Multiple sequence alignment - TraesCS3B01G268500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G268500 chr3B 100.000 2826 0 0 1 2826 431991221 431988396 0.000000e+00 5219.0
1 TraesCS3B01G268500 chr3B 91.304 115 9 1 2713 2826 736671067 736671181 3.770000e-34 156.0
2 TraesCS3B01G268500 chr3A 92.367 1297 70 15 916 2193 450304423 450303137 0.000000e+00 1820.0
3 TraesCS3B01G268500 chr3A 95.035 282 6 2 2188 2461 608488386 608488667 1.200000e-118 436.0
4 TraesCS3B01G268500 chr3A 94.386 285 8 2 2191 2467 24896944 24896660 5.590000e-117 431.0
5 TraesCS3B01G268500 chr3A 94.681 282 7 2 2189 2462 37807802 37807521 5.590000e-117 431.0
6 TraesCS3B01G268500 chr3A 90.602 266 8 7 2458 2719 450303140 450302888 1.250000e-88 337.0
7 TraesCS3B01G268500 chr3D 91.731 1294 80 17 916 2193 332804528 332803246 0.000000e+00 1772.0
8 TraesCS3B01G268500 chr3D 91.078 269 14 4 2458 2717 332803249 332802982 3.460000e-94 355.0
9 TraesCS3B01G268500 chr3D 90.517 116 10 1 2712 2826 337492496 337492381 4.880000e-33 152.0
10 TraesCS3B01G268500 chr3D 91.150 113 9 1 2715 2826 532240006 532240118 4.880000e-33 152.0
11 TraesCS3B01G268500 chr1B 92.374 931 51 9 3 917 562616961 562617887 0.000000e+00 1308.0
12 TraesCS3B01G268500 chr1B 91.150 113 8 2 2715 2826 615588151 615588040 4.880000e-33 152.0
13 TraesCS3B01G268500 chr1B 84.375 128 8 7 1387 1511 659997728 659997846 6.400000e-22 115.0
14 TraesCS3B01G268500 chr1B 78.109 201 25 11 1326 1514 659975229 659975422 2.980000e-20 110.0
15 TraesCS3B01G268500 chr2B 92.275 932 52 11 1 917 105381108 105380182 0.000000e+00 1304.0
16 TraesCS3B01G268500 chr2B 90.890 933 44 17 1 920 123176345 123175441 0.000000e+00 1214.0
17 TraesCS3B01G268500 chr2B 94.536 787 29 7 3 780 545165963 545166744 0.000000e+00 1203.0
18 TraesCS3B01G268500 chr2B 94.866 409 12 2 359 759 680797556 680797963 5.140000e-177 630.0
19 TraesCS3B01G268500 chr2B 86.268 284 31 3 2188 2463 764144563 764144846 4.580000e-78 302.0
20 TraesCS3B01G268500 chr6B 92.176 933 51 10 4 917 712098871 712097942 0.000000e+00 1299.0
21 TraesCS3B01G268500 chr6B 91.738 932 46 15 3 920 93915059 93914145 0.000000e+00 1266.0
22 TraesCS3B01G268500 chr6B 83.137 255 36 4 2235 2487 177279527 177279278 2.830000e-55 226.0
23 TraesCS3B01G268500 chr4B 92.069 933 57 7 3 921 422782942 422783871 0.000000e+00 1297.0
24 TraesCS3B01G268500 chr4B 93.127 291 8 4 2193 2475 14000290 14000004 1.570000e-112 416.0
25 TraesCS3B01G268500 chr4B 91.694 301 15 4 2193 2484 522397857 522398156 2.620000e-110 409.0
26 TraesCS3B01G268500 chr4B 91.071 112 10 0 2715 2826 564881239 564881350 4.880000e-33 152.0
27 TraesCS3B01G268500 chr4B 87.023 131 14 2 2697 2826 89292680 89292808 8.160000e-31 145.0
28 TraesCS3B01G268500 chr5B 91.944 931 59 7 3 921 284158692 284157766 0.000000e+00 1290.0
29 TraesCS3B01G268500 chr5B 91.404 919 60 9 15 917 404185122 404184207 0.000000e+00 1242.0
30 TraesCS3B01G268500 chr5B 93.916 789 36 4 14 790 596980486 596981274 0.000000e+00 1181.0
31 TraesCS3B01G268500 chr5B 94.293 771 33 4 15 776 64718023 64718791 0.000000e+00 1170.0
32 TraesCS3B01G268500 chr5B 89.565 920 58 16 3 917 505296506 505297392 0.000000e+00 1133.0
33 TraesCS3B01G268500 chr7B 84.845 937 104 21 2 917 640347639 640346720 0.000000e+00 909.0
34 TraesCS3B01G268500 chr7B 93.581 296 9 4 2176 2462 500771509 500771803 1.550000e-117 433.0
35 TraesCS3B01G268500 chr7B 89.744 117 11 1 2711 2826 700398255 700398139 6.310000e-32 148.0
36 TraesCS3B01G268500 chr7B 90.741 54 4 1 2419 2472 119705888 119705836 1.400000e-08 71.3
37 TraesCS3B01G268500 chr2A 88.105 723 67 10 3 710 447000196 447000914 0.000000e+00 841.0
38 TraesCS3B01G268500 chr2A 95.000 280 6 2 2190 2461 773800400 773800679 1.550000e-117 433.0
39 TraesCS3B01G268500 chr2A 92.667 300 11 5 2174 2465 513096591 513096295 3.370000e-114 422.0
40 TraesCS3B01G268500 chr5A 87.955 714 69 8 14 711 623506771 623506059 0.000000e+00 826.0
41 TraesCS3B01G268500 chr5A 95.018 281 6 2 2191 2463 151259435 151259715 4.320000e-118 435.0
42 TraesCS3B01G268500 chr5A 94.681 282 7 2 2190 2463 670621311 670621030 5.590000e-117 431.0
43 TraesCS3B01G268500 chr7A 94.366 284 8 2 2191 2466 231100602 231100319 2.010000e-116 429.0
44 TraesCS3B01G268500 chr1A 93.333 285 11 2 2193 2469 30543067 30543351 5.630000e-112 414.0
45 TraesCS3B01G268500 chr1A 84.516 155 22 2 765 917 10952547 10952701 4.880000e-33 152.0
46 TraesCS3B01G268500 chr1A 91.150 113 9 1 2715 2826 118503823 118503711 4.880000e-33 152.0
47 TraesCS3B01G268500 chr1A 84.091 132 9 8 1385 1513 570265513 570265635 1.780000e-22 117.0
48 TraesCS3B01G268500 chr5D 90.426 188 17 1 2285 2472 223261529 223261715 2.170000e-61 246.0
49 TraesCS3B01G268500 chr4A 80.523 344 36 13 595 921 6917736 6918065 4.710000e-58 235.0
50 TraesCS3B01G268500 chr6A 91.892 111 8 1 2716 2825 116334624 116334514 1.360000e-33 154.0
51 TraesCS3B01G268500 chr6A 83.432 169 22 5 757 920 572160099 572159932 4.880000e-33 152.0
52 TraesCS3B01G268500 chr1D 82.584 178 28 3 748 922 335079074 335079251 1.360000e-33 154.0
53 TraesCS3B01G268500 chr1D 74.185 368 58 26 1162 1503 474725849 474726205 4.950000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G268500 chr3B 431988396 431991221 2825 True 5219.0 5219 100.0000 1 2826 1 chr3B.!!$R1 2825
1 TraesCS3B01G268500 chr3A 450302888 450304423 1535 True 1078.5 1820 91.4845 916 2719 2 chr3A.!!$R3 1803
2 TraesCS3B01G268500 chr3D 332802982 332804528 1546 True 1063.5 1772 91.4045 916 2717 2 chr3D.!!$R2 1801
3 TraesCS3B01G268500 chr1B 562616961 562617887 926 False 1308.0 1308 92.3740 3 917 1 chr1B.!!$F1 914
4 TraesCS3B01G268500 chr2B 105380182 105381108 926 True 1304.0 1304 92.2750 1 917 1 chr2B.!!$R1 916
5 TraesCS3B01G268500 chr2B 123175441 123176345 904 True 1214.0 1214 90.8900 1 920 1 chr2B.!!$R2 919
6 TraesCS3B01G268500 chr2B 545165963 545166744 781 False 1203.0 1203 94.5360 3 780 1 chr2B.!!$F1 777
7 TraesCS3B01G268500 chr6B 712097942 712098871 929 True 1299.0 1299 92.1760 4 917 1 chr6B.!!$R3 913
8 TraesCS3B01G268500 chr6B 93914145 93915059 914 True 1266.0 1266 91.7380 3 920 1 chr6B.!!$R1 917
9 TraesCS3B01G268500 chr4B 422782942 422783871 929 False 1297.0 1297 92.0690 3 921 1 chr4B.!!$F2 918
10 TraesCS3B01G268500 chr5B 284157766 284158692 926 True 1290.0 1290 91.9440 3 921 1 chr5B.!!$R1 918
11 TraesCS3B01G268500 chr5B 404184207 404185122 915 True 1242.0 1242 91.4040 15 917 1 chr5B.!!$R2 902
12 TraesCS3B01G268500 chr5B 596980486 596981274 788 False 1181.0 1181 93.9160 14 790 1 chr5B.!!$F3 776
13 TraesCS3B01G268500 chr5B 64718023 64718791 768 False 1170.0 1170 94.2930 15 776 1 chr5B.!!$F1 761
14 TraesCS3B01G268500 chr5B 505296506 505297392 886 False 1133.0 1133 89.5650 3 917 1 chr5B.!!$F2 914
15 TraesCS3B01G268500 chr7B 640346720 640347639 919 True 909.0 909 84.8450 2 917 1 chr7B.!!$R2 915
16 TraesCS3B01G268500 chr2A 447000196 447000914 718 False 841.0 841 88.1050 3 710 1 chr2A.!!$F1 707
17 TraesCS3B01G268500 chr5A 623506059 623506771 712 True 826.0 826 87.9550 14 711 1 chr5A.!!$R1 697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
862 920 0.038526 CGCTAAACCAGACGACAGGT 60.039 55.0 0.0 0.0 37.51 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2439 2522 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
481 483 2.835701 GAATGCGCAGTCCGACCTCA 62.836 60.000 26.45 0.00 40.02 3.86
552 554 3.031736 GGACATCTGGCTAACTACCTCA 58.968 50.000 0.00 0.00 0.00 3.86
553 555 3.451178 GGACATCTGGCTAACTACCTCAA 59.549 47.826 0.00 0.00 0.00 3.02
567 569 1.952133 CTCAAACGACACCGCCGAA 60.952 57.895 0.00 0.00 39.95 4.30
749 787 8.458843 GCTTTCAATGCCTACATTTCTAGTTTA 58.541 33.333 0.00 0.00 44.21 2.01
777 831 3.084686 CGTGTGCGCTGCATTTTTA 57.915 47.368 9.73 0.00 41.91 1.52
780 835 0.309302 TGTGCGCTGCATTTTTACGT 59.691 45.000 9.73 0.00 41.91 3.57
781 836 1.531578 TGTGCGCTGCATTTTTACGTA 59.468 42.857 9.73 0.00 41.91 3.57
790 845 3.815962 TGCATTTTTACGTACTGCTGGAA 59.184 39.130 15.42 0.00 34.02 3.53
793 850 3.367992 TTTTACGTACTGCTGGAACGA 57.632 42.857 21.52 7.76 39.80 3.85
858 916 2.442188 CCGCGCTAAACCAGACGAC 61.442 63.158 5.56 0.00 0.00 4.34
859 917 1.731613 CGCGCTAAACCAGACGACA 60.732 57.895 5.56 0.00 0.00 4.35
862 920 0.038526 CGCTAAACCAGACGACAGGT 60.039 55.000 0.00 0.00 37.51 4.00
928 988 0.729690 GATGCTCTCAGGCCGAAAAC 59.270 55.000 0.00 0.00 0.00 2.43
931 991 1.578206 GCTCTCAGGCCGAAAACACC 61.578 60.000 0.00 0.00 0.00 4.16
967 1027 0.039165 GCAAAAGGAAGGAAGCCACG 60.039 55.000 0.00 0.00 0.00 4.94
1148 1210 3.446570 CCCGTCCTACCGTTCGCT 61.447 66.667 0.00 0.00 0.00 4.93
1558 1620 1.003355 CGGAGGAAGGAAGCAGCAA 60.003 57.895 0.00 0.00 0.00 3.91
1738 1806 1.554160 TCCCCCGTTCTAATGCGTTTA 59.446 47.619 0.00 0.00 0.00 2.01
1761 1829 1.476477 GCTTCTCTCTCTACCCCGTT 58.524 55.000 0.00 0.00 0.00 4.44
1770 1838 7.723324 TCTCTCTCTACCCCGTTAATATTTTG 58.277 38.462 0.00 0.00 0.00 2.44
1792 1861 9.973450 TTTTGTGTTTTGTGTGCATAATAGTAT 57.027 25.926 0.00 0.00 0.00 2.12
1882 1956 7.014808 TGCTTGGCTAAGGTAAATGTAAAAACT 59.985 33.333 12.16 0.00 34.40 2.66
1888 1962 7.959109 GCTAAGGTAAATGTAAAAACTACACCG 59.041 37.037 0.00 0.00 0.00 4.94
1906 1980 4.462834 ACACCGTCTCAACAATAGAGATCA 59.537 41.667 0.00 0.00 43.41 2.92
1915 1989 7.068103 TCTCAACAATAGAGATCAGAGAAGGAC 59.932 40.741 0.00 0.00 37.22 3.85
1946 2023 4.150897 TGTAGGTTCTCTGTTTGCTTGT 57.849 40.909 0.00 0.00 0.00 3.16
1948 2025 5.865085 TGTAGGTTCTCTGTTTGCTTGTAT 58.135 37.500 0.00 0.00 0.00 2.29
1949 2026 5.700832 TGTAGGTTCTCTGTTTGCTTGTATG 59.299 40.000 0.00 0.00 0.00 2.39
1953 2030 5.181245 GGTTCTCTGTTTGCTTGTATGCTTA 59.819 40.000 0.00 0.00 0.00 3.09
1962 2039 5.862924 TGCTTGTATGCTTAAGTCAGAAC 57.137 39.130 4.02 6.35 0.00 3.01
1963 2040 5.551233 TGCTTGTATGCTTAAGTCAGAACT 58.449 37.500 4.02 0.00 37.32 3.01
1964 2041 5.409520 TGCTTGTATGCTTAAGTCAGAACTG 59.590 40.000 4.02 0.00 35.36 3.16
1965 2042 5.672321 GCTTGTATGCTTAAGTCAGAACTGC 60.672 44.000 4.02 9.60 35.36 4.40
1966 2043 3.926527 TGTATGCTTAAGTCAGAACTGCG 59.073 43.478 4.02 0.00 35.36 5.18
1968 2045 2.833794 TGCTTAAGTCAGAACTGCGTT 58.166 42.857 4.02 0.00 35.36 4.84
1970 2047 2.800544 GCTTAAGTCAGAACTGCGTTCA 59.199 45.455 18.86 2.15 44.11 3.18
1971 2048 3.433615 GCTTAAGTCAGAACTGCGTTCAT 59.566 43.478 18.86 6.11 44.11 2.57
1983 2064 2.719046 CTGCGTTCATTTTGTTCGTTCC 59.281 45.455 0.00 0.00 0.00 3.62
1988 2069 4.609559 CGTTCATTTTGTTCGTTCCGATCA 60.610 41.667 0.00 0.00 35.23 2.92
1990 2071 5.216566 TCATTTTGTTCGTTCCGATCATC 57.783 39.130 0.00 0.00 35.88 2.92
1998 2079 5.008217 TGTTCGTTCCGATCATCTTGTTTTT 59.992 36.000 0.00 0.00 35.23 1.94
1999 2080 5.277601 TCGTTCCGATCATCTTGTTTTTC 57.722 39.130 0.00 0.00 0.00 2.29
2010 2091 8.859236 ATCATCTTGTTTTTCTCAATCTCAGA 57.141 30.769 0.00 0.00 0.00 3.27
2014 2095 9.956640 ATCTTGTTTTTCTCAATCTCAGAGTAT 57.043 29.630 0.00 0.00 34.73 2.12
2016 2097 8.908786 TTGTTTTTCTCAATCTCAGAGTATGT 57.091 30.769 0.00 0.00 34.73 2.29
2018 2099 8.993121 TGTTTTTCTCAATCTCAGAGTATGTTC 58.007 33.333 0.00 0.00 34.73 3.18
2019 2100 8.447053 GTTTTTCTCAATCTCAGAGTATGTTCC 58.553 37.037 0.00 0.00 34.73 3.62
2020 2101 7.487822 TTTCTCAATCTCAGAGTATGTTCCT 57.512 36.000 0.00 0.00 34.73 3.36
2021 2102 6.707440 TCTCAATCTCAGAGTATGTTCCTC 57.293 41.667 0.00 0.00 34.73 3.71
2022 2103 6.430864 TCTCAATCTCAGAGTATGTTCCTCT 58.569 40.000 0.00 0.00 39.87 3.69
2024 2105 7.068103 TCTCAATCTCAGAGTATGTTCCTCTTC 59.932 40.741 0.00 0.00 37.18 2.87
2025 2106 6.894654 TCAATCTCAGAGTATGTTCCTCTTCT 59.105 38.462 0.00 0.00 37.18 2.85
2026 2107 8.055790 TCAATCTCAGAGTATGTTCCTCTTCTA 58.944 37.037 0.00 0.00 37.18 2.10
2030 2111 7.284261 TCTCAGAGTATGTTCCTCTTCTACATG 59.716 40.741 0.00 0.00 37.18 3.21
2033 2114 7.704472 CAGAGTATGTTCCTCTTCTACATGTTC 59.296 40.741 2.30 0.00 37.18 3.18
2037 2118 6.114187 TGTTCCTCTTCTACATGTTCATGT 57.886 37.500 19.83 19.83 38.49 3.21
2039 2120 6.427853 TGTTCCTCTTCTACATGTTCATGTTG 59.572 38.462 20.87 18.63 36.08 3.33
2040 2121 6.358974 TCCTCTTCTACATGTTCATGTTGA 57.641 37.500 20.87 20.29 35.23 3.18
2042 2123 6.820152 TCCTCTTCTACATGTTCATGTTGATG 59.180 38.462 22.58 22.82 36.50 3.07
2044 2125 6.175471 TCTTCTACATGTTCATGTTGATGCT 58.825 36.000 22.58 3.88 36.50 3.79
2045 2126 6.656270 TCTTCTACATGTTCATGTTGATGCTT 59.344 34.615 22.58 3.31 36.50 3.91
2046 2127 6.426980 TCTACATGTTCATGTTGATGCTTC 57.573 37.500 20.87 0.00 36.08 3.86
2047 2128 6.175471 TCTACATGTTCATGTTGATGCTTCT 58.825 36.000 20.87 0.00 36.08 2.85
2048 2129 7.330262 TCTACATGTTCATGTTGATGCTTCTA 58.670 34.615 20.87 1.71 36.08 2.10
2049 2130 7.989170 TCTACATGTTCATGTTGATGCTTCTAT 59.011 33.333 20.87 0.00 36.08 1.98
2050 2131 9.264719 CTACATGTTCATGTTGATGCTTCTATA 57.735 33.333 20.87 1.10 36.08 1.31
2051 2132 8.687292 ACATGTTCATGTTGATGCTTCTATAT 57.313 30.769 11.97 0.00 0.00 0.86
2052 2133 9.128404 ACATGTTCATGTTGATGCTTCTATATT 57.872 29.630 11.97 0.00 0.00 1.28
2053 2134 9.394477 CATGTTCATGTTGATGCTTCTATATTG 57.606 33.333 4.80 0.00 0.00 1.90
2054 2135 8.735692 TGTTCATGTTGATGCTTCTATATTGA 57.264 30.769 0.88 0.00 0.00 2.57
2055 2136 9.176460 TGTTCATGTTGATGCTTCTATATTGAA 57.824 29.630 0.88 0.00 0.00 2.69
2058 2139 8.843262 TCATGTTGATGCTTCTATATTGAAAGG 58.157 33.333 1.32 0.00 0.00 3.11
2077 2158 9.757227 TTGAAAGGATTTTGTATGTTTGTTAGG 57.243 29.630 0.00 0.00 39.27 2.69
2121 2204 5.032220 GTGTAACCTCTTTGTTTTGTTCGG 58.968 41.667 0.00 0.00 0.00 4.30
2189 2272 9.309796 GTTGATTTTAATACTGTGACGTTGTAC 57.690 33.333 0.00 0.00 0.00 2.90
2190 2273 8.821147 TGATTTTAATACTGTGACGTTGTACT 57.179 30.769 0.00 0.00 0.00 2.73
2191 2274 9.911138 TGATTTTAATACTGTGACGTTGTACTA 57.089 29.630 0.00 0.00 0.00 1.82
2194 2277 8.746922 TTTAATACTGTGACGTTGTACTAAGG 57.253 34.615 0.00 0.00 0.00 2.69
2195 2278 3.022607 ACTGTGACGTTGTACTAAGGC 57.977 47.619 0.00 0.00 0.00 4.35
2196 2279 2.626743 ACTGTGACGTTGTACTAAGGCT 59.373 45.455 0.00 0.00 0.00 4.58
2197 2280 2.987149 CTGTGACGTTGTACTAAGGCTG 59.013 50.000 0.00 0.00 0.00 4.85
2198 2281 2.288579 TGTGACGTTGTACTAAGGCTGG 60.289 50.000 0.00 0.00 0.00 4.85
2199 2282 1.965643 TGACGTTGTACTAAGGCTGGT 59.034 47.619 0.00 0.00 0.00 4.00
2200 2283 2.029649 TGACGTTGTACTAAGGCTGGTC 60.030 50.000 0.00 0.00 0.00 4.02
2201 2284 1.965643 ACGTTGTACTAAGGCTGGTCA 59.034 47.619 0.00 0.00 0.00 4.02
2202 2285 2.565834 ACGTTGTACTAAGGCTGGTCAT 59.434 45.455 0.00 0.00 0.00 3.06
2203 2286 3.765511 ACGTTGTACTAAGGCTGGTCATA 59.234 43.478 0.00 0.00 0.00 2.15
2204 2287 4.142227 ACGTTGTACTAAGGCTGGTCATAG 60.142 45.833 0.00 0.00 0.00 2.23
2205 2288 4.142227 CGTTGTACTAAGGCTGGTCATAGT 60.142 45.833 1.78 1.78 33.45 2.12
2206 2289 5.109903 GTTGTACTAAGGCTGGTCATAGTG 58.890 45.833 6.16 0.00 31.46 2.74
2207 2290 3.704566 TGTACTAAGGCTGGTCATAGTGG 59.295 47.826 6.16 0.00 31.46 4.00
2208 2291 2.119495 ACTAAGGCTGGTCATAGTGGG 58.881 52.381 0.00 0.00 0.00 4.61
2209 2292 1.417890 CTAAGGCTGGTCATAGTGGGG 59.582 57.143 0.00 0.00 0.00 4.96
2210 2293 0.253160 AAGGCTGGTCATAGTGGGGA 60.253 55.000 0.00 0.00 0.00 4.81
2211 2294 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
2212 2295 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
2213 2296 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
2214 2297 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
2215 2298 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
2216 2299 3.104512 CTGGTCATAGTGGGGAGTAACA 58.895 50.000 0.00 0.00 0.00 2.41
2217 2300 3.711704 CTGGTCATAGTGGGGAGTAACAT 59.288 47.826 0.00 0.00 0.00 2.71
2218 2301 4.886163 TGGTCATAGTGGGGAGTAACATA 58.114 43.478 0.00 0.00 0.00 2.29
2219 2302 4.899457 TGGTCATAGTGGGGAGTAACATAG 59.101 45.833 0.00 0.00 0.00 2.23
2220 2303 5.145564 GGTCATAGTGGGGAGTAACATAGA 58.854 45.833 0.00 0.00 0.00 1.98
2221 2304 5.010820 GGTCATAGTGGGGAGTAACATAGAC 59.989 48.000 0.00 0.00 0.00 2.59
2222 2305 5.834204 GTCATAGTGGGGAGTAACATAGACT 59.166 44.000 0.00 0.00 0.00 3.24
2223 2306 7.002879 GTCATAGTGGGGAGTAACATAGACTA 58.997 42.308 0.00 0.00 0.00 2.59
2224 2307 7.175293 GTCATAGTGGGGAGTAACATAGACTAG 59.825 44.444 0.00 0.00 0.00 2.57
2225 2308 5.469210 AGTGGGGAGTAACATAGACTAGT 57.531 43.478 0.00 0.00 0.00 2.57
2226 2309 6.587560 AGTGGGGAGTAACATAGACTAGTA 57.412 41.667 0.00 0.00 0.00 1.82
2227 2310 6.978261 AGTGGGGAGTAACATAGACTAGTAA 58.022 40.000 0.00 0.00 0.00 2.24
2228 2311 6.832900 AGTGGGGAGTAACATAGACTAGTAAC 59.167 42.308 0.00 0.00 0.00 2.50
2229 2312 6.604795 GTGGGGAGTAACATAGACTAGTAACA 59.395 42.308 0.00 0.00 0.00 2.41
2230 2313 7.287235 GTGGGGAGTAACATAGACTAGTAACAT 59.713 40.741 0.00 0.00 0.00 2.71
2231 2314 8.505246 TGGGGAGTAACATAGACTAGTAACATA 58.495 37.037 0.00 0.00 0.00 2.29
2232 2315 9.531158 GGGGAGTAACATAGACTAGTAACATAT 57.469 37.037 0.00 0.00 0.00 1.78
2260 2343 8.522542 AGTCTAAGTTACTACCTTCATAGTGG 57.477 38.462 0.00 0.00 36.09 4.00
2261 2344 7.560626 AGTCTAAGTTACTACCTTCATAGTGGG 59.439 40.741 0.00 0.00 36.09 4.61
2262 2345 7.341512 GTCTAAGTTACTACCTTCATAGTGGGT 59.658 40.741 0.00 0.00 36.09 4.51
2263 2346 8.560039 TCTAAGTTACTACCTTCATAGTGGGTA 58.440 37.037 0.00 0.00 36.09 3.69
2268 2351 5.517322 CTACCTTCATAGTGGGTAGTGTC 57.483 47.826 9.46 0.00 44.30 3.67
2269 2352 3.786553 ACCTTCATAGTGGGTAGTGTCA 58.213 45.455 0.00 0.00 0.00 3.58
2270 2353 4.362677 ACCTTCATAGTGGGTAGTGTCAT 58.637 43.478 0.00 0.00 0.00 3.06
2271 2354 5.525484 ACCTTCATAGTGGGTAGTGTCATA 58.475 41.667 0.00 0.00 0.00 2.15
2272 2355 5.598830 ACCTTCATAGTGGGTAGTGTCATAG 59.401 44.000 0.00 0.00 0.00 2.23
2273 2356 5.011125 CCTTCATAGTGGGTAGTGTCATAGG 59.989 48.000 0.00 0.00 0.00 2.57
2274 2357 5.138758 TCATAGTGGGTAGTGTCATAGGT 57.861 43.478 0.00 0.00 0.00 3.08
2275 2358 4.893524 TCATAGTGGGTAGTGTCATAGGTG 59.106 45.833 0.00 0.00 0.00 4.00
2276 2359 3.185880 AGTGGGTAGTGTCATAGGTGT 57.814 47.619 0.00 0.00 0.00 4.16
2277 2360 2.832129 AGTGGGTAGTGTCATAGGTGTG 59.168 50.000 0.00 0.00 0.00 3.82
2278 2361 2.093658 GTGGGTAGTGTCATAGGTGTGG 60.094 54.545 0.00 0.00 0.00 4.17
2279 2362 2.185387 GGGTAGTGTCATAGGTGTGGT 58.815 52.381 0.00 0.00 0.00 4.16
2280 2363 3.245694 TGGGTAGTGTCATAGGTGTGGTA 60.246 47.826 0.00 0.00 0.00 3.25
2281 2364 3.770933 GGGTAGTGTCATAGGTGTGGTAA 59.229 47.826 0.00 0.00 0.00 2.85
2282 2365 4.382362 GGGTAGTGTCATAGGTGTGGTAAC 60.382 50.000 0.00 0.00 0.00 2.50
2301 2384 8.588290 TGGTAACATAGTTGCCTTCATTTATT 57.412 30.769 16.08 0.00 46.17 1.40
2302 2385 9.688091 TGGTAACATAGTTGCCTTCATTTATTA 57.312 29.630 16.08 0.00 46.17 0.98
2303 2386 9.946165 GGTAACATAGTTGCCTTCATTTATTAC 57.054 33.333 9.36 0.00 0.00 1.89
2311 2394 9.515226 AGTTGCCTTCATTTATTACTTTGTAGA 57.485 29.630 0.00 0.00 0.00 2.59
2327 2410 8.523915 ACTTTGTAGATTCATTATGCATTGGA 57.476 30.769 3.54 0.00 0.00 3.53
2328 2411 8.970020 ACTTTGTAGATTCATTATGCATTGGAA 58.030 29.630 3.54 7.17 0.00 3.53
2329 2412 9.806203 CTTTGTAGATTCATTATGCATTGGAAA 57.194 29.630 3.54 0.00 0.00 3.13
2330 2413 9.585099 TTTGTAGATTCATTATGCATTGGAAAC 57.415 29.630 3.54 5.74 0.00 2.78
2331 2414 7.715657 TGTAGATTCATTATGCATTGGAAACC 58.284 34.615 3.54 3.93 0.00 3.27
2332 2415 5.835257 AGATTCATTATGCATTGGAAACCG 58.165 37.500 3.54 0.00 0.00 4.44
2333 2416 3.435105 TCATTATGCATTGGAAACCGC 57.565 42.857 3.54 0.00 0.00 5.68
2334 2417 3.023119 TCATTATGCATTGGAAACCGCT 58.977 40.909 3.54 0.00 0.00 5.52
2335 2418 4.203226 TCATTATGCATTGGAAACCGCTA 58.797 39.130 3.54 0.00 0.00 4.26
2336 2419 4.826733 TCATTATGCATTGGAAACCGCTAT 59.173 37.500 3.54 0.00 0.00 2.97
2337 2420 4.566545 TTATGCATTGGAAACCGCTATG 57.433 40.909 3.54 0.00 0.00 2.23
2338 2421 1.832883 TGCATTGGAAACCGCTATGT 58.167 45.000 0.00 0.00 0.00 2.29
2339 2422 1.472082 TGCATTGGAAACCGCTATGTG 59.528 47.619 0.00 0.00 0.00 3.21
2340 2423 1.742831 GCATTGGAAACCGCTATGTGA 59.257 47.619 0.00 0.00 0.00 3.58
2341 2424 2.358898 GCATTGGAAACCGCTATGTGAT 59.641 45.455 0.00 0.00 0.00 3.06
2342 2425 3.793129 GCATTGGAAACCGCTATGTGATG 60.793 47.826 0.00 0.00 0.00 3.07
2343 2426 2.036958 TGGAAACCGCTATGTGATGG 57.963 50.000 0.00 0.00 0.00 3.51
2344 2427 1.280710 TGGAAACCGCTATGTGATGGT 59.719 47.619 0.00 0.00 35.90 3.55
2345 2428 2.502130 TGGAAACCGCTATGTGATGGTA 59.498 45.455 0.00 0.00 33.45 3.25
2346 2429 3.055021 TGGAAACCGCTATGTGATGGTAA 60.055 43.478 0.00 0.00 33.45 2.85
2347 2430 3.311596 GGAAACCGCTATGTGATGGTAAC 59.688 47.826 0.00 0.00 33.45 2.50
2371 2454 9.726438 AACATATTATGGTACTCTATTTGCCTC 57.274 33.333 8.48 0.00 33.60 4.70
2372 2455 9.105844 ACATATTATGGTACTCTATTTGCCTCT 57.894 33.333 8.48 0.00 33.60 3.69
2373 2456 9.593134 CATATTATGGTACTCTATTTGCCTCTC 57.407 37.037 0.00 0.00 0.00 3.20
2374 2457 7.863901 ATTATGGTACTCTATTTGCCTCTCT 57.136 36.000 0.00 0.00 0.00 3.10
2375 2458 5.799827 ATGGTACTCTATTTGCCTCTCTC 57.200 43.478 0.00 0.00 0.00 3.20
2376 2459 3.961408 TGGTACTCTATTTGCCTCTCTCC 59.039 47.826 0.00 0.00 0.00 3.71
2377 2460 4.219919 GGTACTCTATTTGCCTCTCTCCT 58.780 47.826 0.00 0.00 0.00 3.69
2378 2461 4.279922 GGTACTCTATTTGCCTCTCTCCTC 59.720 50.000 0.00 0.00 0.00 3.71
2379 2462 3.987745 ACTCTATTTGCCTCTCTCCTCA 58.012 45.455 0.00 0.00 0.00 3.86
2380 2463 4.555689 ACTCTATTTGCCTCTCTCCTCAT 58.444 43.478 0.00 0.00 0.00 2.90
2381 2464 4.968080 ACTCTATTTGCCTCTCTCCTCATT 59.032 41.667 0.00 0.00 0.00 2.57
2382 2465 6.139671 ACTCTATTTGCCTCTCTCCTCATTA 58.860 40.000 0.00 0.00 0.00 1.90
2383 2466 6.613271 ACTCTATTTGCCTCTCTCCTCATTAA 59.387 38.462 0.00 0.00 0.00 1.40
2384 2467 6.821388 TCTATTTGCCTCTCTCCTCATTAAC 58.179 40.000 0.00 0.00 0.00 2.01
2385 2468 5.707066 ATTTGCCTCTCTCCTCATTAACT 57.293 39.130 0.00 0.00 0.00 2.24
2386 2469 6.814954 ATTTGCCTCTCTCCTCATTAACTA 57.185 37.500 0.00 0.00 0.00 2.24
2387 2470 5.599999 TTGCCTCTCTCCTCATTAACTAC 57.400 43.478 0.00 0.00 0.00 2.73
2388 2471 4.873010 TGCCTCTCTCCTCATTAACTACT 58.127 43.478 0.00 0.00 0.00 2.57
2389 2472 5.273208 TGCCTCTCTCCTCATTAACTACTT 58.727 41.667 0.00 0.00 0.00 2.24
2390 2473 5.127845 TGCCTCTCTCCTCATTAACTACTTG 59.872 44.000 0.00 0.00 0.00 3.16
2391 2474 5.596845 CCTCTCTCCTCATTAACTACTTGC 58.403 45.833 0.00 0.00 0.00 4.01
2392 2475 5.452636 CCTCTCTCCTCATTAACTACTTGCC 60.453 48.000 0.00 0.00 0.00 4.52
2393 2476 5.023452 TCTCTCCTCATTAACTACTTGCCA 58.977 41.667 0.00 0.00 0.00 4.92
2394 2477 5.086104 TCTCCTCATTAACTACTTGCCAC 57.914 43.478 0.00 0.00 0.00 5.01
2395 2478 4.530553 TCTCCTCATTAACTACTTGCCACA 59.469 41.667 0.00 0.00 0.00 4.17
2396 2479 5.189736 TCTCCTCATTAACTACTTGCCACAT 59.810 40.000 0.00 0.00 0.00 3.21
2397 2480 5.815581 TCCTCATTAACTACTTGCCACATT 58.184 37.500 0.00 0.00 0.00 2.71
2398 2481 6.953101 TCCTCATTAACTACTTGCCACATTA 58.047 36.000 0.00 0.00 0.00 1.90
2399 2482 7.573710 TCCTCATTAACTACTTGCCACATTAT 58.426 34.615 0.00 0.00 0.00 1.28
2400 2483 7.715249 TCCTCATTAACTACTTGCCACATTATC 59.285 37.037 0.00 0.00 0.00 1.75
2401 2484 7.498900 CCTCATTAACTACTTGCCACATTATCA 59.501 37.037 0.00 0.00 0.00 2.15
2402 2485 8.978874 TCATTAACTACTTGCCACATTATCAT 57.021 30.769 0.00 0.00 0.00 2.45
2403 2486 9.407380 TCATTAACTACTTGCCACATTATCATT 57.593 29.630 0.00 0.00 0.00 2.57
2407 2490 8.761575 AACTACTTGCCACATTATCATTTTTG 57.238 30.769 0.00 0.00 0.00 2.44
2408 2491 6.813152 ACTACTTGCCACATTATCATTTTTGC 59.187 34.615 0.00 0.00 0.00 3.68
2409 2492 5.797051 ACTTGCCACATTATCATTTTTGCT 58.203 33.333 0.00 0.00 0.00 3.91
2410 2493 6.232692 ACTTGCCACATTATCATTTTTGCTT 58.767 32.000 0.00 0.00 0.00 3.91
2411 2494 7.385267 ACTTGCCACATTATCATTTTTGCTTA 58.615 30.769 0.00 0.00 0.00 3.09
2412 2495 8.042515 ACTTGCCACATTATCATTTTTGCTTAT 58.957 29.630 0.00 0.00 0.00 1.73
2413 2496 7.773864 TGCCACATTATCATTTTTGCTTATG 57.226 32.000 0.00 0.00 0.00 1.90
2414 2497 7.329499 TGCCACATTATCATTTTTGCTTATGT 58.671 30.769 0.00 0.00 0.00 2.29
2415 2498 7.278203 TGCCACATTATCATTTTTGCTTATGTG 59.722 33.333 0.00 0.00 40.58 3.21
2417 2500 7.623770 CACATTATCATTTTTGCTTATGTGGC 58.376 34.615 0.00 0.00 38.46 5.01
2418 2501 7.278203 CACATTATCATTTTTGCTTATGTGGCA 59.722 33.333 0.00 0.00 38.46 4.92
2419 2502 7.988599 ACATTATCATTTTTGCTTATGTGGCAT 59.011 29.630 0.00 0.00 39.54 4.40
2420 2503 8.492748 CATTATCATTTTTGCTTATGTGGCATC 58.507 33.333 0.00 0.00 39.54 3.91
2421 2504 5.664294 TCATTTTTGCTTATGTGGCATCT 57.336 34.783 0.00 0.00 39.54 2.90
2422 2505 6.772360 TCATTTTTGCTTATGTGGCATCTA 57.228 33.333 0.00 0.00 39.54 1.98
2423 2506 7.350744 TCATTTTTGCTTATGTGGCATCTAT 57.649 32.000 0.00 0.00 39.54 1.98
2424 2507 7.204604 TCATTTTTGCTTATGTGGCATCTATG 58.795 34.615 0.00 0.00 39.54 2.23
2425 2508 6.528537 TTTTTGCTTATGTGGCATCTATGT 57.471 33.333 0.00 0.00 39.54 2.29
2426 2509 6.528537 TTTTGCTTATGTGGCATCTATGTT 57.471 33.333 0.00 0.00 39.54 2.71
2427 2510 7.637631 TTTTGCTTATGTGGCATCTATGTTA 57.362 32.000 0.00 0.00 39.54 2.41
2428 2511 6.618287 TTGCTTATGTGGCATCTATGTTAC 57.382 37.500 0.00 0.00 39.54 2.50
2429 2512 5.928976 TGCTTATGTGGCATCTATGTTACT 58.071 37.500 0.00 0.00 34.56 2.24
2430 2513 7.061566 TGCTTATGTGGCATCTATGTTACTA 57.938 36.000 0.00 0.00 34.56 1.82
2431 2514 6.929049 TGCTTATGTGGCATCTATGTTACTAC 59.071 38.462 0.00 0.00 34.56 2.73
2432 2515 7.155328 GCTTATGTGGCATCTATGTTACTACT 58.845 38.462 0.00 0.00 0.00 2.57
2433 2516 7.657761 GCTTATGTGGCATCTATGTTACTACTT 59.342 37.037 0.00 0.00 0.00 2.24
2437 2520 8.018537 TGTGGCATCTATGTTACTACTTATGT 57.981 34.615 0.00 0.00 0.00 2.29
2438 2521 8.482943 TGTGGCATCTATGTTACTACTTATGTT 58.517 33.333 0.00 0.00 0.00 2.71
2439 2522 9.976511 GTGGCATCTATGTTACTACTTATGTTA 57.023 33.333 0.00 0.00 0.00 2.41
2440 2523 9.976511 TGGCATCTATGTTACTACTTATGTTAC 57.023 33.333 0.00 0.00 0.00 2.50
2445 2528 9.925545 TCTATGTTACTACTTATGTTACTCCCA 57.074 33.333 0.00 0.00 0.00 4.37
2446 2529 9.962783 CTATGTTACTACTTATGTTACTCCCAC 57.037 37.037 0.00 0.00 0.00 4.61
2447 2530 8.605325 ATGTTACTACTTATGTTACTCCCACT 57.395 34.615 0.00 0.00 0.00 4.00
2448 2531 9.705103 ATGTTACTACTTATGTTACTCCCACTA 57.295 33.333 0.00 0.00 0.00 2.74
2449 2532 9.705103 TGTTACTACTTATGTTACTCCCACTAT 57.295 33.333 0.00 0.00 0.00 2.12
2450 2533 9.962783 GTTACTACTTATGTTACTCCCACTATG 57.037 37.037 0.00 0.00 0.00 2.23
2451 2534 9.925545 TTACTACTTATGTTACTCCCACTATGA 57.074 33.333 0.00 0.00 0.00 2.15
2452 2535 8.235359 ACTACTTATGTTACTCCCACTATGAC 57.765 38.462 0.00 0.00 0.00 3.06
2453 2536 6.481434 ACTTATGTTACTCCCACTATGACC 57.519 41.667 0.00 0.00 0.00 4.02
2454 2537 5.962031 ACTTATGTTACTCCCACTATGACCA 59.038 40.000 0.00 0.00 0.00 4.02
2455 2538 6.098409 ACTTATGTTACTCCCACTATGACCAG 59.902 42.308 0.00 0.00 0.00 4.00
2456 2539 2.500098 TGTTACTCCCACTATGACCAGC 59.500 50.000 0.00 0.00 0.00 4.85
2476 2559 5.277345 CCAGCCTAATAGTTTTGATACGCAC 60.277 44.000 0.00 0.00 0.00 5.34
2498 2581 3.672867 CACGTACAAAACAATTCATGCCC 59.327 43.478 0.00 0.00 0.00 5.36
2500 2583 2.857186 ACAAAACAATTCATGCCCCC 57.143 45.000 0.00 0.00 0.00 5.40
2501 2584 2.053244 ACAAAACAATTCATGCCCCCA 58.947 42.857 0.00 0.00 0.00 4.96
2510 2593 2.435372 TCATGCCCCCATTGTCTTAC 57.565 50.000 0.00 0.00 0.00 2.34
2682 2774 6.593770 TCAAACAGTTCTCGCATGTATACAAT 59.406 34.615 10.14 0.00 0.00 2.71
2719 2811 8.865090 AGGATTCTGATTCTGTCGATTATACTT 58.135 33.333 0.00 0.00 0.00 2.24
2720 2812 9.134734 GGATTCTGATTCTGTCGATTATACTTC 57.865 37.037 0.00 0.00 0.00 3.01
2721 2813 9.134734 GATTCTGATTCTGTCGATTATACTTCC 57.865 37.037 0.00 0.00 0.00 3.46
2722 2814 7.825331 TCTGATTCTGTCGATTATACTTCCT 57.175 36.000 0.00 0.00 0.00 3.36
2723 2815 7.877003 TCTGATTCTGTCGATTATACTTCCTC 58.123 38.462 0.00 0.00 0.00 3.71
2724 2816 6.982852 TGATTCTGTCGATTATACTTCCTCC 58.017 40.000 0.00 0.00 0.00 4.30
2725 2817 6.549736 TGATTCTGTCGATTATACTTCCTCCA 59.450 38.462 0.00 0.00 0.00 3.86
2726 2818 6.978674 TTCTGTCGATTATACTTCCTCCAT 57.021 37.500 0.00 0.00 0.00 3.41
2727 2819 6.576662 TCTGTCGATTATACTTCCTCCATC 57.423 41.667 0.00 0.00 0.00 3.51
2728 2820 5.477291 TCTGTCGATTATACTTCCTCCATCC 59.523 44.000 0.00 0.00 0.00 3.51
2729 2821 4.217767 TGTCGATTATACTTCCTCCATCCG 59.782 45.833 0.00 0.00 0.00 4.18
2730 2822 4.458295 GTCGATTATACTTCCTCCATCCGA 59.542 45.833 0.00 0.00 0.00 4.55
2731 2823 5.048224 GTCGATTATACTTCCTCCATCCGAA 60.048 44.000 0.00 0.00 0.00 4.30
2732 2824 5.537295 TCGATTATACTTCCTCCATCCGAAA 59.463 40.000 0.00 0.00 0.00 3.46
2733 2825 6.041182 TCGATTATACTTCCTCCATCCGAAAA 59.959 38.462 0.00 0.00 0.00 2.29
2734 2826 6.874134 CGATTATACTTCCTCCATCCGAAAAT 59.126 38.462 0.00 0.00 0.00 1.82
2735 2827 8.033038 CGATTATACTTCCTCCATCCGAAAATA 58.967 37.037 0.00 0.00 0.00 1.40
2736 2828 9.152595 GATTATACTTCCTCCATCCGAAAATAC 57.847 37.037 0.00 0.00 0.00 1.89
2737 2829 6.749036 ATACTTCCTCCATCCGAAAATACT 57.251 37.500 0.00 0.00 0.00 2.12
2738 2830 5.437191 ACTTCCTCCATCCGAAAATACTT 57.563 39.130 0.00 0.00 0.00 2.24
2739 2831 5.186198 ACTTCCTCCATCCGAAAATACTTG 58.814 41.667 0.00 0.00 0.00 3.16
2740 2832 4.837093 TCCTCCATCCGAAAATACTTGT 57.163 40.909 0.00 0.00 0.00 3.16
2741 2833 4.766375 TCCTCCATCCGAAAATACTTGTC 58.234 43.478 0.00 0.00 0.00 3.18
2742 2834 4.224147 TCCTCCATCCGAAAATACTTGTCA 59.776 41.667 0.00 0.00 0.00 3.58
2743 2835 5.104527 TCCTCCATCCGAAAATACTTGTCAT 60.105 40.000 0.00 0.00 0.00 3.06
2744 2836 5.237344 CCTCCATCCGAAAATACTTGTCATC 59.763 44.000 0.00 0.00 0.00 2.92
2745 2837 5.739959 TCCATCCGAAAATACTTGTCATCA 58.260 37.500 0.00 0.00 0.00 3.07
2746 2838 6.176896 TCCATCCGAAAATACTTGTCATCAA 58.823 36.000 0.00 0.00 0.00 2.57
2747 2839 6.657117 TCCATCCGAAAATACTTGTCATCAAA 59.343 34.615 0.00 0.00 32.87 2.69
2748 2840 7.175816 TCCATCCGAAAATACTTGTCATCAAAA 59.824 33.333 0.00 0.00 32.87 2.44
2749 2841 7.975616 CCATCCGAAAATACTTGTCATCAAAAT 59.024 33.333 0.00 0.00 32.87 1.82
2750 2842 8.800972 CATCCGAAAATACTTGTCATCAAAATG 58.199 33.333 0.00 0.00 32.87 2.32
2751 2843 7.312154 TCCGAAAATACTTGTCATCAAAATGG 58.688 34.615 0.00 0.00 33.42 3.16
2752 2844 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
2753 2845 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
2761 2853 9.918630 ACTTGTCATCAAAATGGATAAAAGAAG 57.081 29.630 0.00 0.00 33.42 2.85
2769 2861 9.753674 TCAAAATGGATAAAAGAAGATGTACCT 57.246 29.630 0.00 0.00 0.00 3.08
2774 2866 8.712285 TGGATAAAAGAAGATGTACCTAAACG 57.288 34.615 0.00 0.00 0.00 3.60
2775 2867 8.316214 TGGATAAAAGAAGATGTACCTAAACGT 58.684 33.333 0.00 0.00 0.00 3.99
2776 2868 9.807649 GGATAAAAGAAGATGTACCTAAACGTA 57.192 33.333 0.00 0.00 0.00 3.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 70 2.355132 CGTATCTCCGCGGAATAGCTAT 59.645 50.000 30.53 16.71 34.40 2.97
69 71 1.736126 CGTATCTCCGCGGAATAGCTA 59.264 52.381 30.53 10.81 34.40 3.32
182 184 2.470801 GAAGTTCATTTGGCCGCGCA 62.471 55.000 8.75 0.00 0.00 6.09
192 194 5.179368 CGTGTACACATCTTGGAAGTTCATT 59.821 40.000 24.98 0.00 0.00 2.57
354 356 4.415150 TAGGCGACGTCCTCCGGT 62.415 66.667 10.58 0.00 42.24 5.28
481 483 2.678934 CTGCCCACCTGCTGCAAT 60.679 61.111 3.02 0.00 34.06 3.56
552 554 1.005394 ATCTTCGGCGGTGTCGTTT 60.005 52.632 7.21 0.00 38.89 3.60
553 555 1.736645 CATCTTCGGCGGTGTCGTT 60.737 57.895 7.21 0.00 38.89 3.85
567 569 6.405619 CGCTATCATCATCACCACTATCATCT 60.406 42.308 0.00 0.00 0.00 2.90
712 747 8.147058 TGTAGGCATTGAAAGCAGAAATTTTAA 58.853 29.630 0.00 0.00 0.00 1.52
749 787 4.072913 CGCACACGCTCGTTCTAT 57.927 55.556 0.00 0.00 35.30 1.98
777 831 1.081641 CGTCGTTCCAGCAGTACGT 60.082 57.895 0.00 0.00 36.70 3.57
780 835 2.126618 CGCGTCGTTCCAGCAGTA 60.127 61.111 0.00 0.00 0.00 2.74
793 850 2.832818 CTAAAATGCAGCACGCGCGT 62.833 55.000 32.73 32.73 46.97 6.01
800 857 2.484662 CCGCGCTAAAATGCAGCA 59.515 55.556 5.56 0.00 39.04 4.41
931 991 2.672996 CTTGGCTGGGTCGGGTTG 60.673 66.667 0.00 0.00 0.00 3.77
967 1027 3.502191 TTTGATCGGTTGCCTTTATGC 57.498 42.857 0.00 0.00 0.00 3.14
1406 1468 4.436998 CCCGTCGAGCCGCTCTTT 62.437 66.667 18.14 0.00 0.00 2.52
1540 1602 1.003355 TTGCTGCTTCCTTCCTCCG 60.003 57.895 0.00 0.00 0.00 4.63
1738 1806 2.403561 GGGGTAGAGAGAGAAGCCAAT 58.596 52.381 0.00 0.00 32.32 3.16
1770 1838 8.372521 GCAAATACTATTATGCACACAAAACAC 58.627 33.333 0.00 0.00 38.63 3.32
1792 1861 7.768807 AATAACACTACCAAGGTTATGCAAA 57.231 32.000 0.00 0.00 37.67 3.68
1882 1956 5.650703 TGATCTCTATTGTTGAGACGGTGTA 59.349 40.000 0.00 0.00 42.46 2.90
1888 1962 7.068103 TCCTTCTCTGATCTCTATTGTTGAGAC 59.932 40.741 0.00 0.00 42.46 3.36
1906 1980 8.667592 ACCTACAAAATAGTTAGTCCTTCTCT 57.332 34.615 0.00 0.00 0.00 3.10
1946 2023 4.188247 ACGCAGTTCTGACTTAAGCATA 57.812 40.909 1.29 0.00 37.78 3.14
1948 2025 2.526304 ACGCAGTTCTGACTTAAGCA 57.474 45.000 1.29 0.94 37.78 3.91
1962 2039 2.719046 GGAACGAACAAAATGAACGCAG 59.281 45.455 0.00 0.00 0.00 5.18
1963 2040 2.722071 GGAACGAACAAAATGAACGCA 58.278 42.857 0.00 0.00 0.00 5.24
1983 2064 7.745972 TGAGATTGAGAAAAACAAGATGATCG 58.254 34.615 0.00 0.00 0.00 3.69
1988 2069 9.956640 ATACTCTGAGATTGAGAAAAACAAGAT 57.043 29.630 12.44 0.00 35.66 2.40
1990 2071 8.997323 ACATACTCTGAGATTGAGAAAAACAAG 58.003 33.333 12.44 0.00 35.66 3.16
1998 2079 6.430864 AGAGGAACATACTCTGAGATTGAGA 58.569 40.000 12.44 0.00 43.35 3.27
1999 2080 6.713762 AGAGGAACATACTCTGAGATTGAG 57.286 41.667 12.44 0.00 43.35 3.02
2010 2091 7.482169 TGAACATGTAGAAGAGGAACATACT 57.518 36.000 0.00 0.00 32.70 2.12
2033 2114 8.843262 TCCTTTCAATATAGAAGCATCAACATG 58.157 33.333 0.00 0.00 0.00 3.21
2051 2132 9.757227 CCTAACAAACATACAAAATCCTTTCAA 57.243 29.630 0.00 0.00 0.00 2.69
2052 2133 9.137459 TCCTAACAAACATACAAAATCCTTTCA 57.863 29.630 0.00 0.00 0.00 2.69
2053 2134 9.626045 CTCCTAACAAACATACAAAATCCTTTC 57.374 33.333 0.00 0.00 0.00 2.62
2054 2135 9.143155 ACTCCTAACAAACATACAAAATCCTTT 57.857 29.630 0.00 0.00 0.00 3.11
2055 2136 8.706322 ACTCCTAACAAACATACAAAATCCTT 57.294 30.769 0.00 0.00 0.00 3.36
2071 2152 7.390440 CACATGAATTCACCTAAACTCCTAACA 59.610 37.037 11.07 0.00 0.00 2.41
2072 2153 7.148239 CCACATGAATTCACCTAAACTCCTAAC 60.148 40.741 11.07 0.00 0.00 2.34
2075 2156 5.222130 ACCACATGAATTCACCTAAACTCCT 60.222 40.000 11.07 0.00 0.00 3.69
2077 2158 5.473504 ACACCACATGAATTCACCTAAACTC 59.526 40.000 11.07 0.00 0.00 3.01
2121 2204 2.022240 TTTGCCCAAAAGGACACGCC 62.022 55.000 0.00 0.00 38.24 5.68
2189 2272 1.417890 CCCCACTATGACCAGCCTTAG 59.582 57.143 0.00 0.00 0.00 2.18
2190 2273 1.009060 TCCCCACTATGACCAGCCTTA 59.991 52.381 0.00 0.00 0.00 2.69
2191 2274 0.253160 TCCCCACTATGACCAGCCTT 60.253 55.000 0.00 0.00 0.00 4.35
2192 2275 0.692419 CTCCCCACTATGACCAGCCT 60.692 60.000 0.00 0.00 0.00 4.58
2193 2276 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
2194 2277 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
2195 2278 3.104512 TGTTACTCCCCACTATGACCAG 58.895 50.000 0.00 0.00 0.00 4.00
2196 2279 3.193395 TGTTACTCCCCACTATGACCA 57.807 47.619 0.00 0.00 0.00 4.02
2197 2280 5.010820 GTCTATGTTACTCCCCACTATGACC 59.989 48.000 0.00 0.00 0.00 4.02
2198 2281 5.834204 AGTCTATGTTACTCCCCACTATGAC 59.166 44.000 0.00 0.00 0.00 3.06
2199 2282 6.027025 AGTCTATGTTACTCCCCACTATGA 57.973 41.667 0.00 0.00 0.00 2.15
2200 2283 7.005296 ACTAGTCTATGTTACTCCCCACTATG 58.995 42.308 0.00 0.00 0.00 2.23
2201 2284 7.164233 ACTAGTCTATGTTACTCCCCACTAT 57.836 40.000 0.00 0.00 0.00 2.12
2202 2285 6.587560 ACTAGTCTATGTTACTCCCCACTA 57.412 41.667 0.00 0.00 0.00 2.74
2203 2286 5.469210 ACTAGTCTATGTTACTCCCCACT 57.531 43.478 0.00 0.00 0.00 4.00
2204 2287 6.604795 TGTTACTAGTCTATGTTACTCCCCAC 59.395 42.308 0.00 0.00 0.00 4.61
2205 2288 6.734532 TGTTACTAGTCTATGTTACTCCCCA 58.265 40.000 0.00 0.00 0.00 4.96
2206 2289 7.836479 ATGTTACTAGTCTATGTTACTCCCC 57.164 40.000 0.00 0.00 0.00 4.81
2234 2317 9.624373 CCACTATGAAGGTAGTAACTTAGACTA 57.376 37.037 0.00 0.00 33.29 2.59
2235 2318 7.560626 CCCACTATGAAGGTAGTAACTTAGACT 59.439 40.741 0.00 0.00 33.29 3.24
2236 2319 7.341512 ACCCACTATGAAGGTAGTAACTTAGAC 59.658 40.741 0.00 0.00 33.29 2.59
2237 2320 7.416731 ACCCACTATGAAGGTAGTAACTTAGA 58.583 38.462 0.00 0.00 33.29 2.10
2238 2321 7.657023 ACCCACTATGAAGGTAGTAACTTAG 57.343 40.000 0.00 0.00 33.29 2.18
2239 2322 8.757982 CTACCCACTATGAAGGTAGTAACTTA 57.242 38.462 0.00 0.00 45.39 2.24
2240 2323 7.657023 CTACCCACTATGAAGGTAGTAACTT 57.343 40.000 0.00 0.00 45.39 2.66
2247 2330 4.938028 TGACACTACCCACTATGAAGGTA 58.062 43.478 0.00 0.00 35.02 3.08
2248 2331 3.786553 TGACACTACCCACTATGAAGGT 58.213 45.455 0.00 0.00 37.69 3.50
2249 2332 5.011125 CCTATGACACTACCCACTATGAAGG 59.989 48.000 0.00 0.00 0.00 3.46
2250 2333 5.598830 ACCTATGACACTACCCACTATGAAG 59.401 44.000 0.00 0.00 0.00 3.02
2251 2334 5.362717 CACCTATGACACTACCCACTATGAA 59.637 44.000 0.00 0.00 0.00 2.57
2252 2335 4.893524 CACCTATGACACTACCCACTATGA 59.106 45.833 0.00 0.00 0.00 2.15
2253 2336 4.649674 ACACCTATGACACTACCCACTATG 59.350 45.833 0.00 0.00 0.00 2.23
2254 2337 4.649674 CACACCTATGACACTACCCACTAT 59.350 45.833 0.00 0.00 0.00 2.12
2255 2338 4.021229 CACACCTATGACACTACCCACTA 58.979 47.826 0.00 0.00 0.00 2.74
2256 2339 2.832129 CACACCTATGACACTACCCACT 59.168 50.000 0.00 0.00 0.00 4.00
2257 2340 2.093658 CCACACCTATGACACTACCCAC 60.094 54.545 0.00 0.00 0.00 4.61
2258 2341 2.184533 CCACACCTATGACACTACCCA 58.815 52.381 0.00 0.00 0.00 4.51
2259 2342 2.185387 ACCACACCTATGACACTACCC 58.815 52.381 0.00 0.00 0.00 3.69
2260 2343 4.221262 TGTTACCACACCTATGACACTACC 59.779 45.833 0.00 0.00 0.00 3.18
2261 2344 5.395682 TGTTACCACACCTATGACACTAC 57.604 43.478 0.00 0.00 0.00 2.73
2262 2345 6.893554 ACTATGTTACCACACCTATGACACTA 59.106 38.462 0.00 0.00 35.03 2.74
2263 2346 5.720041 ACTATGTTACCACACCTATGACACT 59.280 40.000 0.00 0.00 35.03 3.55
2264 2347 5.974108 ACTATGTTACCACACCTATGACAC 58.026 41.667 0.00 0.00 35.03 3.67
2265 2348 6.403049 CAACTATGTTACCACACCTATGACA 58.597 40.000 0.00 0.00 35.03 3.58
2266 2349 5.293569 GCAACTATGTTACCACACCTATGAC 59.706 44.000 0.00 0.00 35.03 3.06
2267 2350 5.424757 GCAACTATGTTACCACACCTATGA 58.575 41.667 0.00 0.00 35.03 2.15
2268 2351 4.574828 GGCAACTATGTTACCACACCTATG 59.425 45.833 0.00 0.00 35.03 2.23
2269 2352 4.777463 GGCAACTATGTTACCACACCTAT 58.223 43.478 0.00 0.00 35.03 2.57
2270 2353 4.210724 GGCAACTATGTTACCACACCTA 57.789 45.455 0.00 0.00 35.03 3.08
2271 2354 3.067684 GGCAACTATGTTACCACACCT 57.932 47.619 0.00 0.00 35.03 4.00
2301 2384 9.625747 TCCAATGCATAATGAATCTACAAAGTA 57.374 29.630 0.00 0.00 0.00 2.24
2302 2385 8.523915 TCCAATGCATAATGAATCTACAAAGT 57.476 30.769 0.00 0.00 0.00 2.66
2303 2386 9.806203 TTTCCAATGCATAATGAATCTACAAAG 57.194 29.630 0.00 0.00 0.00 2.77
2304 2387 9.585099 GTTTCCAATGCATAATGAATCTACAAA 57.415 29.630 0.00 0.00 0.00 2.83
2305 2388 8.196771 GGTTTCCAATGCATAATGAATCTACAA 58.803 33.333 0.00 0.00 0.00 2.41
2306 2389 7.468494 CGGTTTCCAATGCATAATGAATCTACA 60.468 37.037 0.00 0.00 0.00 2.74
2307 2390 6.857964 CGGTTTCCAATGCATAATGAATCTAC 59.142 38.462 0.00 0.00 0.00 2.59
2308 2391 6.514870 GCGGTTTCCAATGCATAATGAATCTA 60.515 38.462 0.00 0.00 0.00 1.98
2309 2392 5.737063 GCGGTTTCCAATGCATAATGAATCT 60.737 40.000 0.00 0.00 0.00 2.40
2310 2393 4.445385 GCGGTTTCCAATGCATAATGAATC 59.555 41.667 0.00 2.85 0.00 2.52
2311 2394 4.099881 AGCGGTTTCCAATGCATAATGAAT 59.900 37.500 0.00 0.00 0.00 2.57
2312 2395 3.446873 AGCGGTTTCCAATGCATAATGAA 59.553 39.130 0.00 0.13 0.00 2.57
2313 2396 3.023119 AGCGGTTTCCAATGCATAATGA 58.977 40.909 0.00 0.00 0.00 2.57
2314 2397 3.441496 AGCGGTTTCCAATGCATAATG 57.559 42.857 0.00 0.00 0.00 1.90
2315 2398 4.584325 ACATAGCGGTTTCCAATGCATAAT 59.416 37.500 0.00 0.00 0.00 1.28
2316 2399 3.951037 ACATAGCGGTTTCCAATGCATAA 59.049 39.130 0.00 0.00 0.00 1.90
2317 2400 3.314913 CACATAGCGGTTTCCAATGCATA 59.685 43.478 0.00 0.00 0.00 3.14
2318 2401 2.099592 CACATAGCGGTTTCCAATGCAT 59.900 45.455 0.00 0.00 0.00 3.96
2319 2402 1.472082 CACATAGCGGTTTCCAATGCA 59.528 47.619 0.00 0.00 0.00 3.96
2320 2403 1.742831 TCACATAGCGGTTTCCAATGC 59.257 47.619 0.00 0.00 0.00 3.56
2321 2404 3.243168 CCATCACATAGCGGTTTCCAATG 60.243 47.826 0.00 0.00 0.00 2.82
2322 2405 2.951642 CCATCACATAGCGGTTTCCAAT 59.048 45.455 0.00 0.00 0.00 3.16
2323 2406 2.290641 ACCATCACATAGCGGTTTCCAA 60.291 45.455 0.00 0.00 0.00 3.53
2324 2407 1.280710 ACCATCACATAGCGGTTTCCA 59.719 47.619 0.00 0.00 0.00 3.53
2325 2408 2.038387 ACCATCACATAGCGGTTTCC 57.962 50.000 0.00 0.00 0.00 3.13
2326 2409 3.936453 TGTTACCATCACATAGCGGTTTC 59.064 43.478 0.00 0.00 32.81 2.78
2327 2410 3.945346 TGTTACCATCACATAGCGGTTT 58.055 40.909 0.00 0.00 32.81 3.27
2328 2411 3.620427 TGTTACCATCACATAGCGGTT 57.380 42.857 0.00 0.00 32.81 4.44
2329 2412 3.838244 ATGTTACCATCACATAGCGGT 57.162 42.857 0.00 0.00 32.88 5.68
2330 2413 7.011389 CCATAATATGTTACCATCACATAGCGG 59.989 40.741 0.00 0.00 39.83 5.52
2331 2414 7.549134 ACCATAATATGTTACCATCACATAGCG 59.451 37.037 0.00 0.00 39.83 4.26
2332 2415 8.792830 ACCATAATATGTTACCATCACATAGC 57.207 34.615 0.00 0.00 39.83 2.97
2335 2418 9.944376 GAGTACCATAATATGTTACCATCACAT 57.056 33.333 4.63 0.00 38.45 3.21
2336 2419 9.154632 AGAGTACCATAATATGTTACCATCACA 57.845 33.333 4.63 0.00 29.41 3.58
2345 2428 9.726438 GAGGCAAATAGAGTACCATAATATGTT 57.274 33.333 0.00 0.00 0.00 2.71
2346 2429 9.105844 AGAGGCAAATAGAGTACCATAATATGT 57.894 33.333 0.00 0.00 0.00 2.29
2347 2430 9.593134 GAGAGGCAAATAGAGTACCATAATATG 57.407 37.037 0.00 0.00 0.00 1.78
2348 2431 9.554053 AGAGAGGCAAATAGAGTACCATAATAT 57.446 33.333 0.00 0.00 0.00 1.28
2349 2432 8.958060 AGAGAGGCAAATAGAGTACCATAATA 57.042 34.615 0.00 0.00 0.00 0.98
2350 2433 7.038658 GGAGAGAGGCAAATAGAGTACCATAAT 60.039 40.741 0.00 0.00 0.00 1.28
2351 2434 6.267928 GGAGAGAGGCAAATAGAGTACCATAA 59.732 42.308 0.00 0.00 0.00 1.90
2352 2435 5.775701 GGAGAGAGGCAAATAGAGTACCATA 59.224 44.000 0.00 0.00 0.00 2.74
2353 2436 4.591072 GGAGAGAGGCAAATAGAGTACCAT 59.409 45.833 0.00 0.00 0.00 3.55
2354 2437 3.961408 GGAGAGAGGCAAATAGAGTACCA 59.039 47.826 0.00 0.00 0.00 3.25
2355 2438 4.219919 AGGAGAGAGGCAAATAGAGTACC 58.780 47.826 0.00 0.00 0.00 3.34
2356 2439 4.890581 TGAGGAGAGAGGCAAATAGAGTAC 59.109 45.833 0.00 0.00 0.00 2.73
2357 2440 5.130705 TGAGGAGAGAGGCAAATAGAGTA 57.869 43.478 0.00 0.00 0.00 2.59
2358 2441 3.987745 TGAGGAGAGAGGCAAATAGAGT 58.012 45.455 0.00 0.00 0.00 3.24
2359 2442 5.549742 AATGAGGAGAGAGGCAAATAGAG 57.450 43.478 0.00 0.00 0.00 2.43
2360 2443 6.613271 AGTTAATGAGGAGAGAGGCAAATAGA 59.387 38.462 0.00 0.00 0.00 1.98
2361 2444 6.825610 AGTTAATGAGGAGAGAGGCAAATAG 58.174 40.000 0.00 0.00 0.00 1.73
2362 2445 6.814954 AGTTAATGAGGAGAGAGGCAAATA 57.185 37.500 0.00 0.00 0.00 1.40
2363 2446 5.707066 AGTTAATGAGGAGAGAGGCAAAT 57.293 39.130 0.00 0.00 0.00 2.32
2364 2447 5.721960 AGTAGTTAATGAGGAGAGAGGCAAA 59.278 40.000 0.00 0.00 0.00 3.68
2365 2448 5.273208 AGTAGTTAATGAGGAGAGAGGCAA 58.727 41.667 0.00 0.00 0.00 4.52
2366 2449 4.873010 AGTAGTTAATGAGGAGAGAGGCA 58.127 43.478 0.00 0.00 0.00 4.75
2367 2450 5.596845 CAAGTAGTTAATGAGGAGAGAGGC 58.403 45.833 0.00 0.00 0.00 4.70
2368 2451 5.452636 GGCAAGTAGTTAATGAGGAGAGAGG 60.453 48.000 0.00 0.00 0.00 3.69
2369 2452 5.127845 TGGCAAGTAGTTAATGAGGAGAGAG 59.872 44.000 0.00 0.00 0.00 3.20
2370 2453 5.023452 TGGCAAGTAGTTAATGAGGAGAGA 58.977 41.667 0.00 0.00 0.00 3.10
2371 2454 5.112686 GTGGCAAGTAGTTAATGAGGAGAG 58.887 45.833 0.00 0.00 0.00 3.20
2372 2455 4.530553 TGTGGCAAGTAGTTAATGAGGAGA 59.469 41.667 0.00 0.00 0.00 3.71
2373 2456 4.832248 TGTGGCAAGTAGTTAATGAGGAG 58.168 43.478 0.00 0.00 0.00 3.69
2374 2457 4.901197 TGTGGCAAGTAGTTAATGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
2375 2458 7.498900 TGATAATGTGGCAAGTAGTTAATGAGG 59.501 37.037 0.00 0.00 0.00 3.86
2376 2459 8.437360 TGATAATGTGGCAAGTAGTTAATGAG 57.563 34.615 0.00 0.00 0.00 2.90
2377 2460 8.978874 ATGATAATGTGGCAAGTAGTTAATGA 57.021 30.769 0.00 0.00 0.00 2.57
2381 2464 9.853555 CAAAAATGATAATGTGGCAAGTAGTTA 57.146 29.630 0.00 0.00 0.00 2.24
2382 2465 7.331687 GCAAAAATGATAATGTGGCAAGTAGTT 59.668 33.333 0.00 0.00 0.00 2.24
2383 2466 6.813152 GCAAAAATGATAATGTGGCAAGTAGT 59.187 34.615 0.00 0.00 0.00 2.73
2384 2467 7.037438 AGCAAAAATGATAATGTGGCAAGTAG 58.963 34.615 0.00 0.00 0.00 2.57
2385 2468 6.934056 AGCAAAAATGATAATGTGGCAAGTA 58.066 32.000 0.00 0.00 0.00 2.24
2386 2469 5.797051 AGCAAAAATGATAATGTGGCAAGT 58.203 33.333 0.00 0.00 0.00 3.16
2387 2470 6.730960 AAGCAAAAATGATAATGTGGCAAG 57.269 33.333 0.00 0.00 0.00 4.01
2388 2471 7.823310 ACATAAGCAAAAATGATAATGTGGCAA 59.177 29.630 0.00 0.00 0.00 4.52
2389 2472 7.278203 CACATAAGCAAAAATGATAATGTGGCA 59.722 33.333 0.00 0.00 33.99 4.92
2390 2473 7.254522 CCACATAAGCAAAAATGATAATGTGGC 60.255 37.037 15.77 0.00 45.48 5.01
2391 2474 8.133754 CCACATAAGCAAAAATGATAATGTGG 57.866 34.615 14.63 14.63 45.85 4.17
2392 2475 7.278203 TGCCACATAAGCAAAAATGATAATGTG 59.722 33.333 0.00 0.00 37.28 3.21
2393 2476 7.329499 TGCCACATAAGCAAAAATGATAATGT 58.671 30.769 0.00 0.00 37.28 2.71
2394 2477 7.773864 TGCCACATAAGCAAAAATGATAATG 57.226 32.000 0.00 0.00 37.28 1.90
2395 2478 8.426489 AGATGCCACATAAGCAAAAATGATAAT 58.574 29.630 0.00 0.00 44.83 1.28
2396 2479 7.784037 AGATGCCACATAAGCAAAAATGATAA 58.216 30.769 0.00 0.00 44.83 1.75
2397 2480 7.350744 AGATGCCACATAAGCAAAAATGATA 57.649 32.000 0.00 0.00 44.83 2.15
2398 2481 6.229936 AGATGCCACATAAGCAAAAATGAT 57.770 33.333 0.00 0.00 44.83 2.45
2399 2482 5.664294 AGATGCCACATAAGCAAAAATGA 57.336 34.783 0.00 0.00 44.83 2.57
2400 2483 6.982141 ACATAGATGCCACATAAGCAAAAATG 59.018 34.615 0.00 0.00 44.83 2.32
2401 2484 7.116075 ACATAGATGCCACATAAGCAAAAAT 57.884 32.000 0.00 0.00 44.83 1.82
2402 2485 6.528537 ACATAGATGCCACATAAGCAAAAA 57.471 33.333 0.00 0.00 44.83 1.94
2403 2486 6.528537 AACATAGATGCCACATAAGCAAAA 57.471 33.333 0.00 0.00 44.83 2.44
2404 2487 6.828273 AGTAACATAGATGCCACATAAGCAAA 59.172 34.615 0.00 0.00 44.83 3.68
2405 2488 6.356556 AGTAACATAGATGCCACATAAGCAA 58.643 36.000 0.00 0.00 44.83 3.91
2406 2489 5.928976 AGTAACATAGATGCCACATAAGCA 58.071 37.500 0.00 0.00 45.94 3.91
2407 2490 7.155328 AGTAGTAACATAGATGCCACATAAGC 58.845 38.462 0.00 0.00 0.00 3.09
2411 2494 8.651389 ACATAAGTAGTAACATAGATGCCACAT 58.349 33.333 0.00 0.00 0.00 3.21
2412 2495 8.018537 ACATAAGTAGTAACATAGATGCCACA 57.981 34.615 0.00 0.00 0.00 4.17
2413 2496 8.888579 AACATAAGTAGTAACATAGATGCCAC 57.111 34.615 0.00 0.00 0.00 5.01
2414 2497 9.976511 GTAACATAAGTAGTAACATAGATGCCA 57.023 33.333 0.00 0.00 0.00 4.92
2419 2502 9.925545 TGGGAGTAACATAAGTAGTAACATAGA 57.074 33.333 0.00 0.00 0.00 1.98
2420 2503 9.962783 GTGGGAGTAACATAAGTAGTAACATAG 57.037 37.037 0.00 0.00 0.00 2.23
2421 2504 9.705103 AGTGGGAGTAACATAAGTAGTAACATA 57.295 33.333 0.00 0.00 0.00 2.29
2422 2505 8.605325 AGTGGGAGTAACATAAGTAGTAACAT 57.395 34.615 0.00 0.00 0.00 2.71
2423 2506 9.705103 ATAGTGGGAGTAACATAAGTAGTAACA 57.295 33.333 0.00 0.00 0.00 2.41
2424 2507 9.962783 CATAGTGGGAGTAACATAAGTAGTAAC 57.037 37.037 0.00 0.00 0.00 2.50
2425 2508 9.925545 TCATAGTGGGAGTAACATAAGTAGTAA 57.074 33.333 0.00 0.00 0.00 2.24
2426 2509 9.347240 GTCATAGTGGGAGTAACATAAGTAGTA 57.653 37.037 0.00 0.00 0.00 1.82
2427 2510 7.287235 GGTCATAGTGGGAGTAACATAAGTAGT 59.713 40.741 0.00 0.00 0.00 2.73
2428 2511 7.287005 TGGTCATAGTGGGAGTAACATAAGTAG 59.713 40.741 0.00 0.00 0.00 2.57
2429 2512 7.127405 TGGTCATAGTGGGAGTAACATAAGTA 58.873 38.462 0.00 0.00 0.00 2.24
2430 2513 5.962031 TGGTCATAGTGGGAGTAACATAAGT 59.038 40.000 0.00 0.00 0.00 2.24
2431 2514 6.479972 TGGTCATAGTGGGAGTAACATAAG 57.520 41.667 0.00 0.00 0.00 1.73
2432 2515 5.163343 GCTGGTCATAGTGGGAGTAACATAA 60.163 44.000 0.00 0.00 0.00 1.90
2433 2516 4.344102 GCTGGTCATAGTGGGAGTAACATA 59.656 45.833 0.00 0.00 0.00 2.29
2434 2517 3.134804 GCTGGTCATAGTGGGAGTAACAT 59.865 47.826 0.00 0.00 0.00 2.71
2435 2518 2.500098 GCTGGTCATAGTGGGAGTAACA 59.500 50.000 0.00 0.00 0.00 2.41
2436 2519 2.158943 GGCTGGTCATAGTGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
2437 2520 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
2438 2521 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
2439 2522 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
2440 2523 2.088104 TAGGCTGGTCATAGTGGGAG 57.912 55.000 0.00 0.00 0.00 4.30
2441 2524 2.561209 TTAGGCTGGTCATAGTGGGA 57.439 50.000 0.00 0.00 0.00 4.37
2442 2525 3.904339 ACTATTAGGCTGGTCATAGTGGG 59.096 47.826 0.00 0.00 32.35 4.61
2443 2526 5.552870 AACTATTAGGCTGGTCATAGTGG 57.447 43.478 0.00 0.00 33.59 4.00
2444 2527 7.047891 TCAAAACTATTAGGCTGGTCATAGTG 58.952 38.462 0.00 0.00 33.59 2.74
2445 2528 7.195374 TCAAAACTATTAGGCTGGTCATAGT 57.805 36.000 0.00 1.13 34.54 2.12
2446 2529 9.209175 GTATCAAAACTATTAGGCTGGTCATAG 57.791 37.037 0.00 0.49 0.00 2.23
2447 2530 7.870954 CGTATCAAAACTATTAGGCTGGTCATA 59.129 37.037 0.00 0.00 0.00 2.15
2448 2531 6.706270 CGTATCAAAACTATTAGGCTGGTCAT 59.294 38.462 0.00 0.00 0.00 3.06
2449 2532 6.046593 CGTATCAAAACTATTAGGCTGGTCA 58.953 40.000 0.00 0.00 0.00 4.02
2450 2533 5.050295 GCGTATCAAAACTATTAGGCTGGTC 60.050 44.000 0.00 0.00 0.00 4.02
2451 2534 4.814771 GCGTATCAAAACTATTAGGCTGGT 59.185 41.667 0.00 0.00 0.00 4.00
2452 2535 4.814234 TGCGTATCAAAACTATTAGGCTGG 59.186 41.667 0.00 0.00 0.00 4.85
2453 2536 5.293324 TGTGCGTATCAAAACTATTAGGCTG 59.707 40.000 0.00 0.00 0.00 4.85
2454 2537 5.293569 GTGTGCGTATCAAAACTATTAGGCT 59.706 40.000 0.00 0.00 0.00 4.58
2455 2538 5.499047 GTGTGCGTATCAAAACTATTAGGC 58.501 41.667 0.00 0.00 0.00 3.93
2456 2539 5.724239 CGTGTGCGTATCAAAACTATTAGG 58.276 41.667 0.00 0.00 0.00 2.69
2476 2559 3.672867 GGGCATGAATTGTTTTGTACGTG 59.327 43.478 0.00 0.00 0.00 4.49
2498 2581 2.092914 GGAGGACCAGTAAGACAATGGG 60.093 54.545 0.00 0.00 38.48 4.00
2500 2583 3.981071 TGGAGGACCAGTAAGACAATG 57.019 47.619 0.00 0.00 41.77 2.82
2646 2734 3.945179 GAACTGTTTGACTGTTCTGCAG 58.055 45.455 7.63 7.63 46.69 4.41
2682 2774 6.037500 CAGAATCAGAATCCTCGTTTGCAATA 59.962 38.462 0.00 0.00 0.00 1.90
2719 2811 4.224147 TGACAAGTATTTTCGGATGGAGGA 59.776 41.667 0.00 0.00 0.00 3.71
2720 2812 4.513442 TGACAAGTATTTTCGGATGGAGG 58.487 43.478 0.00 0.00 0.00 4.30
2721 2813 5.817296 TGATGACAAGTATTTTCGGATGGAG 59.183 40.000 0.00 0.00 0.00 3.86
2722 2814 5.739959 TGATGACAAGTATTTTCGGATGGA 58.260 37.500 0.00 0.00 0.00 3.41
2723 2815 6.435430 TTGATGACAAGTATTTTCGGATGG 57.565 37.500 0.00 0.00 0.00 3.51
2724 2816 8.800972 CATTTTGATGACAAGTATTTTCGGATG 58.199 33.333 0.00 0.00 37.32 3.51
2725 2817 7.975616 CCATTTTGATGACAAGTATTTTCGGAT 59.024 33.333 0.00 0.00 37.32 4.18
2726 2818 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
2727 2819 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
2728 2820 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
2735 2827 9.918630 CTTCTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
2743 2835 9.753674 AGGTACATCTTCTTTTATCCATTTTGA 57.246 29.630 0.00 0.00 0.00 2.69
2748 2840 9.326413 CGTTTAGGTACATCTTCTTTTATCCAT 57.674 33.333 0.00 0.00 0.00 3.41
2749 2841 8.316214 ACGTTTAGGTACATCTTCTTTTATCCA 58.684 33.333 0.00 0.00 0.00 3.41
2750 2842 8.713737 ACGTTTAGGTACATCTTCTTTTATCC 57.286 34.615 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.