Multiple sequence alignment - TraesCS3B01G266000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G266000 chr3B 100.000 7024 0 0 1 7024 426820955 426827978 0.000000e+00 12971.0
1 TraesCS3B01G266000 chr3B 82.731 747 79 26 1700 2431 733413430 733414141 2.780000e-173 619.0
2 TraesCS3B01G266000 chr3B 82.630 616 80 19 2233 2843 786115979 786115386 2.900000e-143 520.0
3 TraesCS3B01G266000 chr3B 85.676 377 53 1 1605 1980 780298108 780297732 5.110000e-106 396.0
4 TraesCS3B01G266000 chr3B 90.909 77 6 1 6948 7023 395942293 395942217 1.250000e-17 102.0
5 TraesCS3B01G266000 chr3B 82.114 123 17 5 6140 6259 364434917 364434797 4.480000e-17 100.0
6 TraesCS3B01G266000 chr3B 84.158 101 13 3 6150 6248 423806105 423806204 2.090000e-15 95.3
7 TraesCS3B01G266000 chr3B 73.762 202 48 5 6448 6647 704704375 704704177 2.720000e-09 75.0
8 TraesCS3B01G266000 chr3B 78.899 109 19 4 6821 6926 756312090 756311983 3.520000e-08 71.3
9 TraesCS3B01G266000 chr3D 96.008 2104 64 11 4058 6153 329445859 329447950 0.000000e+00 3402.0
10 TraesCS3B01G266000 chr3D 96.571 904 22 7 691 1590 329439395 329440293 0.000000e+00 1489.0
11 TraesCS3B01G266000 chr3D 97.147 771 19 3 2850 3620 329441197 329441964 0.000000e+00 1299.0
12 TraesCS3B01G266000 chr3D 83.276 1172 140 32 1682 2844 599363232 599364356 0.000000e+00 1027.0
13 TraesCS3B01G266000 chr3D 86.659 832 93 7 1606 2431 583190042 583189223 0.000000e+00 905.0
14 TraesCS3B01G266000 chr3D 88.996 727 46 17 6244 6962 329447950 329448650 0.000000e+00 869.0
15 TraesCS3B01G266000 chr3D 86.428 781 64 24 1897 2673 599351144 599351886 0.000000e+00 817.0
16 TraesCS3B01G266000 chr3D 85.327 811 90 18 1608 2400 583183526 583182727 0.000000e+00 811.0
17 TraesCS3B01G266000 chr3D 95.662 461 12 3 3617 4075 329442123 329442577 0.000000e+00 734.0
18 TraesCS3B01G266000 chr3D 86.103 331 15 9 2393 2701 446689578 446689899 1.890000e-85 327.0
19 TraesCS3B01G266000 chr3D 86.429 280 34 4 1711 1987 583280412 583280134 3.180000e-78 303.0
20 TraesCS3B01G266000 chr3D 83.333 300 17 7 2392 2667 26255080 26254790 5.440000e-61 246.0
21 TraesCS3B01G266000 chr3A 94.596 2091 66 23 4090 6153 444290941 444293011 0.000000e+00 3192.0
22 TraesCS3B01G266000 chr3A 95.672 1086 27 10 3002 4080 444289706 444290778 0.000000e+00 1727.0
23 TraesCS3B01G266000 chr3A 95.925 908 30 6 688 1590 444287050 444287955 0.000000e+00 1465.0
24 TraesCS3B01G266000 chr3A 85.850 735 46 21 6244 6962 444293011 444293703 0.000000e+00 728.0
25 TraesCS3B01G266000 chr3A 81.911 586 52 20 1 535 47273006 47272424 5.000000e-121 446.0
26 TraesCS3B01G266000 chr3A 83.218 435 59 8 1592 2023 519206143 519206566 3.070000e-103 387.0
27 TraesCS3B01G266000 chr3A 89.723 253 26 0 1610 1862 626033291 626033543 2.440000e-84 324.0
28 TraesCS3B01G266000 chr3A 96.970 165 5 0 2850 3014 444289157 444289321 1.930000e-70 278.0
29 TraesCS3B01G266000 chr3A 91.391 151 13 0 534 684 444284969 444285119 2.570000e-49 207.0
30 TraesCS3B01G266000 chr7D 90.389 1259 93 4 1602 2838 2221501 2222753 0.000000e+00 1629.0
31 TraesCS3B01G266000 chr7D 85.734 736 76 13 1700 2431 368806495 368807205 0.000000e+00 750.0
32 TraesCS3B01G266000 chr7D 83.133 415 41 22 129 520 105222085 105221677 1.120000e-92 351.0
33 TraesCS3B01G266000 chr7D 82.297 418 41 18 129 520 294423464 294423874 1.460000e-86 331.0
34 TraesCS3B01G266000 chr7D 86.854 213 22 3 1 207 294423298 294423510 4.240000e-57 233.0
35 TraesCS3B01G266000 chr7D 98.387 62 1 0 6963 7024 20568099 20568160 7.450000e-20 110.0
36 TraesCS3B01G266000 chr4D 85.610 959 82 27 1897 2845 401794817 401793905 0.000000e+00 955.0
37 TraesCS3B01G266000 chr4D 81.308 107 16 3 6149 6253 310628669 310628773 4.510000e-12 84.2
38 TraesCS3B01G266000 chr4D 81.373 102 16 3 6149 6248 43284104 43284004 5.840000e-11 80.5
39 TraesCS3B01G266000 chr5A 87.835 822 69 22 2026 2844 35831672 35830879 0.000000e+00 935.0
40 TraesCS3B01G266000 chr5A 80.769 104 16 4 6146 6246 641050345 641050447 2.100000e-10 78.7
41 TraesCS3B01G266000 chr5A 78.070 114 21 4 6141 6252 188988642 188988531 1.260000e-07 69.4
42 TraesCS3B01G266000 chr7A 86.253 822 96 9 1605 2425 492086121 492085316 0.000000e+00 876.0
43 TraesCS3B01G266000 chr7A 92.063 315 23 1 2530 2844 571677611 571677923 6.470000e-120 442.0
44 TraesCS3B01G266000 chr1A 85.783 830 76 24 1881 2707 566570012 566570802 0.000000e+00 841.0
45 TraesCS3B01G266000 chr1A 87.075 441 42 8 2392 2827 8154927 8154497 1.060000e-132 484.0
46 TraesCS3B01G266000 chr1A 86.797 409 37 11 140 535 14801828 14801424 2.330000e-119 440.0
47 TraesCS3B01G266000 chr1A 80.784 536 48 27 1 488 215944062 215944590 1.110000e-97 368.0
48 TraesCS3B01G266000 chr1A 89.516 124 6 2 1 118 14802011 14801889 4.390000e-32 150.0
49 TraesCS3B01G266000 chr1A 90.541 74 7 0 3123 3196 556139171 556139244 1.610000e-16 99.0
50 TraesCS3B01G266000 chr1D 87.421 477 28 7 2385 2839 42827720 42827254 2.900000e-143 520.0
51 TraesCS3B01G266000 chr1D 85.057 87 13 0 6551 6637 363057634 363057720 9.700000e-14 89.8
52 TraesCS3B01G266000 chr6B 85.053 475 39 11 2392 2844 681375795 681375331 8.310000e-124 455.0
53 TraesCS3B01G266000 chr6B 98.438 64 1 0 6961 7024 530791550 530791487 5.760000e-21 113.0
54 TraesCS3B01G266000 chr6B 80.952 105 15 5 6150 6251 121716593 121716491 2.100000e-10 78.7
55 TraesCS3B01G266000 chr5D 92.114 317 24 1 2526 2841 416229190 416229506 5.000000e-121 446.0
56 TraesCS3B01G266000 chr5D 84.421 475 28 10 2392 2844 115973898 115974348 6.510000e-115 425.0
57 TraesCS3B01G266000 chr5D 91.205 307 23 3 2522 2827 496060570 496060873 1.410000e-111 414.0
58 TraesCS3B01G266000 chr5D 96.491 57 2 0 2472 2528 416229114 416229170 2.090000e-15 95.3
59 TraesCS3B01G266000 chr6D 86.298 416 33 6 2419 2812 22101202 22101615 1.400000e-116 431.0
60 TraesCS3B01G266000 chr1B 92.230 296 23 0 1605 1900 578032512 578032217 3.030000e-113 420.0
61 TraesCS3B01G266000 chr1B 81.538 195 35 1 6455 6649 486300069 486300262 7.290000e-35 159.0
62 TraesCS3B01G266000 chr1B 98.387 62 1 0 6963 7024 366421647 366421586 7.450000e-20 110.0
63 TraesCS3B01G266000 chr1B 98.387 62 1 0 6963 7024 420866797 420866858 7.450000e-20 110.0
64 TraesCS3B01G266000 chr1B 98.387 62 1 0 6963 7024 454274985 454274924 7.450000e-20 110.0
65 TraesCS3B01G266000 chr1B 98.387 62 1 0 6963 7024 522134175 522134236 7.450000e-20 110.0
66 TraesCS3B01G266000 chr2B 85.049 408 41 13 129 520 757856918 757856515 1.420000e-106 398.0
67 TraesCS3B01G266000 chr2B 91.597 119 10 0 1 119 757857084 757856966 1.570000e-36 165.0
68 TraesCS3B01G266000 chr2B 85.965 114 10 6 6143 6252 664215161 664215272 4.450000e-22 117.0
69 TraesCS3B01G266000 chr2B 88.060 67 8 0 6147 6213 121678432 121678366 5.840000e-11 80.5
70 TraesCS3B01G266000 chr2B 80.000 110 17 5 6150 6256 705874275 705874382 7.560000e-10 76.8
71 TraesCS3B01G266000 chr2A 80.037 536 54 31 1 488 16891014 16890484 1.450000e-91 348.0
72 TraesCS3B01G266000 chr2A 87.736 212 21 2 1 207 501427792 501427581 7.040000e-60 243.0
73 TraesCS3B01G266000 chr2A 77.987 159 28 6 6445 6600 559070994 559071148 7.500000e-15 93.5
74 TraesCS3B01G266000 chr2A 94.737 57 3 0 6147 6203 78845865 78845809 9.700000e-14 89.8
75 TraesCS3B01G266000 chr2A 94.286 35 1 1 6142 6176 562689813 562689846 1.300000e-02 52.8
76 TraesCS3B01G266000 chr2D 83.654 312 20 3 2392 2681 1914158 1913856 1.500000e-66 265.0
77 TraesCS3B01G266000 chr2D 94.737 57 3 0 6147 6203 78563919 78563863 9.700000e-14 89.8
78 TraesCS3B01G266000 chr4B 98.413 63 1 0 6962 7024 381741991 381742053 2.070000e-20 111.0
79 TraesCS3B01G266000 chr5B 98.387 62 1 0 6963 7024 448712566 448712627 7.450000e-20 110.0
80 TraesCS3B01G266000 chr5B 82.828 99 14 3 6150 6246 638485378 638485475 1.260000e-12 86.1
81 TraesCS3B01G266000 chr5B 87.931 58 6 1 6814 6870 712865297 712865354 4.550000e-07 67.6
82 TraesCS3B01G266000 chrUn 78.899 109 19 4 6821 6926 40972658 40972765 3.520000e-08 71.3
83 TraesCS3B01G266000 chr7B 89.362 47 5 0 6824 6870 256241 256195 7.610000e-05 60.2
84 TraesCS3B01G266000 chr4A 92.683 41 3 0 6597 6637 91310408 91310448 7.610000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G266000 chr3B 426820955 426827978 7023 False 12971.000000 12971 100.000000 1 7024 1 chr3B.!!$F2 7023
1 TraesCS3B01G266000 chr3B 733413430 733414141 711 False 619.000000 619 82.731000 1700 2431 1 chr3B.!!$F3 731
2 TraesCS3B01G266000 chr3B 786115386 786115979 593 True 520.000000 520 82.630000 2233 2843 1 chr3B.!!$R6 610
3 TraesCS3B01G266000 chr3D 329439395 329448650 9255 False 1558.600000 3402 94.876800 691 6962 5 chr3D.!!$F4 6271
4 TraesCS3B01G266000 chr3D 599363232 599364356 1124 False 1027.000000 1027 83.276000 1682 2844 1 chr3D.!!$F3 1162
5 TraesCS3B01G266000 chr3D 583189223 583190042 819 True 905.000000 905 86.659000 1606 2431 1 chr3D.!!$R3 825
6 TraesCS3B01G266000 chr3D 599351144 599351886 742 False 817.000000 817 86.428000 1897 2673 1 chr3D.!!$F2 776
7 TraesCS3B01G266000 chr3D 583182727 583183526 799 True 811.000000 811 85.327000 1608 2400 1 chr3D.!!$R2 792
8 TraesCS3B01G266000 chr3A 444284969 444293703 8734 False 1266.166667 3192 93.400667 534 6962 6 chr3A.!!$F3 6428
9 TraesCS3B01G266000 chr3A 47272424 47273006 582 True 446.000000 446 81.911000 1 535 1 chr3A.!!$R1 534
10 TraesCS3B01G266000 chr7D 2221501 2222753 1252 False 1629.000000 1629 90.389000 1602 2838 1 chr7D.!!$F1 1236
11 TraesCS3B01G266000 chr7D 368806495 368807205 710 False 750.000000 750 85.734000 1700 2431 1 chr7D.!!$F3 731
12 TraesCS3B01G266000 chr7D 294423298 294423874 576 False 282.000000 331 84.575500 1 520 2 chr7D.!!$F4 519
13 TraesCS3B01G266000 chr4D 401793905 401794817 912 True 955.000000 955 85.610000 1897 2845 1 chr4D.!!$R2 948
14 TraesCS3B01G266000 chr5A 35830879 35831672 793 True 935.000000 935 87.835000 2026 2844 1 chr5A.!!$R1 818
15 TraesCS3B01G266000 chr7A 492085316 492086121 805 True 876.000000 876 86.253000 1605 2425 1 chr7A.!!$R1 820
16 TraesCS3B01G266000 chr1A 566570012 566570802 790 False 841.000000 841 85.783000 1881 2707 1 chr1A.!!$F3 826
17 TraesCS3B01G266000 chr1A 215944062 215944590 528 False 368.000000 368 80.784000 1 488 1 chr1A.!!$F1 487
18 TraesCS3B01G266000 chr1A 14801424 14802011 587 True 295.000000 440 88.156500 1 535 2 chr1A.!!$R2 534
19 TraesCS3B01G266000 chr2B 757856515 757857084 569 True 281.500000 398 88.323000 1 520 2 chr2B.!!$R2 519
20 TraesCS3B01G266000 chr2A 16890484 16891014 530 True 348.000000 348 80.037000 1 488 1 chr2A.!!$R1 487

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
574 647 0.028902 CGATCGCATGACAGGTCGTA 59.971 55.000 0.26 0.0 0.00 3.43 F
1291 3295 0.247460 CTGATTCACTCTCCCACGCA 59.753 55.000 0.00 0.0 0.00 5.24 F
1631 3694 0.733150 CGGTCTGACGCACTCTCATA 59.267 55.000 1.07 0.0 0.00 2.15 F
1992 4206 0.806102 CAGTCACGCGGATTCGGATT 60.806 55.000 12.47 0.0 36.79 3.01 F
3112 6066 0.104855 TCCGATCAAGCCATTCCTCG 59.895 55.000 0.00 0.0 0.00 4.63 F
3277 6231 2.044793 TGAGATGGAACCAGGGAGTT 57.955 50.000 0.00 0.0 0.00 3.01 F
3797 6915 3.655777 TCCGCCATATTTTATTCCCTCCT 59.344 43.478 0.00 0.0 0.00 3.69 F
5131 11727 0.687354 TTCCTGCTCCAAGTCCTGAC 59.313 55.000 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1992 4206 0.109723 CTCCCGGGTGAAAGTCCAAA 59.890 55.000 22.86 0.00 0.00 3.28 R
2592 4985 0.321653 GTGGCTCGTCAACATCCCTT 60.322 55.000 0.00 0.00 0.00 3.95 R
2862 5417 5.579119 GCTGATGCAAAATCATGATGAAACA 59.421 36.000 9.46 6.58 39.41 2.83 R
3658 6776 2.023673 TCTTTGCCATTATGAAGCCCG 58.976 47.619 0.00 0.00 0.00 6.13 R
4037 7161 1.843851 TGTCCTTGTCCTTGTCCTTGT 59.156 47.619 0.00 0.00 0.00 3.16 R
4189 10765 2.416747 TCCACGATCTTGCAACAGAAG 58.583 47.619 0.00 0.00 0.00 2.85 R
5490 12111 2.028203 TGAGGAACGCATCACTGATGAA 60.028 45.455 21.20 0.00 42.09 2.57 R
6962 13605 0.250814 AATTACCGCGTTCCCCAACA 60.251 50.000 4.92 0.00 32.14 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 3.771160 CTCGCTACCCTTGCCGGT 61.771 66.667 1.90 0.00 40.13 5.28
92 99 7.363431 CAATAGAAAAGGAAACTCACAAGGTC 58.637 38.462 0.00 0.00 42.68 3.85
129 147 3.508840 GCGGCGGTTCCTCCAATG 61.509 66.667 9.78 0.00 35.57 2.82
222 273 3.625897 CCCACGACCAGGACTGCA 61.626 66.667 0.00 0.00 0.00 4.41
225 276 4.008933 ACGACCAGGACTGCAGCC 62.009 66.667 15.27 16.08 0.00 4.85
226 277 4.007644 CGACCAGGACTGCAGCCA 62.008 66.667 23.46 0.00 0.00 4.75
285 346 3.557054 CGGTGAAATTTCTCAGGTCTGGA 60.557 47.826 18.64 0.00 0.00 3.86
286 347 4.006319 GGTGAAATTTCTCAGGTCTGGAG 58.994 47.826 18.64 0.00 0.00 3.86
287 348 4.263068 GGTGAAATTTCTCAGGTCTGGAGA 60.263 45.833 18.64 0.00 39.53 3.71
331 395 3.728373 GGGAGAATGGGGCGTGGT 61.728 66.667 0.00 0.00 0.00 4.16
335 399 2.270874 GAGAATGGGGCGTGGTGGAT 62.271 60.000 0.00 0.00 0.00 3.41
344 408 1.072332 CGTGGTGGATGTGGGTTCA 59.928 57.895 0.00 0.00 0.00 3.18
381 453 1.301401 CTTTCCGAACGTGGCTGGA 60.301 57.895 0.00 0.00 0.00 3.86
423 495 2.081787 TTGGAGGGAGGGTTGCACA 61.082 57.895 0.00 0.00 0.00 4.57
462 535 1.374252 GTCTCGTTGGATGCGTGGT 60.374 57.895 0.00 0.00 0.00 4.16
466 539 2.677003 CGTTGGATGCGTGGTGTCC 61.677 63.158 0.00 0.00 0.00 4.02
475 548 1.676635 CGTGGTGTCCTACGAGGGA 60.677 63.158 0.00 0.00 42.54 4.20
478 551 0.686441 TGGTGTCCTACGAGGGATGG 60.686 60.000 4.67 0.00 37.73 3.51
479 552 0.396695 GGTGTCCTACGAGGGATGGA 60.397 60.000 4.67 0.00 37.73 3.41
480 553 1.033574 GTGTCCTACGAGGGATGGAG 58.966 60.000 4.67 0.00 37.73 3.86
481 554 0.924090 TGTCCTACGAGGGATGGAGA 59.076 55.000 4.67 0.00 37.73 3.71
482 555 1.133761 TGTCCTACGAGGGATGGAGAG 60.134 57.143 4.67 0.00 37.73 3.20
483 556 0.478942 TCCTACGAGGGATGGAGAGG 59.521 60.000 0.00 0.00 35.59 3.69
484 557 0.478942 CCTACGAGGGATGGAGAGGA 59.521 60.000 0.00 0.00 0.00 3.71
485 558 1.546773 CCTACGAGGGATGGAGAGGAG 60.547 61.905 0.00 0.00 0.00 3.69
486 559 1.422024 CTACGAGGGATGGAGAGGAGA 59.578 57.143 0.00 0.00 0.00 3.71
487 560 0.856982 ACGAGGGATGGAGAGGAGAT 59.143 55.000 0.00 0.00 0.00 2.75
488 561 1.203001 ACGAGGGATGGAGAGGAGATC 60.203 57.143 0.00 0.00 0.00 2.75
489 562 1.075374 CGAGGGATGGAGAGGAGATCT 59.925 57.143 0.00 0.00 42.61 2.75
490 563 2.307392 CGAGGGATGGAGAGGAGATCTA 59.693 54.545 0.00 0.00 38.84 1.98
491 564 3.245087 CGAGGGATGGAGAGGAGATCTAA 60.245 52.174 0.00 0.00 38.84 2.10
492 565 4.086457 GAGGGATGGAGAGGAGATCTAAC 58.914 52.174 0.00 0.00 38.84 2.34
493 566 3.469006 AGGGATGGAGAGGAGATCTAACA 59.531 47.826 0.00 0.00 38.84 2.41
494 567 4.078336 AGGGATGGAGAGGAGATCTAACAA 60.078 45.833 0.00 0.00 38.84 2.83
495 568 4.656112 GGGATGGAGAGGAGATCTAACAAA 59.344 45.833 0.00 0.00 38.84 2.83
496 569 5.221621 GGGATGGAGAGGAGATCTAACAAAG 60.222 48.000 0.00 0.00 38.84 2.77
497 570 5.221621 GGATGGAGAGGAGATCTAACAAAGG 60.222 48.000 0.00 0.00 38.84 3.11
498 571 4.033709 TGGAGAGGAGATCTAACAAAGGG 58.966 47.826 0.00 0.00 38.84 3.95
499 572 4.264850 TGGAGAGGAGATCTAACAAAGGGA 60.265 45.833 0.00 0.00 38.84 4.20
500 573 4.904853 GGAGAGGAGATCTAACAAAGGGAT 59.095 45.833 0.00 0.00 38.84 3.85
501 574 5.221621 GGAGAGGAGATCTAACAAAGGGATG 60.222 48.000 0.00 0.00 38.84 3.51
502 575 5.284582 AGAGGAGATCTAACAAAGGGATGT 58.715 41.667 0.00 0.00 36.10 3.06
503 576 5.130145 AGAGGAGATCTAACAAAGGGATGTG 59.870 44.000 0.00 0.00 36.10 3.21
504 577 4.164988 AGGAGATCTAACAAAGGGATGTGG 59.835 45.833 0.00 0.00 32.81 4.17
505 578 4.080299 GGAGATCTAACAAAGGGATGTGGT 60.080 45.833 0.00 0.00 32.81 4.16
506 579 4.848357 AGATCTAACAAAGGGATGTGGTG 58.152 43.478 0.00 0.00 32.81 4.17
507 580 4.536090 AGATCTAACAAAGGGATGTGGTGA 59.464 41.667 0.00 0.00 32.81 4.02
508 581 4.715534 TCTAACAAAGGGATGTGGTGAA 57.284 40.909 0.00 0.00 32.81 3.18
509 582 4.394729 TCTAACAAAGGGATGTGGTGAAC 58.605 43.478 0.00 0.00 32.81 3.18
510 583 1.995376 ACAAAGGGATGTGGTGAACC 58.005 50.000 0.00 0.00 30.82 3.62
511 584 1.216678 ACAAAGGGATGTGGTGAACCA 59.783 47.619 0.00 0.00 45.30 3.67
522 595 2.059575 GTGAACCATCACGACGACG 58.940 57.895 5.58 5.58 45.94 5.12
523 596 0.386352 GTGAACCATCACGACGACGA 60.386 55.000 15.32 0.00 45.94 4.20
524 597 0.386352 TGAACCATCACGACGACGAC 60.386 55.000 15.32 0.00 42.66 4.34
525 598 0.386352 GAACCATCACGACGACGACA 60.386 55.000 15.32 0.00 42.66 4.35
526 599 0.386858 AACCATCACGACGACGACAG 60.387 55.000 15.32 3.66 42.66 3.51
527 600 1.514228 CCATCACGACGACGACAGG 60.514 63.158 15.32 6.38 42.66 4.00
528 601 1.209383 CATCACGACGACGACAGGT 59.791 57.895 15.32 0.00 42.66 4.00
529 602 0.386858 CATCACGACGACGACAGGTT 60.387 55.000 15.32 0.00 42.66 3.50
530 603 0.109873 ATCACGACGACGACAGGTTC 60.110 55.000 15.32 0.00 42.66 3.62
531 604 1.162181 TCACGACGACGACAGGTTCT 61.162 55.000 15.32 0.00 42.66 3.01
532 605 0.725118 CACGACGACGACAGGTTCTC 60.725 60.000 15.32 0.00 42.66 2.87
536 609 0.031721 ACGACGACAGGTTCTCCAAC 59.968 55.000 0.00 0.00 35.89 3.77
566 639 0.032678 ATCTCCACCGATCGCATGAC 59.967 55.000 10.32 0.00 0.00 3.06
574 647 0.028902 CGATCGCATGACAGGTCGTA 59.971 55.000 0.26 0.00 0.00 3.43
578 651 1.135489 TCGCATGACAGGTCGTAGTTC 60.135 52.381 0.00 0.00 0.00 3.01
588 661 1.132643 GGTCGTAGTTCGCTCTGTCAT 59.867 52.381 0.00 0.00 39.67 3.06
595 668 1.464997 GTTCGCTCTGTCATCAAACCC 59.535 52.381 0.00 0.00 0.00 4.11
601 674 3.616560 GCTCTGTCATCAAACCCTTCGTA 60.617 47.826 0.00 0.00 0.00 3.43
602 675 3.921677 TCTGTCATCAAACCCTTCGTAC 58.078 45.455 0.00 0.00 0.00 3.67
607 680 3.325425 TCATCAAACCCTTCGTACAGGAA 59.675 43.478 0.76 0.00 35.71 3.36
616 689 0.824109 TCGTACAGGAAGAGGCATGG 59.176 55.000 0.00 0.00 0.00 3.66
653 726 1.747206 GCAGCCTTATTCATGACGGGT 60.747 52.381 0.00 0.00 0.00 5.28
662 735 0.986019 TCATGACGGGTAGGGCCAAT 60.986 55.000 6.18 0.00 39.65 3.16
684 757 1.993370 GCACAGAACGGCAGTAACTAG 59.007 52.381 0.00 0.00 0.00 2.57
724 2724 4.538738 GACCACTACCTGGAGAATACTCT 58.461 47.826 0.00 0.00 43.95 3.24
936 2939 5.105675 CCTCCTCTTCTTAAGTCTTAACGCT 60.106 44.000 1.63 0.00 0.00 5.07
937 2940 5.710984 TCCTCTTCTTAAGTCTTAACGCTG 58.289 41.667 1.63 0.00 0.00 5.18
963 2966 0.326048 CTCCATCAGTCCACTCCCCT 60.326 60.000 0.00 0.00 0.00 4.79
964 2967 0.325671 TCCATCAGTCCACTCCCCTC 60.326 60.000 0.00 0.00 0.00 4.30
966 2969 1.279496 CATCAGTCCACTCCCCTCAA 58.721 55.000 0.00 0.00 0.00 3.02
970 2973 2.204090 TCCACTCCCCTCAACCCC 60.204 66.667 0.00 0.00 0.00 4.95
971 2974 3.339093 CCACTCCCCTCAACCCCC 61.339 72.222 0.00 0.00 0.00 5.40
1291 3295 0.247460 CTGATTCACTCTCCCACGCA 59.753 55.000 0.00 0.00 0.00 5.24
1379 3383 1.410517 GAGATGATCTTCGAGGCCACA 59.589 52.381 5.01 0.00 0.00 4.17
1631 3694 0.733150 CGGTCTGACGCACTCTCATA 59.267 55.000 1.07 0.00 0.00 2.15
1975 4189 2.507110 AAGTCATCGCCACCGTCCAG 62.507 60.000 0.00 0.00 35.54 3.86
1987 4201 2.158959 CGTCCAGTCACGCGGATTC 61.159 63.158 12.47 0.00 32.83 2.52
1988 4202 2.158959 GTCCAGTCACGCGGATTCG 61.159 63.158 12.47 0.00 39.81 3.34
1989 4203 2.885644 CCAGTCACGCGGATTCGG 60.886 66.667 12.47 0.62 36.79 4.30
1990 4204 2.180769 CAGTCACGCGGATTCGGA 59.819 61.111 12.47 0.00 36.79 4.55
1991 4205 1.226974 CAGTCACGCGGATTCGGAT 60.227 57.895 12.47 0.00 36.79 4.18
1992 4206 0.806102 CAGTCACGCGGATTCGGATT 60.806 55.000 12.47 0.00 36.79 3.01
2004 4218 4.671766 CGGATTCGGATTTTGGACTTTCAC 60.672 45.833 0.00 0.00 0.00 3.18
2065 4307 2.104281 ACCACACACCAACTTCTCCTAC 59.896 50.000 0.00 0.00 0.00 3.18
2097 4339 1.355971 CCCATGGAGTTAACGACACG 58.644 55.000 15.22 0.49 0.00 4.49
2147 4392 5.494706 AGGGATAACAGGAATTAACCTTGGA 59.505 40.000 0.00 0.00 38.32 3.53
2302 4669 4.100084 CAGCCACCATCAGCCCGA 62.100 66.667 0.00 0.00 0.00 5.14
2327 4698 0.863538 CAAGATCACCGACGCGAGAG 60.864 60.000 15.93 2.20 0.00 3.20
2436 4807 4.856801 CCATCGCCCCCGTCCAAG 62.857 72.222 0.00 0.00 35.54 3.61
2453 4824 1.068434 CAAGCTGCCTAGACTAGCCTC 59.932 57.143 3.76 0.00 38.18 4.70
2456 4827 1.752436 GCTGCCTAGACTAGCCTCTCA 60.752 57.143 3.76 0.00 0.00 3.27
2458 4829 1.324383 GCCTAGACTAGCCTCTCACC 58.676 60.000 3.76 0.00 0.00 4.02
2694 5087 2.586792 CCTCTCCCAGGGCGAAAG 59.413 66.667 0.00 0.00 38.91 2.62
2862 5417 7.110155 ACCGTTTACATGAAGATAACATTCCT 58.890 34.615 0.00 0.00 0.00 3.36
2923 5478 6.890663 TTCCGTTTAACCGTGTATTCATAG 57.109 37.500 0.00 0.00 0.00 2.23
2958 5513 3.696548 ACATAAGTGAGATCGTGCTCAGA 59.303 43.478 9.60 1.28 44.92 3.27
3112 6066 0.104855 TCCGATCAAGCCATTCCTCG 59.895 55.000 0.00 0.00 0.00 4.63
3208 6162 3.407698 TGCCACATGTGTATTCGTCTTT 58.592 40.909 23.79 0.00 0.00 2.52
3277 6231 2.044793 TGAGATGGAACCAGGGAGTT 57.955 50.000 0.00 0.00 0.00 3.01
3658 6776 4.670227 AACTGTTTTTCTCTAGATGCGC 57.330 40.909 0.00 0.00 0.00 6.09
3797 6915 3.655777 TCCGCCATATTTTATTCCCTCCT 59.344 43.478 0.00 0.00 0.00 3.69
3798 6916 4.105697 TCCGCCATATTTTATTCCCTCCTT 59.894 41.667 0.00 0.00 0.00 3.36
3912 7033 8.592105 TTGCATGGAAATAAAGAAAGAAGTTG 57.408 30.769 0.00 0.00 0.00 3.16
4189 10765 6.500684 TTGGAGATTTCATGTTGCTAAGTC 57.499 37.500 0.00 0.00 0.00 3.01
4216 10792 1.278985 TGCAAGATCGTGGATGTCCTT 59.721 47.619 10.74 0.00 36.82 3.36
4217 10793 2.290260 TGCAAGATCGTGGATGTCCTTT 60.290 45.455 10.74 0.00 36.82 3.11
4224 10800 3.815809 TCGTGGATGTCCTTTTGACTTT 58.184 40.909 0.09 0.00 44.75 2.66
4359 10941 4.897509 TCAGTATCTCATATTGCAGGGG 57.102 45.455 0.00 0.00 0.00 4.79
4647 11229 7.377766 TGGTAAGCTAAAGTTGCAGATTTAG 57.622 36.000 20.34 20.34 40.43 1.85
4653 11235 6.936900 AGCTAAAGTTGCAGATTTAGAACAGA 59.063 34.615 25.35 1.39 40.06 3.41
4658 11240 6.917533 AGTTGCAGATTTAGAACAGATTTGG 58.082 36.000 0.00 0.00 0.00 3.28
4659 11241 6.491403 AGTTGCAGATTTAGAACAGATTTGGT 59.509 34.615 0.00 0.00 0.00 3.67
4673 11255 9.383519 GAACAGATTTGGTTCTACATTAGATGA 57.616 33.333 0.00 0.00 41.05 2.92
4674 11256 9.739276 AACAGATTTGGTTCTACATTAGATGAA 57.261 29.630 0.00 0.00 34.22 2.57
4675 11257 9.911788 ACAGATTTGGTTCTACATTAGATGAAT 57.088 29.630 0.00 0.00 34.22 2.57
4703 11299 6.148948 TGGAAATTTTCACTTTGCTGTATCG 58.851 36.000 11.09 0.00 0.00 2.92
4979 11575 8.082242 ACTGAAAGCTATCATTTGTTTGTTACC 58.918 33.333 0.00 0.00 37.60 2.85
4997 11593 6.346096 TGTTACCTGTATGAAGAAGTATGGC 58.654 40.000 0.00 0.00 0.00 4.40
4998 11594 6.070481 TGTTACCTGTATGAAGAAGTATGGCA 60.070 38.462 0.00 0.00 0.00 4.92
5131 11727 0.687354 TTCCTGCTCCAAGTCCTGAC 59.313 55.000 0.00 0.00 0.00 3.51
5148 11744 7.805163 AGTCCTGACAATTATGAATACCATGA 58.195 34.615 0.00 0.00 36.71 3.07
5157 11753 9.293404 CAATTATGAATACCATGAGAGGTGAAT 57.707 33.333 0.00 0.00 43.14 2.57
5176 11772 6.089954 GGTGAATTTTGTTCTGAGCTAATTGC 59.910 38.462 8.83 0.00 43.29 3.56
5194 11790 4.511786 TTGCTTACATGGGGCATAGTTA 57.488 40.909 9.59 0.00 35.84 2.24
5299 11916 5.124645 GTCCTCAGTATAAGGAAGTCGAGA 58.875 45.833 0.00 0.00 44.40 4.04
5300 11917 5.237779 GTCCTCAGTATAAGGAAGTCGAGAG 59.762 48.000 0.00 0.00 44.40 3.20
5479 12100 2.159085 GCCTAACACTTCGTCAGCCTAT 60.159 50.000 0.00 0.00 0.00 2.57
5490 12111 0.937441 TCAGCCTATCCCCAGAGTCT 59.063 55.000 0.00 0.00 0.00 3.24
5538 12159 0.250234 CGAAGCCCCAGAATCTGTGA 59.750 55.000 9.63 0.00 0.00 3.58
5705 12326 5.049267 CGAGGATGGTAAAGAGAGTAGTAGC 60.049 48.000 0.00 0.00 0.00 3.58
5768 12389 1.743772 GCCGCAAAGATGAAGGAGCTA 60.744 52.381 0.00 0.00 0.00 3.32
5807 12428 2.264813 GCTAGCGTTAACGTGGATGAA 58.735 47.619 27.28 6.41 42.22 2.57
5813 12434 2.981805 CGTTAACGTGGATGAAGACGAA 59.018 45.455 19.75 0.00 38.94 3.85
5912 12533 1.144057 GCCACCGGAGATGTTCGAT 59.856 57.895 9.46 0.00 0.00 3.59
5927 12548 5.845985 TGTTCGATCTGTCAAAGATTGTC 57.154 39.130 0.00 0.00 46.12 3.18
6020 12641 0.032403 CAAACCGTACGTCTGACCCA 59.968 55.000 15.21 0.00 0.00 4.51
6054 12675 3.417069 TGTAACCCATTGTCTCCTGTG 57.583 47.619 0.00 0.00 0.00 3.66
6119 12740 8.827677 GCAAGTGTACATAATAAAGGTTCTAGG 58.172 37.037 0.00 0.00 0.00 3.02
6120 12741 9.326413 CAAGTGTACATAATAAAGGTTCTAGGG 57.674 37.037 0.00 0.00 0.00 3.53
6162 12783 7.193377 TGTTAAAAATGTACTTCCTTCGTCC 57.807 36.000 0.00 0.00 0.00 4.79
6163 12784 6.205270 TGTTAAAAATGTACTTCCTTCGTCCC 59.795 38.462 0.00 0.00 0.00 4.46
6164 12785 4.360951 AAAATGTACTTCCTTCGTCCCA 57.639 40.909 0.00 0.00 0.00 4.37
6165 12786 4.360951 AAATGTACTTCCTTCGTCCCAA 57.639 40.909 0.00 0.00 0.00 4.12
6166 12787 4.360951 AATGTACTTCCTTCGTCCCAAA 57.639 40.909 0.00 0.00 0.00 3.28
6167 12788 3.842007 TGTACTTCCTTCGTCCCAAAA 57.158 42.857 0.00 0.00 0.00 2.44
6168 12789 4.360951 TGTACTTCCTTCGTCCCAAAAT 57.639 40.909 0.00 0.00 0.00 1.82
6169 12790 5.486735 TGTACTTCCTTCGTCCCAAAATA 57.513 39.130 0.00 0.00 0.00 1.40
6170 12791 5.867330 TGTACTTCCTTCGTCCCAAAATAA 58.133 37.500 0.00 0.00 0.00 1.40
6171 12792 5.935789 TGTACTTCCTTCGTCCCAAAATAAG 59.064 40.000 0.00 0.00 0.00 1.73
6172 12793 4.981812 ACTTCCTTCGTCCCAAAATAAGT 58.018 39.130 0.00 0.00 0.00 2.24
6173 12794 4.760204 ACTTCCTTCGTCCCAAAATAAGTG 59.240 41.667 0.00 0.00 0.00 3.16
6174 12795 4.360951 TCCTTCGTCCCAAAATAAGTGT 57.639 40.909 0.00 0.00 0.00 3.55
6175 12796 4.320870 TCCTTCGTCCCAAAATAAGTGTC 58.679 43.478 0.00 0.00 0.00 3.67
6176 12797 3.124636 CCTTCGTCCCAAAATAAGTGTCG 59.875 47.826 0.00 0.00 0.00 4.35
6177 12798 2.070783 TCGTCCCAAAATAAGTGTCGC 58.929 47.619 0.00 0.00 0.00 5.19
6178 12799 2.073816 CGTCCCAAAATAAGTGTCGCT 58.926 47.619 0.00 0.00 0.00 4.93
6179 12800 2.159707 CGTCCCAAAATAAGTGTCGCTG 60.160 50.000 0.00 0.00 0.00 5.18
6180 12801 1.810151 TCCCAAAATAAGTGTCGCTGC 59.190 47.619 0.00 0.00 0.00 5.25
6181 12802 1.812571 CCCAAAATAAGTGTCGCTGCT 59.187 47.619 0.00 0.00 0.00 4.24
6182 12803 2.228822 CCCAAAATAAGTGTCGCTGCTT 59.771 45.455 0.00 0.00 0.00 3.91
6183 12804 3.305335 CCCAAAATAAGTGTCGCTGCTTT 60.305 43.478 0.00 0.00 0.00 3.51
6184 12805 4.083003 CCCAAAATAAGTGTCGCTGCTTTA 60.083 41.667 0.00 0.00 0.00 1.85
6185 12806 5.088739 CCAAAATAAGTGTCGCTGCTTTAG 58.911 41.667 0.00 0.00 0.00 1.85
6186 12807 5.334879 CCAAAATAAGTGTCGCTGCTTTAGT 60.335 40.000 0.00 0.00 0.00 2.24
6187 12808 6.128391 CCAAAATAAGTGTCGCTGCTTTAGTA 60.128 38.462 0.00 0.00 0.00 1.82
6188 12809 6.404712 AAATAAGTGTCGCTGCTTTAGTAC 57.595 37.500 0.00 0.00 0.00 2.73
6189 12810 3.380479 AAGTGTCGCTGCTTTAGTACA 57.620 42.857 0.00 0.00 0.00 2.90
6190 12811 3.380479 AGTGTCGCTGCTTTAGTACAA 57.620 42.857 0.00 0.00 0.00 2.41
6191 12812 3.724374 AGTGTCGCTGCTTTAGTACAAA 58.276 40.909 0.00 0.00 0.00 2.83
6192 12813 4.124238 AGTGTCGCTGCTTTAGTACAAAA 58.876 39.130 0.00 0.00 0.00 2.44
6193 12814 4.755123 AGTGTCGCTGCTTTAGTACAAAAT 59.245 37.500 0.00 0.00 0.00 1.82
6194 12815 5.238650 AGTGTCGCTGCTTTAGTACAAAATT 59.761 36.000 0.00 0.00 0.00 1.82
6195 12816 5.912955 GTGTCGCTGCTTTAGTACAAAATTT 59.087 36.000 0.00 0.00 0.00 1.82
6196 12817 5.912396 TGTCGCTGCTTTAGTACAAAATTTG 59.088 36.000 3.89 3.89 0.00 2.32
6198 12819 7.073265 GTCGCTGCTTTAGTACAAAATTTGTA 58.927 34.615 13.93 13.93 43.27 2.41
6234 12855 9.705290 ATTAATTTGTGTCACTTATTTTGGGAC 57.295 29.630 4.27 0.00 0.00 4.46
6235 12856 6.723298 ATTTGTGTCACTTATTTTGGGACA 57.277 33.333 4.27 0.00 36.24 4.02
6236 12857 5.766150 TTGTGTCACTTATTTTGGGACAG 57.234 39.130 4.27 0.00 42.39 3.51
6237 12858 5.042463 TGTGTCACTTATTTTGGGACAGA 57.958 39.130 4.27 0.00 42.39 3.41
6238 12859 5.063204 TGTGTCACTTATTTTGGGACAGAG 58.937 41.667 4.27 0.00 42.39 3.35
6239 12860 4.455877 GTGTCACTTATTTTGGGACAGAGG 59.544 45.833 0.00 0.00 42.39 3.69
6240 12861 4.010349 GTCACTTATTTTGGGACAGAGGG 58.990 47.826 0.00 0.00 42.39 4.30
6241 12862 3.913799 TCACTTATTTTGGGACAGAGGGA 59.086 43.478 0.00 0.00 42.39 4.20
6242 12863 4.019321 TCACTTATTTTGGGACAGAGGGAG 60.019 45.833 0.00 0.00 42.39 4.30
6243 12864 3.916989 ACTTATTTTGGGACAGAGGGAGT 59.083 43.478 0.00 0.00 42.39 3.85
6324 12945 8.932945 TCTCTAGAAACACACATGATGTTATC 57.067 34.615 16.77 15.32 40.64 1.75
6363 12984 1.066143 AGGTACACAGCTTTGGATCCG 60.066 52.381 7.39 0.00 0.00 4.18
6442 13063 1.831652 CTGGAGGCTTCCCGACTGTT 61.832 60.000 13.07 0.00 43.33 3.16
6446 13067 1.275573 GAGGCTTCCCGACTGTTTACT 59.724 52.381 0.00 0.00 35.76 2.24
6447 13068 2.494870 GAGGCTTCCCGACTGTTTACTA 59.505 50.000 0.00 0.00 35.76 1.82
6448 13069 2.233186 AGGCTTCCCGACTGTTTACTAC 59.767 50.000 0.00 0.00 35.76 2.73
6449 13070 2.233186 GGCTTCCCGACTGTTTACTACT 59.767 50.000 0.00 0.00 0.00 2.57
6450 13071 3.306571 GGCTTCCCGACTGTTTACTACTT 60.307 47.826 0.00 0.00 0.00 2.24
6451 13072 3.925299 GCTTCCCGACTGTTTACTACTTC 59.075 47.826 0.00 0.00 0.00 3.01
6452 13073 4.492611 CTTCCCGACTGTTTACTACTTCC 58.507 47.826 0.00 0.00 0.00 3.46
6453 13074 2.827921 TCCCGACTGTTTACTACTTCCC 59.172 50.000 0.00 0.00 0.00 3.97
6454 13075 2.416431 CCCGACTGTTTACTACTTCCCG 60.416 54.545 0.00 0.00 0.00 5.14
6455 13076 2.489329 CCGACTGTTTACTACTTCCCGA 59.511 50.000 0.00 0.00 0.00 5.14
6456 13077 3.496155 CGACTGTTTACTACTTCCCGAC 58.504 50.000 0.00 0.00 0.00 4.79
6457 13078 3.190118 CGACTGTTTACTACTTCCCGACT 59.810 47.826 0.00 0.00 0.00 4.18
6458 13079 4.483311 GACTGTTTACTACTTCCCGACTG 58.517 47.826 0.00 0.00 0.00 3.51
6459 13080 3.893813 ACTGTTTACTACTTCCCGACTGT 59.106 43.478 0.00 0.00 0.00 3.55
6463 13084 5.948162 TGTTTACTACTTCCCGACTGTCTAT 59.052 40.000 6.21 0.00 0.00 1.98
6488 13109 2.777960 AAGGTTGGCCTGGCTCCAA 61.778 57.895 19.68 12.34 46.33 3.53
6494 13115 2.436109 GCCTGGCTCCAACAAGGA 59.564 61.111 12.43 0.00 46.75 3.36
6535 13156 1.668294 CTTCGGCTCACTCCAGTGT 59.332 57.895 6.61 0.00 45.76 3.55
6544 13165 3.654414 CTCACTCCAGTGTTTGTAGTCC 58.346 50.000 6.61 0.00 45.76 3.85
6564 13198 2.353406 CCTCGTTAAGTGGTCCACGAAT 60.353 50.000 16.44 9.46 40.91 3.34
6607 13241 3.584406 TTGGTGTTATTTGGATTGCCG 57.416 42.857 0.00 0.00 36.79 5.69
6671 13306 5.886960 AAAATACCATCAAGACTGCAGTC 57.113 39.130 34.82 34.82 45.08 3.51
6691 13326 5.861251 CAGTCGGATGAGAATAGCAGTATTC 59.139 44.000 0.00 0.00 43.51 1.75
6742 13377 0.310543 GCAATGAACGCACTTGGACA 59.689 50.000 0.00 0.00 0.00 4.02
6743 13378 1.068333 GCAATGAACGCACTTGGACAT 60.068 47.619 0.00 0.00 0.00 3.06
6794 13432 9.011095 TCGAACCACAAAATTACCATAATGTAA 57.989 29.630 0.00 0.00 35.33 2.41
6932 13575 5.359576 TGCCACAAAGAACAGAGTTAATTGT 59.640 36.000 6.84 6.84 0.00 2.71
6941 13584 9.450807 AAGAACAGAGTTAATTGTTGAAAATCG 57.549 29.630 7.44 0.00 37.63 3.34
6946 13589 4.915085 AGTTAATTGTTGAAAATCGCCACG 59.085 37.500 0.00 0.00 0.00 4.94
6952 13595 3.064958 TGTTGAAAATCGCCACGTTTGTA 59.935 39.130 0.00 0.00 0.00 2.41
6962 13605 3.552273 CGCCACGTTTGTAGCTAGGATAT 60.552 47.826 0.00 0.00 29.85 1.63
6963 13606 3.741344 GCCACGTTTGTAGCTAGGATATG 59.259 47.826 0.00 0.00 29.42 1.78
6964 13607 4.739735 GCCACGTTTGTAGCTAGGATATGT 60.740 45.833 0.00 0.00 29.42 2.29
6965 13608 5.357257 CCACGTTTGTAGCTAGGATATGTT 58.643 41.667 0.00 0.00 0.00 2.71
6966 13609 5.234329 CCACGTTTGTAGCTAGGATATGTTG 59.766 44.000 0.00 0.00 0.00 3.33
6967 13610 5.234329 CACGTTTGTAGCTAGGATATGTTGG 59.766 44.000 0.00 0.00 0.00 3.77
6968 13611 4.750098 CGTTTGTAGCTAGGATATGTTGGG 59.250 45.833 0.00 0.00 0.00 4.12
6969 13612 4.974645 TTGTAGCTAGGATATGTTGGGG 57.025 45.455 0.00 0.00 0.00 4.96
6970 13613 4.207698 TGTAGCTAGGATATGTTGGGGA 57.792 45.455 0.00 0.00 0.00 4.81
6971 13614 4.562767 TGTAGCTAGGATATGTTGGGGAA 58.437 43.478 0.00 0.00 0.00 3.97
6972 13615 4.347000 TGTAGCTAGGATATGTTGGGGAAC 59.653 45.833 0.00 0.00 0.00 3.62
6973 13616 2.368875 AGCTAGGATATGTTGGGGAACG 59.631 50.000 0.00 0.00 0.00 3.95
6974 13617 2.767505 CTAGGATATGTTGGGGAACGC 58.232 52.381 0.00 0.00 43.69 4.84
6986 13629 3.846423 GGGGAACGCGGTAATTTTAAA 57.154 42.857 12.47 0.00 0.00 1.52
6987 13630 4.171663 GGGGAACGCGGTAATTTTAAAA 57.828 40.909 12.47 2.51 0.00 1.52
6988 13631 4.554292 GGGGAACGCGGTAATTTTAAAAA 58.446 39.130 12.47 0.00 0.00 1.94
7009 13652 6.757897 AAAAATTCCTACGATCATGCAAGA 57.242 33.333 0.00 0.00 0.00 3.02
7010 13653 6.949352 AAAATTCCTACGATCATGCAAGAT 57.051 33.333 3.65 3.65 0.00 2.40
7011 13654 6.551385 AAATTCCTACGATCATGCAAGATC 57.449 37.500 19.58 19.58 40.76 2.75
7012 13655 4.944619 TTCCTACGATCATGCAAGATCT 57.055 40.909 24.85 16.06 41.74 2.75
7013 13656 6.596309 ATTCCTACGATCATGCAAGATCTA 57.404 37.500 24.85 16.27 41.74 1.98
7014 13657 6.596309 TTCCTACGATCATGCAAGATCTAT 57.404 37.500 24.85 16.92 41.74 1.98
7015 13658 6.201226 TCCTACGATCATGCAAGATCTATC 57.799 41.667 24.85 5.44 41.74 2.08
7016 13659 5.948758 TCCTACGATCATGCAAGATCTATCT 59.051 40.000 24.85 10.53 41.74 1.98
7017 13660 7.112779 TCCTACGATCATGCAAGATCTATCTA 58.887 38.462 24.85 10.99 41.74 1.98
7018 13661 7.281999 TCCTACGATCATGCAAGATCTATCTAG 59.718 40.741 24.85 17.29 41.74 2.43
7019 13662 6.206395 ACGATCATGCAAGATCTATCTAGG 57.794 41.667 24.85 12.82 41.74 3.02
7020 13663 5.714333 ACGATCATGCAAGATCTATCTAGGT 59.286 40.000 24.85 13.36 41.74 3.08
7021 13664 6.035217 CGATCATGCAAGATCTATCTAGGTG 58.965 44.000 24.85 6.78 41.74 4.00
7022 13665 6.127786 CGATCATGCAAGATCTATCTAGGTGA 60.128 42.308 24.85 5.00 41.74 4.02
7023 13666 7.416551 CGATCATGCAAGATCTATCTAGGTGAT 60.417 40.741 24.85 9.41 41.74 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 4.951254 TCTATTGGTTGACTTTCACGTCA 58.049 39.130 0.00 0.00 41.82 4.35
92 99 1.148157 CGCCGCTCCACTACTCATTG 61.148 60.000 0.00 0.00 0.00 2.82
222 273 2.029073 CTCGTGGTCGTTGTGGCT 59.971 61.111 0.00 0.00 38.33 4.75
225 276 3.403057 CGCCTCGTGGTCGTTGTG 61.403 66.667 5.26 0.00 38.33 3.33
226 277 2.430382 ATTCGCCTCGTGGTCGTTGT 62.430 55.000 16.06 5.30 38.33 3.32
285 346 2.374184 CTCCCAATCACGTCTCTCTCT 58.626 52.381 0.00 0.00 0.00 3.10
286 347 1.202359 GCTCCCAATCACGTCTCTCTC 60.202 57.143 0.00 0.00 0.00 3.20
287 348 0.820871 GCTCCCAATCACGTCTCTCT 59.179 55.000 0.00 0.00 0.00 3.10
331 395 3.156293 CAAAGTCATGAACCCACATCCA 58.844 45.455 0.00 0.00 0.00 3.41
335 399 2.305928 CCACAAAGTCATGAACCCACA 58.694 47.619 0.00 0.00 0.00 4.17
344 408 5.478332 GGAAAGAAAGATCCCACAAAGTCAT 59.522 40.000 0.00 0.00 0.00 3.06
381 453 1.840650 CCCATCGATCCTCCAGGCT 60.841 63.158 0.00 0.00 34.44 4.58
395 467 3.350163 CCCTCCAACCCAGCCCAT 61.350 66.667 0.00 0.00 0.00 4.00
435 507 2.742372 CAACGAGACAAGGCCGGG 60.742 66.667 2.18 0.00 0.00 5.73
436 508 2.521958 ATCCAACGAGACAAGGCCGG 62.522 60.000 0.00 0.00 0.00 6.13
437 509 1.079127 ATCCAACGAGACAAGGCCG 60.079 57.895 0.00 0.00 0.00 6.13
445 518 1.374125 CACCACGCATCCAACGAGA 60.374 57.895 0.00 0.00 0.00 4.04
462 535 0.924090 TCTCCATCCCTCGTAGGACA 59.076 55.000 2.84 0.00 39.24 4.02
466 539 1.422024 TCTCCTCTCCATCCCTCGTAG 59.578 57.143 0.00 0.00 0.00 3.51
475 548 4.657969 CCCTTTGTTAGATCTCCTCTCCAT 59.342 45.833 0.00 0.00 35.28 3.41
478 551 5.365314 ACATCCCTTTGTTAGATCTCCTCTC 59.635 44.000 0.00 0.00 35.28 3.20
479 552 5.130145 CACATCCCTTTGTTAGATCTCCTCT 59.870 44.000 0.00 0.00 38.06 3.69
480 553 5.363939 CACATCCCTTTGTTAGATCTCCTC 58.636 45.833 0.00 0.00 0.00 3.71
481 554 4.164988 CCACATCCCTTTGTTAGATCTCCT 59.835 45.833 0.00 0.00 0.00 3.69
482 555 4.080299 ACCACATCCCTTTGTTAGATCTCC 60.080 45.833 0.00 0.00 0.00 3.71
483 556 4.878397 CACCACATCCCTTTGTTAGATCTC 59.122 45.833 0.00 0.00 0.00 2.75
484 557 4.536090 TCACCACATCCCTTTGTTAGATCT 59.464 41.667 0.00 0.00 0.00 2.75
485 558 4.843728 TCACCACATCCCTTTGTTAGATC 58.156 43.478 0.00 0.00 0.00 2.75
486 559 4.927267 TCACCACATCCCTTTGTTAGAT 57.073 40.909 0.00 0.00 0.00 1.98
487 560 4.394729 GTTCACCACATCCCTTTGTTAGA 58.605 43.478 0.00 0.00 0.00 2.10
488 561 3.506067 GGTTCACCACATCCCTTTGTTAG 59.494 47.826 0.00 0.00 35.64 2.34
489 562 3.117474 TGGTTCACCACATCCCTTTGTTA 60.117 43.478 0.00 0.00 42.01 2.41
490 563 2.316108 GGTTCACCACATCCCTTTGTT 58.684 47.619 0.00 0.00 35.64 2.83
491 564 1.216678 TGGTTCACCACATCCCTTTGT 59.783 47.619 0.00 0.00 42.01 2.83
492 565 1.993956 TGGTTCACCACATCCCTTTG 58.006 50.000 0.00 0.00 42.01 2.77
505 578 0.386352 GTCGTCGTCGTGATGGTTCA 60.386 55.000 1.33 0.00 38.33 3.18
506 579 0.386352 TGTCGTCGTCGTGATGGTTC 60.386 55.000 1.33 0.00 38.33 3.62
507 580 0.386858 CTGTCGTCGTCGTGATGGTT 60.387 55.000 1.33 0.00 38.33 3.67
508 581 1.209383 CTGTCGTCGTCGTGATGGT 59.791 57.895 1.33 0.00 38.33 3.55
509 582 1.514228 CCTGTCGTCGTCGTGATGG 60.514 63.158 1.33 0.00 38.33 3.51
510 583 0.386858 AACCTGTCGTCGTCGTGATG 60.387 55.000 1.33 0.00 38.33 3.07
511 584 0.109873 GAACCTGTCGTCGTCGTGAT 60.110 55.000 1.33 0.00 38.33 3.06
512 585 1.162181 AGAACCTGTCGTCGTCGTGA 61.162 55.000 1.33 0.00 38.33 4.35
513 586 0.725118 GAGAACCTGTCGTCGTCGTG 60.725 60.000 1.33 0.00 38.33 4.35
514 587 1.573436 GAGAACCTGTCGTCGTCGT 59.427 57.895 1.33 0.00 38.33 4.34
515 588 1.154263 GGAGAACCTGTCGTCGTCG 60.154 63.158 0.00 0.00 38.55 5.12
516 589 0.313043 TTGGAGAACCTGTCGTCGTC 59.687 55.000 0.00 0.00 37.04 4.20
517 590 0.031721 GTTGGAGAACCTGTCGTCGT 59.968 55.000 0.00 0.00 37.04 4.34
518 591 2.810486 GTTGGAGAACCTGTCGTCG 58.190 57.895 0.00 0.00 37.04 5.12
527 600 1.135199 TCGTATGAGCGGTTGGAGAAC 60.135 52.381 0.00 0.00 0.00 3.01
528 601 1.179152 TCGTATGAGCGGTTGGAGAA 58.821 50.000 0.00 0.00 0.00 2.87
529 602 1.337071 GATCGTATGAGCGGTTGGAGA 59.663 52.381 0.00 0.00 0.00 3.71
530 603 1.338337 AGATCGTATGAGCGGTTGGAG 59.662 52.381 0.00 0.00 35.10 3.86
531 604 1.337071 GAGATCGTATGAGCGGTTGGA 59.663 52.381 0.00 0.00 35.10 3.53
532 605 1.603172 GGAGATCGTATGAGCGGTTGG 60.603 57.143 0.00 0.00 35.10 3.77
536 609 0.039074 GGTGGAGATCGTATGAGCGG 60.039 60.000 0.00 0.00 35.10 5.52
566 639 0.522180 ACAGAGCGAACTACGACCTG 59.478 55.000 0.00 0.00 45.77 4.00
574 647 2.417719 GGTTTGATGACAGAGCGAACT 58.582 47.619 0.00 0.00 35.07 3.01
578 651 1.734465 GAAGGGTTTGATGACAGAGCG 59.266 52.381 0.00 0.00 30.91 5.03
588 661 2.967201 TCTTCCTGTACGAAGGGTTTGA 59.033 45.455 9.71 0.00 39.82 2.69
595 668 2.544685 CATGCCTCTTCCTGTACGAAG 58.455 52.381 4.60 4.60 40.59 3.79
601 674 1.566298 GGTCCCATGCCTCTTCCTGT 61.566 60.000 0.00 0.00 0.00 4.00
602 675 1.225704 GGTCCCATGCCTCTTCCTG 59.774 63.158 0.00 0.00 0.00 3.86
616 689 3.036084 CGGTCATATGCGCGGTCC 61.036 66.667 8.83 0.00 0.00 4.46
636 709 2.550208 CCCTACCCGTCATGAATAAGGC 60.550 54.545 0.00 0.00 0.00 4.35
653 726 1.544724 GTTCTGTGCAATTGGCCCTA 58.455 50.000 7.72 0.00 43.89 3.53
662 735 0.941542 GTTACTGCCGTTCTGTGCAA 59.058 50.000 0.00 0.00 36.98 4.08
684 757 2.030562 CACCGGTGAGTGTGTCCC 59.969 66.667 31.31 0.00 32.89 4.46
936 2939 1.690633 GACTGATGGAGGGAGGGCA 60.691 63.158 0.00 0.00 0.00 5.36
937 2940 2.447714 GGACTGATGGAGGGAGGGC 61.448 68.421 0.00 0.00 0.00 5.19
970 2973 2.041405 GTGGAGGAGGAGGAGGGG 60.041 72.222 0.00 0.00 0.00 4.79
971 2974 2.041405 GGTGGAGGAGGAGGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
974 2977 3.539593 TTGCGGTGGAGGAGGAGGA 62.540 63.158 0.00 0.00 0.00 3.71
976 2979 2.266055 GTTGCGGTGGAGGAGGAG 59.734 66.667 0.00 0.00 0.00 3.69
977 2980 3.691342 CGTTGCGGTGGAGGAGGA 61.691 66.667 0.00 0.00 0.00 3.71
1188 3191 1.675714 GCCATGTCGAACCTGATCACA 60.676 52.381 0.00 0.00 0.00 3.58
1192 3195 1.153369 CGGCCATGTCGAACCTGAT 60.153 57.895 2.24 0.00 29.41 2.90
1291 3295 0.172803 AGAAGCGCGACCGAATTAGT 59.827 50.000 12.10 0.00 36.29 2.24
1345 3349 4.518590 AGATCATCTCATCGGACTGTAGTG 59.481 45.833 0.00 0.00 0.00 2.74
1379 3383 2.415010 CTGCTAGGATCGCGCACT 59.585 61.111 8.75 1.16 0.00 4.40
1595 3658 4.025401 GGTTTGTGCACCGCCTCG 62.025 66.667 15.69 0.00 0.00 4.63
1602 3665 1.647084 GTCAGACCGGTTTGTGCAC 59.353 57.895 23.20 10.75 0.00 4.57
1631 3694 2.567169 TGAAAGATGATGGTGACGACCT 59.433 45.455 0.00 0.00 43.58 3.85
1975 4189 0.725117 AAAATCCGAATCCGCGTGAC 59.275 50.000 4.92 0.00 0.00 3.67
1987 4201 1.199097 CGGGTGAAAGTCCAAAATCCG 59.801 52.381 0.00 0.00 0.00 4.18
1988 4202 1.544246 CCGGGTGAAAGTCCAAAATCC 59.456 52.381 0.00 0.00 0.00 3.01
1989 4203 1.544246 CCCGGGTGAAAGTCCAAAATC 59.456 52.381 14.18 0.00 0.00 2.17
1990 4204 1.146152 TCCCGGGTGAAAGTCCAAAAT 59.854 47.619 22.86 0.00 0.00 1.82
1991 4205 0.551879 TCCCGGGTGAAAGTCCAAAA 59.448 50.000 22.86 0.00 0.00 2.44
1992 4206 0.109723 CTCCCGGGTGAAAGTCCAAA 59.890 55.000 22.86 0.00 0.00 3.28
2087 4329 2.431260 GGCGCTCCGTGTCGTTAA 60.431 61.111 7.64 0.00 0.00 2.01
2147 4392 1.383248 CCACCCCCTCTTCTCCGAT 60.383 63.158 0.00 0.00 0.00 4.18
2302 4669 1.469940 GCGTCGGTGATCTTGTCTCAT 60.470 52.381 0.00 0.00 0.00 2.90
2427 4798 2.187946 CTAGGCAGCTTGGACGGG 59.812 66.667 0.00 0.00 0.00 5.28
2592 4985 0.321653 GTGGCTCGTCAACATCCCTT 60.322 55.000 0.00 0.00 0.00 3.95
2844 5241 8.585471 ATGAAACAGGAATGTTATCTTCATGT 57.415 30.769 5.62 0.00 46.21 3.21
2845 5242 8.680001 TGATGAAACAGGAATGTTATCTTCATG 58.320 33.333 9.54 0.00 39.58 3.07
2846 5243 8.812513 TGATGAAACAGGAATGTTATCTTCAT 57.187 30.769 5.97 5.97 31.88 2.57
2847 5244 8.680001 CATGATGAAACAGGAATGTTATCTTCA 58.320 33.333 15.44 15.44 33.50 3.02
2848 5245 8.896744 TCATGATGAAACAGGAATGTTATCTTC 58.103 33.333 0.00 4.14 0.00 2.87
2862 5417 5.579119 GCTGATGCAAAATCATGATGAAACA 59.421 36.000 9.46 6.58 39.41 2.83
2923 5478 6.902341 TCTCACTTATGTCAGCAAATCAAAC 58.098 36.000 0.00 0.00 0.00 2.93
2958 5513 8.606830 AGAGGGAAAATATACTTCAGAGTTGTT 58.393 33.333 1.19 0.00 37.33 2.83
3112 6066 8.918658 TCAAATGTCGTACTCAGTTATTTACAC 58.081 33.333 0.00 0.00 0.00 2.90
3415 6370 5.924475 AGAAAACACGAAATTGATCGACT 57.076 34.783 6.54 0.00 45.48 4.18
3658 6776 2.023673 TCTTTGCCATTATGAAGCCCG 58.976 47.619 0.00 0.00 0.00 6.13
3912 7033 5.578157 TTAGCTTAGGATGGTATTTCCCC 57.422 43.478 0.00 0.00 33.45 4.81
4037 7161 1.843851 TGTCCTTGTCCTTGTCCTTGT 59.156 47.619 0.00 0.00 0.00 3.16
4038 7162 2.638480 TGTCCTTGTCCTTGTCCTTG 57.362 50.000 0.00 0.00 0.00 3.61
4039 7163 2.443255 ACATGTCCTTGTCCTTGTCCTT 59.557 45.455 0.00 0.00 0.00 3.36
4040 7164 2.039084 GACATGTCCTTGTCCTTGTCCT 59.961 50.000 15.31 0.00 40.11 3.85
4041 7165 2.427506 GACATGTCCTTGTCCTTGTCC 58.572 52.381 15.31 0.00 40.11 4.02
4042 7166 2.069273 CGACATGTCCTTGTCCTTGTC 58.931 52.381 20.03 0.00 42.46 3.18
4101 10677 2.441001 CCAGAAGGGAATGAGGCACTAT 59.559 50.000 0.00 0.00 37.74 2.12
4189 10765 2.416747 TCCACGATCTTGCAACAGAAG 58.583 47.619 0.00 0.00 0.00 2.85
4233 10809 7.757624 GTGGTGTTAAATCTCAAACAAACAGAA 59.242 33.333 0.00 0.00 37.35 3.02
4359 10941 3.059120 CACGCAGACATGATGGATCATTC 60.059 47.826 0.00 2.61 44.70 2.67
4500 11082 5.887754 AGAAATAGCAAGAGTAAACCCCAA 58.112 37.500 0.00 0.00 0.00 4.12
4647 11229 9.383519 TCATCTAATGTAGAACCAAATCTGTTC 57.616 33.333 0.00 0.00 41.89 3.18
4671 11253 9.558396 AGCAAAGTGAAAATTTCCAATTATTCA 57.442 25.926 3.00 0.00 27.89 2.57
4672 11254 9.815936 CAGCAAAGTGAAAATTTCCAATTATTC 57.184 29.630 3.00 0.00 27.89 1.75
4673 11255 9.341078 ACAGCAAAGTGAAAATTTCCAATTATT 57.659 25.926 3.00 0.00 27.89 1.40
4674 11256 8.907222 ACAGCAAAGTGAAAATTTCCAATTAT 57.093 26.923 3.00 0.00 27.89 1.28
4675 11257 9.995003 ATACAGCAAAGTGAAAATTTCCAATTA 57.005 25.926 3.00 0.00 27.89 1.40
4676 11258 8.907222 ATACAGCAAAGTGAAAATTTCCAATT 57.093 26.923 3.00 0.00 27.89 2.32
4677 11259 7.329226 CGATACAGCAAAGTGAAAATTTCCAAT 59.671 33.333 3.00 0.00 27.89 3.16
4678 11260 6.640499 CGATACAGCAAAGTGAAAATTTCCAA 59.360 34.615 3.00 0.00 27.89 3.53
4679 11261 6.016693 TCGATACAGCAAAGTGAAAATTTCCA 60.017 34.615 3.00 0.00 27.89 3.53
4680 11262 6.305638 GTCGATACAGCAAAGTGAAAATTTCC 59.694 38.462 3.00 0.00 27.89 3.13
4681 11263 7.078228 AGTCGATACAGCAAAGTGAAAATTTC 58.922 34.615 0.00 0.00 27.89 2.17
4682 11264 6.970484 AGTCGATACAGCAAAGTGAAAATTT 58.030 32.000 0.00 0.00 32.39 1.82
4683 11265 6.560253 AGTCGATACAGCAAAGTGAAAATT 57.440 33.333 0.00 0.00 0.00 1.82
4687 11283 7.667043 AATTAAGTCGATACAGCAAAGTGAA 57.333 32.000 0.00 0.00 0.00 3.18
4703 11299 6.736853 GCATCGACACAACTGTAAATTAAGTC 59.263 38.462 0.00 0.00 0.00 3.01
4979 11575 6.344500 AGTTCTGCCATACTTCTTCATACAG 58.656 40.000 0.00 0.00 0.00 2.74
4997 11593 8.779354 AGCTTAATAAGTTAACTGGAGTTCTG 57.221 34.615 9.34 0.00 39.31 3.02
4998 11594 9.438228 GAAGCTTAATAAGTTAACTGGAGTTCT 57.562 33.333 9.34 0.00 39.31 3.01
5131 11727 8.681486 TTCACCTCTCATGGTATTCATAATTG 57.319 34.615 0.00 0.00 38.45 2.32
5148 11744 4.723309 AGCTCAGAACAAAATTCACCTCT 58.277 39.130 0.00 0.00 0.00 3.69
5176 11772 6.420913 ACTAGTAACTATGCCCCATGTAAG 57.579 41.667 0.00 0.00 0.00 2.34
5181 11777 6.157994 TGAAGAAACTAGTAACTATGCCCCAT 59.842 38.462 0.00 0.00 0.00 4.00
5212 11829 5.870706 TCACACATACACCCTAACAATTGA 58.129 37.500 13.59 0.00 0.00 2.57
5269 11886 4.412843 TCCTTATACTGAGGACACACACA 58.587 43.478 0.00 0.00 38.37 3.72
5271 11888 5.084519 ACTTCCTTATACTGAGGACACACA 58.915 41.667 0.00 0.00 42.82 3.72
5385 12006 3.311966 GAAGCCAATTCTGAGCAAACAC 58.688 45.455 0.00 0.00 34.86 3.32
5479 12100 2.182827 CACTGATGAAGACTCTGGGGA 58.817 52.381 0.00 0.00 0.00 4.81
5490 12111 2.028203 TGAGGAACGCATCACTGATGAA 60.028 45.455 21.20 0.00 42.09 2.57
5538 12159 6.581388 TGAGGTCAGAGATAAAATGGGATT 57.419 37.500 0.00 0.00 0.00 3.01
5634 12255 4.134563 GTTATCCTTGCCGATGTGGTAAT 58.865 43.478 0.00 0.00 41.87 1.89
5807 12428 1.162181 TGGACACGTCGACTTCGTCT 61.162 55.000 20.89 2.45 39.55 4.18
5813 12434 0.959553 AACTCATGGACACGTCGACT 59.040 50.000 14.70 0.00 0.00 4.18
5912 12533 2.224281 ACCGCAGACAATCTTTGACAGA 60.224 45.455 0.00 0.00 35.33 3.41
5927 12548 5.277490 CCTTGAATCAATGTATGTACCGCAG 60.277 44.000 0.00 0.00 0.00 5.18
6020 12641 5.387113 TGGGTTACAAATATGCTCCTCAT 57.613 39.130 0.00 0.00 39.17 2.90
6054 12675 4.770795 ACACCTACAGATACAAGAATGCC 58.229 43.478 0.00 0.00 0.00 4.40
6153 12774 4.320870 GACACTTATTTTGGGACGAAGGA 58.679 43.478 0.00 0.00 0.00 3.36
6154 12775 3.124636 CGACACTTATTTTGGGACGAAGG 59.875 47.826 0.00 0.00 0.00 3.46
6155 12776 3.424433 GCGACACTTATTTTGGGACGAAG 60.424 47.826 0.00 0.00 0.00 3.79
6156 12777 2.481185 GCGACACTTATTTTGGGACGAA 59.519 45.455 0.00 0.00 0.00 3.85
6157 12778 2.070783 GCGACACTTATTTTGGGACGA 58.929 47.619 0.00 0.00 0.00 4.20
6158 12779 2.073816 AGCGACACTTATTTTGGGACG 58.926 47.619 0.00 0.00 0.00 4.79
6159 12780 2.414161 GCAGCGACACTTATTTTGGGAC 60.414 50.000 0.00 0.00 0.00 4.46
6160 12781 1.810151 GCAGCGACACTTATTTTGGGA 59.190 47.619 0.00 0.00 0.00 4.37
6161 12782 1.812571 AGCAGCGACACTTATTTTGGG 59.187 47.619 0.00 0.00 0.00 4.12
6162 12783 3.559238 AAGCAGCGACACTTATTTTGG 57.441 42.857 0.00 0.00 0.00 3.28
6163 12784 5.689819 ACTAAAGCAGCGACACTTATTTTG 58.310 37.500 0.00 0.00 0.00 2.44
6164 12785 5.941948 ACTAAAGCAGCGACACTTATTTT 57.058 34.783 0.00 0.00 0.00 1.82
6165 12786 5.929992 TGTACTAAAGCAGCGACACTTATTT 59.070 36.000 0.00 0.00 0.00 1.40
6166 12787 5.475719 TGTACTAAAGCAGCGACACTTATT 58.524 37.500 0.00 0.00 0.00 1.40
6167 12788 5.068234 TGTACTAAAGCAGCGACACTTAT 57.932 39.130 0.00 0.00 0.00 1.73
6168 12789 4.508461 TGTACTAAAGCAGCGACACTTA 57.492 40.909 0.00 0.00 0.00 2.24
6169 12790 3.380479 TGTACTAAAGCAGCGACACTT 57.620 42.857 0.00 0.00 0.00 3.16
6170 12791 3.380479 TTGTACTAAAGCAGCGACACT 57.620 42.857 0.00 0.00 0.00 3.55
6171 12792 4.461992 TTTTGTACTAAAGCAGCGACAC 57.538 40.909 0.00 0.00 0.00 3.67
6172 12793 5.682943 AATTTTGTACTAAAGCAGCGACA 57.317 34.783 8.41 0.00 0.00 4.35
6173 12794 5.912955 ACAAATTTTGTACTAAAGCAGCGAC 59.087 36.000 12.98 0.00 43.27 5.19
6174 12795 6.067263 ACAAATTTTGTACTAAAGCAGCGA 57.933 33.333 12.98 0.00 43.27 4.93
6208 12829 9.705290 GTCCCAAAATAAGTGACACAAATTAAT 57.295 29.630 8.59 0.00 0.00 1.40
6209 12830 8.696374 TGTCCCAAAATAAGTGACACAAATTAA 58.304 29.630 8.59 0.00 31.45 1.40
6210 12831 8.239038 TGTCCCAAAATAAGTGACACAAATTA 57.761 30.769 8.59 0.00 31.45 1.40
6211 12832 7.069331 TCTGTCCCAAAATAAGTGACACAAATT 59.931 33.333 8.59 4.10 32.87 1.82
6212 12833 6.549364 TCTGTCCCAAAATAAGTGACACAAAT 59.451 34.615 8.59 0.00 32.87 2.32
6213 12834 5.888724 TCTGTCCCAAAATAAGTGACACAAA 59.111 36.000 8.59 0.00 32.87 2.83
6214 12835 5.441500 TCTGTCCCAAAATAAGTGACACAA 58.558 37.500 8.59 0.00 32.87 3.33
6215 12836 5.042463 TCTGTCCCAAAATAAGTGACACA 57.958 39.130 8.59 0.00 32.87 3.72
6216 12837 4.455877 CCTCTGTCCCAAAATAAGTGACAC 59.544 45.833 0.00 0.00 32.87 3.67
6217 12838 4.506625 CCCTCTGTCCCAAAATAAGTGACA 60.507 45.833 0.00 0.00 34.95 3.58
6218 12839 4.010349 CCCTCTGTCCCAAAATAAGTGAC 58.990 47.826 0.00 0.00 0.00 3.67
6219 12840 3.913799 TCCCTCTGTCCCAAAATAAGTGA 59.086 43.478 0.00 0.00 0.00 3.41
6220 12841 4.263506 ACTCCCTCTGTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
6221 12842 3.916989 ACTCCCTCTGTCCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
6222 12843 4.576330 ACTCCCTCTGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
6223 12844 5.098663 ACTACTCCCTCTGTCCCAAAATAA 58.901 41.667 0.00 0.00 0.00 1.40
6224 12845 4.695606 ACTACTCCCTCTGTCCCAAAATA 58.304 43.478 0.00 0.00 0.00 1.40
6225 12846 3.532102 ACTACTCCCTCTGTCCCAAAAT 58.468 45.455 0.00 0.00 0.00 1.82
6226 12847 2.986050 ACTACTCCCTCTGTCCCAAAA 58.014 47.619 0.00 0.00 0.00 2.44
6227 12848 2.715763 ACTACTCCCTCTGTCCCAAA 57.284 50.000 0.00 0.00 0.00 3.28
6228 12849 5.681494 ATATACTACTCCCTCTGTCCCAA 57.319 43.478 0.00 0.00 0.00 4.12
6229 12850 5.681494 AATATACTACTCCCTCTGTCCCA 57.319 43.478 0.00 0.00 0.00 4.37
6230 12851 6.550163 TGTAATATACTACTCCCTCTGTCCC 58.450 44.000 0.00 0.00 0.00 4.46
6231 12852 9.750783 TTATGTAATATACTACTCCCTCTGTCC 57.249 37.037 0.00 0.00 0.00 4.02
6319 12940 5.356751 TGCAATGGTTGTGAGTATGGATAAC 59.643 40.000 0.00 0.00 0.00 1.89
6324 12945 2.424601 CCTGCAATGGTTGTGAGTATGG 59.575 50.000 0.00 0.00 0.00 2.74
6363 12984 9.620660 ACTTTGTAATTTAATTTCGTGGATCAC 57.379 29.630 0.00 0.00 0.00 3.06
6442 13063 7.341805 AGTAATAGACAGTCGGGAAGTAGTAA 58.658 38.462 0.00 0.00 0.00 2.24
6446 13067 6.653020 TGTAGTAATAGACAGTCGGGAAGTA 58.347 40.000 0.00 0.00 0.00 2.24
6447 13068 5.503927 TGTAGTAATAGACAGTCGGGAAGT 58.496 41.667 0.00 0.00 0.00 3.01
6448 13069 6.446781 TTGTAGTAATAGACAGTCGGGAAG 57.553 41.667 0.00 0.00 0.00 3.46
6449 13070 5.359009 CCTTGTAGTAATAGACAGTCGGGAA 59.641 44.000 0.00 0.00 0.00 3.97
6450 13071 4.885907 CCTTGTAGTAATAGACAGTCGGGA 59.114 45.833 0.00 0.00 0.00 5.14
6451 13072 4.643784 ACCTTGTAGTAATAGACAGTCGGG 59.356 45.833 0.00 0.00 0.00 5.14
6452 13073 5.831702 ACCTTGTAGTAATAGACAGTCGG 57.168 43.478 0.00 0.00 0.00 4.79
6453 13074 6.034591 CCAACCTTGTAGTAATAGACAGTCG 58.965 44.000 0.00 0.00 0.00 4.18
6454 13075 5.811100 GCCAACCTTGTAGTAATAGACAGTC 59.189 44.000 0.00 0.00 0.00 3.51
6455 13076 5.338137 GGCCAACCTTGTAGTAATAGACAGT 60.338 44.000 0.00 0.00 0.00 3.55
6456 13077 5.116882 GGCCAACCTTGTAGTAATAGACAG 58.883 45.833 0.00 0.00 0.00 3.51
6457 13078 5.093849 GGCCAACCTTGTAGTAATAGACA 57.906 43.478 0.00 0.00 0.00 3.41
6488 13109 1.285962 CCATCATCACCCCTTCCTTGT 59.714 52.381 0.00 0.00 0.00 3.16
6494 13115 2.308722 ACCGCCATCATCACCCCTT 61.309 57.895 0.00 0.00 0.00 3.95
6535 13156 4.262164 GGACCACTTAACGAGGACTACAAA 60.262 45.833 0.00 0.00 0.00 2.83
6544 13165 2.427232 TTCGTGGACCACTTAACGAG 57.573 50.000 22.14 5.14 44.85 4.18
6595 13229 4.533919 TTTCAATCACGGCAATCCAAAT 57.466 36.364 0.00 0.00 0.00 2.32
6646 13281 5.536161 ACTGCAGTCTTGATGGTATTTTTGT 59.464 36.000 15.25 0.00 0.00 2.83
6671 13306 7.516481 CAATTGAATACTGCTATTCTCATCCG 58.484 38.462 0.00 0.00 39.34 4.18
6672 13307 7.303998 GCAATTGAATACTGCTATTCTCATCC 58.696 38.462 10.34 0.00 39.34 3.51
6677 13312 7.609532 GGATAGGCAATTGAATACTGCTATTCT 59.390 37.037 10.34 0.00 39.34 2.40
6719 13354 1.200716 CCAAGTGCGTTCATTGCTCAT 59.799 47.619 0.00 0.00 0.00 2.90
6742 13377 4.080129 ACTTGCACTACAGAATCATCCCAT 60.080 41.667 0.00 0.00 0.00 4.00
6743 13378 3.264193 ACTTGCACTACAGAATCATCCCA 59.736 43.478 0.00 0.00 0.00 4.37
6822 13460 6.825284 TGTTATTGTGTCATGTTGCTTTTG 57.175 33.333 0.00 0.00 0.00 2.44
6932 13575 2.853731 ACAAACGTGGCGATTTTCAA 57.146 40.000 0.00 0.00 0.00 2.69
6941 13584 2.311124 ATCCTAGCTACAAACGTGGC 57.689 50.000 0.00 0.00 40.93 5.01
6946 13589 5.063880 CCCCAACATATCCTAGCTACAAAC 58.936 45.833 0.00 0.00 0.00 2.93
6952 13595 2.368875 CGTTCCCCAACATATCCTAGCT 59.631 50.000 0.00 0.00 32.14 3.32
6962 13605 0.250814 AATTACCGCGTTCCCCAACA 60.251 50.000 4.92 0.00 32.14 3.33
6963 13606 0.883153 AAATTACCGCGTTCCCCAAC 59.117 50.000 4.92 0.00 0.00 3.77
6964 13607 1.618487 AAAATTACCGCGTTCCCCAA 58.382 45.000 4.92 0.00 0.00 4.12
6965 13608 2.486472 TAAAATTACCGCGTTCCCCA 57.514 45.000 4.92 0.00 0.00 4.96
6966 13609 3.846423 TTTAAAATTACCGCGTTCCCC 57.154 42.857 4.92 0.00 0.00 4.81
6986 13629 6.757897 TCTTGCATGATCGTAGGAATTTTT 57.242 33.333 0.00 0.00 0.00 1.94
6987 13630 6.769822 AGATCTTGCATGATCGTAGGAATTTT 59.230 34.615 27.51 10.83 45.35 1.82
6988 13631 6.294473 AGATCTTGCATGATCGTAGGAATTT 58.706 36.000 27.51 11.40 45.35 1.82
6989 13632 5.862845 AGATCTTGCATGATCGTAGGAATT 58.137 37.500 27.51 11.97 45.35 2.17
6990 13633 5.480642 AGATCTTGCATGATCGTAGGAAT 57.519 39.130 27.51 12.55 45.35 3.01
6991 13634 4.944619 AGATCTTGCATGATCGTAGGAA 57.055 40.909 27.51 0.00 45.35 3.36
6992 13635 5.948758 AGATAGATCTTGCATGATCGTAGGA 59.051 40.000 27.51 16.51 45.35 2.94
6993 13636 6.206395 AGATAGATCTTGCATGATCGTAGG 57.794 41.667 27.51 0.00 45.35 3.18
6994 13637 7.066887 ACCTAGATAGATCTTGCATGATCGTAG 59.933 40.741 27.51 24.08 45.35 3.51
6995 13638 6.887002 ACCTAGATAGATCTTGCATGATCGTA 59.113 38.462 27.51 21.52 45.35 3.43
6996 13639 5.714333 ACCTAGATAGATCTTGCATGATCGT 59.286 40.000 27.51 22.28 45.35 3.73
6997 13640 6.035217 CACCTAGATAGATCTTGCATGATCG 58.965 44.000 27.51 17.87 45.35 3.69
6998 13641 7.167924 TCACCTAGATAGATCTTGCATGATC 57.832 40.000 27.05 27.05 42.18 2.92
6999 13642 7.736881 ATCACCTAGATAGATCTTGCATGAT 57.263 36.000 14.48 14.48 38.32 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.