Multiple sequence alignment - TraesCS3B01G265900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G265900 chr3B 100.000 9848 0 0 1 9848 426304962 426314809 0.000000e+00 18186.0
1 TraesCS3B01G265900 chr3B 92.913 127 9 0 7111 7237 383706803 383706929 1.690000e-42 185.0
2 TraesCS3B01G265900 chr3B 92.308 65 5 0 7880 7944 199557925 199557989 1.050000e-14 93.5
3 TraesCS3B01G265900 chr3B 92.308 65 5 0 7880 7944 199613605 199613669 1.050000e-14 93.5
4 TraesCS3B01G265900 chr3D 96.692 3779 97 11 14 3786 328969863 328973619 0.000000e+00 6261.0
5 TraesCS3B01G265900 chr3D 96.649 3223 82 11 3908 7110 328973616 328976832 0.000000e+00 5330.0
6 TraesCS3B01G265900 chr3D 94.094 1219 64 7 8528 9740 328978153 328979369 0.000000e+00 1845.0
7 TraesCS3B01G265900 chr3D 85.299 619 49 16 7887 8476 328977547 328978152 1.420000e-167 601.0
8 TraesCS3B01G265900 chr3D 91.176 204 16 2 7438 7639 328977130 328977333 9.740000e-70 276.0
9 TraesCS3B01G265900 chr3D 97.037 135 3 1 3781 3915 67437063 67437196 9.950000e-55 226.0
10 TraesCS3B01G265900 chr3D 86.735 196 25 1 7229 7423 328976833 328977028 5.990000e-52 217.0
11 TraesCS3B01G265900 chr3D 80.612 196 24 2 7622 7803 328977346 328977541 1.330000e-28 139.0
12 TraesCS3B01G265900 chr3D 88.785 107 10 2 9743 9848 328979403 328979508 8.030000e-26 130.0
13 TraesCS3B01G265900 chr3A 96.281 3791 102 17 14 3786 443811705 443815474 0.000000e+00 6183.0
14 TraesCS3B01G265900 chr3A 95.412 3226 89 15 3908 7110 443815471 443818660 0.000000e+00 5083.0
15 TraesCS3B01G265900 chr3A 89.817 1915 136 21 7860 9742 443819206 443821093 0.000000e+00 2401.0
16 TraesCS3B01G265900 chr3A 88.081 495 35 11 7229 7707 443818661 443819147 5.160000e-157 566.0
17 TraesCS3B01G265900 chr3A 92.453 106 7 1 9743 9848 443821125 443821229 6.160000e-32 150.0
18 TraesCS3B01G265900 chr4A 94.005 367 21 1 4201 4567 479426507 479426142 1.120000e-153 555.0
19 TraesCS3B01G265900 chr4A 93.460 367 24 0 4201 4567 480552941 480552575 6.730000e-151 545.0
20 TraesCS3B01G265900 chr4A 93.478 276 18 0 4292 4567 481059710 481059435 2.560000e-110 411.0
21 TraesCS3B01G265900 chr4A 92.275 233 18 0 4201 4433 479612268 479612036 2.050000e-86 331.0
22 TraesCS3B01G265900 chr4A 92.778 180 13 0 4201 4380 479895787 479895608 2.730000e-65 261.0
23 TraesCS3B01G265900 chr4A 85.837 233 33 0 4201 4433 480413603 480413371 2.120000e-61 248.0
24 TraesCS3B01G265900 chr4A 94.444 144 6 2 3779 3920 543398331 543398188 4.630000e-53 220.0
25 TraesCS3B01G265900 chr4A 93.289 149 9 1 4419 4567 479598969 479598822 1.670000e-52 219.0
26 TraesCS3B01G265900 chr4A 92.617 149 11 0 4419 4567 480562470 480562322 2.150000e-51 215.0
27 TraesCS3B01G265900 chr4A 89.130 138 12 3 7103 7237 223857973 223857836 1.700000e-37 169.0
28 TraesCS3B01G265900 chr4A 91.736 121 9 1 8735 8855 309397137 309397256 6.120000e-37 167.0
29 TraesCS3B01G265900 chr4D 93.750 368 19 2 4201 4564 96729054 96729421 5.200000e-152 549.0
30 TraesCS3B01G265900 chr4D 91.273 275 14 2 4292 4564 96896869 96897135 5.620000e-97 366.0
31 TraesCS3B01G265900 chr4D 90.476 105 10 0 8632 8736 150480030 150479926 1.330000e-28 139.0
32 TraesCS3B01G265900 chr4D 80.233 172 26 7 7267 7431 96814061 96813891 1.340000e-23 122.0
33 TraesCS3B01G265900 chr4D 88.312 77 7 2 7879 7953 87540127 87540051 3.790000e-14 91.6
34 TraesCS3B01G265900 chr6A 88.417 259 24 6 31 287 578072087 578072341 3.460000e-79 307.0
35 TraesCS3B01G265900 chr6A 97.015 67 2 0 8496 8562 277832976 277832910 8.080000e-21 113.0
36 TraesCS3B01G265900 chr6A 97.143 35 1 0 7815 7849 16100978 16101012 1.070000e-04 60.2
37 TraesCS3B01G265900 chr6D 87.549 257 25 6 31 287 431316303 431316552 3.480000e-74 291.0
38 TraesCS3B01G265900 chr6D 85.526 76 9 2 7781 7854 328750884 328750959 2.950000e-10 78.7
39 TraesCS3B01G265900 chr6B 84.775 289 31 13 17 298 651012593 651012875 2.710000e-70 278.0
40 TraesCS3B01G265900 chr6B 97.059 136 4 0 3780 3915 612317129 612317264 7.690000e-56 230.0
41 TraesCS3B01G265900 chr6B 93.846 130 7 1 7109 7237 625918164 625918293 2.810000e-45 195.0
42 TraesCS3B01G265900 chr6B 93.701 127 8 0 7111 7237 136800323 136800197 3.630000e-44 191.0
43 TraesCS3B01G265900 chr6B 85.000 140 16 5 7242 7379 264071453 264071589 4.800000e-28 137.0
44 TraesCS3B01G265900 chr7A 85.036 274 34 6 16 287 63577892 63578160 1.260000e-68 272.0
45 TraesCS3B01G265900 chr7A 97.710 131 3 0 3779 3909 78506267 78506137 9.950000e-55 226.0
46 TraesCS3B01G265900 chr7A 92.308 65 5 0 7880 7944 490675844 490675780 1.050000e-14 93.5
47 TraesCS3B01G265900 chr7A 97.143 35 1 0 7815 7849 262474302 262474336 1.070000e-04 60.2
48 TraesCS3B01G265900 chr1D 86.667 255 15 6 8496 8733 180365239 180365491 2.110000e-66 265.0
49 TraesCS3B01G265900 chr1D 83.916 286 33 12 16 299 461504986 461505260 2.730000e-65 261.0
50 TraesCS3B01G265900 chr1D 85.547 256 22 4 8496 8736 254474031 254473776 4.570000e-63 254.0
51 TraesCS3B01G265900 chr1D 84.091 264 15 6 8496 8733 180364202 180364464 7.690000e-56 230.0
52 TraesCS3B01G265900 chr1D 83.712 264 16 6 8496 8733 180363691 180363953 3.580000e-54 224.0
53 TraesCS3B01G265900 chr1D 91.525 118 9 1 8735 8852 180365553 180365669 2.850000e-35 161.0
54 TraesCS3B01G265900 chr1D 84.337 166 17 9 7260 7419 35619568 35619406 4.760000e-33 154.0
55 TraesCS3B01G265900 chr1B 84.733 262 34 5 28 287 622600649 622600906 3.530000e-64 257.0
56 TraesCS3B01G265900 chr1B 90.698 129 12 0 7109 7237 672663136 672663264 1.310000e-38 172.0
57 TraesCS3B01G265900 chr2D 84.556 259 32 7 31 287 490678719 490678467 5.910000e-62 250.0
58 TraesCS3B01G265900 chr2D 91.525 118 9 1 8735 8852 33932677 33932793 2.850000e-35 161.0
59 TraesCS3B01G265900 chr2D 81.595 163 25 3 7267 7424 620018287 620018449 8.030000e-26 130.0
60 TraesCS3B01G265900 chr2D 82.237 152 23 4 7278 7425 306293221 306293070 2.890000e-25 128.0
61 TraesCS3B01G265900 chr2D 88.571 70 8 0 7782 7851 38220550 38220619 1.760000e-12 86.1
62 TraesCS3B01G265900 chr7D 97.778 135 2 1 3781 3915 150359429 150359296 2.140000e-56 231.0
63 TraesCS3B01G265900 chr4B 97.744 133 3 0 3781 3913 399945437 399945305 7.690000e-56 230.0
64 TraesCS3B01G265900 chr4B 96.324 136 5 0 3780 3915 149160536 149160401 3.580000e-54 224.0
65 TraesCS3B01G265900 chr4B 80.838 167 25 5 7267 7426 668064745 668064911 3.730000e-24 124.0
66 TraesCS3B01G265900 chr4B 80.240 167 26 5 7267 7428 109591442 109591278 1.740000e-22 119.0
67 TraesCS3B01G265900 chr4B 93.846 65 4 0 7881 7945 141565851 141565915 2.260000e-16 99.0
68 TraesCS3B01G265900 chrUn 96.947 131 4 0 3779 3909 477687447 477687577 4.630000e-53 220.0
69 TraesCS3B01G265900 chrUn 83.333 264 17 6 8496 8733 471438051 471438313 1.670000e-52 219.0
70 TraesCS3B01G265900 chrUn 91.525 118 9 1 8735 8852 30304115 30304231 2.850000e-35 161.0
71 TraesCS3B01G265900 chrUn 95.000 40 2 0 7909 7948 127124546 127124507 8.260000e-06 63.9
72 TraesCS3B01G265900 chr1A 96.947 131 4 0 3779 3909 444433503 444433633 4.630000e-53 220.0
73 TraesCS3B01G265900 chr7B 93.651 126 8 0 7112 7237 55858348 55858473 1.310000e-43 189.0
74 TraesCS3B01G265900 chr7B 89.781 137 11 3 7103 7237 36733760 36733895 1.310000e-38 172.0
75 TraesCS3B01G265900 chr7B 88.406 69 7 1 7881 7948 616919452 616919384 2.280000e-11 82.4
76 TraesCS3B01G265900 chr7B 87.037 54 6 1 7895 7948 26031462 26031514 1.070000e-04 60.2
77 TraesCS3B01G265900 chr2B 93.077 130 8 1 7108 7237 36841565 36841693 1.310000e-43 189.0
78 TraesCS3B01G265900 chr2B 86.713 143 19 0 7095 7237 513692045 513692187 1.020000e-34 159.0
79 TraesCS3B01G265900 chr2B 82.517 143 18 6 7262 7397 184904428 184904570 1.740000e-22 119.0
80 TraesCS3B01G265900 chr2B 78.947 133 17 9 303 425 91037352 91037483 8.200000e-11 80.5
81 TraesCS3B01G265900 chr5B 84.021 194 12 6 8561 8736 48448174 48447982 1.700000e-37 169.0
82 TraesCS3B01G265900 chr5D 91.525 118 9 1 8735 8852 6238983 6239099 2.850000e-35 161.0
83 TraesCS3B01G265900 chr5D 91.525 118 9 1 8735 8852 432308073 432308189 2.850000e-35 161.0
84 TraesCS3B01G265900 chr5D 90.909 121 10 1 8735 8855 503327810 503327691 2.850000e-35 161.0
85 TraesCS3B01G265900 chr5D 82.927 123 19 2 303 425 380016153 380016273 1.050000e-19 110.0
86 TraesCS3B01G265900 chr5D 83.133 83 10 4 7782 7862 223296327 223296247 1.370000e-08 73.1
87 TraesCS3B01G265900 chr5A 91.489 47 2 1 7812 7856 694971067 694971113 8.260000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G265900 chr3B 426304962 426314809 9847 False 18186.000 18186 100.00000 1 9848 1 chr3B.!!$F4 9847
1 TraesCS3B01G265900 chr3D 328969863 328979508 9645 False 1849.875 6261 90.00525 14 9848 8 chr3D.!!$F2 9834
2 TraesCS3B01G265900 chr3A 443811705 443821229 9524 False 2876.600 6183 92.40880 14 9848 5 chr3A.!!$F1 9834
3 TraesCS3B01G265900 chr1D 180363691 180365669 1978 False 220.000 265 86.49875 8496 8852 4 chr1D.!!$F2 356

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
428 434 0.107361 ACGGGTATGTTTGCTAGCCC 60.107 55.000 13.29 3.65 34.01 5.19 F
829 848 1.555533 GTTTCCCCACCACACCAAAAA 59.444 47.619 0.00 0.00 0.00 1.94 F
832 851 1.691195 CCCCACCACACCAAAAACCC 61.691 60.000 0.00 0.00 0.00 4.11 F
1791 1811 3.196039 GGGAGAGGGACAAGAAAGACTAC 59.804 52.174 0.00 0.00 0.00 2.73 F
1888 1908 4.158025 AGGGTTACTCATACAAGAGACACG 59.842 45.833 0.00 0.00 38.98 4.49 F
1971 1991 4.383118 CCAGCTACCTGTGCTACTGTTTAT 60.383 45.833 0.00 0.00 38.92 1.40 F
3798 3821 0.032813 AAATACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14 F
3802 3825 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40 F
3804 3827 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 F
3805 3828 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24 F
3909 3932 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73 F
5432 5462 0.906282 TGCACATCTCTGCTGGGAGA 60.906 55.000 0.00 3.41 44.96 3.71 F
6040 6075 1.002430 TCACCTCCAGCAATCACAGAC 59.998 52.381 0.00 0.00 0.00 3.51 F
6586 6621 0.036306 GTGTGTTGGTGGAGGGTAGG 59.964 60.000 0.00 0.00 0.00 3.18 F
7737 7935 0.177373 GGGGTTAGGCTTGTACTCCG 59.823 60.000 0.00 0.00 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1239 1259 1.078528 ATCCACCACCGTCTCCTCA 59.921 57.895 0.00 0.00 0.00 3.86 R
2505 2527 0.037590 AAAACATGTAGAGGCGGGCA 59.962 50.000 0.00 0.00 0.00 5.36 R
2580 2602 4.582656 TCTCTCTTTAGCTGGAGTATCTGC 59.417 45.833 0.00 0.00 35.49 4.26 R
3785 3808 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R
3786 3809 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30 R
3891 3914 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46 R
4893 4920 1.281656 GGGCGAAAACCTGTCAACG 59.718 57.895 0.00 0.00 0.00 4.10 R
5432 5462 1.826720 CACCATTTGCTATGCCCAAGT 59.173 47.619 0.00 0.00 0.00 3.16 R
5633 5668 3.609103 AGTTGCATCGTTGTTCTTCAC 57.391 42.857 0.00 0.00 0.00 3.18 R
5692 5727 9.880157 AATTACTGGATTCAAAATCAGAATTGG 57.120 29.630 0.00 0.00 35.93 3.16 R
5896 5931 2.485814 GTCAAGCATTTCTGTGTCCTCC 59.514 50.000 0.00 0.00 0.00 4.30 R
6249 6284 1.358051 ATCATCTGCTGGGCCATCCA 61.358 55.000 6.72 6.78 44.79 3.41 R
7954 8152 0.328258 TCTCCCTAAGCCCTTTGCAC 59.672 55.000 0.00 0.00 44.83 4.57 R
8314 8542 1.607467 CCTTTGGTGCCTCCCCTTG 60.607 63.158 0.00 0.00 34.77 3.61 R
9078 10937 1.134228 ACTCCCGTTTGTAGGTGGTT 58.866 50.000 0.00 0.00 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 62 2.094906 TGCTCGTGTTAGTATCGCAAGT 60.095 45.455 0.00 0.00 39.48 3.16
67 69 6.252015 TCGTGTTAGTATCGCAAGTATGTTTC 59.748 38.462 0.00 0.00 39.48 2.78
73 75 6.599437 AGTATCGCAAGTATGTTTCACAAAC 58.401 36.000 0.00 0.00 39.32 2.93
85 87 5.347342 TGTTTCACAAACTTCATGCGAAAT 58.653 33.333 1.11 0.00 41.90 2.17
95 97 4.077844 TGCGAAATGGAGCAGCAA 57.922 50.000 0.00 0.00 38.59 3.91
207 210 8.643385 TTTGCCTCAAAATTTGCAGGTAGCAT 62.643 38.462 18.47 0.00 40.79 3.79
283 289 1.788229 AAGATATTTTTGGGCCCGGG 58.212 50.000 19.09 19.09 0.00 5.73
374 380 1.225376 TGATGTCGTCGGGTGTTTGC 61.225 55.000 0.00 0.00 0.00 3.68
426 432 0.377203 GCACGGGTATGTTTGCTAGC 59.623 55.000 8.10 8.10 32.00 3.42
428 434 0.107361 ACGGGTATGTTTGCTAGCCC 60.107 55.000 13.29 3.65 34.01 5.19
435 441 5.130350 GGTATGTTTGCTAGCCCTGATAAA 58.870 41.667 13.29 1.62 0.00 1.40
444 450 3.498774 AGCCCTGATAAAATGCTCGAT 57.501 42.857 0.00 0.00 0.00 3.59
450 456 5.300286 CCCTGATAAAATGCTCGATCCTTTT 59.700 40.000 7.30 7.30 0.00 2.27
534 540 7.876068 CACATAATAACAATACTCCCGGTACAT 59.124 37.037 0.00 0.00 32.72 2.29
582 588 2.029728 ACTCGATTTCGTAGTACGGACG 59.970 50.000 21.85 19.40 42.81 4.79
592 598 1.795768 AGTACGGACGTTCGACTACA 58.204 50.000 25.79 0.00 0.00 2.74
639 649 2.885644 CTCGTGTCCAATCCCGCG 60.886 66.667 0.00 0.00 36.00 6.46
805 824 2.765807 CGCCTCCACTCCTCCCAT 60.766 66.667 0.00 0.00 0.00 4.00
829 848 1.555533 GTTTCCCCACCACACCAAAAA 59.444 47.619 0.00 0.00 0.00 1.94
832 851 1.691195 CCCCACCACACCAAAAACCC 61.691 60.000 0.00 0.00 0.00 4.11
1239 1259 4.041464 GGAAGAAGAGGAAGGATAGGGTT 58.959 47.826 0.00 0.00 0.00 4.11
1290 1310 4.539083 TGGAACAGCGGCGTGTGT 62.539 61.111 9.37 10.13 0.00 3.72
1791 1811 3.196039 GGGAGAGGGACAAGAAAGACTAC 59.804 52.174 0.00 0.00 0.00 2.73
1801 1821 6.097915 ACAAGAAAGACTACGATTCCAAGA 57.902 37.500 0.00 0.00 0.00 3.02
1888 1908 4.158025 AGGGTTACTCATACAAGAGACACG 59.842 45.833 0.00 0.00 38.98 4.49
1971 1991 4.383118 CCAGCTACCTGTGCTACTGTTTAT 60.383 45.833 0.00 0.00 38.92 1.40
2153 2173 5.163322 TGGTTGCAAAGAGTCCATTTTTCAT 60.163 36.000 0.00 0.00 0.00 2.57
2505 2527 4.600062 ACTTGTTCTGTTTGTTCCTTCCT 58.400 39.130 0.00 0.00 0.00 3.36
2580 2602 7.515059 CGGTTTCTAAAGTGCACATTTTTGAAG 60.515 37.037 21.04 7.39 35.02 3.02
3335 3358 5.819379 TCTCTTGTTGTTGGAGATATCATGC 59.181 40.000 5.32 0.00 32.09 4.06
3608 3631 6.778834 AAATATTGGTCATGAATGTGCAGA 57.221 33.333 0.00 0.00 0.00 4.26
3670 3693 6.397272 TGGTGAGAAATGGATAAATGCAAAC 58.603 36.000 0.00 0.00 0.00 2.93
3690 3713 4.623932 ACAGAAGAACTTGCATGGAGTA 57.376 40.909 4.44 0.00 0.00 2.59
3787 3810 6.420913 TGCCTATCAGAAGGTAAATACTCC 57.579 41.667 0.00 0.00 39.02 3.85
3788 3811 5.307196 TGCCTATCAGAAGGTAAATACTCCC 59.693 44.000 0.00 0.00 39.02 4.30
3789 3812 5.544562 GCCTATCAGAAGGTAAATACTCCCT 59.455 44.000 0.00 0.00 39.02 4.20
3790 3813 6.295405 GCCTATCAGAAGGTAAATACTCCCTC 60.295 46.154 0.00 0.00 39.02 4.30
3791 3814 6.211785 CCTATCAGAAGGTAAATACTCCCTCC 59.788 46.154 0.00 0.00 31.46 4.30
3792 3815 3.958798 TCAGAAGGTAAATACTCCCTCCG 59.041 47.826 0.00 0.00 0.00 4.63
3793 3816 3.705072 CAGAAGGTAAATACTCCCTCCGT 59.295 47.826 0.00 0.00 0.00 4.69
3794 3817 3.959449 AGAAGGTAAATACTCCCTCCGTC 59.041 47.826 0.00 0.00 0.00 4.79
3795 3818 2.675583 AGGTAAATACTCCCTCCGTCC 58.324 52.381 0.00 0.00 0.00 4.79
3796 3819 1.339291 GGTAAATACTCCCTCCGTCCG 59.661 57.143 0.00 0.00 0.00 4.79
3797 3820 1.339291 GTAAATACTCCCTCCGTCCGG 59.661 57.143 0.00 0.00 0.00 5.14
3798 3821 0.032813 AAATACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14
3799 3822 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
3800 3823 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
3801 3824 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3802 3825 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3803 3826 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3804 3827 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3805 3828 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3806 3829 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3807 3830 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3808 3831 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3809 3832 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3810 3833 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3811 3834 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
3812 3835 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
3813 3836 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
3814 3837 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
3815 3838 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
3816 3839 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
3817 3840 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
3818 3841 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
3819 3842 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
3820 3843 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
3821 3844 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
3827 3850 7.614494 ACTTGTCATCAAAATGGATAAAAGGG 58.386 34.615 0.00 0.00 33.42 3.95
3828 3851 6.543430 TGTCATCAAAATGGATAAAAGGGG 57.457 37.500 0.00 0.00 33.42 4.79
3829 3852 6.259893 TGTCATCAAAATGGATAAAAGGGGA 58.740 36.000 0.00 0.00 33.42 4.81
3830 3853 6.902416 TGTCATCAAAATGGATAAAAGGGGAT 59.098 34.615 0.00 0.00 33.42 3.85
3831 3854 7.147689 TGTCATCAAAATGGATAAAAGGGGATG 60.148 37.037 0.00 0.00 33.42 3.51
3832 3855 6.902416 TCATCAAAATGGATAAAAGGGGATGT 59.098 34.615 0.00 0.00 33.42 3.06
3833 3856 8.064389 TCATCAAAATGGATAAAAGGGGATGTA 58.936 33.333 0.00 0.00 33.42 2.29
3834 3857 8.873144 CATCAAAATGGATAAAAGGGGATGTAT 58.127 33.333 0.00 0.00 0.00 2.29
3835 3858 8.477419 TCAAAATGGATAAAAGGGGATGTATC 57.523 34.615 0.00 0.00 0.00 2.24
3836 3859 8.288812 TCAAAATGGATAAAAGGGGATGTATCT 58.711 33.333 0.00 0.00 0.00 1.98
3837 3860 9.586732 CAAAATGGATAAAAGGGGATGTATCTA 57.413 33.333 0.00 0.00 0.00 1.98
3838 3861 9.813826 AAAATGGATAAAAGGGGATGTATCTAG 57.186 33.333 0.00 0.00 0.00 2.43
3839 3862 6.952605 TGGATAAAAGGGGATGTATCTAGG 57.047 41.667 0.00 0.00 0.00 3.02
3840 3863 6.399013 TGGATAAAAGGGGATGTATCTAGGT 58.601 40.000 0.00 0.00 0.00 3.08
3841 3864 6.272324 TGGATAAAAGGGGATGTATCTAGGTG 59.728 42.308 0.00 0.00 0.00 4.00
3842 3865 6.272558 GGATAAAAGGGGATGTATCTAGGTGT 59.727 42.308 0.00 0.00 0.00 4.16
3843 3866 7.456902 GGATAAAAGGGGATGTATCTAGGTGTA 59.543 40.741 0.00 0.00 0.00 2.90
3844 3867 8.990693 ATAAAAGGGGATGTATCTAGGTGTAT 57.009 34.615 0.00 0.00 0.00 2.29
3845 3868 7.707467 AAAAGGGGATGTATCTAGGTGTATT 57.293 36.000 0.00 0.00 0.00 1.89
3846 3869 7.707467 AAAGGGGATGTATCTAGGTGTATTT 57.293 36.000 0.00 0.00 0.00 1.40
3847 3870 7.707467 AAGGGGATGTATCTAGGTGTATTTT 57.293 36.000 0.00 0.00 0.00 1.82
3848 3871 8.808240 AAGGGGATGTATCTAGGTGTATTTTA 57.192 34.615 0.00 0.00 0.00 1.52
3849 3872 8.437274 AGGGGATGTATCTAGGTGTATTTTAG 57.563 38.462 0.00 0.00 0.00 1.85
3850 3873 8.017251 AGGGGATGTATCTAGGTGTATTTTAGT 58.983 37.037 0.00 0.00 0.00 2.24
3851 3874 8.657712 GGGGATGTATCTAGGTGTATTTTAGTT 58.342 37.037 0.00 0.00 0.00 2.24
3852 3875 9.708092 GGGATGTATCTAGGTGTATTTTAGTTC 57.292 37.037 0.00 0.00 0.00 3.01
3884 3907 9.696917 ACAACTCTTTTTATCCATTTTGATGAC 57.303 29.630 0.00 0.00 0.00 3.06
3885 3908 9.695526 CAACTCTTTTTATCCATTTTGATGACA 57.304 29.630 0.00 0.00 0.00 3.58
3887 3910 9.918630 ACTCTTTTTATCCATTTTGATGACAAG 57.081 29.630 0.00 0.00 37.32 3.16
3888 3911 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
3895 3918 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
3896 3919 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
3897 3920 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
3898 3921 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
3899 3922 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
3900 3923 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
3901 3924 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
3902 3925 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
3903 3926 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3904 3927 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3905 3928 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
3906 3929 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
3907 3930 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
3908 3931 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
3909 3932 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
3933 3956 7.458397 ACTTGTAGGAATCCTTGTATTGTGAA 58.542 34.615 7.30 0.00 34.61 3.18
3936 3959 7.103641 TGTAGGAATCCTTGTATTGTGAACTC 58.896 38.462 7.30 0.00 34.61 3.01
3938 3961 7.496346 AGGAATCCTTGTATTGTGAACTCTA 57.504 36.000 0.00 0.00 0.00 2.43
3939 3962 7.560368 AGGAATCCTTGTATTGTGAACTCTAG 58.440 38.462 0.00 0.00 0.00 2.43
4049 4076 6.639632 TGATGCTTGCTTCTTCTAAAGTTT 57.360 33.333 9.36 0.00 0.00 2.66
4221 4248 2.115343 ATTGGTCTTCGGAAAGGCTC 57.885 50.000 0.00 0.00 37.28 4.70
4227 4254 2.224314 GTCTTCGGAAAGGCTCAAACAG 59.776 50.000 0.00 0.00 34.15 3.16
4307 4334 5.989477 TGATCGAACACCAAGGAAAGATAT 58.011 37.500 0.00 0.00 0.00 1.63
4308 4335 5.817296 TGATCGAACACCAAGGAAAGATATG 59.183 40.000 0.00 0.00 0.00 1.78
4381 4408 2.007608 GGTTTTCAGGTAGGCTTAGCG 58.992 52.381 0.00 0.00 32.56 4.26
4574 4601 1.625818 AGGCACTTCTCCAAATCGTCT 59.374 47.619 0.00 0.00 27.25 4.18
4670 4697 2.050144 TGGAGATAGGAGGTTCCATGC 58.950 52.381 0.00 0.00 39.61 4.06
4893 4920 6.000219 AGTTTCATATCCTATGCATGACACC 59.000 40.000 10.16 0.00 32.36 4.16
5110 5137 5.122711 GCATTGAAGGGACAAAATGAATTGG 59.877 40.000 0.00 0.00 34.56 3.16
5204 5231 6.351286 GGTGGACAATGCAATCTTAATCCTTT 60.351 38.462 0.00 0.00 0.00 3.11
5230 5257 3.495753 GCAGAAAGAAGCAAACCATTTGG 59.504 43.478 3.64 0.00 40.94 3.28
5262 5292 1.197721 CGTGAAGCAAAGGGTGATGTC 59.802 52.381 0.00 0.00 0.00 3.06
5263 5293 2.229792 GTGAAGCAAAGGGTGATGTCA 58.770 47.619 0.00 0.00 0.00 3.58
5264 5294 2.030805 GTGAAGCAAAGGGTGATGTCAC 60.031 50.000 4.58 4.58 45.72 3.67
5432 5462 0.906282 TGCACATCTCTGCTGGGAGA 60.906 55.000 0.00 3.41 44.96 3.71
5880 5915 4.619160 GCAAACTGATGGGAAAATGGACTC 60.619 45.833 0.00 0.00 0.00 3.36
5896 5931 7.678947 AATGGACTCAACACAAGAGAATAAG 57.321 36.000 0.00 0.00 36.91 1.73
5978 6013 1.241315 GCACCACCGTACTGGCATTT 61.241 55.000 1.12 0.00 43.94 2.32
6040 6075 1.002430 TCACCTCCAGCAATCACAGAC 59.998 52.381 0.00 0.00 0.00 3.51
6058 6093 2.570752 AGACTCTGGTGATGTGAATGCT 59.429 45.455 0.00 0.00 0.00 3.79
6109 6144 2.171448 GGATGCACCTCCAGTAATCACT 59.829 50.000 1.24 0.00 35.24 3.41
6144 6179 2.262774 GAGATGGTGGCACCTCCTGG 62.263 65.000 34.69 0.00 39.58 4.45
6178 6213 3.321039 TGATGAAGATATGGAGGTGGCT 58.679 45.455 0.00 0.00 0.00 4.75
6229 6264 1.361204 ACATGGAGGATGTGTCACCA 58.639 50.000 0.00 0.00 44.12 4.17
6249 6284 3.876589 CTGCAGTTGCCGTACCCGT 62.877 63.158 5.25 0.00 41.18 5.28
6267 6302 2.002407 TGGATGGCCCAGCAGATGA 61.002 57.895 0.00 0.00 40.82 2.92
6435 6470 1.077169 TCCTAACAGTGGAGAGGCTGA 59.923 52.381 0.00 0.00 36.62 4.26
6586 6621 0.036306 GTGTGTTGGTGGAGGGTAGG 59.964 60.000 0.00 0.00 0.00 3.18
6587 6622 1.131303 TGTGTTGGTGGAGGGTAGGG 61.131 60.000 0.00 0.00 0.00 3.53
6598 6633 5.044624 GGTGGAGGGTAGGGTAAATTTAAGT 60.045 44.000 0.00 0.00 0.00 2.24
6721 6756 4.650545 TGAGTTGCGTCGGTTTTTATAC 57.349 40.909 0.00 0.00 0.00 1.47
6732 6767 5.647225 GTCGGTTTTTATACACCACCCATTA 59.353 40.000 0.00 0.00 31.84 1.90
6783 6834 1.298859 GGCTGGTGTGAGCTTAACGG 61.299 60.000 0.00 0.00 39.11 4.44
6848 6899 1.071605 CTTGCGCTACAGTTGTCCTC 58.928 55.000 9.73 0.00 0.00 3.71
6863 6914 2.079925 GTCCTCTCAGCATTGTTCCAC 58.920 52.381 0.00 0.00 0.00 4.02
6921 6972 2.861935 GCGCTTTCAATTTCATCATGGG 59.138 45.455 0.00 0.00 0.00 4.00
6942 6995 6.706295 TGGGGAAATTTAAAATTACTGCCAG 58.294 36.000 0.00 0.00 0.00 4.85
7021 7076 4.379499 GCAACGCTTAGCCTGAAATAAAGT 60.379 41.667 0.00 0.00 0.00 2.66
7025 7080 6.839033 ACGCTTAGCCTGAAATAAAGTTTAC 58.161 36.000 0.00 0.00 0.00 2.01
7063 7120 3.066342 CCCTTAGCTTCATGATGCAAGTG 59.934 47.826 29.04 18.77 34.33 3.16
7121 7178 8.887264 AGTTGGACTATATTATACTCCCTCTG 57.113 38.462 6.83 0.00 0.00 3.35
7122 7179 8.457757 AGTTGGACTATATTATACTCCCTCTGT 58.542 37.037 6.83 0.00 0.00 3.41
7123 7180 8.741841 GTTGGACTATATTATACTCCCTCTGTC 58.258 40.741 6.83 0.00 0.00 3.51
7124 7181 7.411808 TGGACTATATTATACTCCCTCTGTCC 58.588 42.308 0.00 0.00 39.37 4.02
7125 7182 6.543100 GGACTATATTATACTCCCTCTGTCCG 59.457 46.154 0.00 0.00 31.48 4.79
7126 7183 6.424883 ACTATATTATACTCCCTCTGTCCGG 58.575 44.000 0.00 0.00 0.00 5.14
7127 7184 3.897657 ATTATACTCCCTCTGTCCGGA 57.102 47.619 0.00 0.00 0.00 5.14
7128 7185 3.675348 TTATACTCCCTCTGTCCGGAA 57.325 47.619 5.23 0.00 0.00 4.30
7129 7186 2.544844 ATACTCCCTCTGTCCGGAAA 57.455 50.000 5.23 0.00 0.00 3.13
7130 7187 2.544844 TACTCCCTCTGTCCGGAAAT 57.455 50.000 5.23 0.00 0.00 2.17
7131 7188 2.544844 ACTCCCTCTGTCCGGAAATA 57.455 50.000 5.23 0.00 0.00 1.40
7132 7189 2.108970 ACTCCCTCTGTCCGGAAATAC 58.891 52.381 5.23 0.00 0.00 1.89
7133 7190 2.292323 ACTCCCTCTGTCCGGAAATACT 60.292 50.000 5.23 0.00 0.00 2.12
7134 7191 2.766828 CTCCCTCTGTCCGGAAATACTT 59.233 50.000 5.23 0.00 0.00 2.24
7135 7192 2.500098 TCCCTCTGTCCGGAAATACTTG 59.500 50.000 5.23 0.00 0.00 3.16
7136 7193 2.236395 CCCTCTGTCCGGAAATACTTGT 59.764 50.000 5.23 0.00 0.00 3.16
7137 7194 3.522553 CCTCTGTCCGGAAATACTTGTC 58.477 50.000 5.23 0.00 0.00 3.18
7138 7195 3.056107 CCTCTGTCCGGAAATACTTGTCA 60.056 47.826 5.23 0.00 0.00 3.58
7139 7196 4.383118 CCTCTGTCCGGAAATACTTGTCAT 60.383 45.833 5.23 0.00 0.00 3.06
7140 7197 4.755411 TCTGTCCGGAAATACTTGTCATC 58.245 43.478 5.23 0.00 0.00 2.92
7141 7198 4.221924 TCTGTCCGGAAATACTTGTCATCA 59.778 41.667 5.23 0.00 0.00 3.07
7142 7199 4.900684 TGTCCGGAAATACTTGTCATCAA 58.099 39.130 5.23 0.00 0.00 2.57
7143 7200 5.309638 TGTCCGGAAATACTTGTCATCAAA 58.690 37.500 5.23 0.00 32.87 2.69
7144 7201 5.765677 TGTCCGGAAATACTTGTCATCAAAA 59.234 36.000 5.23 0.00 32.87 2.44
7145 7202 6.432783 TGTCCGGAAATACTTGTCATCAAAAT 59.567 34.615 5.23 0.00 32.87 1.82
7146 7203 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
7147 7204 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
7148 7205 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
7149 7206 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
7172 7229 9.834628 GAATAAAGAGAGATGTATCTAGAACGG 57.165 37.037 0.00 0.00 37.25 4.44
7173 7230 9.575868 AATAAAGAGAGATGTATCTAGAACGGA 57.424 33.333 0.00 0.00 37.25 4.69
7174 7231 7.883391 AAAGAGAGATGTATCTAGAACGGAA 57.117 36.000 0.00 0.00 37.25 4.30
7175 7232 7.883391 AAGAGAGATGTATCTAGAACGGAAA 57.117 36.000 0.00 0.00 37.25 3.13
7176 7233 8.472007 AAGAGAGATGTATCTAGAACGGAAAT 57.528 34.615 0.00 0.00 37.25 2.17
7177 7234 9.575868 AAGAGAGATGTATCTAGAACGGAAATA 57.424 33.333 0.00 0.00 37.25 1.40
7178 7235 9.747898 AGAGAGATGTATCTAGAACGGAAATAT 57.252 33.333 0.00 0.00 37.25 1.28
7179 7236 9.781834 GAGAGATGTATCTAGAACGGAAATATG 57.218 37.037 0.00 0.00 37.25 1.78
7180 7237 9.303116 AGAGATGTATCTAGAACGGAAATATGT 57.697 33.333 0.00 0.00 37.25 2.29
7181 7238 9.562583 GAGATGTATCTAGAACGGAAATATGTC 57.437 37.037 0.00 0.00 37.25 3.06
7182 7239 9.303116 AGATGTATCTAGAACGGAAATATGTCT 57.697 33.333 0.00 0.00 34.85 3.41
7185 7242 9.788889 TGTATCTAGAACGGAAATATGTCTAGA 57.211 33.333 10.27 10.27 38.94 2.43
7189 7246 9.788889 TCTAGAACGGAAATATGTCTAGATACA 57.211 33.333 0.00 0.00 32.48 2.29
7192 7249 8.524487 AGAACGGAAATATGTCTAGATACATCC 58.476 37.037 0.00 0.00 40.52 3.51
7193 7250 7.171630 ACGGAAATATGTCTAGATACATCCC 57.828 40.000 0.00 0.00 40.52 3.85
7194 7251 6.154706 ACGGAAATATGTCTAGATACATCCCC 59.845 42.308 0.00 0.00 40.52 4.81
7195 7252 6.381420 CGGAAATATGTCTAGATACATCCCCT 59.619 42.308 0.00 0.00 40.52 4.79
7196 7253 7.093289 CGGAAATATGTCTAGATACATCCCCTT 60.093 40.741 0.00 0.00 40.52 3.95
7197 7254 8.606830 GGAAATATGTCTAGATACATCCCCTTT 58.393 37.037 0.00 0.00 40.52 3.11
7202 7259 7.554959 TGTCTAGATACATCCCCTTTAATCC 57.445 40.000 0.00 0.00 0.00 3.01
7203 7260 7.079700 TGTCTAGATACATCCCCTTTAATCCA 58.920 38.462 0.00 0.00 0.00 3.41
7204 7261 7.739444 TGTCTAGATACATCCCCTTTAATCCAT 59.261 37.037 0.00 0.00 0.00 3.41
7205 7262 8.606830 GTCTAGATACATCCCCTTTAATCCATT 58.393 37.037 0.00 0.00 0.00 3.16
7206 7263 9.182642 TCTAGATACATCCCCTTTAATCCATTT 57.817 33.333 0.00 0.00 0.00 2.32
7207 7264 9.813826 CTAGATACATCCCCTTTAATCCATTTT 57.186 33.333 0.00 0.00 0.00 1.82
7208 7265 8.482852 AGATACATCCCCTTTAATCCATTTTG 57.517 34.615 0.00 0.00 0.00 2.44
7209 7266 8.288812 AGATACATCCCCTTTAATCCATTTTGA 58.711 33.333 0.00 0.00 0.00 2.69
7210 7267 9.093458 GATACATCCCCTTTAATCCATTTTGAT 57.907 33.333 0.00 0.00 0.00 2.57
7211 7268 7.128234 ACATCCCCTTTAATCCATTTTGATG 57.872 36.000 0.00 0.00 33.80 3.07
7212 7269 6.902416 ACATCCCCTTTAATCCATTTTGATGA 59.098 34.615 0.00 0.00 32.39 2.92
7213 7270 6.790232 TCCCCTTTAATCCATTTTGATGAC 57.210 37.500 0.00 0.00 0.00 3.06
7214 7271 6.259893 TCCCCTTTAATCCATTTTGATGACA 58.740 36.000 0.00 0.00 0.00 3.58
7215 7272 6.728164 TCCCCTTTAATCCATTTTGATGACAA 59.272 34.615 0.00 0.00 0.00 3.18
7216 7273 7.043565 CCCCTTTAATCCATTTTGATGACAAG 58.956 38.462 0.00 0.00 37.32 3.16
7217 7274 7.310609 CCCCTTTAATCCATTTTGATGACAAGT 60.311 37.037 0.00 0.00 37.32 3.16
7218 7275 8.748412 CCCTTTAATCCATTTTGATGACAAGTA 58.252 33.333 0.00 0.00 37.32 2.24
7224 7281 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
7225 7282 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
7226 7283 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
7227 7284 7.812191 CCATTTTGATGACAAGTATTTTCGGAA 59.188 33.333 0.00 0.00 37.32 4.30
7241 7298 8.101419 AGTATTTTCGGAAGTAGGAAGTTGATT 58.899 33.333 0.00 0.00 0.00 2.57
7255 7312 7.788026 AGGAAGTTGATTACGTGGACAATATA 58.212 34.615 0.00 0.00 0.00 0.86
7287 7344 9.860393 AGTATTACTCCCTCCATTCCTAAATAT 57.140 33.333 0.00 0.00 0.00 1.28
7393 7453 6.477033 CCATTTGTAGTCGGTGAAATCTCTAG 59.523 42.308 0.00 0.00 0.00 2.43
7402 7462 5.105716 TCGGTGAAATCTCTAGAAGGACTTG 60.106 44.000 0.00 0.00 0.00 3.16
7408 7468 9.877178 TGAAATCTCTAGAAGGACTTGTATTTC 57.123 33.333 0.00 0.00 36.60 2.17
7414 7474 7.893658 TCTAGAAGGACTTGTATTTCGAAACT 58.106 34.615 13.81 5.47 0.00 2.66
7436 7496 7.973048 ACTGAGGGAGTACTACATTTATCAA 57.027 36.000 7.57 0.00 30.86 2.57
7481 7629 7.902387 AGAAAACGTAGGAAGAATTTCTACC 57.098 36.000 5.95 0.00 35.87 3.18
7543 7695 4.949966 TTTTAGGCTGGGTATTTGGGTA 57.050 40.909 0.00 0.00 0.00 3.69
7707 7891 0.750850 CACCCCGTATACCCACAGAG 59.249 60.000 0.00 0.00 0.00 3.35
7708 7892 0.632835 ACCCCGTATACCCACAGAGA 59.367 55.000 0.00 0.00 0.00 3.10
7709 7893 1.007479 ACCCCGTATACCCACAGAGAA 59.993 52.381 0.00 0.00 0.00 2.87
7710 7894 2.112998 CCCCGTATACCCACAGAGAAA 58.887 52.381 0.00 0.00 0.00 2.52
7711 7895 2.159000 CCCCGTATACCCACAGAGAAAC 60.159 54.545 0.00 0.00 0.00 2.78
7712 7896 2.498481 CCCGTATACCCACAGAGAAACA 59.502 50.000 0.00 0.00 0.00 2.83
7713 7897 3.134081 CCCGTATACCCACAGAGAAACAT 59.866 47.826 0.00 0.00 0.00 2.71
7719 7917 1.806542 CCCACAGAGAAACATTGTCGG 59.193 52.381 0.00 0.00 0.00 4.79
7737 7935 0.177373 GGGGTTAGGCTTGTACTCCG 59.823 60.000 0.00 0.00 0.00 4.63
7741 7939 1.547372 GTTAGGCTTGTACTCCGTCCA 59.453 52.381 0.00 0.00 0.00 4.02
7753 7951 2.028385 ACTCCGTCCAAGCGTTTAGATT 60.028 45.455 0.00 0.00 0.00 2.40
7759 7957 5.577945 CCGTCCAAGCGTTTAGATTACTAAA 59.422 40.000 0.00 0.00 43.52 1.85
7760 7958 6.091169 CCGTCCAAGCGTTTAGATTACTAAAA 59.909 38.462 0.00 0.00 45.97 1.52
7869 8067 9.393512 ACAGAGAGTATAACTAATAGTGTTCGT 57.606 33.333 0.00 0.00 0.00 3.85
7962 8160 6.260050 TCTTTACAAAGAGTACAGTGCAAAGG 59.740 38.462 0.22 0.00 39.95 3.11
8037 8235 7.584108 CATGAGTGCTTGTAAATAAACACTGA 58.416 34.615 0.00 0.00 38.42 3.41
8065 8264 9.438228 GCTTAAAGAACTGGTTTATTCTCTAGT 57.562 33.333 0.00 0.00 34.01 2.57
8068 8267 8.834749 AAAGAACTGGTTTATTCTCTAGTCAC 57.165 34.615 0.00 0.00 34.01 3.67
8071 8270 8.308207 AGAACTGGTTTATTCTCTAGTCACTTC 58.692 37.037 0.00 0.00 28.79 3.01
8181 8408 7.606456 CAGCTTACTATTCTGTCAAACCCTTTA 59.394 37.037 0.00 0.00 0.00 1.85
8223 8450 1.855295 TACGTCAAGGACTGGGCATA 58.145 50.000 0.00 0.00 0.00 3.14
8243 8470 6.647067 GGCATATCTGACTTTATTCGTAAGCT 59.353 38.462 0.00 0.00 37.18 3.74
8277 8504 6.734137 AGATAAACACTTTGCATCGACAAAA 58.266 32.000 3.21 0.00 38.96 2.44
8278 8505 6.857964 AGATAAACACTTTGCATCGACAAAAG 59.142 34.615 12.39 12.39 38.96 2.27
8279 8506 4.370364 AACACTTTGCATCGACAAAAGT 57.630 36.364 13.40 13.40 38.96 2.66
8293 8520 4.454161 CGACAAAAGTATGACATTCCACCA 59.546 41.667 0.00 0.00 0.00 4.17
8390 8618 9.869844 CATTTAGATTGCTTAGATTTAAGACCG 57.130 33.333 7.19 0.00 38.88 4.79
8391 8619 5.993106 AGATTGCTTAGATTTAAGACCGC 57.007 39.130 7.19 0.00 38.88 5.68
8464 8692 4.503910 TCACACTCCGATTAATCCACTTG 58.496 43.478 9.87 5.30 0.00 3.16
8477 8705 9.922305 GATTAATCCACTTGTCTAAAAATCTCG 57.078 33.333 3.92 0.00 0.00 4.04
8674 10467 8.615211 TCTGTGATTAATCATTTGCTATGTCAC 58.385 33.333 20.65 5.83 39.30 3.67
8726 10521 6.301169 AGTATGACACCCCTCTTTCTTTAG 57.699 41.667 0.00 0.00 0.00 1.85
8733 10588 6.770542 ACACCCCTCTTTCTTTAGTTTAGAG 58.229 40.000 0.00 0.00 33.73 2.43
8844 10699 6.690460 GCCCTTTTTAAATTCCAGGGTTTCTT 60.690 38.462 17.41 0.00 45.55 2.52
8887 10742 2.758009 ACATTGGATGCACAAGTTTGC 58.242 42.857 0.00 3.86 43.31 3.68
8888 10743 2.070783 CATTGGATGCACAAGTTTGCC 58.929 47.619 0.00 0.00 42.25 4.52
8893 10748 1.340889 GATGCACAAGTTTGCCCTTCA 59.659 47.619 0.00 0.00 42.25 3.02
8988 10847 3.269381 TGACCTCTAATTTCCCAATGCCT 59.731 43.478 0.00 0.00 0.00 4.75
9011 10870 3.111484 GGGAAGAGAAGAGATCCCTTGT 58.889 50.000 0.00 0.00 46.65 3.16
9017 10876 5.679601 AGAGAAGAGATCCCTTGTATTTGC 58.320 41.667 0.00 0.00 0.00 3.68
9043 10902 1.028868 GGCAAGGGTGATGCTGTCTC 61.029 60.000 0.00 0.00 43.34 3.36
9078 10937 3.157087 GGTCAAGCTTTGAATCTGGGAA 58.843 45.455 0.00 0.00 42.15 3.97
9186 11050 4.572985 TGACTCCTGCATTTTCAAACAG 57.427 40.909 0.00 0.00 0.00 3.16
9220 11084 1.037030 CACCTGTTGTGTTGGCACCT 61.037 55.000 0.00 0.00 44.65 4.00
9221 11085 0.548989 ACCTGTTGTGTTGGCACCTA 59.451 50.000 0.00 0.00 44.65 3.08
9275 11140 2.428890 ACATCCGAAAAACCTTGCAACA 59.571 40.909 0.00 0.00 0.00 3.33
9318 11183 7.028926 TGCATTCTTGAATTGTTGCAAATTT 57.971 28.000 0.00 0.00 37.17 1.82
9369 11234 6.966435 AGGCAATTGTATTGTTGTATTTGC 57.034 33.333 7.40 0.00 0.00 3.68
9436 11301 4.886755 ATTTGATGGATCTGGAAGGGAA 57.113 40.909 0.00 0.00 0.00 3.97
9450 11315 6.273730 TCTGGAAGGGAATAGTGTTTTTCCTA 59.726 38.462 10.57 0.00 41.02 2.94
9462 11327 5.133153 AGTGTTTTTCCTACCAAAGAGGGTA 59.867 40.000 0.00 0.00 43.89 3.69
9509 11374 8.592809 ACACCACAAAAATGTCATGGTATTAAT 58.407 29.630 0.00 0.00 41.79 1.40
9515 11380 5.947228 AATGTCATGGTATTAATGAGCGG 57.053 39.130 0.00 0.00 34.78 5.52
9536 11401 3.429822 GGAGCATGTGGGTGATTTGAATG 60.430 47.826 0.00 0.00 0.00 2.67
9583 11448 6.480763 TGATGTTAGCAAGGGTATGAGAAAA 58.519 36.000 0.00 0.00 0.00 2.29
9605 11470 9.788960 GAAAAGGTTTCAGAATTGATATACCAC 57.211 33.333 0.00 0.00 34.56 4.16
9612 11477 8.492673 TTCAGAATTGATATACCACAGTTCAC 57.507 34.615 0.00 0.00 35.97 3.18
9618 11483 6.790232 TGATATACCACAGTTCACAGATCA 57.210 37.500 0.00 0.00 0.00 2.92
9625 11490 3.434641 CACAGTTCACAGATCAAAGCGAT 59.565 43.478 0.00 0.00 36.91 4.58
9640 11505 1.168714 GCGATCTTGGCAAAAGGACT 58.831 50.000 0.00 0.00 0.00 3.85
9725 11590 2.291465 CCCGGTCACATCTAATGCATTG 59.709 50.000 22.27 8.40 0.00 2.82
9726 11591 2.945008 CCGGTCACATCTAATGCATTGT 59.055 45.455 22.27 9.10 0.00 2.71
9755 11651 9.761504 TTGAATATGAATGTTGCTTTTCTCAAA 57.238 25.926 0.00 0.00 0.00 2.69
9756 11652 9.414295 TGAATATGAATGTTGCTTTTCTCAAAG 57.586 29.630 0.00 0.00 42.26 2.77
9757 11653 9.630098 GAATATGAATGTTGCTTTTCTCAAAGA 57.370 29.630 0.00 0.00 41.97 2.52
9758 11654 9.635520 AATATGAATGTTGCTTTTCTCAAAGAG 57.364 29.630 0.00 0.00 41.97 2.85
9759 11655 6.455360 TGAATGTTGCTTTTCTCAAAGAGT 57.545 33.333 0.00 0.00 41.97 3.24
9761 11657 7.322664 TGAATGTTGCTTTTCTCAAAGAGTTT 58.677 30.769 0.00 0.00 41.97 2.66
9762 11658 7.276218 TGAATGTTGCTTTTCTCAAAGAGTTTG 59.724 33.333 0.00 0.00 41.97 2.93
9763 11659 6.266168 TGTTGCTTTTCTCAAAGAGTTTGA 57.734 33.333 2.30 2.30 46.68 2.69
9834 11731 4.884744 TGTTTTAGTAGCTGCTTGGTTTCA 59.115 37.500 10.41 0.22 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.587772 TCGGAATTCTTTGAAAAACAATTTACA 57.412 25.926 5.23 0.00 38.36 2.41
4 5 9.546428 AGATCGGAATTCTTTGAAAAACAATTT 57.454 25.926 5.23 0.00 38.36 1.82
5 6 9.546428 AAGATCGGAATTCTTTGAAAAACAATT 57.454 25.926 5.23 0.00 38.36 2.32
6 7 9.546428 AAAGATCGGAATTCTTTGAAAAACAAT 57.454 25.926 5.23 0.00 40.86 2.71
7 8 8.940768 AAAGATCGGAATTCTTTGAAAAACAA 57.059 26.923 5.23 0.00 40.86 2.83
8 9 8.816144 CAAAAGATCGGAATTCTTTGAAAAACA 58.184 29.630 5.23 0.00 41.38 2.83
9 10 8.817100 ACAAAAGATCGGAATTCTTTGAAAAAC 58.183 29.630 17.56 4.71 41.38 2.43
10 11 8.940768 ACAAAAGATCGGAATTCTTTGAAAAA 57.059 26.923 17.56 0.00 41.38 1.94
11 12 9.677567 CTACAAAAGATCGGAATTCTTTGAAAA 57.322 29.630 17.56 6.37 41.38 2.29
12 13 9.062524 TCTACAAAAGATCGGAATTCTTTGAAA 57.937 29.630 17.56 8.08 41.38 2.69
19 20 6.563010 CGAGCATCTACAAAAGATCGGAATTC 60.563 42.308 0.00 0.00 43.42 2.17
25 26 3.859961 ACACGAGCATCTACAAAAGATCG 59.140 43.478 0.00 0.00 43.42 3.69
29 31 7.305475 CGATACTAACACGAGCATCTACAAAAG 60.305 40.741 0.00 0.00 0.00 2.27
60 62 6.499172 TTTCGCATGAAGTTTGTGAAACATA 58.501 32.000 10.73 0.00 44.34 2.29
67 69 3.899734 TCCATTTCGCATGAAGTTTGTG 58.100 40.909 0.00 0.00 35.06 3.33
73 75 1.533338 GCTGCTCCATTTCGCATGAAG 60.533 52.381 0.00 0.00 35.06 3.02
85 87 0.874390 GACGAAACATTGCTGCTCCA 59.126 50.000 0.00 0.00 0.00 3.86
95 97 9.680315 TTTATTTATTTTTCACCGACGAAACAT 57.320 25.926 0.00 2.23 34.68 2.71
179 182 4.888823 ACCTGCAAATTTTGAGGCAAAAAT 59.111 33.333 13.26 5.40 44.68 1.82
266 269 1.328279 CTCCCGGGCCCAAAAATATC 58.672 55.000 24.92 0.00 0.00 1.63
300 306 7.153315 ACATGACAAACAACATGATAAATGCA 58.847 30.769 12.90 0.00 44.28 3.96
354 360 1.222300 CAAACACCCGACGACATCAA 58.778 50.000 0.00 0.00 0.00 2.57
374 380 1.826385 AAAGAAAGGCATCCCTCGTG 58.174 50.000 0.00 0.00 41.90 4.35
426 432 4.013267 AGGATCGAGCATTTTATCAGGG 57.987 45.455 1.84 0.00 0.00 4.45
582 588 1.135460 CGGGTCCTTCTGTAGTCGAAC 60.135 57.143 0.00 0.00 0.00 3.95
805 824 1.534697 GTGTGGTGGGGAAACAGGA 59.465 57.895 0.00 0.00 0.00 3.86
1074 1094 3.473647 CCAGCATCCTCGCCCTCA 61.474 66.667 0.00 0.00 0.00 3.86
1164 1184 1.443407 CTCCTTGGCCGATGACGAT 59.557 57.895 0.00 0.00 42.66 3.73
1170 1190 3.011517 ACCAGCTCCTTGGCCGAT 61.012 61.111 0.00 0.00 42.18 4.18
1239 1259 1.078528 ATCCACCACCGTCTCCTCA 59.921 57.895 0.00 0.00 0.00 3.86
1290 1310 2.215942 TCTCGACCAAGTGATCCTCA 57.784 50.000 0.00 0.00 0.00 3.86
1791 1811 7.708322 TCTTCATACTTCTCATTCTTGGAATCG 59.292 37.037 0.00 0.00 0.00 3.34
1801 1821 5.821470 CACTGCCATCTTCATACTTCTCATT 59.179 40.000 0.00 0.00 0.00 2.57
1888 1908 6.522946 GGGTTACCTTACCATTGATCTCTAC 58.477 44.000 0.00 0.00 40.09 2.59
2007 2027 6.094603 GTCCAAATGCAGTCAGAGTATCAAAT 59.905 38.462 0.00 0.00 37.82 2.32
2406 2428 7.933577 TGCTAGACCAGATGTAGAAAAATATGG 59.066 37.037 0.00 0.00 40.33 2.74
2505 2527 0.037590 AAAACATGTAGAGGCGGGCA 59.962 50.000 0.00 0.00 0.00 5.36
2580 2602 4.582656 TCTCTCTTTAGCTGGAGTATCTGC 59.417 45.833 0.00 0.00 35.49 4.26
2623 2645 6.726764 GTGTTTATCAGTCTCCCTATCCCTAT 59.273 42.308 0.00 0.00 0.00 2.57
2624 2646 6.075984 GTGTTTATCAGTCTCCCTATCCCTA 58.924 44.000 0.00 0.00 0.00 3.53
2625 2647 4.902448 GTGTTTATCAGTCTCCCTATCCCT 59.098 45.833 0.00 0.00 0.00 4.20
2626 2648 4.654262 TGTGTTTATCAGTCTCCCTATCCC 59.346 45.833 0.00 0.00 0.00 3.85
2627 2649 5.740513 GCTGTGTTTATCAGTCTCCCTATCC 60.741 48.000 0.00 0.00 35.60 2.59
2628 2650 5.293560 GCTGTGTTTATCAGTCTCCCTATC 58.706 45.833 0.00 0.00 35.60 2.08
3293 3316 6.870965 ACAAGAGAAGATACAGTACAAAGCTG 59.129 38.462 0.00 0.00 39.67 4.24
3407 3430 9.127006 GCCAAAATTTGCATGGTTAAATTTAAG 57.873 29.630 10.92 1.21 42.46 1.85
3573 3596 8.103935 TCATGACCAATATTTACCTAACACACA 58.896 33.333 0.00 0.00 0.00 3.72
3670 3693 4.825422 TCTACTCCATGCAAGTTCTTCTG 58.175 43.478 4.54 0.00 0.00 3.02
3785 3808 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3786 3809 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3787 3810 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3788 3811 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3789 3812 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3790 3813 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
3791 3814 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
3792 3815 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
3793 3816 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
3794 3817 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
3795 3818 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
3801 3824 8.748412 CCCTTTTATCCATTTTGATGACAAGTA 58.252 33.333 0.00 0.00 37.32 2.24
3802 3825 7.310609 CCCCTTTTATCCATTTTGATGACAAGT 60.311 37.037 0.00 0.00 37.32 3.16
3803 3826 7.043565 CCCCTTTTATCCATTTTGATGACAAG 58.956 38.462 0.00 0.00 37.32 3.16
3804 3827 6.728164 TCCCCTTTTATCCATTTTGATGACAA 59.272 34.615 0.00 0.00 0.00 3.18
3805 3828 6.259893 TCCCCTTTTATCCATTTTGATGACA 58.740 36.000 0.00 0.00 0.00 3.58
3806 3829 6.790232 TCCCCTTTTATCCATTTTGATGAC 57.210 37.500 0.00 0.00 0.00 3.06
3807 3830 6.902416 ACATCCCCTTTTATCCATTTTGATGA 59.098 34.615 0.00 0.00 32.39 2.92
3808 3831 7.128234 ACATCCCCTTTTATCCATTTTGATG 57.872 36.000 0.00 0.00 33.80 3.07
3809 3832 9.093458 GATACATCCCCTTTTATCCATTTTGAT 57.907 33.333 0.00 0.00 0.00 2.57
3810 3833 8.288812 AGATACATCCCCTTTTATCCATTTTGA 58.711 33.333 0.00 0.00 0.00 2.69
3811 3834 8.482852 AGATACATCCCCTTTTATCCATTTTG 57.517 34.615 0.00 0.00 0.00 2.44
3812 3835 9.813826 CTAGATACATCCCCTTTTATCCATTTT 57.186 33.333 0.00 0.00 0.00 1.82
3813 3836 8.394040 CCTAGATACATCCCCTTTTATCCATTT 58.606 37.037 0.00 0.00 0.00 2.32
3814 3837 7.521115 ACCTAGATACATCCCCTTTTATCCATT 59.479 37.037 0.00 0.00 0.00 3.16
3815 3838 7.031917 ACCTAGATACATCCCCTTTTATCCAT 58.968 38.462 0.00 0.00 0.00 3.41
3816 3839 6.272324 CACCTAGATACATCCCCTTTTATCCA 59.728 42.308 0.00 0.00 0.00 3.41
3817 3840 6.272558 ACACCTAGATACATCCCCTTTTATCC 59.727 42.308 0.00 0.00 0.00 2.59
3818 3841 7.317722 ACACCTAGATACATCCCCTTTTATC 57.682 40.000 0.00 0.00 0.00 1.75
3819 3842 8.990693 ATACACCTAGATACATCCCCTTTTAT 57.009 34.615 0.00 0.00 0.00 1.40
3820 3843 8.808240 AATACACCTAGATACATCCCCTTTTA 57.192 34.615 0.00 0.00 0.00 1.52
3821 3844 7.707467 AATACACCTAGATACATCCCCTTTT 57.293 36.000 0.00 0.00 0.00 2.27
3822 3845 7.707467 AAATACACCTAGATACATCCCCTTT 57.293 36.000 0.00 0.00 0.00 3.11
3823 3846 7.707467 AAAATACACCTAGATACATCCCCTT 57.293 36.000 0.00 0.00 0.00 3.95
3824 3847 8.017251 ACTAAAATACACCTAGATACATCCCCT 58.983 37.037 0.00 0.00 0.00 4.79
3825 3848 8.203681 ACTAAAATACACCTAGATACATCCCC 57.796 38.462 0.00 0.00 0.00 4.81
3826 3849 9.708092 GAACTAAAATACACCTAGATACATCCC 57.292 37.037 0.00 0.00 0.00 3.85
3858 3881 9.696917 GTCATCAAAATGGATAAAAAGAGTTGT 57.303 29.630 0.00 0.00 33.42 3.32
3859 3882 9.695526 TGTCATCAAAATGGATAAAAAGAGTTG 57.304 29.630 0.00 0.00 33.42 3.16
3861 3884 9.918630 CTTGTCATCAAAATGGATAAAAAGAGT 57.081 29.630 0.00 0.00 33.42 3.24
3862 3885 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
3870 3893 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
3871 3894 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
3872 3895 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
3873 3896 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
3874 3897 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
3875 3898 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
3876 3899 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
3877 3900 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
3878 3901 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
3879 3902 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
3880 3903 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
3881 3904 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
3882 3905 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3883 3906 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3884 3907 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3885 3908 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
3886 3909 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
3887 3910 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
3888 3911 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3889 3912 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
3890 3913 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
3891 3914 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
3892 3915 0.038744 AAGTACTCCCTCCGTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
3893 3916 0.679002 CAAGTACTCCCTCCGTCCGA 60.679 60.000 0.00 0.00 0.00 4.55
3894 3917 0.964358 ACAAGTACTCCCTCCGTCCG 60.964 60.000 0.00 0.00 0.00 4.79
3895 3918 2.022934 CTACAAGTACTCCCTCCGTCC 58.977 57.143 0.00 0.00 0.00 4.79
3896 3919 2.022934 CCTACAAGTACTCCCTCCGTC 58.977 57.143 0.00 0.00 0.00 4.79
3897 3920 1.637553 TCCTACAAGTACTCCCTCCGT 59.362 52.381 0.00 0.00 0.00 4.69
3898 3921 2.431954 TCCTACAAGTACTCCCTCCG 57.568 55.000 0.00 0.00 0.00 4.63
3899 3922 3.642377 GGATTCCTACAAGTACTCCCTCC 59.358 52.174 0.00 0.00 0.00 4.30
3900 3923 4.548669 AGGATTCCTACAAGTACTCCCTC 58.451 47.826 2.49 0.00 28.47 4.30
3901 3924 4.628661 AGGATTCCTACAAGTACTCCCT 57.371 45.455 2.49 0.00 28.47 4.20
3902 3925 4.470304 ACAAGGATTCCTACAAGTACTCCC 59.530 45.833 5.43 0.00 31.13 4.30
3903 3926 5.678955 ACAAGGATTCCTACAAGTACTCC 57.321 43.478 5.43 0.00 31.13 3.85
3904 3927 8.258708 ACAATACAAGGATTCCTACAAGTACTC 58.741 37.037 5.43 0.00 31.13 2.59
3905 3928 8.041323 CACAATACAAGGATTCCTACAAGTACT 58.959 37.037 5.43 0.00 31.13 2.73
3906 3929 8.038944 TCACAATACAAGGATTCCTACAAGTAC 58.961 37.037 5.43 0.00 31.13 2.73
3907 3930 8.141298 TCACAATACAAGGATTCCTACAAGTA 57.859 34.615 5.43 7.53 31.13 2.24
3908 3931 7.016153 TCACAATACAAGGATTCCTACAAGT 57.984 36.000 5.43 5.57 31.13 3.16
3909 3932 7.607991 AGTTCACAATACAAGGATTCCTACAAG 59.392 37.037 5.43 0.00 31.13 3.16
3979 4006 9.282247 GAACTGCATCAGATTGTTTTATTAGTG 57.718 33.333 0.29 0.00 35.18 2.74
4049 4076 6.543465 CCTGCAGATAATTGATTGGTCAGTTA 59.457 38.462 17.39 0.00 39.76 2.24
4227 4254 7.891732 GTCACGTGACTGGAGATCATCCTTC 62.892 52.000 35.51 8.14 42.19 3.46
4307 4334 1.340889 GCTGTTTTGGTGAAGGATGCA 59.659 47.619 0.00 0.00 0.00 3.96
4308 4335 1.615392 AGCTGTTTTGGTGAAGGATGC 59.385 47.619 0.00 0.00 0.00 3.91
4381 4408 2.093869 TGTTATCAAGACTACGGCCACC 60.094 50.000 2.24 0.00 0.00 4.61
4574 4601 3.300934 CTCGCAGGTGGCAGCAGTA 62.301 63.158 20.04 2.98 45.17 2.74
4670 4697 6.370186 TCATATCATTCCTCTTCTGATGGG 57.630 41.667 0.00 0.00 32.20 4.00
4893 4920 1.281656 GGGCGAAAACCTGTCAACG 59.718 57.895 0.00 0.00 0.00 4.10
5110 5137 3.854784 GCAACAGGAAATTCAGTGTCAGC 60.855 47.826 0.00 3.04 0.00 4.26
5204 5231 3.023119 TGGTTTGCTTCTTTCTGCTCAA 58.977 40.909 0.00 0.00 0.00 3.02
5230 5257 5.220209 CCTTTGCTTCACGTTTTTCTGAAAC 60.220 40.000 1.58 0.00 0.00 2.78
5262 5292 5.879237 TCAGAACTTTTTACAGCACTTGTG 58.121 37.500 0.00 0.00 41.10 3.33
5263 5293 6.498304 CATCAGAACTTTTTACAGCACTTGT 58.502 36.000 0.00 0.00 43.96 3.16
5264 5294 5.400485 GCATCAGAACTTTTTACAGCACTTG 59.600 40.000 0.00 0.00 0.00 3.16
5432 5462 1.826720 CACCATTTGCTATGCCCAAGT 59.173 47.619 0.00 0.00 0.00 3.16
5560 5595 4.335874 CCAGCATTTCCATTCTTCTGAGAG 59.664 45.833 0.00 0.00 32.44 3.20
5633 5668 3.609103 AGTTGCATCGTTGTTCTTCAC 57.391 42.857 0.00 0.00 0.00 3.18
5692 5727 9.880157 AATTACTGGATTCAAAATCAGAATTGG 57.120 29.630 0.00 0.00 35.93 3.16
5880 5915 5.409826 GTGTCCTCCTTATTCTCTTGTGTTG 59.590 44.000 0.00 0.00 0.00 3.33
5896 5931 2.485814 GTCAAGCATTTCTGTGTCCTCC 59.514 50.000 0.00 0.00 0.00 4.30
5978 6013 1.075674 TTGCAGGTGGCCCTTCAAA 60.076 52.632 0.00 0.00 40.43 2.69
6040 6075 2.093075 AGGAGCATTCACATCACCAGAG 60.093 50.000 0.00 0.00 0.00 3.35
6058 6093 2.762887 AGATTCTGTGATTGCTCGAGGA 59.237 45.455 15.58 9.02 0.00 3.71
6109 6144 1.627864 TCTCCGTGTCACCAGATTCA 58.372 50.000 0.00 0.00 0.00 2.57
6144 6179 0.036388 TTCATCAGGACCTGCGGTTC 60.036 55.000 17.33 0.02 35.25 3.62
6178 6213 2.190538 TCTGTGATTGATGGAGAGGCA 58.809 47.619 0.00 0.00 0.00 4.75
6229 6264 2.032071 GGTACGGCAACTGCAGGT 59.968 61.111 19.93 9.19 44.36 4.00
6249 6284 1.358051 ATCATCTGCTGGGCCATCCA 61.358 55.000 6.72 6.78 44.79 3.41
6267 6302 8.701908 ATGTTCTATGATTAATCCTGTTGCAT 57.298 30.769 12.90 8.03 0.00 3.96
6331 6366 2.389715 ACCTCTACAGTATCACCTGGC 58.610 52.381 0.00 0.00 36.75 4.85
6598 6633 5.897824 ACTTTCTGGAGAATTAGGTATCCGA 59.102 40.000 0.00 0.00 34.39 4.55
6783 6834 3.813724 CTGGATCCCCCACAGGCC 61.814 72.222 9.90 0.00 40.82 5.19
6848 6899 1.800805 AGACGTGGAACAATGCTGAG 58.199 50.000 0.00 0.00 44.16 3.35
6863 6914 4.409588 CGTGCACGCGGAAAGACG 62.410 66.667 28.16 7.55 0.00 4.18
6921 6972 7.062956 CGGAACTGGCAGTAATTTTAAATTTCC 59.937 37.037 22.37 17.19 0.00 3.13
6957 7010 8.512138 ACTAGCCTACAAACAAAATATTGACAC 58.488 33.333 0.00 0.00 38.94 3.67
7063 7120 4.379339 TTGAGGCACAAACTGTAAAACC 57.621 40.909 0.00 0.00 35.39 3.27
7095 7152 9.976776 CAGAGGGAGTATAATATAGTCCAACTA 57.023 37.037 26.75 0.00 38.49 2.24
7101 7158 6.543100 CCGGACAGAGGGAGTATAATATAGTC 59.457 46.154 0.00 6.58 0.00 2.59
7110 7167 2.544844 TTTCCGGACAGAGGGAGTAT 57.455 50.000 1.83 0.00 33.01 2.12
7111 7168 2.544844 ATTTCCGGACAGAGGGAGTA 57.455 50.000 1.83 0.00 33.01 2.59
7112 7169 2.108970 GTATTTCCGGACAGAGGGAGT 58.891 52.381 1.83 0.00 33.01 3.85
7113 7170 2.389715 AGTATTTCCGGACAGAGGGAG 58.610 52.381 1.83 0.00 33.01 4.30
7114 7171 2.500098 CAAGTATTTCCGGACAGAGGGA 59.500 50.000 1.83 0.00 0.00 4.20
7115 7172 2.236395 ACAAGTATTTCCGGACAGAGGG 59.764 50.000 1.83 0.00 0.00 4.30
7116 7173 3.056107 TGACAAGTATTTCCGGACAGAGG 60.056 47.826 1.83 0.00 0.00 3.69
7117 7174 4.188247 TGACAAGTATTTCCGGACAGAG 57.812 45.455 1.83 0.00 0.00 3.35
7118 7175 4.221924 TGATGACAAGTATTTCCGGACAGA 59.778 41.667 1.83 0.00 0.00 3.41
7119 7176 4.503910 TGATGACAAGTATTTCCGGACAG 58.496 43.478 1.83 0.00 0.00 3.51
7120 7177 4.545208 TGATGACAAGTATTTCCGGACA 57.455 40.909 1.83 0.00 0.00 4.02
7121 7178 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
7122 7179 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
7123 7180 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
7124 7181 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
7146 7203 9.834628 CCGTTCTAGATACATCTCTCTTTATTC 57.165 37.037 0.00 0.00 38.32 1.75
7147 7204 9.575868 TCCGTTCTAGATACATCTCTCTTTATT 57.424 33.333 0.00 0.00 38.32 1.40
7148 7205 9.575868 TTCCGTTCTAGATACATCTCTCTTTAT 57.424 33.333 0.00 0.00 38.32 1.40
7149 7206 8.975663 TTCCGTTCTAGATACATCTCTCTTTA 57.024 34.615 0.00 0.00 38.32 1.85
7150 7207 7.883391 TTCCGTTCTAGATACATCTCTCTTT 57.117 36.000 0.00 0.00 38.32 2.52
7151 7208 7.883391 TTTCCGTTCTAGATACATCTCTCTT 57.117 36.000 0.00 0.00 38.32 2.85
7152 7209 9.747898 ATATTTCCGTTCTAGATACATCTCTCT 57.252 33.333 0.00 0.00 38.32 3.10
7153 7210 9.781834 CATATTTCCGTTCTAGATACATCTCTC 57.218 37.037 0.00 0.00 38.32 3.20
7154 7211 9.303116 ACATATTTCCGTTCTAGATACATCTCT 57.697 33.333 0.00 0.00 38.32 3.10
7155 7212 9.562583 GACATATTTCCGTTCTAGATACATCTC 57.437 37.037 0.00 0.00 38.32 2.75
7156 7213 9.303116 AGACATATTTCCGTTCTAGATACATCT 57.697 33.333 0.00 0.00 40.86 2.90
7159 7216 9.788889 TCTAGACATATTTCCGTTCTAGATACA 57.211 33.333 0.00 0.00 32.48 2.29
7163 7220 9.788889 TGTATCTAGACATATTTCCGTTCTAGA 57.211 33.333 8.64 8.64 38.94 2.43
7166 7223 8.524487 GGATGTATCTAGACATATTTCCGTTCT 58.476 37.037 0.00 0.00 40.18 3.01
7167 7224 7.760340 GGGATGTATCTAGACATATTTCCGTTC 59.240 40.741 0.00 0.00 40.18 3.95
7168 7225 7.310485 GGGGATGTATCTAGACATATTTCCGTT 60.310 40.741 0.00 0.00 40.18 4.44
7169 7226 6.154706 GGGGATGTATCTAGACATATTTCCGT 59.845 42.308 0.00 0.00 40.18 4.69
7170 7227 6.381420 AGGGGATGTATCTAGACATATTTCCG 59.619 42.308 0.00 0.00 40.18 4.30
7171 7228 7.741554 AGGGGATGTATCTAGACATATTTCC 57.258 40.000 0.00 0.00 40.18 3.13
7176 7233 9.268282 GGATTAAAGGGGATGTATCTAGACATA 57.732 37.037 0.00 0.00 40.18 2.29
7177 7234 7.739444 TGGATTAAAGGGGATGTATCTAGACAT 59.261 37.037 0.00 0.00 42.82 3.06
7178 7235 7.079700 TGGATTAAAGGGGATGTATCTAGACA 58.920 38.462 0.00 0.00 0.00 3.41
7179 7236 7.554959 TGGATTAAAGGGGATGTATCTAGAC 57.445 40.000 0.00 0.00 0.00 2.59
7180 7237 8.757307 AATGGATTAAAGGGGATGTATCTAGA 57.243 34.615 0.00 0.00 0.00 2.43
7181 7238 9.813826 AAAATGGATTAAAGGGGATGTATCTAG 57.186 33.333 0.00 0.00 0.00 2.43
7182 7239 9.586732 CAAAATGGATTAAAGGGGATGTATCTA 57.413 33.333 0.00 0.00 0.00 1.98
7183 7240 8.288812 TCAAAATGGATTAAAGGGGATGTATCT 58.711 33.333 0.00 0.00 0.00 1.98
7184 7241 8.477419 TCAAAATGGATTAAAGGGGATGTATC 57.523 34.615 0.00 0.00 0.00 2.24
7185 7242 8.873144 CATCAAAATGGATTAAAGGGGATGTAT 58.127 33.333 0.00 0.00 0.00 2.29
7186 7243 8.064389 TCATCAAAATGGATTAAAGGGGATGTA 58.936 33.333 0.00 0.00 33.42 2.29
7187 7244 6.902416 TCATCAAAATGGATTAAAGGGGATGT 59.098 34.615 0.00 0.00 33.42 3.06
7188 7245 7.147689 TGTCATCAAAATGGATTAAAGGGGATG 60.148 37.037 0.00 0.00 33.42 3.51
7189 7246 6.902416 TGTCATCAAAATGGATTAAAGGGGAT 59.098 34.615 0.00 0.00 33.42 3.85
7190 7247 6.259893 TGTCATCAAAATGGATTAAAGGGGA 58.740 36.000 0.00 0.00 33.42 4.81
7191 7248 6.543430 TGTCATCAAAATGGATTAAAGGGG 57.457 37.500 0.00 0.00 33.42 4.79
7192 7249 7.614494 ACTTGTCATCAAAATGGATTAAAGGG 58.386 34.615 0.00 0.00 33.42 3.95
7198 7255 9.357652 CGAAAATACTTGTCATCAAAATGGATT 57.642 29.630 0.00 0.00 33.42 3.01
7199 7256 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
7200 7257 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
7201 7258 7.312154 TCCGAAAATACTTGTCATCAAAATGG 58.688 34.615 0.00 0.00 33.42 3.16
7202 7259 8.741101 TTCCGAAAATACTTGTCATCAAAATG 57.259 30.769 0.00 0.00 32.87 2.32
7203 7260 8.576442 ACTTCCGAAAATACTTGTCATCAAAAT 58.424 29.630 0.00 0.00 32.87 1.82
7204 7261 7.936584 ACTTCCGAAAATACTTGTCATCAAAA 58.063 30.769 0.00 0.00 32.87 2.44
7205 7262 7.504924 ACTTCCGAAAATACTTGTCATCAAA 57.495 32.000 0.00 0.00 32.87 2.69
7206 7263 7.333423 CCTACTTCCGAAAATACTTGTCATCAA 59.667 37.037 0.00 0.00 0.00 2.57
7207 7264 6.816640 CCTACTTCCGAAAATACTTGTCATCA 59.183 38.462 0.00 0.00 0.00 3.07
7208 7265 7.039882 TCCTACTTCCGAAAATACTTGTCATC 58.960 38.462 0.00 0.00 0.00 2.92
7209 7266 6.942976 TCCTACTTCCGAAAATACTTGTCAT 58.057 36.000 0.00 0.00 0.00 3.06
7210 7267 6.349243 TCCTACTTCCGAAAATACTTGTCA 57.651 37.500 0.00 0.00 0.00 3.58
7211 7268 6.872547 ACTTCCTACTTCCGAAAATACTTGTC 59.127 38.462 0.00 0.00 0.00 3.18
7212 7269 6.766429 ACTTCCTACTTCCGAAAATACTTGT 58.234 36.000 0.00 0.00 0.00 3.16
7213 7270 7.386848 TCAACTTCCTACTTCCGAAAATACTTG 59.613 37.037 0.00 0.00 0.00 3.16
7214 7271 7.447594 TCAACTTCCTACTTCCGAAAATACTT 58.552 34.615 0.00 0.00 0.00 2.24
7215 7272 7.001099 TCAACTTCCTACTTCCGAAAATACT 57.999 36.000 0.00 0.00 0.00 2.12
7216 7273 7.845066 ATCAACTTCCTACTTCCGAAAATAC 57.155 36.000 0.00 0.00 0.00 1.89
7217 7274 9.374838 GTAATCAACTTCCTACTTCCGAAAATA 57.625 33.333 0.00 0.00 0.00 1.40
7218 7275 7.064253 CGTAATCAACTTCCTACTTCCGAAAAT 59.936 37.037 0.00 0.00 0.00 1.82
7219 7276 6.366877 CGTAATCAACTTCCTACTTCCGAAAA 59.633 38.462 0.00 0.00 0.00 2.29
7220 7277 5.865552 CGTAATCAACTTCCTACTTCCGAAA 59.134 40.000 0.00 0.00 0.00 3.46
7221 7278 5.047802 ACGTAATCAACTTCCTACTTCCGAA 60.048 40.000 0.00 0.00 0.00 4.30
7222 7279 4.460382 ACGTAATCAACTTCCTACTTCCGA 59.540 41.667 0.00 0.00 0.00 4.55
7223 7280 4.561606 CACGTAATCAACTTCCTACTTCCG 59.438 45.833 0.00 0.00 0.00 4.30
7224 7281 4.868734 CCACGTAATCAACTTCCTACTTCC 59.131 45.833 0.00 0.00 0.00 3.46
7225 7282 5.575995 GTCCACGTAATCAACTTCCTACTTC 59.424 44.000 0.00 0.00 0.00 3.01
7226 7283 5.011329 TGTCCACGTAATCAACTTCCTACTT 59.989 40.000 0.00 0.00 0.00 2.24
7227 7284 4.525487 TGTCCACGTAATCAACTTCCTACT 59.475 41.667 0.00 0.00 0.00 2.57
7255 7312 6.388619 AATGGAGGGAGTAATACTGTTGTT 57.611 37.500 0.00 0.00 0.00 2.83
7318 7375 8.977412 TGTAGATTCACTCATTTACTCCATACA 58.023 33.333 0.00 0.00 0.00 2.29
7319 7376 9.250624 GTGTAGATTCACTCATTTACTCCATAC 57.749 37.037 0.00 0.00 35.68 2.39
7322 7379 7.482169 AGTGTAGATTCACTCATTTACTCCA 57.518 36.000 0.00 0.00 44.07 3.86
7355 7415 8.520351 CCGACTACAAATGGATGTATATAGACA 58.480 37.037 2.07 2.07 35.37 3.41
7364 7424 3.973206 TCACCGACTACAAATGGATGT 57.027 42.857 0.00 0.00 37.32 3.06
7393 7453 6.128526 CCTCAGTTTCGAAATACAAGTCCTTC 60.129 42.308 14.69 0.00 0.00 3.46
7402 7462 5.963594 AGTACTCCCTCAGTTTCGAAATAC 58.036 41.667 14.69 8.86 36.43 1.89
7408 7468 4.985538 ATGTAGTACTCCCTCAGTTTCG 57.014 45.455 0.00 0.00 36.43 3.46
7414 7474 8.375493 AGTTTGATAAATGTAGTACTCCCTCA 57.625 34.615 0.00 0.00 0.00 3.86
7436 7496 6.187727 TCTTCCCTTTAGTGACATCAAGTT 57.812 37.500 0.00 0.00 0.00 2.66
7444 7591 5.407691 CCTACGTTTTCTTCCCTTTAGTGAC 59.592 44.000 0.00 0.00 0.00 3.67
7453 7600 6.430308 AGAAATTCTTCCTACGTTTTCTTCCC 59.570 38.462 0.00 0.00 31.30 3.97
7543 7695 4.530710 AAATTGCATGTGAATCAGCTGT 57.469 36.364 14.67 0.00 0.00 4.40
7647 7831 2.806244 GTCGTTGTGCCACTATTTCTGT 59.194 45.455 0.00 0.00 0.00 3.41
7655 7839 4.539083 TGCGGTCGTTGTGCCACT 62.539 61.111 0.00 0.00 0.00 4.00
7707 7891 1.471287 GCCTAACCCCGACAATGTTTC 59.529 52.381 0.00 0.00 0.00 2.78
7708 7892 1.074889 AGCCTAACCCCGACAATGTTT 59.925 47.619 0.00 0.00 0.00 2.83
7709 7893 0.696501 AGCCTAACCCCGACAATGTT 59.303 50.000 0.00 0.00 0.00 2.71
7710 7894 0.696501 AAGCCTAACCCCGACAATGT 59.303 50.000 0.00 0.00 0.00 2.71
7711 7895 1.094785 CAAGCCTAACCCCGACAATG 58.905 55.000 0.00 0.00 0.00 2.82
7712 7896 0.696501 ACAAGCCTAACCCCGACAAT 59.303 50.000 0.00 0.00 0.00 2.71
7713 7897 1.002315 GTACAAGCCTAACCCCGACAA 59.998 52.381 0.00 0.00 0.00 3.18
7719 7917 0.900421 ACGGAGTACAAGCCTAACCC 59.100 55.000 0.00 0.00 41.94 4.11
7843 8041 9.393512 ACGAACACTATTAGTTATACTCTCTGT 57.606 33.333 0.00 0.00 0.00 3.41
7893 8091 6.525976 ACACTACTTTAACGATCTAAACGCTC 59.474 38.462 0.00 0.00 0.00 5.03
7946 8144 1.059913 AGCCCTTTGCACTGTACTCT 58.940 50.000 0.00 0.00 44.83 3.24
7947 8145 1.897560 AAGCCCTTTGCACTGTACTC 58.102 50.000 0.00 0.00 44.83 2.59
7954 8152 0.328258 TCTCCCTAAGCCCTTTGCAC 59.672 55.000 0.00 0.00 44.83 4.57
7962 8160 2.693267 ACGAAACATCTCCCTAAGCC 57.307 50.000 0.00 0.00 0.00 4.35
8012 8210 7.584108 TCAGTGTTTATTTACAAGCACTCATG 58.416 34.615 2.85 0.00 43.79 3.07
8013 8211 7.744087 TCAGTGTTTATTTACAAGCACTCAT 57.256 32.000 2.85 0.00 43.79 2.90
8014 8212 7.584108 CATCAGTGTTTATTTACAAGCACTCA 58.416 34.615 2.85 0.00 43.79 3.41
8015 8213 6.524586 GCATCAGTGTTTATTTACAAGCACTC 59.475 38.462 2.85 0.00 43.79 3.51
8035 8233 8.635765 AGAATAAACCAGTTCTTTAAGCATCA 57.364 30.769 0.00 0.00 30.84 3.07
8037 8235 8.870075 AGAGAATAAACCAGTTCTTTAAGCAT 57.130 30.769 0.00 0.00 34.97 3.79
8046 8244 8.088981 TGAAGTGACTAGAGAATAAACCAGTTC 58.911 37.037 0.00 0.00 34.86 3.01
8079 8278 5.646692 AAGGGCTTCTATAATGCAAGGTA 57.353 39.130 0.00 0.00 0.00 3.08
8186 8413 9.530129 CTTGACGTATTTGACAGAATAGTTTTC 57.470 33.333 0.00 0.00 0.00 2.29
8189 8416 7.331193 GTCCTTGACGTATTTGACAGAATAGTT 59.669 37.037 0.00 0.00 0.00 2.24
8223 8450 6.561614 TCGAAGCTTACGAATAAAGTCAGAT 58.438 36.000 15.48 0.00 36.84 2.90
8243 8470 4.436242 AAGTGTTTATCTCTCGCTCGAA 57.564 40.909 0.00 0.00 0.00 3.71
8258 8485 4.370364 ACTTTTGTCGATGCAAAGTGTT 57.630 36.364 15.06 0.00 39.20 3.32
8277 8504 3.873801 GCCTTGTGGTGGAATGTCATACT 60.874 47.826 0.00 0.00 35.27 2.12
8278 8505 2.423538 GCCTTGTGGTGGAATGTCATAC 59.576 50.000 0.00 0.00 35.27 2.39
8279 8506 2.040947 TGCCTTGTGGTGGAATGTCATA 59.959 45.455 0.00 0.00 35.27 2.15
8314 8542 1.607467 CCTTTGGTGCCTCCCCTTG 60.607 63.158 0.00 0.00 34.77 3.61
8390 8618 3.341823 ACAGAGATGTTCAATGTCCAGC 58.658 45.455 0.00 0.00 0.00 4.85
8391 8619 5.482006 TGTACAGAGATGTTCAATGTCCAG 58.518 41.667 0.00 0.00 0.00 3.86
8524 8752 7.171508 TGTGAATCCACTCTAATCGAATATTGC 59.828 37.037 0.00 0.00 43.55 3.56
8708 10503 6.766429 TCTAAACTAAAGAAAGAGGGGTGTC 58.234 40.000 0.00 0.00 0.00 3.67
8710 10505 6.770542 ACTCTAAACTAAAGAAAGAGGGGTG 58.229 40.000 0.00 0.00 38.38 4.61
8726 10521 3.991121 GGTGCAGAGACTCAACTCTAAAC 59.009 47.826 5.02 0.00 44.18 2.01
8733 10588 2.763448 AGGATAGGTGCAGAGACTCAAC 59.237 50.000 5.02 0.00 0.00 3.18
8828 10683 8.052141 TCAAAATTCAAAGAAACCCTGGAATTT 58.948 29.630 0.00 0.00 43.70 1.82
8887 10742 6.386050 TCCCTAGAAACCTTAATAGTGAAGGG 59.614 42.308 6.39 0.00 46.68 3.95
8948 10807 4.580580 AGGTCAACTAGCAAGTTTCTTTGG 59.419 41.667 0.00 0.00 43.60 3.28
8988 10847 3.521126 CAAGGGATCTCTTCTCTTCCCAA 59.479 47.826 4.37 0.00 41.59 4.12
9011 10870 4.861203 TTGCCCAGGCTGCAAATA 57.139 50.000 9.56 0.00 45.11 1.40
9017 10876 3.292481 ATCACCCTTGCCCAGGCTG 62.292 63.158 7.75 7.75 42.29 4.85
9043 10902 4.070716 AGCTTGACCATCACTTTCTTCAG 58.929 43.478 0.00 0.00 0.00 3.02
9078 10937 1.134228 ACTCCCGTTTGTAGGTGGTT 58.866 50.000 0.00 0.00 0.00 3.67
9159 11023 6.899393 TTGAAAATGCAGGAGTCAAAGTAT 57.101 33.333 0.00 0.00 0.00 2.12
9186 11050 6.367969 CACAACAGGTGTAGGAGTTTGTATAC 59.632 42.308 0.00 0.00 42.75 1.47
9215 11079 2.611225 AGCATAGCTTCAGTAGGTGC 57.389 50.000 0.00 0.00 33.89 5.01
9220 11084 4.264253 ACAATGCAAGCATAGCTTCAGTA 58.736 39.130 8.12 0.00 46.77 2.74
9221 11085 3.087031 ACAATGCAAGCATAGCTTCAGT 58.913 40.909 8.12 0.64 46.77 3.41
9275 11140 4.141233 GCAGGGGAAATGCAAACAATAT 57.859 40.909 0.00 0.00 43.31 1.28
9318 11183 2.507484 CACAACTGAGATCCCAAAGCA 58.493 47.619 0.00 0.00 0.00 3.91
9436 11301 6.183361 ACCCTCTTTGGTAGGAAAAACACTAT 60.183 38.462 0.00 0.00 36.67 2.12
9450 11315 3.203040 CCAGGAATGATACCCTCTTTGGT 59.797 47.826 0.00 0.00 42.62 3.67
9509 11374 3.321648 ACCCACATGCTCCGCTCA 61.322 61.111 0.00 0.00 0.00 4.26
9515 11380 3.444742 TCATTCAAATCACCCACATGCTC 59.555 43.478 0.00 0.00 0.00 4.26
9536 11401 9.723601 ATCAAGAATATTATCAGGCTCTTCTTC 57.276 33.333 0.00 0.00 31.14 2.87
9583 11448 7.633789 ACTGTGGTATATCAATTCTGAAACCT 58.366 34.615 0.00 0.00 35.48 3.50
9618 11483 2.029918 GTCCTTTTGCCAAGATCGCTTT 60.030 45.455 0.00 0.00 30.14 3.51
9625 11490 5.197451 TCTTTACAAGTCCTTTTGCCAAGA 58.803 37.500 0.00 0.00 31.81 3.02
9640 11505 7.112122 AGATGATATGCACCTGTTCTTTACAA 58.888 34.615 0.00 0.00 36.02 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.