Multiple sequence alignment - TraesCS3B01G268000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G268000 chr3B 100.000 3197 0 0 1 3197 431212714 431209518 0.000000e+00 5904.0
1 TraesCS3B01G268000 chr3D 94.746 2931 106 24 291 3197 332165273 332162367 0.000000e+00 4516.0
2 TraesCS3B01G268000 chr3D 93.662 142 7 1 1 142 332233411 332233272 8.990000e-51 211.0
3 TraesCS3B01G268000 chr3D 87.770 139 6 2 1 139 332165401 332165274 5.520000e-33 152.0
4 TraesCS3B01G268000 chr3A 96.065 2541 92 5 575 3111 449124237 449121701 0.000000e+00 4132.0
5 TraesCS3B01G268000 chr3A 91.603 131 9 1 1 131 449506317 449506189 2.530000e-41 180.0
6 TraesCS3B01G268000 chr5A 97.452 157 2 1 3041 3197 37109847 37110001 1.890000e-67 267.0
7 TraesCS3B01G268000 chr5A 96.815 157 1 1 3041 3197 298336833 298336985 3.160000e-65 259.0
8 TraesCS3B01G268000 chr5A 95.541 157 4 1 3041 3197 546857717 546857564 6.850000e-62 248.0
9 TraesCS3B01G268000 chr5A 91.429 140 10 1 140 277 93107469 93107330 1.170000e-44 191.0
10 TraesCS3B01G268000 chr5A 91.971 137 9 1 140 274 361467642 361467778 1.170000e-44 191.0
11 TraesCS3B01G268000 chr5A 75.393 191 28 11 141 317 320214244 320214429 1.230000e-09 75.0
12 TraesCS3B01G268000 chr2A 97.452 157 2 1 3041 3197 607534896 607534742 1.890000e-67 267.0
13 TraesCS3B01G268000 chr4A 97.452 157 1 1 3041 3197 559212269 559212116 6.800000e-67 265.0
14 TraesCS3B01G268000 chr4A 97.222 36 1 0 263 298 551333853 551333888 9.580000e-06 62.1
15 TraesCS3B01G268000 chr6A 95.541 157 4 1 3041 3197 419205290 419205137 6.850000e-62 248.0
16 TraesCS3B01G268000 chr6A 91.971 137 9 1 140 274 68715821 68715957 1.170000e-44 191.0
17 TraesCS3B01G268000 chr6A 91.971 137 9 1 140 274 143591023 143591159 1.170000e-44 191.0
18 TraesCS3B01G268000 chr6A 91.429 140 10 1 140 277 157718301 157718162 1.170000e-44 191.0
19 TraesCS3B01G268000 chr6B 94.268 157 6 1 3041 3197 92069084 92069237 1.480000e-58 237.0
20 TraesCS3B01G268000 chr6B 89.130 138 12 3 300 436 17414095 17414230 5.480000e-38 169.0
21 TraesCS3B01G268000 chr6B 85.333 150 21 1 299 448 485772389 485772241 1.540000e-33 154.0
22 TraesCS3B01G268000 chr7B 90.385 156 12 1 140 292 85624485 85624330 5.410000e-48 202.0
23 TraesCS3B01G268000 chr7B 86.928 153 20 0 299 451 196913458 196913306 4.240000e-39 172.0
24 TraesCS3B01G268000 chr7B 97.143 35 1 0 263 297 714002364 714002398 3.440000e-05 60.2
25 TraesCS3B01G268000 chr5D 89.571 163 10 3 141 296 66666590 66666428 1.940000e-47 200.0
26 TraesCS3B01G268000 chr5D 100.000 30 0 0 263 292 549802918 549802947 4.460000e-04 56.5
27 TraesCS3B01G268000 chr7D 90.066 151 13 1 299 449 386838949 386838801 9.050000e-46 195.0
28 TraesCS3B01G268000 chr4D 89.542 153 16 0 299 451 451835171 451835019 9.050000e-46 195.0
29 TraesCS3B01G268000 chr7A 91.971 137 9 1 140 274 387816386 387816522 1.170000e-44 191.0
30 TraesCS3B01G268000 chr1A 91.971 137 9 1 140 274 54538621 54538757 1.170000e-44 191.0
31 TraesCS3B01G268000 chr1A 80.189 106 10 5 214 309 203837168 203837272 5.720000e-08 69.4
32 TraesCS3B01G268000 chr2D 89.333 150 16 0 299 448 461085685 461085834 4.210000e-44 189.0
33 TraesCS3B01G268000 chr2D 95.122 41 2 0 263 303 59013940 59013900 7.400000e-07 65.8
34 TraesCS3B01G268000 chrUn 88.732 142 16 0 299 440 96355642 96355783 1.180000e-39 174.0
35 TraesCS3B01G268000 chr5B 100.000 62 0 0 3041 3102 535528289 535528228 7.250000e-22 115.0
36 TraesCS3B01G268000 chr5B 92.500 80 2 2 3118 3197 535528238 535528163 9.370000e-21 111.0
37 TraesCS3B01G268000 chr2B 86.207 58 8 0 140 197 373508692 373508749 2.660000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G268000 chr3B 431209518 431212714 3196 True 5904 5904 100.000 1 3197 1 chr3B.!!$R1 3196
1 TraesCS3B01G268000 chr3D 332162367 332165401 3034 True 2334 4516 91.258 1 3197 2 chr3D.!!$R2 3196
2 TraesCS3B01G268000 chr3A 449121701 449124237 2536 True 4132 4132 96.065 575 3111 1 chr3A.!!$R1 2536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
433 434 0.238817 CTAGCTATCTGTCCGCGGAC 59.761 60.0 43.88 43.88 44.77 4.79 F
551 552 0.255890 GAGAATTGCCTGGGCCTGTA 59.744 55.0 4.53 0.00 41.09 2.74 F
592 593 0.322816 TACCGAGCGACCCACTAGTT 60.323 55.0 0.00 0.00 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1695 1704 0.105039 GGGACATAACCAGAGAGGCG 59.895 60.0 0.00 0.00 43.14 5.52 R
1803 1812 0.106918 TTAGCAATTTCCCGCGGGAT 60.107 50.0 45.44 31.63 44.74 3.85 R
2522 2532 0.622136 TCATCTGGGAACTGCATGCT 59.378 50.0 20.33 0.00 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.660208 AGTGGAGTAATACGTGTCTTTCATTTT 59.340 33.333 0.00 0.00 0.00 1.82
81 82 9.676861 AATATAAAATAGGGATTACCGCTAACC 57.323 33.333 0.00 0.00 46.96 2.85
91 92 2.189594 ACCGCTAACCCCAAAACTAC 57.810 50.000 0.00 0.00 0.00 2.73
95 96 2.289819 CGCTAACCCCAAAACTACCAGA 60.290 50.000 0.00 0.00 0.00 3.86
96 97 3.344515 GCTAACCCCAAAACTACCAGAG 58.655 50.000 0.00 0.00 0.00 3.35
97 98 3.008704 GCTAACCCCAAAACTACCAGAGA 59.991 47.826 0.00 0.00 0.00 3.10
98 99 3.790089 AACCCCAAAACTACCAGAGAG 57.210 47.619 0.00 0.00 0.00 3.20
99 100 2.702748 ACCCCAAAACTACCAGAGAGT 58.297 47.619 0.00 0.00 0.00 3.24
100 101 3.865571 ACCCCAAAACTACCAGAGAGTA 58.134 45.455 0.00 0.00 0.00 2.59
101 102 3.838903 ACCCCAAAACTACCAGAGAGTAG 59.161 47.826 0.00 0.00 44.43 2.57
102 103 3.197983 CCCCAAAACTACCAGAGAGTAGG 59.802 52.174 3.95 0.00 43.39 3.18
103 104 4.094476 CCCAAAACTACCAGAGAGTAGGA 58.906 47.826 3.95 0.00 43.39 2.94
114 115 3.572255 CAGAGAGTAGGAAGGCATCTACC 59.428 52.174 7.84 0.00 37.22 3.18
135 136 8.439971 TCTACCATGGCTAATTCTTAACATGAT 58.560 33.333 13.04 0.00 38.29 2.45
139 140 8.027189 CCATGGCTAATTCTTAACATGATCATG 58.973 37.037 29.95 29.95 44.15 3.07
150 151 3.309961 CATGATCATGTACTCCCTCCG 57.690 52.381 24.87 0.00 34.23 4.63
151 152 2.454336 TGATCATGTACTCCCTCCGT 57.546 50.000 0.00 0.00 0.00 4.69
152 153 2.747177 TGATCATGTACTCCCTCCGTT 58.253 47.619 0.00 0.00 0.00 4.44
153 154 2.693591 TGATCATGTACTCCCTCCGTTC 59.306 50.000 0.00 0.00 0.00 3.95
154 155 2.225382 TCATGTACTCCCTCCGTTCA 57.775 50.000 0.00 0.00 0.00 3.18
155 156 2.747177 TCATGTACTCCCTCCGTTCAT 58.253 47.619 0.00 0.00 0.00 2.57
156 157 3.905968 TCATGTACTCCCTCCGTTCATA 58.094 45.455 0.00 0.00 0.00 2.15
157 158 4.283337 TCATGTACTCCCTCCGTTCATAA 58.717 43.478 0.00 0.00 0.00 1.90
158 159 4.712829 TCATGTACTCCCTCCGTTCATAAA 59.287 41.667 0.00 0.00 0.00 1.40
159 160 5.365605 TCATGTACTCCCTCCGTTCATAAAT 59.634 40.000 0.00 0.00 0.00 1.40
160 161 6.551975 TCATGTACTCCCTCCGTTCATAAATA 59.448 38.462 0.00 0.00 0.00 1.40
161 162 6.989155 TGTACTCCCTCCGTTCATAAATAT 57.011 37.500 0.00 0.00 0.00 1.28
162 163 8.528643 CATGTACTCCCTCCGTTCATAAATATA 58.471 37.037 0.00 0.00 0.00 0.86
163 164 8.481492 TGTACTCCCTCCGTTCATAAATATAA 57.519 34.615 0.00 0.00 0.00 0.98
164 165 8.582437 TGTACTCCCTCCGTTCATAAATATAAG 58.418 37.037 0.00 0.00 0.00 1.73
165 166 7.613551 ACTCCCTCCGTTCATAAATATAAGT 57.386 36.000 0.00 0.00 0.00 2.24
166 167 7.668492 ACTCCCTCCGTTCATAAATATAAGTC 58.332 38.462 0.00 0.00 0.00 3.01
167 168 7.509659 ACTCCCTCCGTTCATAAATATAAGTCT 59.490 37.037 0.00 0.00 0.00 3.24
168 169 8.258850 TCCCTCCGTTCATAAATATAAGTCTT 57.741 34.615 0.00 0.00 0.00 3.01
169 170 8.711170 TCCCTCCGTTCATAAATATAAGTCTTT 58.289 33.333 0.00 0.00 0.00 2.52
170 171 9.991906 CCCTCCGTTCATAAATATAAGTCTTTA 57.008 33.333 0.00 0.00 0.00 1.85
196 197 9.988815 ATAGAGATTTCACTATGAACCACATAC 57.011 33.333 0.00 0.00 35.89 2.39
197 198 7.851228 AGAGATTTCACTATGAACCACATACA 58.149 34.615 0.00 0.00 35.89 2.29
198 199 7.984050 AGAGATTTCACTATGAACCACATACAG 59.016 37.037 0.00 0.00 35.89 2.74
199 200 7.851228 AGATTTCACTATGAACCACATACAGA 58.149 34.615 0.00 0.00 35.89 3.41
200 201 8.489489 AGATTTCACTATGAACCACATACAGAT 58.511 33.333 0.00 0.00 35.89 2.90
201 202 7.848223 TTTCACTATGAACCACATACAGATG 57.152 36.000 0.00 0.00 35.89 2.90
202 203 6.946340 TTCACTATGAACCACATACAGATGT 58.054 36.000 0.00 0.00 37.89 3.06
203 204 7.654022 TCACTATGAACCACATACAGATGTA 57.346 36.000 0.00 0.00 44.82 2.29
204 205 8.250143 TCACTATGAACCACATACAGATGTAT 57.750 34.615 0.00 0.00 44.82 2.29
205 206 9.362151 TCACTATGAACCACATACAGATGTATA 57.638 33.333 5.21 0.00 44.82 1.47
212 213 9.307121 GAACCACATACAGATGTATATAGATGC 57.693 37.037 5.21 0.00 44.82 3.91
213 214 8.366359 ACCACATACAGATGTATATAGATGCA 57.634 34.615 5.21 0.00 44.82 3.96
214 215 8.985922 ACCACATACAGATGTATATAGATGCAT 58.014 33.333 0.00 0.00 44.82 3.96
215 216 9.828039 CCACATACAGATGTATATAGATGCATT 57.172 33.333 0.00 0.00 44.82 3.56
243 244 7.093322 AGTGTAGATTCATTCATTTTGCTCC 57.907 36.000 0.00 0.00 0.00 4.70
244 245 6.660521 AGTGTAGATTCATTCATTTTGCTCCA 59.339 34.615 0.00 0.00 0.00 3.86
245 246 7.341256 AGTGTAGATTCATTCATTTTGCTCCAT 59.659 33.333 0.00 0.00 0.00 3.41
246 247 7.646922 GTGTAGATTCATTCATTTTGCTCCATC 59.353 37.037 0.00 0.00 0.00 3.51
247 248 7.558807 TGTAGATTCATTCATTTTGCTCCATCT 59.441 33.333 0.00 0.00 0.00 2.90
248 249 9.060347 GTAGATTCATTCATTTTGCTCCATCTA 57.940 33.333 0.00 0.00 0.00 1.98
249 250 8.167605 AGATTCATTCATTTTGCTCCATCTAG 57.832 34.615 0.00 0.00 0.00 2.43
250 251 7.778853 AGATTCATTCATTTTGCTCCATCTAGT 59.221 33.333 0.00 0.00 0.00 2.57
251 252 6.688637 TCATTCATTTTGCTCCATCTAGTG 57.311 37.500 0.00 0.00 0.00 2.74
263 264 3.565764 CATCTAGTGGAATCCCTGCAA 57.434 47.619 0.00 0.00 0.00 4.08
264 265 3.889815 CATCTAGTGGAATCCCTGCAAA 58.110 45.455 0.00 0.00 0.00 3.68
265 266 3.634397 TCTAGTGGAATCCCTGCAAAG 57.366 47.619 0.00 0.00 0.00 2.77
266 267 3.181329 TCTAGTGGAATCCCTGCAAAGA 58.819 45.455 0.00 0.00 0.00 2.52
267 268 2.206576 AGTGGAATCCCTGCAAAGAC 57.793 50.000 0.00 0.00 0.00 3.01
268 269 1.707427 AGTGGAATCCCTGCAAAGACT 59.293 47.619 0.00 0.00 0.00 3.24
269 270 2.108952 AGTGGAATCCCTGCAAAGACTT 59.891 45.455 0.00 0.00 0.00 3.01
270 271 3.330701 AGTGGAATCCCTGCAAAGACTTA 59.669 43.478 0.00 0.00 0.00 2.24
271 272 4.018050 AGTGGAATCCCTGCAAAGACTTAT 60.018 41.667 0.00 0.00 0.00 1.73
272 273 5.191722 AGTGGAATCCCTGCAAAGACTTATA 59.808 40.000 0.00 0.00 0.00 0.98
273 274 6.064717 GTGGAATCCCTGCAAAGACTTATAT 58.935 40.000 0.00 0.00 0.00 0.86
274 275 6.547510 GTGGAATCCCTGCAAAGACTTATATT 59.452 38.462 0.00 0.00 0.00 1.28
275 276 7.068716 GTGGAATCCCTGCAAAGACTTATATTT 59.931 37.037 0.00 0.00 0.00 1.40
276 277 8.278639 TGGAATCCCTGCAAAGACTTATATTTA 58.721 33.333 0.00 0.00 0.00 1.40
277 278 8.787852 GGAATCCCTGCAAAGACTTATATTTAG 58.212 37.037 0.00 0.00 0.00 1.85
278 279 8.697507 AATCCCTGCAAAGACTTATATTTAGG 57.302 34.615 0.00 0.00 0.00 2.69
279 280 7.446106 TCCCTGCAAAGACTTATATTTAGGA 57.554 36.000 0.00 0.00 0.00 2.94
280 281 7.867921 TCCCTGCAAAGACTTATATTTAGGAA 58.132 34.615 0.00 0.00 0.00 3.36
281 282 7.773690 TCCCTGCAAAGACTTATATTTAGGAAC 59.226 37.037 0.00 0.00 0.00 3.62
282 283 7.254795 CCCTGCAAAGACTTATATTTAGGAACG 60.255 40.741 0.00 0.00 0.00 3.95
283 284 7.494625 CCTGCAAAGACTTATATTTAGGAACGA 59.505 37.037 0.00 0.00 0.00 3.85
284 285 8.780846 TGCAAAGACTTATATTTAGGAACGAA 57.219 30.769 0.00 0.00 0.00 3.85
285 286 8.879759 TGCAAAGACTTATATTTAGGAACGAAG 58.120 33.333 0.00 0.00 0.00 3.79
286 287 8.336080 GCAAAGACTTATATTTAGGAACGAAGG 58.664 37.037 0.00 0.00 0.00 3.46
287 288 8.827677 CAAAGACTTATATTTAGGAACGAAGGG 58.172 37.037 0.00 0.00 0.00 3.95
288 289 7.909485 AGACTTATATTTAGGAACGAAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
289 290 7.953752 AGACTTATATTTAGGAACGAAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
309 310 7.793036 AGGGAGTATAATACCAGAACTTGTTC 58.207 38.462 3.85 5.44 0.00 3.18
329 330 4.011046 CAACACCGCCTTTGTTGC 57.989 55.556 6.76 0.00 45.36 4.17
336 337 0.950071 CCGCCTTTGTTGCAAATGGG 60.950 55.000 0.00 2.58 0.00 4.00
339 340 1.344114 GCCTTTGTTGCAAATGGGAGA 59.656 47.619 0.00 0.00 0.00 3.71
342 343 3.258872 CCTTTGTTGCAAATGGGAGATGA 59.741 43.478 0.00 0.00 0.00 2.92
343 344 4.491676 CTTTGTTGCAAATGGGAGATGAG 58.508 43.478 0.00 0.00 0.00 2.90
345 346 1.135721 GTTGCAAATGGGAGATGAGGC 59.864 52.381 0.00 0.00 0.00 4.70
363 364 1.737793 GGCTTGTGAGTGGGTTAATCG 59.262 52.381 0.00 0.00 0.00 3.34
367 368 3.260475 TGTGAGTGGGTTAATCGGATG 57.740 47.619 0.00 0.00 0.00 3.51
423 424 3.325135 CGGGGGATGTTTTCTAGCTATCT 59.675 47.826 0.00 0.00 0.00 1.98
427 428 5.301555 GGGATGTTTTCTAGCTATCTGTCC 58.698 45.833 0.00 0.00 0.00 4.02
433 434 0.238817 CTAGCTATCTGTCCGCGGAC 59.761 60.000 43.88 43.88 44.77 4.79
441 442 4.944372 GTCCGCGGACGCATAGGG 62.944 72.222 39.77 9.54 42.06 3.53
444 445 4.201679 CGCGGACGCATAGGGTGA 62.202 66.667 17.35 0.00 42.06 4.02
445 446 2.585247 GCGGACGCATAGGGTGAC 60.585 66.667 12.31 0.00 41.49 3.67
483 484 2.791383 TGTGTAGCCAAAATGTGTGC 57.209 45.000 0.00 0.00 0.00 4.57
484 485 2.305928 TGTGTAGCCAAAATGTGTGCT 58.694 42.857 0.00 0.00 37.47 4.40
491 492 3.194116 AGCCAAAATGTGTGCTTGGATAG 59.806 43.478 4.28 0.00 41.88 2.08
516 517 2.683859 CGCAGCATCACACCTGTGG 61.684 63.158 5.60 0.00 45.65 4.17
551 552 0.255890 GAGAATTGCCTGGGCCTGTA 59.744 55.000 4.53 0.00 41.09 2.74
571 572 6.055231 TGTATGTTTCGTGTCCTGAAAAAG 57.945 37.500 0.00 0.00 37.10 2.27
592 593 0.322816 TACCGAGCGACCCACTAGTT 60.323 55.000 0.00 0.00 0.00 2.24
596 597 1.471684 CGAGCGACCCACTAGTTAGTT 59.528 52.381 0.00 0.00 33.46 2.24
597 598 2.477525 CGAGCGACCCACTAGTTAGTTC 60.478 54.545 0.00 0.00 33.46 3.01
790 799 1.910772 CCTCTCCTCCCCGGCATAG 60.911 68.421 0.00 0.00 0.00 2.23
1486 1495 1.610673 GGGTCACCCTCAGCAGAGA 60.611 63.158 5.22 0.00 44.98 3.10
1707 1716 3.394836 GAGGGCGCCTCTCTGGTT 61.395 66.667 28.56 1.59 46.41 3.67
1720 1729 1.553248 CTCTGGTTATGTCCCGTTCCA 59.447 52.381 0.00 0.00 0.00 3.53
1803 1812 0.616395 TGTCCCGCTATCTGGTGGAA 60.616 55.000 0.00 0.00 39.04 3.53
1883 1892 6.537355 TCAGAATCTTTGAGATGAACCTTGT 58.463 36.000 0.00 0.00 34.65 3.16
1986 1995 0.107945 GCTCTAGGGCTGTTGAGGTG 60.108 60.000 7.56 0.00 0.00 4.00
2025 2034 5.280215 GCTCCAACTGGGTAGCATCTATTAT 60.280 44.000 4.90 0.00 38.74 1.28
2172 2181 4.938226 CGAAAATTTACTTCAGAGGGCTCT 59.062 41.667 0.00 0.00 41.37 4.09
2214 2223 3.557898 CCTGACTCAGTATGCAGTTTGGT 60.558 47.826 5.32 0.00 34.76 3.67
2325 2334 8.896744 AGTAGATTCATGTGAACAAATGTATGG 58.103 33.333 5.10 0.00 36.80 2.74
2363 2372 7.959658 TCAATCAATCATATTTTGTGTCCCT 57.040 32.000 0.00 0.00 0.00 4.20
2379 2388 5.063880 GTGTCCCTTGAACATTGTTAGAGT 58.936 41.667 1.15 0.00 0.00 3.24
2392 2401 7.287810 ACATTGTTAGAGTTTGTTTACTCCCT 58.712 34.615 0.00 0.00 44.50 4.20
2471 2481 3.314553 TCTAGCAAACGAAACTTCTCCG 58.685 45.455 0.00 0.00 0.00 4.63
2476 2486 0.031721 AACGAAACTTCTCCGCGAGT 59.968 50.000 8.23 0.00 0.00 4.18
2522 2532 0.605319 GGCACCGTGATCCAAACAGA 60.605 55.000 1.65 0.00 0.00 3.41
2536 2546 0.111061 AACAGAGCATGCAGTTCCCA 59.889 50.000 21.98 0.00 0.00 4.37
2555 2565 4.478317 TCCCAGATGAAACTATTGGTGGAT 59.522 41.667 0.00 0.00 0.00 3.41
2558 2568 6.263168 CCCAGATGAAACTATTGGTGGATAAC 59.737 42.308 0.00 0.00 0.00 1.89
2559 2569 6.828273 CCAGATGAAACTATTGGTGGATAACA 59.172 38.462 0.00 0.00 0.00 2.41
2593 2603 4.322725 CCCATGCCTTGATATTAGCTCGTA 60.323 45.833 0.00 0.00 0.00 3.43
2631 2641 2.968574 CCTCATGATGTGTAGTAGGGCT 59.031 50.000 0.00 0.00 0.00 5.19
2639 2649 0.546122 TGTAGTAGGGCTTGCCATGG 59.454 55.000 7.63 7.63 0.00 3.66
2687 2698 2.392662 TCATCCTTGAGCCAGGTAGAG 58.607 52.381 0.00 0.00 35.15 2.43
2808 2821 7.947890 TGGAGGAACCAATGATTTAGTAGTTTT 59.052 33.333 0.00 0.00 46.75 2.43
2809 2822 8.803235 GGAGGAACCAATGATTTAGTAGTTTTT 58.197 33.333 0.00 0.00 38.79 1.94
2859 2892 9.310449 TCTACAGAAGTTACAGTCCTTATTCTT 57.690 33.333 0.00 0.00 0.00 2.52
3020 3053 6.046593 CCACTAGTCACAACACAACTAGAAA 58.953 40.000 13.97 0.00 43.30 2.52
3021 3054 6.018994 CCACTAGTCACAACACAACTAGAAAC 60.019 42.308 13.97 0.00 43.30 2.78
3079 3112 7.770897 AGATCCAGAGTATTCCATTTGTTACAC 59.229 37.037 0.00 0.00 0.00 2.90
3097 3130 3.480470 ACACTTTGCAGTCACAGCTTAT 58.520 40.909 0.00 0.00 0.00 1.73
3114 3147 5.533903 CAGCTTATGTAGGAATGATGGCTTT 59.466 40.000 0.00 0.00 0.00 3.51
3125 3158 5.240403 GGAATGATGGCTTTCTAGCTTTAGG 59.760 44.000 0.00 0.00 46.90 2.69
3133 3166 5.968784 GCTTTCTAGCTTTAGGTAGCCCCT 61.969 50.000 10.38 0.00 44.80 4.79
3134 3167 3.416414 TCTAGCTTTAGGTAGCCCCTT 57.584 47.619 10.38 0.00 42.73 3.95
3135 3168 3.732595 TCTAGCTTTAGGTAGCCCCTTT 58.267 45.455 10.38 0.00 42.73 3.11
3136 3169 4.109320 TCTAGCTTTAGGTAGCCCCTTTT 58.891 43.478 10.38 0.00 42.73 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.690203 TGAAGAATGGACAGAGTTTTATTGAA 57.310 30.769 0.00 0.00 0.00 2.69
80 81 3.197983 CCTACTCTCTGGTAGTTTTGGGG 59.802 52.174 0.00 0.00 37.92 4.96
81 82 4.094476 TCCTACTCTCTGGTAGTTTTGGG 58.906 47.826 0.00 0.00 37.92 4.12
91 92 2.676748 AGATGCCTTCCTACTCTCTGG 58.323 52.381 0.00 0.00 0.00 3.86
95 96 3.689872 TGGTAGATGCCTTCCTACTCT 57.310 47.619 0.00 0.00 36.43 3.24
96 97 3.007398 CCATGGTAGATGCCTTCCTACTC 59.993 52.174 2.57 0.00 36.43 2.59
97 98 2.975489 CCATGGTAGATGCCTTCCTACT 59.025 50.000 2.57 0.00 36.43 2.57
98 99 2.551071 GCCATGGTAGATGCCTTCCTAC 60.551 54.545 14.67 0.00 35.67 3.18
99 100 1.699634 GCCATGGTAGATGCCTTCCTA 59.300 52.381 14.67 0.00 31.78 2.94
100 101 0.475906 GCCATGGTAGATGCCTTCCT 59.524 55.000 14.67 0.00 31.78 3.36
101 102 0.475906 AGCCATGGTAGATGCCTTCC 59.524 55.000 14.67 0.00 0.00 3.46
102 103 3.492102 TTAGCCATGGTAGATGCCTTC 57.508 47.619 14.67 0.00 0.00 3.46
103 104 4.105377 AGAATTAGCCATGGTAGATGCCTT 59.895 41.667 14.67 0.00 0.00 4.35
114 115 8.965986 CATGATCATGTTAAGAATTAGCCATG 57.034 34.615 24.87 0.00 40.30 3.66
135 136 2.225382 TGAACGGAGGGAGTACATGA 57.775 50.000 0.00 0.00 0.00 3.07
139 140 8.583296 ACTTATATTTATGAACGGAGGGAGTAC 58.417 37.037 0.00 0.00 0.00 2.73
140 141 8.716674 ACTTATATTTATGAACGGAGGGAGTA 57.283 34.615 0.00 0.00 0.00 2.59
141 142 7.509659 AGACTTATATTTATGAACGGAGGGAGT 59.490 37.037 0.00 0.00 0.00 3.85
142 143 7.897864 AGACTTATATTTATGAACGGAGGGAG 58.102 38.462 0.00 0.00 0.00 4.30
143 144 7.850935 AGACTTATATTTATGAACGGAGGGA 57.149 36.000 0.00 0.00 0.00 4.20
144 145 8.904099 AAAGACTTATATTTATGAACGGAGGG 57.096 34.615 0.00 0.00 0.00 4.30
170 171 9.988815 GTATGTGGTTCATAGTGAAATCTCTAT 57.011 33.333 0.00 0.37 38.22 1.98
171 172 8.977412 TGTATGTGGTTCATAGTGAAATCTCTA 58.023 33.333 0.00 0.00 38.22 2.43
172 173 7.851228 TGTATGTGGTTCATAGTGAAATCTCT 58.149 34.615 0.00 0.00 38.22 3.10
173 174 7.981789 TCTGTATGTGGTTCATAGTGAAATCTC 59.018 37.037 0.00 0.00 38.22 2.75
174 175 7.851228 TCTGTATGTGGTTCATAGTGAAATCT 58.149 34.615 0.00 0.00 38.22 2.40
175 176 8.554528 CATCTGTATGTGGTTCATAGTGAAATC 58.445 37.037 0.00 0.00 38.22 2.17
176 177 8.049117 ACATCTGTATGTGGTTCATAGTGAAAT 58.951 33.333 0.00 0.00 44.79 2.17
177 178 7.394016 ACATCTGTATGTGGTTCATAGTGAAA 58.606 34.615 0.00 0.00 44.79 2.69
178 179 6.946340 ACATCTGTATGTGGTTCATAGTGAA 58.054 36.000 0.00 0.00 44.79 3.18
179 180 6.544928 ACATCTGTATGTGGTTCATAGTGA 57.455 37.500 0.00 0.00 44.79 3.41
186 187 9.307121 GCATCTATATACATCTGTATGTGGTTC 57.693 37.037 12.10 0.75 45.99 3.62
187 188 8.815912 TGCATCTATATACATCTGTATGTGGTT 58.184 33.333 12.10 1.86 45.99 3.67
188 189 8.366359 TGCATCTATATACATCTGTATGTGGT 57.634 34.615 12.10 0.00 45.99 4.16
189 190 9.828039 AATGCATCTATATACATCTGTATGTGG 57.172 33.333 12.10 8.21 45.99 4.17
217 218 8.677300 GGAGCAAAATGAATGAATCTACACTTA 58.323 33.333 0.00 0.00 0.00 2.24
218 219 7.177216 TGGAGCAAAATGAATGAATCTACACTT 59.823 33.333 0.00 0.00 0.00 3.16
219 220 6.660521 TGGAGCAAAATGAATGAATCTACACT 59.339 34.615 0.00 0.00 0.00 3.55
220 221 6.855836 TGGAGCAAAATGAATGAATCTACAC 58.144 36.000 0.00 0.00 0.00 2.90
221 222 7.558807 AGATGGAGCAAAATGAATGAATCTACA 59.441 33.333 0.00 0.00 0.00 2.74
222 223 7.938715 AGATGGAGCAAAATGAATGAATCTAC 58.061 34.615 0.00 0.00 0.00 2.59
223 224 9.281371 CTAGATGGAGCAAAATGAATGAATCTA 57.719 33.333 0.00 0.00 0.00 1.98
224 225 7.778853 ACTAGATGGAGCAAAATGAATGAATCT 59.221 33.333 0.00 0.00 0.00 2.40
225 226 7.861372 CACTAGATGGAGCAAAATGAATGAATC 59.139 37.037 0.00 0.00 0.00 2.52
226 227 7.713750 CACTAGATGGAGCAAAATGAATGAAT 58.286 34.615 0.00 0.00 0.00 2.57
227 228 7.092137 CACTAGATGGAGCAAAATGAATGAA 57.908 36.000 0.00 0.00 0.00 2.57
228 229 6.688637 CACTAGATGGAGCAAAATGAATGA 57.311 37.500 0.00 0.00 0.00 2.57
243 244 3.565764 TTGCAGGGATTCCACTAGATG 57.434 47.619 4.80 0.00 34.83 2.90
244 245 3.782523 TCTTTGCAGGGATTCCACTAGAT 59.217 43.478 4.80 0.00 34.83 1.98
245 246 3.055094 GTCTTTGCAGGGATTCCACTAGA 60.055 47.826 4.80 0.00 34.83 2.43
246 247 3.054802 AGTCTTTGCAGGGATTCCACTAG 60.055 47.826 4.80 0.00 34.83 2.57
247 248 2.912956 AGTCTTTGCAGGGATTCCACTA 59.087 45.455 4.80 0.00 34.83 2.74
248 249 1.707427 AGTCTTTGCAGGGATTCCACT 59.293 47.619 4.80 0.00 34.83 4.00
249 250 2.206576 AGTCTTTGCAGGGATTCCAC 57.793 50.000 4.80 0.00 34.83 4.02
250 251 2.978156 AAGTCTTTGCAGGGATTCCA 57.022 45.000 4.80 0.00 34.83 3.53
251 252 7.588497 AAATATAAGTCTTTGCAGGGATTCC 57.412 36.000 0.00 0.00 0.00 3.01
252 253 8.787852 CCTAAATATAAGTCTTTGCAGGGATTC 58.212 37.037 0.00 0.00 0.00 2.52
253 254 8.502738 TCCTAAATATAAGTCTTTGCAGGGATT 58.497 33.333 0.00 0.00 0.00 3.01
254 255 8.045720 TCCTAAATATAAGTCTTTGCAGGGAT 57.954 34.615 0.00 0.00 0.00 3.85
255 256 7.446106 TCCTAAATATAAGTCTTTGCAGGGA 57.554 36.000 0.00 0.00 0.00 4.20
256 257 7.254795 CGTTCCTAAATATAAGTCTTTGCAGGG 60.255 40.741 0.00 0.00 0.00 4.45
257 258 7.494625 TCGTTCCTAAATATAAGTCTTTGCAGG 59.505 37.037 0.00 0.00 0.00 4.85
258 259 8.420374 TCGTTCCTAAATATAAGTCTTTGCAG 57.580 34.615 0.00 0.00 0.00 4.41
259 260 8.780846 TTCGTTCCTAAATATAAGTCTTTGCA 57.219 30.769 0.00 0.00 0.00 4.08
260 261 8.336080 CCTTCGTTCCTAAATATAAGTCTTTGC 58.664 37.037 0.00 0.00 0.00 3.68
261 262 8.827677 CCCTTCGTTCCTAAATATAAGTCTTTG 58.172 37.037 0.00 0.00 0.00 2.77
262 263 8.765517 TCCCTTCGTTCCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
263 264 8.315220 TCCCTTCGTTCCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
264 265 7.564292 ACTCCCTTCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
265 266 7.724287 ACTCCCTTCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
266 267 7.672122 ACTCCCTTCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
272 273 8.591940 GGTATTATACTCCCTTCGTTCCTAAAT 58.408 37.037 2.21 0.00 0.00 1.40
273 274 7.564660 TGGTATTATACTCCCTTCGTTCCTAAA 59.435 37.037 2.21 0.00 0.00 1.85
274 275 7.068702 TGGTATTATACTCCCTTCGTTCCTAA 58.931 38.462 2.21 0.00 0.00 2.69
275 276 6.613699 TGGTATTATACTCCCTTCGTTCCTA 58.386 40.000 2.21 0.00 0.00 2.94
276 277 5.461327 TGGTATTATACTCCCTTCGTTCCT 58.539 41.667 2.21 0.00 0.00 3.36
277 278 5.537674 TCTGGTATTATACTCCCTTCGTTCC 59.462 44.000 2.21 0.00 0.00 3.62
278 279 6.645790 TCTGGTATTATACTCCCTTCGTTC 57.354 41.667 2.21 0.00 0.00 3.95
279 280 6.610425 AGTTCTGGTATTATACTCCCTTCGTT 59.390 38.462 2.21 0.00 0.00 3.85
280 281 6.134754 AGTTCTGGTATTATACTCCCTTCGT 58.865 40.000 2.21 0.00 0.00 3.85
281 282 6.651975 AGTTCTGGTATTATACTCCCTTCG 57.348 41.667 2.21 0.00 0.00 3.79
282 283 7.793036 ACAAGTTCTGGTATTATACTCCCTTC 58.207 38.462 2.21 0.00 0.00 3.46
283 284 7.750947 ACAAGTTCTGGTATTATACTCCCTT 57.249 36.000 2.21 0.00 0.00 3.95
284 285 7.147532 GGAACAAGTTCTGGTATTATACTCCCT 60.148 40.741 12.22 0.00 39.45 4.20
285 286 6.990939 GGAACAAGTTCTGGTATTATACTCCC 59.009 42.308 12.22 0.00 39.45 4.30
286 287 6.700520 CGGAACAAGTTCTGGTATTATACTCC 59.299 42.308 12.82 0.00 41.15 3.85
287 288 6.200475 GCGGAACAAGTTCTGGTATTATACTC 59.800 42.308 20.03 0.03 44.13 2.59
288 289 6.047231 GCGGAACAAGTTCTGGTATTATACT 58.953 40.000 20.03 0.00 44.13 2.12
289 290 5.813672 TGCGGAACAAGTTCTGGTATTATAC 59.186 40.000 20.03 0.00 44.13 1.47
309 310 3.132481 AACAAAGGCGGTGTTGCGG 62.132 57.895 7.86 0.00 37.80 5.69
329 330 2.426024 CACAAGCCTCATCTCCCATTTG 59.574 50.000 0.00 0.00 0.00 2.32
336 337 1.406614 CCCACTCACAAGCCTCATCTC 60.407 57.143 0.00 0.00 0.00 2.75
339 340 0.773644 AACCCACTCACAAGCCTCAT 59.226 50.000 0.00 0.00 0.00 2.90
342 343 2.615493 CGATTAACCCACTCACAAGCCT 60.615 50.000 0.00 0.00 0.00 4.58
343 344 1.737793 CGATTAACCCACTCACAAGCC 59.262 52.381 0.00 0.00 0.00 4.35
345 346 3.328382 TCCGATTAACCCACTCACAAG 57.672 47.619 0.00 0.00 0.00 3.16
401 402 3.325135 AGATAGCTAGAAAACATCCCCCG 59.675 47.826 0.00 0.00 0.00 5.73
404 405 5.301555 GGACAGATAGCTAGAAAACATCCC 58.698 45.833 0.00 0.00 0.00 3.85
423 424 4.201679 CCTATGCGTCCGCGGACA 62.202 66.667 46.26 33.96 44.77 4.02
427 428 4.201679 TCACCCTATGCGTCCGCG 62.202 66.667 7.22 0.00 45.51 6.46
433 434 1.094785 CTTTTGGGTCACCCTATGCG 58.905 55.000 16.04 0.00 45.70 4.73
434 435 2.215942 ACTTTTGGGTCACCCTATGC 57.784 50.000 16.04 0.00 45.70 3.14
435 436 5.185056 CCTAAAACTTTTGGGTCACCCTATG 59.815 44.000 16.04 7.14 45.70 2.23
436 437 5.075344 TCCTAAAACTTTTGGGTCACCCTAT 59.925 40.000 16.04 0.00 45.70 2.57
437 438 4.416179 TCCTAAAACTTTTGGGTCACCCTA 59.584 41.667 16.04 2.71 45.70 3.53
438 439 3.205733 TCCTAAAACTTTTGGGTCACCCT 59.794 43.478 16.04 0.00 45.70 4.34
439 440 3.568443 TCCTAAAACTTTTGGGTCACCC 58.432 45.455 5.63 5.63 45.71 4.61
441 442 7.011016 CACAAATTCCTAAAACTTTTGGGTCAC 59.989 37.037 14.47 0.00 34.46 3.67
442 443 7.044798 CACAAATTCCTAAAACTTTTGGGTCA 58.955 34.615 14.47 5.49 34.46 4.02
443 444 7.045416 ACACAAATTCCTAAAACTTTTGGGTC 58.955 34.615 14.47 0.00 39.08 4.46
444 445 6.953101 ACACAAATTCCTAAAACTTTTGGGT 58.047 32.000 14.47 0.00 38.67 4.51
445 446 7.170828 GCTACACAAATTCCTAAAACTTTTGGG 59.829 37.037 9.82 9.82 36.88 4.12
446 447 7.170828 GGCTACACAAATTCCTAAAACTTTTGG 59.829 37.037 0.00 0.00 34.91 3.28
447 448 7.708752 TGGCTACACAAATTCCTAAAACTTTTG 59.291 33.333 0.00 0.00 34.34 2.44
449 450 7.354751 TGGCTACACAAATTCCTAAAACTTT 57.645 32.000 0.00 0.00 0.00 2.66
450 451 6.969993 TGGCTACACAAATTCCTAAAACTT 57.030 33.333 0.00 0.00 0.00 2.66
451 452 6.969993 TTGGCTACACAAATTCCTAAAACT 57.030 33.333 0.00 0.00 0.00 2.66
452 453 8.495148 CATTTTGGCTACACAAATTCCTAAAAC 58.505 33.333 0.00 0.00 39.80 2.43
453 454 8.207545 ACATTTTGGCTACACAAATTCCTAAAA 58.792 29.630 0.00 0.00 39.80 1.52
454 455 7.655328 CACATTTTGGCTACACAAATTCCTAAA 59.345 33.333 0.00 0.00 39.80 1.85
455 456 7.151308 CACATTTTGGCTACACAAATTCCTAA 58.849 34.615 0.00 0.00 39.80 2.69
456 457 6.266558 ACACATTTTGGCTACACAAATTCCTA 59.733 34.615 0.00 0.00 39.80 2.94
457 458 5.070313 ACACATTTTGGCTACACAAATTCCT 59.930 36.000 0.00 0.00 39.80 3.36
458 459 5.177327 CACACATTTTGGCTACACAAATTCC 59.823 40.000 0.00 0.00 39.80 3.01
491 492 1.816679 TGTGATGCTGCGAGGATGC 60.817 57.895 0.00 0.00 0.00 3.91
492 493 1.434622 GGTGTGATGCTGCGAGGATG 61.435 60.000 0.00 0.00 0.00 3.51
551 552 3.632145 AGCTTTTTCAGGACACGAAACAT 59.368 39.130 0.00 0.00 32.27 2.71
571 572 2.061182 CTAGTGGGTCGCTCGGTAGC 62.061 65.000 0.00 0.00 45.86 3.58
610 613 5.630661 TTCTCGAAGAAGTTAGGTGAGAG 57.369 43.478 0.00 0.00 34.09 3.20
928 937 0.318614 CTGCAACACGCCGGAAAAAT 60.319 50.000 5.05 0.00 41.33 1.82
1373 1382 2.363018 TGAGCCTGTCGGGGAGAG 60.363 66.667 0.00 0.00 35.12 3.20
1554 1563 1.003355 ACCGCAAGTGATCCAGTGG 60.003 57.895 1.40 1.40 37.65 4.00
1695 1704 0.105039 GGGACATAACCAGAGAGGCG 59.895 60.000 0.00 0.00 43.14 5.52
1707 1716 1.273154 TGGTAGGTGGAACGGGACATA 60.273 52.381 0.00 0.00 38.12 2.29
1720 1729 1.115467 CGCTTCTGGATCTGGTAGGT 58.885 55.000 0.00 0.00 0.00 3.08
1778 1787 0.817654 CAGATAGCGGGACACTGTGA 59.182 55.000 15.86 0.00 0.00 3.58
1803 1812 0.106918 TTAGCAATTTCCCGCGGGAT 60.107 50.000 45.44 31.63 44.74 3.85
1883 1892 3.970410 CCCCAGCAGGAGCAACCA 61.970 66.667 0.00 0.00 45.49 3.67
1986 1995 3.895232 TGGAGCCTATTGAACTGAGAC 57.105 47.619 0.00 0.00 0.00 3.36
2025 2034 3.441222 TGTCGAAGCTAGTATCGTCCAAA 59.559 43.478 15.64 0.00 39.91 3.28
2073 2082 5.118990 CCCATGTCAGTACTGGAATACTTG 58.881 45.833 22.48 18.38 32.92 3.16
2214 2223 3.439857 AGACAGGCTTGCTAAATTCCA 57.560 42.857 0.00 0.00 0.00 3.53
2262 2271 7.227314 TGAATATACAGTGCCTAGCATCTTTTG 59.773 37.037 0.00 0.00 41.91 2.44
2308 2317 5.664294 ACATGCCATACATTTGTTCACAT 57.336 34.783 0.00 0.00 36.64 3.21
2325 2334 3.513680 TGATTGATGCTTCCAACATGC 57.486 42.857 0.00 0.00 0.00 4.06
2363 2372 9.997482 GAGTAAACAAACTCTAACAATGTTCAA 57.003 29.630 0.22 0.00 42.21 2.69
2379 2388 6.399743 GTTCCACAAAAAGGGAGTAAACAAA 58.600 36.000 0.00 0.00 34.02 2.83
2392 2401 4.698304 CGCTAGATTAGGGTTCCACAAAAA 59.302 41.667 0.00 0.00 34.39 1.94
2522 2532 0.622136 TCATCTGGGAACTGCATGCT 59.378 50.000 20.33 0.00 0.00 3.79
2536 2546 7.056635 CCTGTTATCCACCAATAGTTTCATCT 58.943 38.462 0.00 0.00 0.00 2.90
2555 2565 2.101783 CATGGGCAATTGCTCCTGTTA 58.898 47.619 27.11 8.86 41.95 2.41
2558 2568 1.143183 GCATGGGCAATTGCTCCTG 59.857 57.895 27.11 26.50 41.95 3.86
2559 2569 2.062177 GGCATGGGCAATTGCTCCT 61.062 57.895 27.11 15.36 41.95 3.69
2631 2641 1.707989 TGACTAAACCTCCCATGGCAA 59.292 47.619 6.09 0.00 0.00 4.52
2639 2649 5.850614 TGACTACAAGTTGACTAAACCTCC 58.149 41.667 10.54 0.00 39.85 4.30
2687 2698 6.465948 AGATTGCAGAGGATATCAGAACATC 58.534 40.000 4.83 0.00 0.00 3.06
2822 2835 9.591792 CTGTAACTTCTGTAGATTGATGATTCA 57.408 33.333 0.00 0.00 0.00 2.57
2976 3009 7.543359 AGTGGATTCATTTCAATTTCTTCCA 57.457 32.000 0.00 0.00 0.00 3.53
3020 3053 5.126067 GCATGGACTACTAATTGGTGATGT 58.874 41.667 4.47 1.11 0.00 3.06
3021 3054 5.125356 TGCATGGACTACTAATTGGTGATG 58.875 41.667 4.47 1.12 0.00 3.07
3049 3082 8.038862 ACAAATGGAATACTCTGGATCTGTAT 57.961 34.615 0.00 0.00 0.00 2.29
3054 3087 7.770897 AGTGTAACAAATGGAATACTCTGGATC 59.229 37.037 0.00 0.00 41.43 3.36
3079 3112 4.093998 CCTACATAAGCTGTGACTGCAAAG 59.906 45.833 16.67 6.04 38.92 2.77
3097 3130 4.708177 GCTAGAAAGCCATCATTCCTACA 58.292 43.478 0.00 0.00 43.40 2.74
3160 3193 8.651389 TGCTATATATACAGATCATTTAGGGGC 58.349 37.037 0.00 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.