Multiple sequence alignment - TraesCS3B01G266300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G266300 chr3B 100.000 2255 0 0 1 2255 427002368 427000114 0.000000e+00 4165.0
1 TraesCS3B01G266300 chr3D 93.847 1999 92 13 270 2255 329499582 329497602 0.000000e+00 2981.0
2 TraesCS3B01G266300 chr3D 87.037 54 6 1 98 151 26819946 26819998 2.420000e-05 60.2
3 TraesCS3B01G266300 chr3A 92.522 1685 86 25 593 2255 444538673 444537007 0.000000e+00 2377.0
4 TraesCS3B01G266300 chr3A 91.400 407 28 5 155 554 444539071 444538665 3.270000e-153 551.0
5 TraesCS3B01G266300 chr3A 81.410 156 16 5 4 159 444542246 444542104 5.090000e-22 115.0
6 TraesCS3B01G266300 chr1B 78.344 314 67 1 952 1265 662520771 662521083 3.800000e-48 202.0
7 TraesCS3B01G266300 chr1D 77.707 314 69 1 952 1265 476208169 476208481 8.220000e-45 191.0
8 TraesCS3B01G266300 chr4D 83.673 98 8 5 51 148 482363719 482363630 3.990000e-13 86.1
9 TraesCS3B01G266300 chr5A 88.889 63 4 2 195 254 55100165 55100227 8.640000e-10 75.0
10 TraesCS3B01G266300 chr7D 87.037 54 6 1 98 151 59311736 59311788 2.420000e-05 60.2
11 TraesCS3B01G266300 chr2D 87.037 54 6 1 98 151 72514673 72514621 2.420000e-05 60.2
12 TraesCS3B01G266300 chr5B 97.059 34 0 1 222 254 244740498 244740531 3.130000e-04 56.5
13 TraesCS3B01G266300 chr2A 100.000 28 0 0 123 150 153533094 153533121 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G266300 chr3B 427000114 427002368 2254 True 4165.000000 4165 100.000 1 2255 1 chr3B.!!$R1 2254
1 TraesCS3B01G266300 chr3D 329497602 329499582 1980 True 2981.000000 2981 93.847 270 2255 1 chr3D.!!$R1 1985
2 TraesCS3B01G266300 chr3A 444537007 444542246 5239 True 1014.333333 2377 88.444 4 2255 3 chr3A.!!$R1 2251

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
617 3663 0.107508 AGACTCCAACCGCATCATGG 60.108 55.0 0.0 0.0 35.49 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1968 5038 0.251386 AGAGCGGAAGTCTCCTGTCA 60.251 55.0 0.0 0.0 39.93 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.701539 TGCACATTTCTGGTATACATCTTTT 57.298 32.000 5.01 0.00 0.00 2.27
76 77 7.907214 CTACCCCTGTAGCAAAATATATGAC 57.093 40.000 0.00 0.00 38.20 3.06
82 83 8.443160 CCCTGTAGCAAAATATATGACGTATTG 58.557 37.037 0.00 0.00 0.00 1.90
83 84 7.957484 CCTGTAGCAAAATATATGACGTATTGC 59.043 37.037 0.00 0.00 41.34 3.56
84 85 8.371770 TGTAGCAAAATATATGACGTATTGCA 57.628 30.769 11.43 0.00 42.95 4.08
85 86 8.495148 TGTAGCAAAATATATGACGTATTGCAG 58.505 33.333 11.43 0.00 42.95 4.41
86 87 7.496529 AGCAAAATATATGACGTATTGCAGT 57.503 32.000 11.43 0.00 42.95 4.40
88 89 8.070171 AGCAAAATATATGACGTATTGCAGTTC 58.930 33.333 11.43 0.00 42.95 3.01
89 90 7.058354 GCAAAATATATGACGTATTGCAGTTCG 59.942 37.037 6.69 6.69 40.86 3.95
91 92 6.929587 ATATATGACGTATTGCAGTTCGAC 57.070 37.500 14.80 9.21 0.00 4.20
92 93 2.425578 TGACGTATTGCAGTTCGACA 57.574 45.000 14.80 11.66 0.00 4.35
93 94 2.324860 TGACGTATTGCAGTTCGACAG 58.675 47.619 14.80 0.00 0.00 3.51
94 95 1.059264 GACGTATTGCAGTTCGACAGC 59.941 52.381 14.80 0.00 0.00 4.40
95 96 1.336887 ACGTATTGCAGTTCGACAGCT 60.337 47.619 14.80 0.00 31.40 4.24
99 100 1.882912 TTGCAGTTCGACAGCTCAAT 58.117 45.000 4.79 0.00 31.40 2.57
101 102 2.221169 TGCAGTTCGACAGCTCAATTT 58.779 42.857 4.79 0.00 31.40 1.82
102 103 2.031769 TGCAGTTCGACAGCTCAATTTG 60.032 45.455 4.79 0.00 31.40 2.32
103 104 2.224079 GCAGTTCGACAGCTCAATTTGA 59.776 45.455 0.00 0.00 0.00 2.69
104 105 3.303990 GCAGTTCGACAGCTCAATTTGAA 60.304 43.478 0.01 0.00 0.00 2.69
106 107 4.024556 CAGTTCGACAGCTCAATTTGAACT 60.025 41.667 9.53 9.53 43.70 3.01
107 108 4.024556 AGTTCGACAGCTCAATTTGAACTG 60.025 41.667 22.27 22.27 43.98 3.16
159 160 8.190784 GGAGGGAGTACATGATTAACATTTTTG 58.809 37.037 0.00 0.00 37.07 2.44
237 3275 6.599437 ACACGAGAAACATTTTGCTATACAC 58.401 36.000 0.00 0.00 0.00 2.90
241 3279 6.795114 CGAGAAACATTTTGCTATACACGTTT 59.205 34.615 0.00 0.00 0.00 3.60
253 3291 9.731819 TTGCTATACACGTTTAACATTTTTCAA 57.268 25.926 0.00 0.00 0.00 2.69
266 3304 9.752274 TTAACATTTTTCAATTTTATCATGCGC 57.248 25.926 0.00 0.00 0.00 6.09
288 3326 4.202161 GCCGAATAGAAGGTCTCTTGATCA 60.202 45.833 0.00 0.00 35.41 2.92
298 3336 5.426504 AGGTCTCTTGATCAGTTGCATAAG 58.573 41.667 0.00 0.00 0.00 1.73
305 3343 8.394971 TCTTGATCAGTTGCATAAGAAAAGAA 57.605 30.769 0.00 0.00 0.00 2.52
306 3344 8.509690 TCTTGATCAGTTGCATAAGAAAAGAAG 58.490 33.333 0.00 0.00 0.00 2.85
316 3356 7.982224 TGCATAAGAAAAGAAGATGTGATCAG 58.018 34.615 0.00 0.00 0.00 2.90
436 3476 4.392940 ACCAGAGAACCAAATTGAGTCAG 58.607 43.478 0.00 0.00 0.00 3.51
448 3488 1.095600 TGAGTCAGGAATCGACCGAG 58.904 55.000 0.00 0.00 33.70 4.63
492 3538 1.004044 ACTCTGCCTCAACCCTCAATG 59.996 52.381 0.00 0.00 0.00 2.82
565 3611 1.686052 TCACCCAAGTTCATGGCAAAC 59.314 47.619 0.00 0.00 39.26 2.93
574 3620 3.190535 AGTTCATGGCAAACGTAATCCAC 59.809 43.478 4.95 0.00 0.00 4.02
589 3635 1.189524 TCCACGGACCACCTACAAGG 61.190 60.000 0.00 0.00 42.49 3.61
593 3639 1.079336 GGACCACCTACAAGGCGTC 60.079 63.158 5.58 5.58 39.63 5.19
613 3659 0.247736 ACTCAGACTCCAACCGCATC 59.752 55.000 0.00 0.00 0.00 3.91
614 3660 0.247460 CTCAGACTCCAACCGCATCA 59.753 55.000 0.00 0.00 0.00 3.07
615 3661 0.904649 TCAGACTCCAACCGCATCAT 59.095 50.000 0.00 0.00 0.00 2.45
616 3662 1.012086 CAGACTCCAACCGCATCATG 58.988 55.000 0.00 0.00 0.00 3.07
617 3663 0.107508 AGACTCCAACCGCATCATGG 60.108 55.000 0.00 0.00 35.49 3.66
618 3664 1.077501 ACTCCAACCGCATCATGGG 60.078 57.895 0.00 0.00 34.89 4.00
703 3749 7.986562 GGAACGTCAGTCAGCATATATATAGA 58.013 38.462 0.00 0.00 0.00 1.98
725 3771 6.579865 AGAAGAAGAACTAAAGAACCAACGA 58.420 36.000 0.00 0.00 0.00 3.85
806 3858 1.985116 AACGTCCCTGAGCCCTCTC 60.985 63.158 0.00 0.00 39.78 3.20
816 3868 3.383185 CCTGAGCCCTCTCTAACTACAAG 59.617 52.174 0.00 0.00 40.03 3.16
854 3906 3.057245 AGCCGCAAATTCTTTCTTTCTCC 60.057 43.478 0.00 0.00 0.00 3.71
858 3920 4.379918 CGCAAATTCTTTCTTTCTCCCTCC 60.380 45.833 0.00 0.00 0.00 4.30
861 3923 4.582973 ATTCTTTCTTTCTCCCTCCCTG 57.417 45.455 0.00 0.00 0.00 4.45
883 3945 1.069703 CGCCATGCTCGAATAATGTGG 60.070 52.381 0.01 0.00 0.00 4.17
890 3952 2.154462 CTCGAATAATGTGGCATCCCC 58.846 52.381 0.00 0.00 0.00 4.81
900 3962 2.592861 GCATCCCCATCCAGACGC 60.593 66.667 0.00 0.00 0.00 5.19
925 3987 6.665680 CCCACTCCTATATTATCACTAGTGCT 59.334 42.308 18.45 11.39 33.44 4.40
1011 4073 1.271379 ACGACGCTGATGTTGTCCTTA 59.729 47.619 0.00 0.00 30.51 2.69
1101 4163 4.832608 GGGTACTTGGAGGCCGCG 62.833 72.222 0.00 0.00 0.00 6.46
1383 4446 5.452777 GCAGTTTTCTTACCAAAGCTACTG 58.547 41.667 0.00 0.00 37.71 2.74
1387 4454 3.334583 TCTTACCAAAGCTACTGCCAG 57.665 47.619 0.00 0.00 40.80 4.85
1392 4459 1.537202 CCAAAGCTACTGCCAGTGTTC 59.463 52.381 7.83 0.00 40.80 3.18
1408 4475 7.550551 TGCCAGTGTTCATATTTTCAAAACAAA 59.449 29.630 0.00 0.00 32.17 2.83
1488 4555 6.455647 ACAAGAAATGTACAGATCAAGACGA 58.544 36.000 0.33 0.00 41.63 4.20
1512 4579 2.034179 CAGCATCGTACCGATTGACCTA 59.966 50.000 0.00 0.00 44.59 3.08
1636 4703 3.308866 ACCGTCAAAACAAGAGAAAGACG 59.691 43.478 0.00 0.00 44.74 4.18
1654 4723 1.768112 CGTCAACGTTCCCACACACC 61.768 60.000 0.00 0.00 34.11 4.16
1671 4740 2.104281 ACACCACTGTCCTACAAAGGTC 59.896 50.000 1.35 0.00 44.09 3.85
1738 4808 6.151648 CAGCAAAGAGAAATTCCCTAATGTCA 59.848 38.462 0.00 0.00 32.45 3.58
1818 4888 9.639601 CAAAATGATGGATATGATGAGAAATGG 57.360 33.333 0.00 0.00 0.00 3.16
1846 4916 7.413328 GCTTTTGTATAAAGTTACTACCACGGG 60.413 40.741 0.00 0.00 0.00 5.28
1847 4917 5.596836 TGTATAAAGTTACTACCACGGGG 57.403 43.478 0.00 0.00 41.29 5.73
1854 4924 0.260816 TACTACCACGGGGAGAGCAT 59.739 55.000 12.96 0.00 38.05 3.79
1862 4932 1.596934 GGGGAGAGCATGTTCGACA 59.403 57.895 3.72 0.00 0.00 4.35
1892 4962 3.498777 GGCGGATAACTAAAGGCAGAATC 59.501 47.826 0.00 0.00 0.00 2.52
1943 5013 9.353999 GTTTTGAAAACAAGATGTTCTAGTTGT 57.646 29.630 15.34 0.00 40.14 3.32
1946 5016 6.039270 TGAAAACAAGATGTTCTAGTTGTGGG 59.961 38.462 0.00 0.00 40.14 4.61
1957 5027 6.156256 TGTTCTAGTTGTGGGTATATCAAGCT 59.844 38.462 0.00 0.00 0.00 3.74
1968 5038 8.314751 GTGGGTATATCAAGCTATATCAAGTGT 58.685 37.037 0.00 0.00 0.00 3.55
2039 5113 5.957842 GACAAATTGTCTATCACCAACCA 57.042 39.130 18.03 0.00 43.73 3.67
2080 5154 2.017049 CATTGTGCTAGTACCTTGCCC 58.983 52.381 8.60 0.00 31.70 5.36
2118 5192 9.340695 CAAATCTAAATAAAACTGATCAACGCA 57.659 29.630 0.00 0.00 0.00 5.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.701539 AAAAGATGTATACCAGAAATGTGCA 57.298 32.000 0.00 0.00 0.00 4.57
58 59 8.495148 TGCAATACGTCATATATTTTGCTACAG 58.505 33.333 0.00 0.00 38.91 2.74
65 66 8.273557 GTCGAACTGCAATACGTCATATATTTT 58.726 33.333 0.00 0.00 0.00 1.82
73 74 2.324860 CTGTCGAACTGCAATACGTCA 58.675 47.619 0.00 0.00 0.00 4.35
76 77 1.321743 GAGCTGTCGAACTGCAATACG 59.678 52.381 15.27 0.00 44.20 3.06
82 83 2.224079 TCAAATTGAGCTGTCGAACTGC 59.776 45.455 0.00 8.19 42.43 4.40
83 84 4.024556 AGTTCAAATTGAGCTGTCGAACTG 60.025 41.667 11.50 0.00 39.91 3.16
84 85 4.024556 CAGTTCAAATTGAGCTGTCGAACT 60.025 41.667 25.23 8.82 46.36 3.01
85 86 4.214437 CAGTTCAAATTGAGCTGTCGAAC 58.786 43.478 25.23 6.83 46.36 3.95
86 87 4.472691 CAGTTCAAATTGAGCTGTCGAA 57.527 40.909 25.23 0.00 46.36 3.71
111 112 7.201875 CCTCCGTACCAAAATATATGGCTTTTT 60.202 37.037 7.26 0.00 41.89 1.94
112 113 6.264518 CCTCCGTACCAAAATATATGGCTTTT 59.735 38.462 7.26 0.00 41.89 2.27
113 114 5.768164 CCTCCGTACCAAAATATATGGCTTT 59.232 40.000 7.26 0.00 41.89 3.51
114 115 5.313712 CCTCCGTACCAAAATATATGGCTT 58.686 41.667 7.26 0.00 41.89 4.35
115 116 4.263331 CCCTCCGTACCAAAATATATGGCT 60.263 45.833 7.26 0.00 41.89 4.75
116 117 4.007659 CCCTCCGTACCAAAATATATGGC 58.992 47.826 7.26 0.00 41.89 4.40
117 118 5.012768 ACTCCCTCCGTACCAAAATATATGG 59.987 44.000 6.03 6.03 43.84 2.74
118 119 6.110411 ACTCCCTCCGTACCAAAATATATG 57.890 41.667 0.00 0.00 0.00 1.78
119 120 6.783977 TGTACTCCCTCCGTACCAAAATATAT 59.216 38.462 0.00 0.00 37.11 0.86
129 130 5.068198 TGTTAATCATGTACTCCCTCCGTAC 59.932 44.000 0.00 0.00 38.13 3.67
216 3254 5.854157 ACGTGTATAGCAAAATGTTTCTCG 58.146 37.500 0.00 0.00 0.00 4.04
241 3279 8.386606 GGCGCATGATAAAATTGAAAAATGTTA 58.613 29.630 10.83 0.00 0.00 2.41
253 3291 5.106555 CCTTCTATTCGGCGCATGATAAAAT 60.107 40.000 10.83 0.00 0.00 1.82
257 3295 2.299013 ACCTTCTATTCGGCGCATGATA 59.701 45.455 10.83 2.61 0.00 2.15
262 3300 0.102481 GAGACCTTCTATTCGGCGCA 59.898 55.000 10.83 0.00 0.00 6.09
266 3304 5.068460 ACTGATCAAGAGACCTTCTATTCGG 59.932 44.000 0.00 0.00 34.14 4.30
288 3326 7.750229 TCACATCTTCTTTTCTTATGCAACT 57.250 32.000 0.00 0.00 0.00 3.16
298 3336 3.686726 ACGCCTGATCACATCTTCTTTTC 59.313 43.478 0.00 0.00 0.00 2.29
305 3343 0.817654 TTCGACGCCTGATCACATCT 59.182 50.000 0.00 0.00 0.00 2.90
306 3344 1.203928 CTTCGACGCCTGATCACATC 58.796 55.000 0.00 0.00 0.00 3.06
436 3476 1.022735 TAGCACTCTCGGTCGATTCC 58.977 55.000 0.00 0.00 0.00 3.01
448 3488 1.014564 GGACCAGCGTGTTAGCACTC 61.015 60.000 8.15 0.00 43.16 3.51
492 3538 2.751259 TCTTCATGCCAAGCAGTTCATC 59.249 45.455 0.00 0.00 43.65 2.92
543 3589 3.448093 TTGCCATGAACTTGGGTGATA 57.552 42.857 0.00 0.00 37.24 2.15
574 3620 2.125673 CGCCTTGTAGGTGGTCCG 60.126 66.667 0.00 0.00 42.09 4.79
593 3639 0.036952 ATGCGGTTGGAGTCTGAGTG 60.037 55.000 0.00 0.00 0.00 3.51
613 3659 6.408035 TGATTTGATCATTGGTTTTCCCATG 58.592 36.000 0.00 0.00 42.42 3.66
614 3660 6.441284 TCTGATTTGATCATTGGTTTTCCCAT 59.559 34.615 0.00 0.00 37.15 4.00
615 3661 5.779260 TCTGATTTGATCATTGGTTTTCCCA 59.221 36.000 0.00 0.00 38.79 4.37
616 3662 6.284891 TCTGATTTGATCATTGGTTTTCCC 57.715 37.500 0.00 0.00 38.85 3.97
617 3663 7.330208 CAGTTCTGATTTGATCATTGGTTTTCC 59.670 37.037 0.00 0.00 38.85 3.13
618 3664 8.084073 TCAGTTCTGATTTGATCATTGGTTTTC 58.916 33.333 0.00 0.00 38.85 2.29
678 3724 7.986562 TCTATATATATGCTGACTGACGTTCC 58.013 38.462 5.44 0.00 0.00 3.62
699 3745 8.365647 TCGTTGGTTCTTTAGTTCTTCTTCTAT 58.634 33.333 0.00 0.00 0.00 1.98
700 3746 7.719483 TCGTTGGTTCTTTAGTTCTTCTTCTA 58.281 34.615 0.00 0.00 0.00 2.10
701 3747 6.579865 TCGTTGGTTCTTTAGTTCTTCTTCT 58.420 36.000 0.00 0.00 0.00 2.85
702 3748 6.839820 TCGTTGGTTCTTTAGTTCTTCTTC 57.160 37.500 0.00 0.00 0.00 2.87
703 3749 7.470079 GTTTCGTTGGTTCTTTAGTTCTTCTT 58.530 34.615 0.00 0.00 0.00 2.52
725 3771 0.386731 GCTGCCGTTGTATTGCGTTT 60.387 50.000 0.00 0.00 0.00 3.60
806 3858 2.159099 TCGCTGGGATGCTTGTAGTTAG 60.159 50.000 0.00 0.00 0.00 2.34
816 3868 2.467826 GCTGAGTTCGCTGGGATGC 61.468 63.158 0.00 0.00 0.00 3.91
861 3923 1.867233 ACATTATTCGAGCATGGCGAC 59.133 47.619 0.00 0.00 37.52 5.19
883 3945 2.592861 GCGTCTGGATGGGGATGC 60.593 66.667 0.00 0.00 37.32 3.91
890 3952 1.043116 TAGGAGTGGGCGTCTGGATG 61.043 60.000 0.00 0.00 0.00 3.51
897 3959 4.417437 AGTGATAATATAGGAGTGGGCGT 58.583 43.478 0.00 0.00 0.00 5.68
900 3962 6.665680 AGCACTAGTGATAATATAGGAGTGGG 59.334 42.308 27.08 0.00 34.88 4.61
925 3987 1.053424 AAAGAGAACCGCACCAGGTA 58.947 50.000 0.00 0.00 45.21 3.08
1073 4135 1.680314 AAGTACCCGGAGTCCGTCC 60.680 63.158 28.98 13.77 46.80 4.79
1267 4329 1.683385 GAATTCCTTATGGCTGCCCAC 59.317 52.381 17.53 0.00 45.77 4.61
1383 4446 7.475771 TTGTTTTGAAAATATGAACACTGGC 57.524 32.000 0.00 0.00 30.71 4.85
1408 4475 5.804944 AGCTGAGATTGACAGTGCTATAT 57.195 39.130 0.00 0.00 37.64 0.86
1512 4579 1.004440 GGGAGTGCTCGCAACTTCT 60.004 57.895 10.76 0.00 41.53 2.85
1636 4703 0.745128 TGGTGTGTGGGAACGTTGAC 60.745 55.000 5.00 0.00 0.00 3.18
1654 4723 3.380479 TTCGACCTTTGTAGGACAGTG 57.620 47.619 0.00 0.00 45.05 3.66
1671 4740 2.880822 TTCGCTTCTTCTGCAATTCG 57.119 45.000 0.00 0.00 0.00 3.34
1738 4808 2.092267 TGTCTATTGCCTGTCCATGCAT 60.092 45.455 0.00 0.00 37.33 3.96
1749 4819 5.345702 TGTATGTTAGTCGTGTCTATTGCC 58.654 41.667 0.00 0.00 0.00 4.52
1818 4888 7.953710 CGTGGTAGTAACTTTATACAAAAGCAC 59.046 37.037 0.00 0.00 34.24 4.40
1836 4906 1.001760 ATGCTCTCCCCGTGGTAGT 59.998 57.895 0.00 0.00 0.00 2.73
1846 4916 2.808543 ACTTTTGTCGAACATGCTCTCC 59.191 45.455 0.00 0.00 0.00 3.71
1847 4917 4.059008 GACTTTTGTCGAACATGCTCTC 57.941 45.455 0.00 0.00 39.89 3.20
1862 4932 4.941873 CCTTTAGTTATCCGCCTGACTTTT 59.058 41.667 0.00 0.00 0.00 2.27
1892 4962 5.114081 TCAGATGCAGATAGTTGATGTGTG 58.886 41.667 0.00 0.00 31.33 3.82
1943 5013 8.314021 CACACTTGATATAGCTTGATATACCCA 58.686 37.037 0.00 0.00 0.00 4.51
1946 5016 9.914131 TGTCACACTTGATATAGCTTGATATAC 57.086 33.333 0.00 0.00 33.11 1.47
1957 5027 6.096987 GGAAGTCTCCTGTCACACTTGATATA 59.903 42.308 0.00 0.00 38.88 0.86
1968 5038 0.251386 AGAGCGGAAGTCTCCTGTCA 60.251 55.000 0.00 0.00 39.93 3.58
2039 5113 4.264253 TGCAATGCTACTCAACTGCTTAT 58.736 39.130 6.82 0.00 38.02 1.73
2118 5192 7.382218 GCTCAACAAAAACACAAATATGTAGCT 59.618 33.333 0.00 0.00 37.82 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.