
2200 2285 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
2201 2286 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
2202 2287 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
2203 2288 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
2204 2289 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
2205 2290 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
2206 2291 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
2207 2292 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
2208 2293 1.343069 GAGGTGCTCATAGGGGTAGG 58.657 60.000 0.00 0.00 0.00 3.18
2209 2294 1.343069 GGAGGTGCTCATAGGGGTAG 58.657 60.000 0.00 0.00 31.08 3.18
2210 2295 0.469331 CGGAGGTGCTCATAGGGGTA 60.469 60.000 0.00 0.00 31.08 3.69
2211 2296 1.762460 CGGAGGTGCTCATAGGGGT 60.762 63.158 0.00 0.00 31.08 4.95
2212 2297 1.457643 TCGGAGGTGCTCATAGGGG 60.458 63.158 0.00 0.00 31.08 4.79
2213 2298 0.468214 TCTCGGAGGTGCTCATAGGG 60.468 60.000 4.96 0.00 31.08 3.53
2214 2299 0.958091 CTCTCGGAGGTGCTCATAGG 59.042 60.000 4.96 0.00 31.08 2.57
2215 2300 1.606668 GTCTCTCGGAGGTGCTCATAG 59.393 57.143 4.96 0.00 31.08 2.23
2216 2301 1.213182 AGTCTCTCGGAGGTGCTCATA 59.787 52.381 4.96 0.00 31.08 2.15
2217 2302 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.000 4.96 0.00 31.08 2.90
2218 2303 0.962855 CAGTCTCTCGGAGGTGCTCA 60.963 60.000 4.96 0.00 31.08 4.26
2219 2304 0.678366 TCAGTCTCTCGGAGGTGCTC 60.678 60.000 4.96 0.00 0.00 4.26
2220 2305 0.679640 CTCAGTCTCTCGGAGGTGCT 60.680 60.000 4.96 0.00 35.32 4.40
2221 2306 1.806568 CTCAGTCTCTCGGAGGTGC 59.193 63.158 4.96 0.00 35.32 5.01
2222 2307 1.662438 GGCTCAGTCTCTCGGAGGTG 61.662 65.000 4.96 0.00 38.48 4.00
2223 2308 1.379309 GGCTCAGTCTCTCGGAGGT 60.379 63.158 4.96 0.00 38.48 3.85
2224 2309 1.379176 TGGCTCAGTCTCTCGGAGG 60.379 63.158 4.96 0.00 38.48 4.30
2225 2310 2.003658 GCTGGCTCAGTCTCTCGGAG 62.004 65.000 0.00 0.00 40.44 4.63
2226 2311 2.049185 GCTGGCTCAGTCTCTCGGA 61.049 63.158 4.45 0.00 33.43 4.55
2227 2312 1.674764 ATGCTGGCTCAGTCTCTCGG 61.675 60.000 4.45 0.00 33.43 4.63
2228 2313 1.028130 TATGCTGGCTCAGTCTCTCG 58.972 55.000 4.45 0.00 33.43 4.04
2229 2314 2.627221 TGATATGCTGGCTCAGTCTCTC 59.373 50.000 4.45 0.00 33.43 3.20
2230 2315 2.675583 TGATATGCTGGCTCAGTCTCT 58.324 47.619 4.45 0.00 33.43 3.10
2231 2316 3.681593 ATGATATGCTGGCTCAGTCTC 57.318 47.619 4.45 0.00 33.43 3.36
2232 2317 4.434545 AAATGATATGCTGGCTCAGTCT 57.565 40.909 4.45 0.00 33.43 3.24
2233 2318 4.577693 TCAAAATGATATGCTGGCTCAGTC 59.422 41.667 4.45 0.00 33.43 3.51
2234 2319 4.529897 TCAAAATGATATGCTGGCTCAGT 58.470 39.130 4.45 0.00 33.43 3.41
2235 2320 4.820173 TCTCAAAATGATATGCTGGCTCAG 59.180 41.667 0.00 0.00 34.12 3.35
2236 2321 4.784177 TCTCAAAATGATATGCTGGCTCA 58.216 39.130 0.00 0.00 0.00 4.26
2237 2322 5.961396 ATCTCAAAATGATATGCTGGCTC 57.039 39.130 0.00 0.00 0.00 4.70
2238 2323 6.726490 AAATCTCAAAATGATATGCTGGCT 57.274 33.333 0.00 0.00 0.00 4.75
2239 2324 6.580041 CGTAAATCTCAAAATGATATGCTGGC 59.420 38.462 0.00 0.00 0.00 4.85
2240 2325 7.864686 TCGTAAATCTCAAAATGATATGCTGG 58.135 34.615 0.00 0.00 0.00 4.85
2241 2326 9.378597 CTTCGTAAATCTCAAAATGATATGCTG 57.621 33.333 0.00 0.00 0.00 4.41
2242 2327 9.113838 ACTTCGTAAATCTCAAAATGATATGCT 57.886 29.630 0.00 0.00 0.00 3.79
2243 2328 9.374960 GACTTCGTAAATCTCAAAATGATATGC 57.625 33.333 0.00 0.00 0.00 3.14
2246 2331 8.879759 GGTGACTTCGTAAATCTCAAAATGATA 58.120 33.333 0.00 0.00 0.00 2.15
2247 2332 7.390440 TGGTGACTTCGTAAATCTCAAAATGAT 59.610 33.333 0.00 0.00 0.00 2.45
2248 2333 6.708502 TGGTGACTTCGTAAATCTCAAAATGA 59.291 34.615 0.00 0.00 0.00 2.57
2249 2334 6.898041 TGGTGACTTCGTAAATCTCAAAATG 58.102 36.000 0.00 0.00 0.00 2.32
2250 2335 7.687941 ATGGTGACTTCGTAAATCTCAAAAT 57.312 32.000 0.00 0.00 0.00 1.82
2251 2336 7.333423 CCTATGGTGACTTCGTAAATCTCAAAA 59.667 37.037 0.00 0.00 0.00 2.44
2252 2337 6.816640 CCTATGGTGACTTCGTAAATCTCAAA 59.183 38.462 0.00 0.00 0.00 2.69
2253 2338 6.338146 CCTATGGTGACTTCGTAAATCTCAA 58.662 40.000 0.00 0.00 0.00 3.02
2254 2339 5.681437 GCCTATGGTGACTTCGTAAATCTCA 60.681 44.000 0.00 0.00 0.00 3.27
2255 2340 4.745620 GCCTATGGTGACTTCGTAAATCTC 59.254 45.833 0.00 0.00 0.00 2.75
2256 2341 4.694339 GCCTATGGTGACTTCGTAAATCT 58.306 43.478 0.00 0.00 0.00 2.40
2257 2342 3.489785 CGCCTATGGTGACTTCGTAAATC 59.510 47.826 0.00 0.00 34.74 2.17
2258 2343 3.454375 CGCCTATGGTGACTTCGTAAAT 58.546 45.455 0.00 0.00 34.74 1.40
2259 2344 2.883574 CGCCTATGGTGACTTCGTAAA 58.116 47.619 0.00 0.00 34.74 2.01
2260 2345 1.470285 GCGCCTATGGTGACTTCGTAA 60.470 52.381 0.00 0.00 34.74 3.18
2261 2346 0.101759 GCGCCTATGGTGACTTCGTA 59.898 55.000 0.00 0.00 34.74 3.43
2262 2347 1.153628 GCGCCTATGGTGACTTCGT 60.154 57.895 0.00 0.00 34.74 3.85
2263 2348 1.883084 GGCGCCTATGGTGACTTCG 60.883 63.158 22.15 0.00 38.38 3.79
2264 2349 4.126524 GGCGCCTATGGTGACTTC 57.873 61.111 22.15 0.00 38.38 3.01
2267 2352 2.279517 CGAGGCGCCTATGGTGAC 60.280 66.667 32.97 14.51 42.50 3.67
2268 2353 2.758327 ACGAGGCGCCTATGGTGA 60.758 61.111 32.97 0.00 34.74 4.02
2269 2354 2.279517 GACGAGGCGCCTATGGTG 60.280 66.667 32.97 18.94 36.10 4.17
2270 2355 3.900892 CGACGAGGCGCCTATGGT 61.901 66.667 32.97 26.91 0.00 3.55
2271 2356 3.825833 GACGACGAGGCGCCTATGG 62.826 68.421 32.97 23.64 33.86 2.74
2272 2357 2.353607 GACGACGAGGCGCCTATG 60.354 66.667 32.97 27.02 33.86 2.23
2283 2368 1.866496 GACGTTCCCATCGACGACG 60.866 63.158 0.00 0.00 41.53 5.12
2284 2369 0.109412 AAGACGTTCCCATCGACGAC 60.109 55.000 0.00 0.00 41.53 4.34
2285 2370 0.169672 GAAGACGTTCCCATCGACGA 59.830 55.000 0.00 0.00 41.53 4.20
2286 2371 0.170561 AGAAGACGTTCCCATCGACG 59.829 55.000 0.00 0.00 44.34 5.12
2287 2372 1.469423 GGAGAAGACGTTCCCATCGAC 60.469 57.143 0.00 0.00 32.48 4.20
2288 2373 0.815734 GGAGAAGACGTTCCCATCGA 59.184 55.000 0.00 0.00 32.48 3.59
2289 2374 3.347411 GGAGAAGACGTTCCCATCG 57.653 57.895 0.00 0.00 32.48 3.84
2294 2379 0.966920 TCAGTGGGAGAAGACGTTCC 59.033 55.000 0.00 0.00 32.48 3.62
2295 2380 2.814280 TTCAGTGGGAGAAGACGTTC 57.186 50.000 0.00 0.00 0.00 3.95
2296 2381 3.203716 GTTTTCAGTGGGAGAAGACGTT 58.796 45.455 0.00 0.00 0.00 3.99
2297 2382 2.802057 CGTTTTCAGTGGGAGAAGACGT 60.802 50.000 9.81 0.00 43.96 4.34
2298 2383 1.792949 CGTTTTCAGTGGGAGAAGACG 59.207 52.381 4.95 4.95 43.68 4.18
2299 2384 1.531578 GCGTTTTCAGTGGGAGAAGAC 59.468 52.381 0.00 0.00 0.00 3.01
2300 2385 1.140052 TGCGTTTTCAGTGGGAGAAGA 59.860 47.619 0.00 0.00 0.00 2.87
2301 2386 1.593196 TGCGTTTTCAGTGGGAGAAG 58.407 50.000 0.00 0.00 0.00 2.85
2302 2387 2.270352 ATGCGTTTTCAGTGGGAGAA 57.730 45.000 0.00 0.00 0.00 2.87
2303 2388 1.879380 CAATGCGTTTTCAGTGGGAGA 59.121 47.619 0.00 0.00 0.00 3.71
2304 2389 1.666888 GCAATGCGTTTTCAGTGGGAG 60.667 52.381 0.00 0.00 33.17 4.30
2305 2390 0.313672 GCAATGCGTTTTCAGTGGGA 59.686 50.000 0.00 0.00 33.17 4.37
2306 2391 0.667184 GGCAATGCGTTTTCAGTGGG 60.667 55.000 0.00 0.00 33.17 4.61
2307 2392 1.003262 CGGCAATGCGTTTTCAGTGG 61.003 55.000 0.00 0.00 33.17 4.00
2308 2393 0.040514 TCGGCAATGCGTTTTCAGTG 60.041 50.000 0.00 0.00 35.39 3.66
2309 2394 0.665835 TTCGGCAATGCGTTTTCAGT 59.334 45.000 0.00 0.00 0.00 3.41
2310 2395 1.764851 TTTCGGCAATGCGTTTTCAG 58.235 45.000 0.00 0.00 0.00 3.02
2311 2396 2.209838 TTTTCGGCAATGCGTTTTCA 57.790 40.000 0.00 0.00 0.00 2.69
2312 2397 2.092055 GGATTTTCGGCAATGCGTTTTC 59.908 45.455 0.00 0.00 0.00 2.29
2313 2398 2.065512 GGATTTTCGGCAATGCGTTTT 58.934 42.857 0.00 0.00 0.00 2.43
2314 2399 1.272212 AGGATTTTCGGCAATGCGTTT 59.728 42.857 0.00 0.00 30.14 3.60
2315 2400 0.887933 AGGATTTTCGGCAATGCGTT 59.112 45.000 0.00 0.00 30.14 4.84
2316 2401 0.171007 CAGGATTTTCGGCAATGCGT 59.829 50.000 0.00 0.00 30.14 5.24
2317 2402 0.451383 TCAGGATTTTCGGCAATGCG 59.549 50.000 0.00 0.00 30.14 4.73
2318 2403 2.652941 TTCAGGATTTTCGGCAATGC 57.347 45.000 0.00 0.00 0.00 3.56
2319 2404 7.042523 GGATTTATTTCAGGATTTTCGGCAATG 60.043 37.037 0.00 0.00 0.00 2.82
2320 2405 6.986231 GGATTTATTTCAGGATTTTCGGCAAT 59.014 34.615 0.00 0.00 0.00 3.56
2321 2406 6.071108 TGGATTTATTTCAGGATTTTCGGCAA 60.071 34.615 0.00 0.00 0.00 4.52
2322 2407 5.420421 TGGATTTATTTCAGGATTTTCGGCA 59.580 36.000 0.00 0.00 0.00 5.69
2323 2408 5.901552 TGGATTTATTTCAGGATTTTCGGC 58.098 37.500 0.00 0.00 0.00 5.54
2324 2409 7.333528 TCTGGATTTATTTCAGGATTTTCGG 57.666 36.000 0.00 0.00 0.00 4.30
2325 2410 9.807649 ATTTCTGGATTTATTTCAGGATTTTCG 57.192 29.630 0.00 0.00 0.00 3.46
2331 2416 9.146586 CCCATTATTTCTGGATTTATTTCAGGA 57.853 33.333 0.00 0.00 35.70 3.86
2332 2417 9.146586 TCCCATTATTTCTGGATTTATTTCAGG 57.853 33.333 0.00 0.00 35.70 3.86
2334 2419 8.641541 GCTCCCATTATTTCTGGATTTATTTCA 58.358 33.333 0.00 0.00 35.70 2.69
2335 2420 8.641541 TGCTCCCATTATTTCTGGATTTATTTC 58.358 33.333 0.00 0.00 35.70 2.17
2336 2421 8.424133 GTGCTCCCATTATTTCTGGATTTATTT 58.576 33.333 0.00 0.00 35.70 1.40
2337 2422 7.015584 GGTGCTCCCATTATTTCTGGATTTATT 59.984 37.037 0.00 0.00 35.70 1.40
2338 2423 6.494835 GGTGCTCCCATTATTTCTGGATTTAT 59.505 38.462 0.00 0.00 35.70 1.40
2339 2424 5.833131 GGTGCTCCCATTATTTCTGGATTTA 59.167 40.000 0.00 0.00 35.70 1.40
2340 2425 4.651045 GGTGCTCCCATTATTTCTGGATTT 59.349 41.667 0.00 0.00 35.70 2.17
2341 2426 4.218312 GGTGCTCCCATTATTTCTGGATT 58.782 43.478 0.00 0.00 35.70 3.01
2342 2427 3.205056 TGGTGCTCCCATTATTTCTGGAT 59.795 43.478 1.59 0.00 38.72 3.41
2343 2428 2.580322 TGGTGCTCCCATTATTTCTGGA 59.420 45.455 1.59 0.00 38.72 3.86
2344 2429 2.954318 CTGGTGCTCCCATTATTTCTGG 59.046 50.000 1.59 0.00 44.15 3.86
2345 2430 2.954318 CCTGGTGCTCCCATTATTTCTG 59.046 50.000 1.59 0.00 44.15 3.02
2346 2431 2.852449 TCCTGGTGCTCCCATTATTTCT 59.148 45.455 1.59 0.00 44.15 2.52
2347 2432 3.297134 TCCTGGTGCTCCCATTATTTC 57.703 47.619 1.59 0.00 44.15 2.17
2348 2433 3.979501 ATCCTGGTGCTCCCATTATTT 57.020 42.857 1.59 0.00 44.15 1.40
2349 2434 3.962718 CAAATCCTGGTGCTCCCATTATT 59.037 43.478 1.59 0.73 44.15 1.40
2350 2435 3.205056 TCAAATCCTGGTGCTCCCATTAT 59.795 43.478 1.59 0.00 44.15 1.28
2351 2436 2.580322 TCAAATCCTGGTGCTCCCATTA 59.420 45.455 1.59 0.00 44.15 1.90
2352 2437 1.358787 TCAAATCCTGGTGCTCCCATT 59.641 47.619 1.59 0.00 44.15 3.16
2353 2438 1.002069 TCAAATCCTGGTGCTCCCAT 58.998 50.000 1.59 0.00 44.15 4.00
2354 2439 0.776810 TTCAAATCCTGGTGCTCCCA 59.223 50.000 1.59 0.00 42.51 4.37
2355 2440 1.177401 GTTCAAATCCTGGTGCTCCC 58.823 55.000 1.59 0.00 0.00 4.30
2356 2441 1.177401 GGTTCAAATCCTGGTGCTCC 58.823 55.000 0.00 0.00 0.00 4.70
2357 2442 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
2358 2443 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
2359 2444 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
2375 2460 0.478507 GGTATCCCCAACCCATCAGG 59.521 60.000 0.00 0.00 43.78 3.86
2376 2461 1.221635 TGGTATCCCCAACCCATCAG 58.778 55.000 0.00 0.00 41.50 2.90
2377 2462 3.444955 TGGTATCCCCAACCCATCA 57.555 52.632 0.00 0.00 41.50 3.07
2385 2470 0.912487 GGTGGACAGTGGTATCCCCA 60.912 60.000 0.00 0.00 42.51 4.96
2386 2471 0.620700 AGGTGGACAGTGGTATCCCC 60.621 60.000 0.00 0.00 33.69 4.81
2387 2472 2.169978 GTTAGGTGGACAGTGGTATCCC 59.830 54.545 0.00 0.00 33.69 3.85
2388 2473 2.169978 GGTTAGGTGGACAGTGGTATCC 59.830 54.545 0.00 0.00 35.37 2.59
2389 2474 2.835764 TGGTTAGGTGGACAGTGGTATC 59.164 50.000 0.00 0.00 0.00 2.24
2390 2475 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
2391 2476 2.402182 TGGTTAGGTGGACAGTGGTA 57.598 50.000 0.00 0.00 0.00 3.25
2392 2477 1.628846 GATGGTTAGGTGGACAGTGGT 59.371 52.381 0.00 0.00 0.00 4.16
2393 2478 1.909302 AGATGGTTAGGTGGACAGTGG 59.091 52.381 0.00 0.00 0.00 4.00
2394 2479 3.703001 AAGATGGTTAGGTGGACAGTG 57.297 47.619 0.00 0.00 0.00 3.66
2395 2480 4.019591 GGTTAAGATGGTTAGGTGGACAGT 60.020 45.833 0.00 0.00 0.00 3.55
2396 2481 4.019681 TGGTTAAGATGGTTAGGTGGACAG 60.020 45.833 0.00 0.00 0.00 3.51
2397 2482 3.911260 TGGTTAAGATGGTTAGGTGGACA 59.089 43.478 0.00 0.00 0.00 4.02
2398 2483 4.259356 GTGGTTAAGATGGTTAGGTGGAC 58.741 47.826 0.00 0.00 0.00 4.02
2399 2484 3.911260 TGTGGTTAAGATGGTTAGGTGGA 59.089 43.478 0.00 0.00 0.00 4.02
2400 2485 4.261801 CTGTGGTTAAGATGGTTAGGTGG 58.738 47.826 0.00 0.00 0.00 4.61
2401 2486 4.261801 CCTGTGGTTAAGATGGTTAGGTG 58.738 47.826 0.00 0.00 0.00 4.00
2402 2487 3.914435 ACCTGTGGTTAAGATGGTTAGGT 59.086 43.478 0.00 0.00 27.29 3.08
2403 2488 4.569719 ACCTGTGGTTAAGATGGTTAGG 57.430 45.455 0.00 0.00 27.29 2.69
2404 2489 5.556915 TCAACCTGTGGTTAAGATGGTTAG 58.443 41.667 1.34 0.00 45.01 2.34
2405 2490 5.570205 TCAACCTGTGGTTAAGATGGTTA 57.430 39.130 1.34 0.00 45.01 2.85
2406 2491 4.447138 TCAACCTGTGGTTAAGATGGTT 57.553 40.909 1.34 0.00 45.01 3.67
2407 2492 4.657814 ATCAACCTGTGGTTAAGATGGT 57.342 40.909 1.34 0.00 45.01 3.55
2408 2493 5.009631 TGAATCAACCTGTGGTTAAGATGG 58.990 41.667 1.34 0.00 45.01 3.51
2409 2494 5.390885 CGTGAATCAACCTGTGGTTAAGATG 60.391 44.000 1.34 0.00 45.01 2.90
2410 2495 4.695455 CGTGAATCAACCTGTGGTTAAGAT 59.305 41.667 1.34 0.00 45.01 2.40
2411 2496 4.062293 CGTGAATCAACCTGTGGTTAAGA 58.938 43.478 1.34 0.00 45.01 2.10
2412 2497 4.062293 TCGTGAATCAACCTGTGGTTAAG 58.938 43.478 1.34 0.00 45.01 1.85
2413 2498 4.074627 TCGTGAATCAACCTGTGGTTAA 57.925 40.909 1.34 0.00 45.01 2.01
2414 2499 3.755112 TCGTGAATCAACCTGTGGTTA 57.245 42.857 1.34 0.00 45.01 2.85
2416 2501 2.631160 TTCGTGAATCAACCTGTGGT 57.369 45.000 0.00 0.00 37.65 4.16
2417 2502 3.138304 TCTTTCGTGAATCAACCTGTGG 58.862 45.455 0.00 0.00 0.00 4.17
2418 2503 5.362556 AATCTTTCGTGAATCAACCTGTG 57.637 39.130 0.00 0.00 0.00 3.66
2419 2504 6.485313 TGTTAATCTTTCGTGAATCAACCTGT 59.515 34.615 0.00 0.00 0.00 4.00
2420 2505 6.898041 TGTTAATCTTTCGTGAATCAACCTG 58.102 36.000 0.00 0.00 0.00 4.00
2421 2506 6.710744 ACTGTTAATCTTTCGTGAATCAACCT 59.289 34.615 0.00 0.00 0.00 3.50
2422 2507 6.899114 ACTGTTAATCTTTCGTGAATCAACC 58.101 36.000 0.00 0.00 0.00 3.77
2423 2508 8.283291 AGAACTGTTAATCTTTCGTGAATCAAC 58.717 33.333 0.00 0.00 0.00 3.18
2424 2509 8.282592 CAGAACTGTTAATCTTTCGTGAATCAA 58.717 33.333 0.00 0.00 0.00 2.57
2425 2510 7.095229 CCAGAACTGTTAATCTTTCGTGAATCA 60.095 37.037 0.00 0.00 0.00 2.57
2426 2511 7.095187 ACCAGAACTGTTAATCTTTCGTGAATC 60.095 37.037 0.00 0.00 0.00 2.52
2427 2512 6.710744 ACCAGAACTGTTAATCTTTCGTGAAT 59.289 34.615 0.00 0.00 0.00 2.57
2428 2513 6.053005 ACCAGAACTGTTAATCTTTCGTGAA 58.947 36.000 0.00 0.00 0.00 3.18
2429 2514 5.607477 ACCAGAACTGTTAATCTTTCGTGA 58.393 37.500 0.00 0.00 0.00 4.35
2430 2515 5.924475 ACCAGAACTGTTAATCTTTCGTG 57.076 39.130 0.00 0.00 0.00 4.35
2431 2516 5.176958 CGAACCAGAACTGTTAATCTTTCGT 59.823 40.000 12.10 0.00 34.02 3.85
2432 2517 5.176958 ACGAACCAGAACTGTTAATCTTTCG 59.823 40.000 15.94 15.94 39.76 3.46
2433 2518 6.541111 ACGAACCAGAACTGTTAATCTTTC 57.459 37.500 0.00 0.00 0.00 2.62
2434 2519 7.215085 AGTACGAACCAGAACTGTTAATCTTT 58.785 34.615 0.00 0.00 0.00 2.52
2435 2520 6.756221 AGTACGAACCAGAACTGTTAATCTT 58.244 36.000 0.00 0.00 0.00 2.40
2436 2521 6.342338 AGTACGAACCAGAACTGTTAATCT 57.658 37.500 0.00 0.00 0.00 2.40
2437 2522 7.311408 AGTAGTACGAACCAGAACTGTTAATC 58.689 38.462 0.00 0.00 0.00 1.75
2471 2556 1.069500 GTGAAACGCGTAGTGGCAAAT 60.069 47.619 14.46 0.00 45.78 2.32
2472 2557 0.305313 GTGAAACGCGTAGTGGCAAA 59.695 50.000 14.46 0.00 45.78 3.68
2479 2564 0.854062 TTTCACGGTGAAACGCGTAG 59.146 50.000 27.49 2.55 41.02 3.51
2499 2584 1.256812 GCCTTGCCATAACAACCACT 58.743 50.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.