Multiple sequence alignment - TraesCS3B01G265700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G265700 chr3B 100.000 6029 0 0 1 6029 425682536 425676508 0.000000e+00 11134.0
1 TraesCS3B01G265700 chr3B 89.855 552 42 5 1 538 52660659 52661210 0.000000e+00 697.0
2 TraesCS3B01G265700 chr3B 88.532 218 16 3 56 264 116194259 116194476 7.750000e-64 255.0
3 TraesCS3B01G265700 chr3B 91.429 70 6 0 1117 1186 228203639 228203708 4.970000e-16 97.1
4 TraesCS3B01G265700 chr3D 95.663 2882 89 19 738 3608 328519568 328516712 0.000000e+00 4597.0
5 TraesCS3B01G265700 chr3D 96.588 1612 29 12 3767 5355 328516713 328515105 0.000000e+00 2649.0
6 TraesCS3B01G265700 chr3D 90.592 574 29 6 5465 6015 328514849 328514278 0.000000e+00 737.0
7 TraesCS3B01G265700 chr3D 92.025 163 13 0 3606 3768 187836470 187836308 4.700000e-56 230.0
8 TraesCS3B01G265700 chr3D 93.976 83 4 1 5933 6015 328514091 328514010 2.280000e-24 124.0
9 TraesCS3B01G265700 chr3D 87.500 80 8 2 1109 1186 157096803 157096882 2.310000e-14 91.6
10 TraesCS3B01G265700 chr3D 91.667 48 3 1 2917 2964 586960156 586960110 1.400000e-06 65.8
11 TraesCS3B01G265700 chr3A 93.099 2898 120 39 739 3608 443122966 443120121 0.000000e+00 4170.0
12 TraesCS3B01G265700 chr3A 94.665 1612 39 10 3767 5355 443120122 443118535 0.000000e+00 2457.0
13 TraesCS3B01G265700 chr3A 88.737 586 38 9 5465 6027 443094367 443093787 0.000000e+00 691.0
14 TraesCS3B01G265700 chr3A 90.562 445 24 3 214 649 443123458 443123023 1.880000e-159 573.0
15 TraesCS3B01G265700 chr3A 90.769 260 21 2 1 259 82443798 82444055 1.610000e-90 344.0
16 TraesCS3B01G265700 chr3A 92.025 163 13 0 3606 3768 238686209 238686371 4.700000e-56 230.0
17 TraesCS3B01G265700 chr3A 92.661 109 5 1 650 755 443123088 443122980 2.910000e-33 154.0
18 TraesCS3B01G265700 chr3A 92.308 104 8 0 65 168 443123559 443123456 1.350000e-31 148.0
19 TraesCS3B01G265700 chr3A 97.059 68 2 0 1 68 443172303 443172236 1.370000e-21 115.0
20 TraesCS3B01G265700 chr3A 91.429 70 6 0 1117 1186 171179650 171179581 4.970000e-16 97.1
21 TraesCS3B01G265700 chrUn 89.674 552 43 5 1 538 16712417 16711866 0.000000e+00 691.0
22 TraesCS3B01G265700 chr1B 84.310 478 48 11 123 591 489208238 489207779 5.550000e-120 442.0
23 TraesCS3B01G265700 chr4A 86.688 308 35 5 5536 5839 731618942 731619247 2.690000e-88 337.0
24 TraesCS3B01G265700 chr6D 86.567 268 33 2 5588 5855 468245000 468244736 5.910000e-75 292.0
25 TraesCS3B01G265700 chr6D 81.893 243 23 6 5541 5782 112955589 112955367 1.030000e-42 185.0
26 TraesCS3B01G265700 chr2D 85.878 262 36 1 5579 5839 88755628 88755889 1.650000e-70 278.0
27 TraesCS3B01G265700 chr7B 91.411 163 14 0 3607 3769 102234478 102234316 2.190000e-54 224.0
28 TraesCS3B01G265700 chr7B 91.379 116 10 0 5724 5839 19950749 19950864 6.250000e-35 159.0
29 TraesCS3B01G265700 chr5D 90.533 169 14 2 3606 3773 12270339 12270506 7.860000e-54 222.0
30 TraesCS3B01G265700 chr5D 100.000 29 0 0 2926 2954 317386500 317386472 3.000000e-03 54.7
31 TraesCS3B01G265700 chr4D 90.964 166 14 1 3604 3768 64390467 64390632 7.860000e-54 222.0
32 TraesCS3B01G265700 chr5A 90.058 171 15 2 3606 3775 320214406 320214237 2.830000e-53 220.0
33 TraesCS3B01G265700 chr6B 89.080 174 19 0 3603 3776 36133500 36133673 3.660000e-52 217.0
34 TraesCS3B01G265700 chr4B 89.881 168 17 0 3607 3774 586319223 586319056 3.660000e-52 217.0
35 TraesCS3B01G265700 chr1D 87.634 186 18 5 3604 3787 324412225 324412407 1.700000e-50 211.0
36 TraesCS3B01G265700 chr1D 100.000 29 0 0 2926 2954 68242002 68242030 3.000000e-03 54.7
37 TraesCS3B01G265700 chr6A 92.593 54 3 1 5708 5761 140730419 140730367 6.480000e-10 76.8
38 TraesCS3B01G265700 chr6A 94.000 50 3 0 5608 5657 140730486 140730437 6.480000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G265700 chr3B 425676508 425682536 6028 True 11134.00 11134 100.00000 1 6029 1 chr3B.!!$R1 6028
1 TraesCS3B01G265700 chr3B 52660659 52661210 551 False 697.00 697 89.85500 1 538 1 chr3B.!!$F1 537
2 TraesCS3B01G265700 chr3D 328514010 328519568 5558 True 2026.75 4597 94.20475 738 6015 4 chr3D.!!$R3 5277
3 TraesCS3B01G265700 chr3A 443118535 443123559 5024 True 1500.40 4170 92.65900 65 5355 5 chr3A.!!$R4 5290
4 TraesCS3B01G265700 chr3A 443093787 443094367 580 True 691.00 691 88.73700 5465 6027 1 chr3A.!!$R2 562
5 TraesCS3B01G265700 chrUn 16711866 16712417 551 True 691.00 691 89.67400 1 538 1 chrUn.!!$R1 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
599 614 0.462759 GCCTCTGTATCAGGTGGCAC 60.463 60.000 9.70 9.70 44.28 5.01 F
1181 1230 0.099082 GTCGAGATGGACGGTCAGAC 59.901 60.000 10.76 5.61 0.00 3.51 F
1325 1376 0.179124 CTAGCTGTCGTTCTGCTCCC 60.179 60.000 14.70 0.00 45.82 4.30 F
2911 2986 1.197036 GCCCTGCTTTCGTACAACTTC 59.803 52.381 0.00 0.00 0.00 3.01 F
3391 3470 1.974236 GAGGTACTGCTATGCCTGGAT 59.026 52.381 0.00 0.00 41.55 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1619 1683 0.462047 CACTGGCTACGATTGGACCC 60.462 60.000 0.00 0.00 0.00 4.46 R
3094 3172 0.768221 TGCCAGGTCCCTTGAGAACT 60.768 55.000 0.00 0.00 32.65 3.01 R
3127 3205 2.931325 TGATTATGCAACCGTACCGAAC 59.069 45.455 0.00 0.00 0.00 3.95 R
3742 3821 2.434702 CCCTCCGTTCCTAAATAGCAGT 59.565 50.000 0.00 0.00 0.00 4.40 R
5116 5239 2.156343 AAGCTCGTTCTGTTCAGGAC 57.844 50.000 1.43 1.43 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.471702 GATCATGAATAGTATCAATTCCCCATT 57.528 33.333 0.00 0.00 33.28 3.16
47 48 8.837099 AATAGTATCAATTCCCCATTTGACAA 57.163 30.769 0.00 0.00 34.87 3.18
57 58 3.008266 CCCCATTTGACAAAAGCCTGAAT 59.992 43.478 4.41 0.00 0.00 2.57
58 59 3.998341 CCCATTTGACAAAAGCCTGAATG 59.002 43.478 4.41 0.00 0.00 2.67
93 94 2.509548 CCCCATGTCTCCTATTGTTCCA 59.490 50.000 0.00 0.00 0.00 3.53
162 166 5.067805 GTGATTCTGGAACTTCCTTGTTGTT 59.932 40.000 9.31 0.00 37.46 2.83
200 204 6.380846 AGCTCAAGAGTCTAGATGAAGAACAT 59.619 38.462 0.00 0.00 42.47 2.71
208 212 8.945481 AGTCTAGATGAAGAACATGAATTCTG 57.055 34.615 7.05 5.30 38.95 3.02
308 323 5.561532 CGCAATCCTCGCAAAATGATATCTT 60.562 40.000 3.98 0.00 0.00 2.40
331 346 3.190079 TCAATATGACGCTTCTGCAGAC 58.810 45.455 18.03 4.92 39.64 3.51
368 383 4.149598 ACAAATTTGTGAGTAACCCTCCC 58.850 43.478 22.71 0.00 40.49 4.30
477 492 5.238214 ACTCTCATTTTGTCTCTTCAACTGC 59.762 40.000 0.00 0.00 0.00 4.40
538 553 4.083110 CCAATTTATCATGCTTCTAGGCCG 60.083 45.833 0.00 0.00 0.00 6.13
542 557 1.485124 TCATGCTTCTAGGCCGAGAA 58.515 50.000 24.66 24.66 34.30 2.87
574 589 4.632153 CATATGCCCCACAGTAACTCTAC 58.368 47.826 0.00 0.00 0.00 2.59
599 614 0.462759 GCCTCTGTATCAGGTGGCAC 60.463 60.000 9.70 9.70 44.28 5.01
640 655 4.971282 TCACTCTATCCCAATCACCATTCT 59.029 41.667 0.00 0.00 0.00 2.40
641 656 5.070981 TCACTCTATCCCAATCACCATTCTC 59.929 44.000 0.00 0.00 0.00 2.87
642 657 4.349342 ACTCTATCCCAATCACCATTCTCC 59.651 45.833 0.00 0.00 0.00 3.71
643 658 4.570926 TCTATCCCAATCACCATTCTCCT 58.429 43.478 0.00 0.00 0.00 3.69
644 659 3.589951 ATCCCAATCACCATTCTCCTG 57.410 47.619 0.00 0.00 0.00 3.86
645 660 2.561187 TCCCAATCACCATTCTCCTGA 58.439 47.619 0.00 0.00 0.00 3.86
646 661 3.125656 TCCCAATCACCATTCTCCTGAT 58.874 45.455 0.00 0.00 0.00 2.90
647 662 3.137176 TCCCAATCACCATTCTCCTGATC 59.863 47.826 0.00 0.00 0.00 2.92
648 663 3.117776 CCCAATCACCATTCTCCTGATCA 60.118 47.826 0.00 0.00 0.00 2.92
649 664 4.447325 CCCAATCACCATTCTCCTGATCAT 60.447 45.833 0.00 0.00 0.00 2.45
650 665 4.760715 CCAATCACCATTCTCCTGATCATC 59.239 45.833 0.00 0.00 0.00 2.92
651 666 5.456330 CCAATCACCATTCTCCTGATCATCT 60.456 44.000 0.00 0.00 0.00 2.90
652 667 4.684484 TCACCATTCTCCTGATCATCTG 57.316 45.455 0.00 0.00 0.00 2.90
653 668 4.035814 TCACCATTCTCCTGATCATCTGT 58.964 43.478 0.00 0.00 0.00 3.41
654 669 5.211201 TCACCATTCTCCTGATCATCTGTA 58.789 41.667 0.00 0.00 0.00 2.74
655 670 5.842874 TCACCATTCTCCTGATCATCTGTAT 59.157 40.000 0.00 0.00 0.00 2.29
656 671 5.932883 CACCATTCTCCTGATCATCTGTATG 59.067 44.000 0.00 0.00 0.00 2.39
657 672 5.842874 ACCATTCTCCTGATCATCTGTATGA 59.157 40.000 0.00 0.00 46.01 2.15
658 673 6.014413 ACCATTCTCCTGATCATCTGTATGAG 60.014 42.308 0.00 0.00 45.17 2.90
659 674 6.399743 CATTCTCCTGATCATCTGTATGAGG 58.600 44.000 0.00 0.00 45.17 3.86
660 675 5.072129 TCTCCTGATCATCTGTATGAGGT 57.928 43.478 0.00 0.00 45.17 3.85
661 676 4.831710 TCTCCTGATCATCTGTATGAGGTG 59.168 45.833 0.00 0.00 45.17 4.00
662 677 3.899980 TCCTGATCATCTGTATGAGGTGG 59.100 47.826 0.00 0.00 45.17 4.61
663 678 3.556633 CCTGATCATCTGTATGAGGTGGC 60.557 52.174 0.00 0.00 45.17 5.01
664 679 3.040477 TGATCATCTGTATGAGGTGGCA 58.960 45.455 0.00 0.00 45.17 4.92
665 680 2.988010 TCATCTGTATGAGGTGGCAC 57.012 50.000 9.70 9.70 37.20 5.01
666 681 2.187100 TCATCTGTATGAGGTGGCACA 58.813 47.619 20.82 0.00 37.20 4.57
667 682 2.571202 TCATCTGTATGAGGTGGCACAA 59.429 45.455 20.82 4.57 37.35 3.33
668 683 3.008923 TCATCTGTATGAGGTGGCACAAA 59.991 43.478 20.82 4.17 37.35 2.83
669 684 3.500448 TCTGTATGAGGTGGCACAAAA 57.500 42.857 20.82 3.77 44.16 2.44
670 685 4.032960 TCTGTATGAGGTGGCACAAAAT 57.967 40.909 20.82 11.24 44.16 1.82
671 686 4.406456 TCTGTATGAGGTGGCACAAAATT 58.594 39.130 20.82 2.35 44.16 1.82
672 687 4.832266 TCTGTATGAGGTGGCACAAAATTT 59.168 37.500 20.82 1.25 44.16 1.82
673 688 4.880759 TGTATGAGGTGGCACAAAATTTG 58.119 39.130 20.82 3.89 44.16 2.32
674 689 2.237393 TGAGGTGGCACAAAATTTGC 57.763 45.000 20.82 0.00 44.16 3.68
683 698 4.880886 GCACAAAATTTGCCTCAACTTT 57.119 36.364 5.52 0.00 33.58 2.66
684 699 4.836455 GCACAAAATTTGCCTCAACTTTC 58.164 39.130 5.52 0.00 33.58 2.62
685 700 4.332268 GCACAAAATTTGCCTCAACTTTCA 59.668 37.500 5.52 0.00 33.58 2.69
686 701 5.727515 GCACAAAATTTGCCTCAACTTTCAC 60.728 40.000 5.52 0.00 33.58 3.18
687 702 5.581874 CACAAAATTTGCCTCAACTTTCACT 59.418 36.000 5.52 0.00 28.65 3.41
688 703 5.812127 ACAAAATTTGCCTCAACTTTCACTC 59.188 36.000 5.52 0.00 28.65 3.51
689 704 5.859205 AAATTTGCCTCAACTTTCACTCT 57.141 34.783 0.00 0.00 0.00 3.24
690 705 6.959639 AAATTTGCCTCAACTTTCACTCTA 57.040 33.333 0.00 0.00 0.00 2.43
691 706 7.530426 AAATTTGCCTCAACTTTCACTCTAT 57.470 32.000 0.00 0.00 0.00 1.98
692 707 6.749923 ATTTGCCTCAACTTTCACTCTATC 57.250 37.500 0.00 0.00 0.00 2.08
693 708 3.849911 TGCCTCAACTTTCACTCTATCG 58.150 45.455 0.00 0.00 0.00 2.92
694 709 2.605366 GCCTCAACTTTCACTCTATCGC 59.395 50.000 0.00 0.00 0.00 4.58
695 710 3.849911 CCTCAACTTTCACTCTATCGCA 58.150 45.455 0.00 0.00 0.00 5.10
696 711 4.245660 CCTCAACTTTCACTCTATCGCAA 58.754 43.478 0.00 0.00 0.00 4.85
697 712 4.872691 CCTCAACTTTCACTCTATCGCAAT 59.127 41.667 0.00 0.00 0.00 3.56
698 713 5.006165 CCTCAACTTTCACTCTATCGCAATC 59.994 44.000 0.00 0.00 0.00 2.67
699 714 5.478407 TCAACTTTCACTCTATCGCAATCA 58.522 37.500 0.00 0.00 0.00 2.57
700 715 5.348724 TCAACTTTCACTCTATCGCAATCAC 59.651 40.000 0.00 0.00 0.00 3.06
701 716 4.184629 ACTTTCACTCTATCGCAATCACC 58.815 43.478 0.00 0.00 0.00 4.02
702 717 3.885724 TTCACTCTATCGCAATCACCA 57.114 42.857 0.00 0.00 0.00 4.17
703 718 4.406648 TTCACTCTATCGCAATCACCAT 57.593 40.909 0.00 0.00 0.00 3.55
704 719 4.406648 TCACTCTATCGCAATCACCATT 57.593 40.909 0.00 0.00 0.00 3.16
705 720 4.371786 TCACTCTATCGCAATCACCATTC 58.628 43.478 0.00 0.00 0.00 2.67
732 747 1.280133 TCAATGAGCTCTTCCACCAGG 59.720 52.381 16.19 0.00 0.00 4.45
1082 1131 4.047125 CCACCAACCTGCCCCGAT 62.047 66.667 0.00 0.00 0.00 4.18
1181 1230 0.099082 GTCGAGATGGACGGTCAGAC 59.901 60.000 10.76 5.61 0.00 3.51
1206 1255 2.294078 CCCACTCCCACTCCCACTC 61.294 68.421 0.00 0.00 0.00 3.51
1256 1305 2.412870 TGCCGATATAAACGATGCCTG 58.587 47.619 0.00 0.00 0.00 4.85
1282 1331 3.442273 TGAATTTTGTATTCTGGTCGGGC 59.558 43.478 0.00 0.00 0.00 6.13
1283 1332 1.828979 TTTTGTATTCTGGTCGGGCC 58.171 50.000 0.00 0.00 37.90 5.80
1325 1376 0.179124 CTAGCTGTCGTTCTGCTCCC 60.179 60.000 14.70 0.00 45.82 4.30
1326 1377 1.934220 TAGCTGTCGTTCTGCTCCCG 61.934 60.000 14.70 0.00 45.82 5.14
1327 1378 2.651361 CTGTCGTTCTGCTCCCGT 59.349 61.111 0.00 0.00 0.00 5.28
1332 1383 2.137523 GTCGTTCTGCTCCCGTTTTTA 58.862 47.619 0.00 0.00 0.00 1.52
1335 1386 3.000727 CGTTCTGCTCCCGTTTTTATCT 58.999 45.455 0.00 0.00 0.00 1.98
1336 1387 3.062234 CGTTCTGCTCCCGTTTTTATCTC 59.938 47.826 0.00 0.00 0.00 2.75
1337 1388 4.254492 GTTCTGCTCCCGTTTTTATCTCT 58.746 43.478 0.00 0.00 0.00 3.10
1338 1389 5.416947 GTTCTGCTCCCGTTTTTATCTCTA 58.583 41.667 0.00 0.00 0.00 2.43
1346 1400 7.518529 GCTCCCGTTTTTATCTCTAATAACTGC 60.519 40.741 0.00 0.00 30.85 4.40
1382 1446 5.761234 GTCTCTGATCTATCTCCGTAGTTGT 59.239 44.000 0.00 0.00 0.00 3.32
1467 1531 1.209504 ACACCTTGGGTACGATCATGG 59.790 52.381 0.00 10.65 32.11 3.66
1478 1542 4.750098 GGTACGATCATGGTTGTCTATTGG 59.250 45.833 0.88 0.00 0.00 3.16
1501 1565 2.840753 GGGAAGGTGCAGGGTTGGA 61.841 63.158 0.00 0.00 0.00 3.53
1504 1568 4.643387 AGGTGCAGGGTTGGACGC 62.643 66.667 0.00 0.00 45.63 5.19
1531 1595 4.569943 TGCTGGTGAAATAGTTCTGTCTC 58.430 43.478 4.35 0.00 34.60 3.36
1536 1600 4.386049 GGTGAAATAGTTCTGTCTCACGTG 59.614 45.833 9.94 9.94 35.19 4.49
1619 1683 3.654365 CGATTGCTTCGCGCTTTG 58.346 55.556 5.56 0.00 41.69 2.77
1662 1726 1.399089 CATGTCTGCATCGCATGTTGA 59.601 47.619 13.71 0.00 38.13 3.18
1674 1738 2.942376 CGCATGTTGAATTGGGTAGCTA 59.058 45.455 0.00 0.00 0.00 3.32
1676 1740 3.243201 GCATGTTGAATTGGGTAGCTAGC 60.243 47.826 14.67 14.67 0.00 3.42
1798 1869 6.770303 TCAATTGATTTGTTAGTCCACTGTCA 59.230 34.615 3.38 0.00 36.65 3.58
1806 1877 4.466015 TGTTAGTCCACTGTCATGCTGATA 59.534 41.667 0.00 0.00 0.00 2.15
2159 2233 7.806690 TCAAGTAAAAATATGACTGCTGTGAC 58.193 34.615 0.00 0.00 0.00 3.67
2174 2248 3.213506 CTGTGACCACACCATTTCAAGA 58.786 45.455 0.00 0.00 45.40 3.02
2175 2249 3.625853 TGTGACCACACCATTTCAAGAA 58.374 40.909 0.00 0.00 45.40 2.52
2322 2396 7.050377 CAGCAAGGGAGATATCTTTTCACTAA 58.950 38.462 6.70 0.00 0.00 2.24
2607 2681 7.735917 TCTAATATCTGGTTACTTCACCATGG 58.264 38.462 11.19 11.19 46.16 3.66
2901 2976 3.820557 TCATATTACCTGCCCTGCTTTC 58.179 45.455 0.00 0.00 0.00 2.62
2911 2986 1.197036 GCCCTGCTTTCGTACAACTTC 59.803 52.381 0.00 0.00 0.00 3.01
3127 3205 2.037772 ACCTGGCAAACTCAGACTAGTG 59.962 50.000 0.00 0.00 34.36 2.74
3246 3325 2.104792 AGAGAACTGGTGCTAGCAAACA 59.895 45.455 21.29 19.82 0.00 2.83
3391 3470 1.974236 GAGGTACTGCTATGCCTGGAT 59.026 52.381 0.00 0.00 41.55 3.41
3406 3485 3.557686 GCCTGGATTGGTTTCTGCAATTT 60.558 43.478 0.00 0.00 0.00 1.82
3407 3486 4.248058 CCTGGATTGGTTTCTGCAATTTC 58.752 43.478 0.00 0.00 0.00 2.17
3408 3487 4.020839 CCTGGATTGGTTTCTGCAATTTCT 60.021 41.667 0.00 0.00 0.00 2.52
3409 3488 4.885413 TGGATTGGTTTCTGCAATTTCTG 58.115 39.130 0.00 0.00 0.00 3.02
3583 3662 6.266131 TCCTTAAGAAATATGATGGCAGGT 57.734 37.500 3.36 0.00 0.00 4.00
3584 3663 7.387265 TCCTTAAGAAATATGATGGCAGGTA 57.613 36.000 3.36 0.00 0.00 3.08
3612 3691 8.422566 AGTTCATAGCTACACTTAAATACTCCC 58.577 37.037 0.00 0.00 0.00 4.30
3613 3692 8.422566 GTTCATAGCTACACTTAAATACTCCCT 58.577 37.037 0.00 0.00 0.00 4.20
3614 3693 8.179509 TCATAGCTACACTTAAATACTCCCTC 57.820 38.462 0.00 0.00 0.00 4.30
3615 3694 5.873146 AGCTACACTTAAATACTCCCTCC 57.127 43.478 0.00 0.00 0.00 4.30
3616 3695 4.341520 AGCTACACTTAAATACTCCCTCCG 59.658 45.833 0.00 0.00 0.00 4.63
3617 3696 4.099113 GCTACACTTAAATACTCCCTCCGT 59.901 45.833 0.00 0.00 0.00 4.69
3618 3697 5.394993 GCTACACTTAAATACTCCCTCCGTT 60.395 44.000 0.00 0.00 0.00 4.44
3619 3698 5.082251 ACACTTAAATACTCCCTCCGTTC 57.918 43.478 0.00 0.00 0.00 3.95
3620 3699 4.081254 ACACTTAAATACTCCCTCCGTTCC 60.081 45.833 0.00 0.00 0.00 3.62
3621 3700 4.161754 CACTTAAATACTCCCTCCGTTCCT 59.838 45.833 0.00 0.00 0.00 3.36
3622 3701 5.361857 CACTTAAATACTCCCTCCGTTCCTA 59.638 44.000 0.00 0.00 0.00 2.94
3623 3702 5.960202 ACTTAAATACTCCCTCCGTTCCTAA 59.040 40.000 0.00 0.00 0.00 2.69
3624 3703 6.441604 ACTTAAATACTCCCTCCGTTCCTAAA 59.558 38.462 0.00 0.00 0.00 1.85
3625 3704 5.970501 AAATACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
3626 3705 8.551682 TTAAATACTCCCTCCGTTCCTAAATA 57.448 34.615 0.00 0.00 0.00 1.40
3627 3706 7.628501 AAATACTCCCTCCGTTCCTAAATAT 57.371 36.000 0.00 0.00 0.00 1.28
3628 3707 8.731591 AAATACTCCCTCCGTTCCTAAATATA 57.268 34.615 0.00 0.00 0.00 0.86
3629 3708 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
3630 3709 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3631 3710 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3632 3711 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3633 3712 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3634 3713 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3635 3714 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3636 3715 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
3637 3716 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
3655 3734 9.582648 AGTCTTTCTAGAGATTCTAATAGGGAC 57.417 37.037 0.00 9.85 0.00 4.46
3656 3735 9.582648 GTCTTTCTAGAGATTCTAATAGGGACT 57.417 37.037 0.00 0.00 46.37 3.85
3675 3754 8.098963 AGGGACTACATACGGATGTATATAGA 57.901 38.462 20.64 0.00 45.42 1.98
3676 3755 7.992033 AGGGACTACATACGGATGTATATAGAC 59.008 40.741 20.64 10.95 45.42 2.59
3677 3756 7.772292 GGGACTACATACGGATGTATATAGACA 59.228 40.741 20.64 2.07 45.42 3.41
3678 3757 9.339850 GGACTACATACGGATGTATATAGACAT 57.660 37.037 20.64 12.70 45.42 3.06
3682 3761 8.982091 ACATACGGATGTATATAGACATAGCT 57.018 34.615 12.79 0.00 44.77 3.32
3683 3762 9.409918 ACATACGGATGTATATAGACATAGCTT 57.590 33.333 12.79 1.71 44.77 3.74
3687 3766 9.332502 ACGGATGTATATAGACATAGCTTAGAG 57.667 37.037 12.82 2.41 40.18 2.43
3688 3767 9.332502 CGGATGTATATAGACATAGCTTAGAGT 57.667 37.037 12.82 0.00 40.18 3.24
3697 3776 9.800572 ATAGACATAGCTTAGAGTGTAGAATCA 57.199 33.333 0.00 0.00 0.00 2.57
3698 3777 7.936584 AGACATAGCTTAGAGTGTAGAATCAC 58.063 38.462 0.00 0.00 38.46 3.06
3708 3787 5.886960 AGTGTAGAATCACTCATTTTGCC 57.113 39.130 0.00 0.00 44.07 4.52
3709 3788 4.702131 AGTGTAGAATCACTCATTTTGCCC 59.298 41.667 0.00 0.00 44.07 5.36
3710 3789 4.702131 GTGTAGAATCACTCATTTTGCCCT 59.298 41.667 0.00 0.00 35.68 5.19
3711 3790 4.701651 TGTAGAATCACTCATTTTGCCCTG 59.298 41.667 0.00 0.00 0.00 4.45
3712 3791 3.771216 AGAATCACTCATTTTGCCCTGT 58.229 40.909 0.00 0.00 0.00 4.00
3713 3792 4.922206 AGAATCACTCATTTTGCCCTGTA 58.078 39.130 0.00 0.00 0.00 2.74
3714 3793 5.513233 AGAATCACTCATTTTGCCCTGTAT 58.487 37.500 0.00 0.00 0.00 2.29
3715 3794 5.359009 AGAATCACTCATTTTGCCCTGTATG 59.641 40.000 0.00 0.00 0.00 2.39
3716 3795 4.032960 TCACTCATTTTGCCCTGTATGT 57.967 40.909 0.00 0.00 0.00 2.29
3717 3796 5.172687 TCACTCATTTTGCCCTGTATGTA 57.827 39.130 0.00 0.00 0.00 2.29
3718 3797 5.185454 TCACTCATTTTGCCCTGTATGTAG 58.815 41.667 0.00 0.00 0.00 2.74
3719 3798 4.943705 CACTCATTTTGCCCTGTATGTAGT 59.056 41.667 0.00 0.00 0.00 2.73
3720 3799 5.065218 CACTCATTTTGCCCTGTATGTAGTC 59.935 44.000 0.00 0.00 0.00 2.59
3721 3800 5.045578 ACTCATTTTGCCCTGTATGTAGTCT 60.046 40.000 0.00 0.00 0.00 3.24
3722 3801 5.428253 TCATTTTGCCCTGTATGTAGTCTC 58.572 41.667 0.00 0.00 0.00 3.36
3723 3802 5.189736 TCATTTTGCCCTGTATGTAGTCTCT 59.810 40.000 0.00 0.00 0.00 3.10
3724 3803 6.382859 TCATTTTGCCCTGTATGTAGTCTCTA 59.617 38.462 0.00 0.00 0.00 2.43
3725 3804 6.808321 TTTTGCCCTGTATGTAGTCTCTAT 57.192 37.500 0.00 0.00 0.00 1.98
3726 3805 6.808321 TTTGCCCTGTATGTAGTCTCTATT 57.192 37.500 0.00 0.00 0.00 1.73
3727 3806 5.791336 TGCCCTGTATGTAGTCTCTATTG 57.209 43.478 0.00 0.00 0.00 1.90
3728 3807 4.588951 TGCCCTGTATGTAGTCTCTATTGG 59.411 45.833 0.00 0.00 0.00 3.16
3729 3808 4.833380 GCCCTGTATGTAGTCTCTATTGGA 59.167 45.833 0.00 0.00 0.00 3.53
3730 3809 5.304614 GCCCTGTATGTAGTCTCTATTGGAA 59.695 44.000 0.00 0.00 0.00 3.53
3731 3810 6.014156 GCCCTGTATGTAGTCTCTATTGGAAT 60.014 42.308 0.00 0.00 0.00 3.01
3732 3811 7.382110 CCCTGTATGTAGTCTCTATTGGAATG 58.618 42.308 0.00 0.00 0.00 2.67
3733 3812 7.015682 CCCTGTATGTAGTCTCTATTGGAATGT 59.984 40.741 0.00 0.00 0.00 2.71
3734 3813 8.085296 CCTGTATGTAGTCTCTATTGGAATGTC 58.915 40.741 0.00 0.00 0.00 3.06
3735 3814 8.768501 TGTATGTAGTCTCTATTGGAATGTCT 57.231 34.615 0.00 0.00 0.00 3.41
3736 3815 9.862149 TGTATGTAGTCTCTATTGGAATGTCTA 57.138 33.333 0.00 0.00 0.00 2.59
3743 3822 9.660180 AGTCTCTATTGGAATGTCTAAAAAGAC 57.340 33.333 0.00 0.00 39.15 3.01
3744 3823 9.660180 GTCTCTATTGGAATGTCTAAAAAGACT 57.340 33.333 7.04 0.00 39.41 3.24
3745 3824 9.658799 TCTCTATTGGAATGTCTAAAAAGACTG 57.341 33.333 7.04 0.00 39.41 3.51
3746 3825 8.268850 TCTATTGGAATGTCTAAAAAGACTGC 57.731 34.615 7.04 0.00 39.41 4.40
3747 3826 8.103305 TCTATTGGAATGTCTAAAAAGACTGCT 58.897 33.333 7.04 0.00 39.41 4.24
3748 3827 9.383519 CTATTGGAATGTCTAAAAAGACTGCTA 57.616 33.333 7.04 0.00 39.41 3.49
3749 3828 8.814038 ATTGGAATGTCTAAAAAGACTGCTAT 57.186 30.769 7.04 0.00 39.41 2.97
3750 3829 8.635765 TTGGAATGTCTAAAAAGACTGCTATT 57.364 30.769 7.04 0.00 39.41 1.73
3751 3830 8.635765 TGGAATGTCTAAAAAGACTGCTATTT 57.364 30.769 7.04 0.00 39.41 1.40
3752 3831 9.733556 TGGAATGTCTAAAAAGACTGCTATTTA 57.266 29.630 7.04 0.00 39.41 1.40
3755 3834 9.959721 AATGTCTAAAAAGACTGCTATTTAGGA 57.040 29.630 7.04 0.00 39.41 2.94
3756 3835 9.959721 ATGTCTAAAAAGACTGCTATTTAGGAA 57.040 29.630 7.04 0.00 39.41 3.36
3757 3836 9.216117 TGTCTAAAAAGACTGCTATTTAGGAAC 57.784 33.333 7.04 0.00 39.41 3.62
3758 3837 8.381387 GTCTAAAAAGACTGCTATTTAGGAACG 58.619 37.037 0.00 0.00 36.48 3.95
3759 3838 6.496338 AAAAAGACTGCTATTTAGGAACGG 57.504 37.500 0.00 0.00 0.00 4.44
3760 3839 5.416271 AAAGACTGCTATTTAGGAACGGA 57.584 39.130 0.00 0.00 0.00 4.69
3761 3840 4.657436 AGACTGCTATTTAGGAACGGAG 57.343 45.455 0.00 0.00 0.00 4.63
3762 3841 3.385111 AGACTGCTATTTAGGAACGGAGG 59.615 47.826 0.00 0.00 0.00 4.30
3763 3842 2.434702 ACTGCTATTTAGGAACGGAGGG 59.565 50.000 0.00 0.00 0.00 4.30
3764 3843 2.698797 CTGCTATTTAGGAACGGAGGGA 59.301 50.000 0.00 0.00 0.00 4.20
3765 3844 2.698797 TGCTATTTAGGAACGGAGGGAG 59.301 50.000 0.00 0.00 0.00 4.30
3766 3845 2.699321 GCTATTTAGGAACGGAGGGAGT 59.301 50.000 0.00 0.00 0.00 3.85
3767 3846 3.893813 GCTATTTAGGAACGGAGGGAGTA 59.106 47.826 0.00 0.00 0.00 2.59
3788 3867 4.563140 ATTAGTTAAGGCCTGTTCCGAA 57.437 40.909 5.69 0.00 0.00 4.30
3919 3998 6.640907 GGTACGTTTTGAATCATTCTTGCTTT 59.359 34.615 0.00 0.00 0.00 3.51
4232 4313 7.709613 ACGTCAGTATTGGTATGTATTTTCTCC 59.290 37.037 0.00 0.00 0.00 3.71
4287 4369 6.620877 TGGGTGTTATCTCTAGTGTGAAAT 57.379 37.500 0.00 0.00 0.00 2.17
4622 4745 6.084326 TCTTTGTTCAGCATACCTTTTTCC 57.916 37.500 0.00 0.00 0.00 3.13
5052 5175 3.006247 GACCTCTTCCACTTCAATGCTC 58.994 50.000 0.00 0.00 0.00 4.26
5116 5239 3.605461 CGCCATTATCTGTCATGCTTTCG 60.605 47.826 0.00 0.00 0.00 3.46
5173 5296 6.473131 CGCATATTATTGTCAAACATGCAAGT 59.527 34.615 17.15 0.00 37.70 3.16
5226 5349 5.140454 GGGGCTCACAATAAAGGACATATT 58.860 41.667 0.00 0.00 0.00 1.28
5286 5409 4.620982 ACCAGCAGCTTTTACATTTGAAC 58.379 39.130 0.00 0.00 0.00 3.18
5295 5418 5.697473 TTTTACATTTGAACGGAGATGCA 57.303 34.783 0.00 0.00 0.00 3.96
5301 5424 6.524734 ACATTTGAACGGAGATGCATATAGA 58.475 36.000 0.00 0.00 0.00 1.98
5305 5428 6.101650 TGAACGGAGATGCATATAGATTGT 57.898 37.500 0.00 0.00 0.00 2.71
5308 5431 6.352016 ACGGAGATGCATATAGATTGTTCT 57.648 37.500 0.00 0.00 35.90 3.01
5332 5455 2.723124 ATTTGCTTGGTAGTTTGCCG 57.277 45.000 0.00 0.00 0.00 5.69
5337 5460 2.223618 TGCTTGGTAGTTTGCCGTTTTC 60.224 45.455 0.00 0.00 0.00 2.29
5367 5557 4.588528 AGAGCAGGAAACCAATTTTGCTAA 59.411 37.500 0.00 0.00 43.59 3.09
5368 5558 4.886579 AGCAGGAAACCAATTTTGCTAAG 58.113 39.130 0.00 0.00 43.59 2.18
5369 5559 4.344968 AGCAGGAAACCAATTTTGCTAAGT 59.655 37.500 0.00 0.00 43.59 2.24
5370 5560 4.686091 GCAGGAAACCAATTTTGCTAAGTC 59.314 41.667 0.00 0.00 43.59 3.01
5371 5561 5.509670 GCAGGAAACCAATTTTGCTAAGTCT 60.510 40.000 0.00 0.00 43.59 3.24
5372 5562 6.515832 CAGGAAACCAATTTTGCTAAGTCTT 58.484 36.000 0.00 0.00 43.59 3.01
5373 5563 7.657336 CAGGAAACCAATTTTGCTAAGTCTTA 58.343 34.615 0.00 0.00 43.59 2.10
5374 5564 7.809806 CAGGAAACCAATTTTGCTAAGTCTTAG 59.190 37.037 14.35 14.35 43.59 2.18
5376 5566 7.808381 GGAAACCAATTTTGCTAAGTCTTAGTC 59.192 37.037 18.72 12.37 35.66 2.59
5385 5575 5.881447 TGCTAAGTCTTAGTCGATTGAGAC 58.119 41.667 20.78 20.78 41.23 3.36
5408 5598 9.877178 AGACTTTTCTCAGTCGATGTTATATTT 57.123 29.630 0.00 0.00 46.85 1.40
5432 5622 1.899142 TGATCTTGTGTGGATCCGTGA 59.101 47.619 7.39 0.00 38.89 4.35
5448 5638 9.849166 TGGATCCGTGAAAAATTATCTTTTTAC 57.151 29.630 7.39 0.00 33.63 2.01
5491 5763 5.694910 GTCACTCGACTGAGATTTGGTTAAA 59.305 40.000 0.00 0.00 45.57 1.52
5532 5804 6.403866 AGCCACACTCAAATTGAATGTTTA 57.596 33.333 7.39 0.00 34.28 2.01
5533 5805 6.449698 AGCCACACTCAAATTGAATGTTTAG 58.550 36.000 7.39 1.57 34.28 1.85
5578 5852 6.226052 TGATTTCATAGATTAGCAGCATCGT 58.774 36.000 0.00 0.00 0.00 3.73
5618 5892 4.637483 TGCAGAACCAAAGAAAGTTCAG 57.363 40.909 5.76 0.00 43.89 3.02
5812 6087 1.098050 GCTGTGGCCTTATTGTCCAG 58.902 55.000 3.32 0.00 0.00 3.86
5901 6196 7.094805 GCTATGAACACTGTTGATTTCCTGTAA 60.095 37.037 0.00 0.00 0.00 2.41
5910 6205 8.073768 ACTGTTGATTTCCTGTAAAAATGTACG 58.926 33.333 0.00 0.00 0.00 3.67
5931 6226 2.364972 AAACCTGCTACAGTTGGCTT 57.635 45.000 0.00 0.00 0.00 4.35
5954 6249 7.520614 GCTTATCTGTATAAACAATGGCACCTC 60.521 40.741 0.00 0.00 34.49 3.85
5966 6261 1.888512 TGGCACCTCAAAAAGATGAGC 59.111 47.619 0.00 0.00 44.43 4.26
6027 6330 3.715628 TCTCAAGTCTTTGCAAAAGGC 57.284 42.857 13.84 8.99 45.13 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 8.457261 GGGAATTGATACTATTCATGATCTTGC 58.543 37.037 0.00 0.00 34.43 4.01
15 16 9.471702 AATGGGGAATTGATACTATTCATGATC 57.528 33.333 0.00 0.00 34.43 2.92
35 36 1.969923 TCAGGCTTTTGTCAAATGGGG 59.030 47.619 11.85 0.37 0.00 4.96
41 42 3.243367 CGTTCCATTCAGGCTTTTGTCAA 60.243 43.478 0.00 0.00 37.29 3.18
47 48 2.270352 TGTCGTTCCATTCAGGCTTT 57.730 45.000 0.00 0.00 37.29 3.51
93 94 3.133721 GTGCTGGACAGTCTGGATAGAAT 59.866 47.826 4.53 0.00 34.01 2.40
171 175 7.939782 TCTTCATCTAGACTCTTGAGCTATTG 58.060 38.462 0.00 3.15 0.00 1.90
178 182 7.709149 TCATGTTCTTCATCTAGACTCTTGA 57.291 36.000 0.00 0.00 34.09 3.02
184 188 8.816144 GTCAGAATTCATGTTCTTCATCTAGAC 58.184 37.037 8.44 0.00 36.33 2.59
188 192 5.583854 CGGTCAGAATTCATGTTCTTCATCT 59.416 40.000 8.44 0.00 36.33 2.90
200 204 3.408634 GTTTCCTTCCGGTCAGAATTCA 58.591 45.455 8.44 0.00 0.00 2.57
208 212 1.730612 CTAAAGCGTTTCCTTCCGGTC 59.269 52.381 0.00 0.00 33.07 4.79
226 230 3.634910 GCCAAGGTTTTTGGTCTGAACTA 59.365 43.478 7.67 0.00 41.53 2.24
274 280 0.537188 GAGGATTGCGGAGTGGAGAA 59.463 55.000 0.00 0.00 0.00 2.87
308 323 3.131046 TCTGCAGAAGCGTCATATTGAGA 59.869 43.478 15.67 0.00 46.23 3.27
331 346 1.511318 TTTGTGCCATGTCGTTCGGG 61.511 55.000 0.00 0.00 0.00 5.14
358 373 5.431179 TGTAATTTCTGAGGGAGGGTTAC 57.569 43.478 0.00 0.00 0.00 2.50
368 383 6.314784 CCGCCTAAAGTTTGTAATTTCTGAG 58.685 40.000 0.00 0.00 0.00 3.35
477 492 4.025396 CGGTCTGCATACAAAGCTCTATTG 60.025 45.833 4.48 0.00 0.00 1.90
565 580 5.692613 ACAGAGGCGATATGTAGAGTTAC 57.307 43.478 0.00 0.00 29.54 2.50
566 581 7.166167 TGATACAGAGGCGATATGTAGAGTTA 58.834 38.462 0.00 0.00 38.91 2.24
574 589 3.367806 CCACCTGATACAGAGGCGATATG 60.368 52.174 0.00 0.00 33.39 1.78
599 614 7.486802 AGAGTGAAAATTGAGGCAAATTTTG 57.513 32.000 21.18 4.72 45.31 2.44
640 655 3.899980 CCACCTCATACAGATGATCAGGA 59.100 47.826 0.09 0.00 41.33 3.86
641 656 3.556633 GCCACCTCATACAGATGATCAGG 60.557 52.174 0.09 0.00 41.33 3.86
642 657 3.070590 TGCCACCTCATACAGATGATCAG 59.929 47.826 0.09 0.00 41.33 2.90
643 658 3.040477 TGCCACCTCATACAGATGATCA 58.960 45.455 0.00 0.00 41.33 2.92
644 659 3.181462 TGTGCCACCTCATACAGATGATC 60.181 47.826 0.00 0.00 41.33 2.92
645 660 2.773661 TGTGCCACCTCATACAGATGAT 59.226 45.455 0.00 0.00 41.33 2.45
646 661 2.187100 TGTGCCACCTCATACAGATGA 58.813 47.619 0.00 0.00 39.88 2.92
647 662 2.696989 TGTGCCACCTCATACAGATG 57.303 50.000 0.00 0.00 0.00 2.90
648 663 3.719268 TTTGTGCCACCTCATACAGAT 57.281 42.857 0.00 0.00 0.00 2.90
649 664 3.500448 TTTTGTGCCACCTCATACAGA 57.500 42.857 0.00 0.00 0.00 3.41
650 665 4.789012 AATTTTGTGCCACCTCATACAG 57.211 40.909 0.00 0.00 0.00 2.74
651 666 4.798924 GCAAATTTTGTGCCACCTCATACA 60.799 41.667 10.65 0.00 35.91 2.29
652 667 3.679502 GCAAATTTTGTGCCACCTCATAC 59.320 43.478 10.65 0.00 35.91 2.39
653 668 3.924144 GCAAATTTTGTGCCACCTCATA 58.076 40.909 10.65 0.00 35.91 2.15
654 669 2.769893 GCAAATTTTGTGCCACCTCAT 58.230 42.857 10.65 0.00 35.91 2.90
655 670 2.237393 GCAAATTTTGTGCCACCTCA 57.763 45.000 10.65 0.00 35.91 3.86
662 677 4.332268 TGAAAGTTGAGGCAAATTTTGTGC 59.668 37.500 10.65 0.00 40.78 4.57
663 678 5.581874 AGTGAAAGTTGAGGCAAATTTTGTG 59.418 36.000 10.65 0.00 40.78 3.33
664 679 5.733676 AGTGAAAGTTGAGGCAAATTTTGT 58.266 33.333 10.65 0.00 40.78 2.83
665 680 6.044682 AGAGTGAAAGTTGAGGCAAATTTTG 58.955 36.000 4.72 4.72 40.78 2.44
666 681 6.225981 AGAGTGAAAGTTGAGGCAAATTTT 57.774 33.333 6.97 0.29 40.78 1.82
667 682 5.859205 AGAGTGAAAGTTGAGGCAAATTT 57.141 34.783 5.43 5.43 42.82 1.82
668 683 6.128172 CGATAGAGTGAAAGTTGAGGCAAATT 60.128 38.462 0.00 0.00 33.04 1.82
669 684 5.352569 CGATAGAGTGAAAGTTGAGGCAAAT 59.647 40.000 0.00 0.00 39.76 2.32
670 685 4.690748 CGATAGAGTGAAAGTTGAGGCAAA 59.309 41.667 0.00 0.00 39.76 3.68
671 686 4.245660 CGATAGAGTGAAAGTTGAGGCAA 58.754 43.478 0.00 0.00 39.76 4.52
672 687 3.849911 CGATAGAGTGAAAGTTGAGGCA 58.150 45.455 0.00 0.00 39.76 4.75
673 688 2.605366 GCGATAGAGTGAAAGTTGAGGC 59.395 50.000 0.00 0.00 39.76 4.70
674 689 3.849911 TGCGATAGAGTGAAAGTTGAGG 58.150 45.455 0.00 0.00 39.76 3.86
675 690 5.578336 TGATTGCGATAGAGTGAAAGTTGAG 59.422 40.000 0.00 0.00 39.76 3.02
676 691 5.348724 GTGATTGCGATAGAGTGAAAGTTGA 59.651 40.000 0.00 0.00 39.76 3.18
677 692 5.446473 GGTGATTGCGATAGAGTGAAAGTTG 60.446 44.000 0.00 0.00 39.76 3.16
678 693 4.631813 GGTGATTGCGATAGAGTGAAAGTT 59.368 41.667 0.00 0.00 39.76 2.66
679 694 4.184629 GGTGATTGCGATAGAGTGAAAGT 58.815 43.478 0.00 0.00 39.76 2.66
680 695 4.183865 TGGTGATTGCGATAGAGTGAAAG 58.816 43.478 0.00 0.00 39.76 2.62
681 696 4.200838 TGGTGATTGCGATAGAGTGAAA 57.799 40.909 0.00 0.00 39.76 2.69
682 697 3.885724 TGGTGATTGCGATAGAGTGAA 57.114 42.857 0.00 0.00 39.76 3.18
683 698 4.100035 AGAATGGTGATTGCGATAGAGTGA 59.900 41.667 0.00 0.00 39.76 3.41
684 699 4.375272 AGAATGGTGATTGCGATAGAGTG 58.625 43.478 0.00 0.00 39.76 3.51
685 700 4.502259 GGAGAATGGTGATTGCGATAGAGT 60.502 45.833 0.00 0.00 39.76 3.24
686 701 3.993081 GGAGAATGGTGATTGCGATAGAG 59.007 47.826 0.00 0.00 39.76 2.43
687 702 3.643320 AGGAGAATGGTGATTGCGATAGA 59.357 43.478 0.00 0.00 39.76 1.98
688 703 3.744942 CAGGAGAATGGTGATTGCGATAG 59.255 47.826 0.00 0.00 0.00 2.08
689 704 3.387699 TCAGGAGAATGGTGATTGCGATA 59.612 43.478 0.00 0.00 0.00 2.92
690 705 2.171237 TCAGGAGAATGGTGATTGCGAT 59.829 45.455 0.00 0.00 0.00 4.58
691 706 1.554617 TCAGGAGAATGGTGATTGCGA 59.445 47.619 0.00 0.00 0.00 5.10
692 707 2.028420 TCAGGAGAATGGTGATTGCG 57.972 50.000 0.00 0.00 0.00 4.85
693 708 3.548770 TGATCAGGAGAATGGTGATTGC 58.451 45.455 0.00 0.00 30.93 3.56
694 709 5.826208 TCATTGATCAGGAGAATGGTGATTG 59.174 40.000 0.00 0.00 30.93 2.67
695 710 6.009908 TCATTGATCAGGAGAATGGTGATT 57.990 37.500 0.00 0.00 30.93 2.57
696 711 5.622180 CTCATTGATCAGGAGAATGGTGAT 58.378 41.667 17.19 0.00 33.53 3.06
697 712 4.685302 GCTCATTGATCAGGAGAATGGTGA 60.685 45.833 23.26 6.99 0.00 4.02
698 713 3.564644 GCTCATTGATCAGGAGAATGGTG 59.435 47.826 23.26 10.44 0.00 4.17
699 714 3.458857 AGCTCATTGATCAGGAGAATGGT 59.541 43.478 23.26 6.52 0.00 3.55
700 715 4.066490 GAGCTCATTGATCAGGAGAATGG 58.934 47.826 23.26 8.66 0.00 3.16
701 716 4.963373 AGAGCTCATTGATCAGGAGAATG 58.037 43.478 23.26 12.66 32.67 2.67
702 717 5.455040 GGAAGAGCTCATTGATCAGGAGAAT 60.455 44.000 23.26 14.02 32.67 2.40
703 718 4.141756 GGAAGAGCTCATTGATCAGGAGAA 60.142 45.833 23.26 0.00 32.67 2.87
704 719 3.387374 GGAAGAGCTCATTGATCAGGAGA 59.613 47.826 23.26 10.82 32.67 3.71
705 720 3.134262 TGGAAGAGCTCATTGATCAGGAG 59.866 47.826 17.77 17.59 32.67 3.69
732 747 3.904571 ACATTGTGTGCATGATGTCAAC 58.095 40.909 0.00 0.00 0.00 3.18
793 841 3.261580 GAGTTTTTGGCTTGCAAGTGTT 58.738 40.909 26.55 5.36 0.00 3.32
987 1036 0.811281 AGCGCATTTAAAGACCAGGC 59.189 50.000 11.47 0.00 0.00 4.85
1206 1255 1.261238 GGAGATAGATCTGCCGGGGG 61.261 65.000 5.18 0.00 39.08 5.40
1256 1305 5.088739 CGACCAGAATACAAAATTCAGCAC 58.911 41.667 1.01 0.00 0.00 4.40
1282 1331 2.732468 CAGATCTCGCGGCATCGG 60.732 66.667 6.13 5.10 36.79 4.18
1283 1332 1.728778 CTCAGATCTCGCGGCATCG 60.729 63.158 6.13 5.19 39.81 3.84
1306 1357 0.179124 GGGAGCAGAACGACAGCTAG 60.179 60.000 0.00 0.00 41.30 3.42
1311 1362 0.179067 AAAACGGGAGCAGAACGACA 60.179 50.000 0.00 0.00 0.00 4.35
1322 1373 7.494625 CAGCAGTTATTAGAGATAAAAACGGGA 59.505 37.037 0.00 0.00 0.00 5.14
1325 1376 7.630924 CCCAGCAGTTATTAGAGATAAAAACG 58.369 38.462 0.00 0.00 0.00 3.60
1326 1377 7.283354 AGCCCAGCAGTTATTAGAGATAAAAAC 59.717 37.037 0.00 0.00 0.00 2.43
1327 1378 7.346471 AGCCCAGCAGTTATTAGAGATAAAAA 58.654 34.615 0.00 0.00 0.00 1.94
1332 1383 3.969976 TGAGCCCAGCAGTTATTAGAGAT 59.030 43.478 0.00 0.00 0.00 2.75
1335 1386 2.435805 CCTGAGCCCAGCAGTTATTAGA 59.564 50.000 0.00 0.00 39.07 2.10
1336 1387 2.171448 ACCTGAGCCCAGCAGTTATTAG 59.829 50.000 0.00 0.00 39.07 1.73
1337 1388 2.092968 CACCTGAGCCCAGCAGTTATTA 60.093 50.000 0.00 0.00 39.07 0.98
1338 1389 0.995024 ACCTGAGCCCAGCAGTTATT 59.005 50.000 0.00 0.00 39.07 1.40
1346 1400 0.902048 TCAGAGACACCTGAGCCCAG 60.902 60.000 0.00 0.00 38.18 4.45
1398 1462 4.308899 ACGTTCTAAATCCGATCTCTGG 57.691 45.455 0.00 0.00 0.00 3.86
1467 1531 2.489938 TCCCACTGCCAATAGACAAC 57.510 50.000 0.00 0.00 0.00 3.32
1478 1542 2.674380 CCTGCACCTTCCCACTGC 60.674 66.667 0.00 0.00 0.00 4.40
1504 1568 4.391216 CAGAACTATTTCACCAGCAGAGTG 59.609 45.833 0.00 0.00 33.72 3.51
1531 1595 3.126514 ACGAGATCCAGTAGTTACACGTG 59.873 47.826 15.48 15.48 0.00 4.49
1536 1600 7.647907 TTCAAAAACGAGATCCAGTAGTTAC 57.352 36.000 0.00 0.00 0.00 2.50
1567 1631 8.706322 ACACTTTAAGGTTATGGTTTCTGAAT 57.294 30.769 0.00 0.00 0.00 2.57
1610 1674 2.033448 ATTGGACCCAAAGCGCGA 59.967 55.556 12.10 0.00 39.55 5.87
1611 1675 2.485122 GATTGGACCCAAAGCGCG 59.515 61.111 0.00 0.00 39.55 6.86
1619 1683 0.462047 CACTGGCTACGATTGGACCC 60.462 60.000 0.00 0.00 0.00 4.46
1646 1710 2.159352 CCAATTCAACATGCGATGCAGA 60.159 45.455 0.00 0.00 43.65 4.26
2091 2165 9.034544 AGCACAAACTCAAATTATTCAAAACTC 57.965 29.630 0.00 0.00 0.00 3.01
2159 2233 9.357652 CTACATAAATTTCTTGAAATGGTGTGG 57.642 33.333 19.59 16.13 0.00 4.17
2174 2248 8.505625 CAAACAAATTGCAGGCTACATAAATTT 58.494 29.630 0.00 0.00 31.00 1.82
2175 2249 7.661027 ACAAACAAATTGCAGGCTACATAAATT 59.339 29.630 0.00 0.00 43.13 1.82
2301 2375 9.844257 CAAGATTAGTGAAAAGATATCTCCCTT 57.156 33.333 5.51 0.09 0.00 3.95
2607 2681 3.134458 CCTTAACCCGATCTTCATCTGC 58.866 50.000 0.00 0.00 0.00 4.26
2901 2976 8.042139 ACTGCTTTAGTAGTACGAAGTTGTACG 61.042 40.741 16.02 0.00 39.95 3.67
2911 2986 6.946229 ATTTGTCACTGCTTTAGTAGTACG 57.054 37.500 0.06 0.00 38.95 3.67
3094 3172 0.768221 TGCCAGGTCCCTTGAGAACT 60.768 55.000 0.00 0.00 32.65 3.01
3127 3205 2.931325 TGATTATGCAACCGTACCGAAC 59.069 45.455 0.00 0.00 0.00 3.95
3246 3325 8.424133 AGAAACAAAAAGGCAAAGAATATCAGT 58.576 29.630 0.00 0.00 0.00 3.41
3406 3485 8.774890 ATGCAAATATTGTTTGTAATTGCAGA 57.225 26.923 14.45 0.00 45.62 4.26
3407 3486 9.828852 AAATGCAAATATTGTTTGTAATTGCAG 57.171 25.926 14.45 0.00 45.62 4.41
3413 3492 9.553064 ACTCCAAAATGCAAATATTGTTTGTAA 57.447 25.926 7.57 0.00 0.00 2.41
3608 3687 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3609 3688 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3610 3689 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3611 3690 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
3629 3708 9.582648 GTCCCTATTAGAATCTCTAGAAAGACT 57.417 37.037 0.00 0.00 29.56 3.24
3630 3709 9.582648 AGTCCCTATTAGAATCTCTAGAAAGAC 57.417 37.037 0.00 0.00 29.56 3.01
3637 3716 9.887629 CGTATGTAGTCCCTATTAGAATCTCTA 57.112 37.037 0.00 0.00 0.00 2.43
3638 3717 7.830201 CCGTATGTAGTCCCTATTAGAATCTCT 59.170 40.741 0.00 0.00 0.00 3.10
3639 3718 7.828223 TCCGTATGTAGTCCCTATTAGAATCTC 59.172 40.741 0.00 0.00 0.00 2.75
3640 3719 7.696981 TCCGTATGTAGTCCCTATTAGAATCT 58.303 38.462 0.00 0.00 0.00 2.40
3641 3720 7.934855 TCCGTATGTAGTCCCTATTAGAATC 57.065 40.000 0.00 0.00 0.00 2.52
3642 3721 7.894364 ACATCCGTATGTAGTCCCTATTAGAAT 59.106 37.037 0.00 0.00 44.66 2.40
3643 3722 7.236529 ACATCCGTATGTAGTCCCTATTAGAA 58.763 38.462 0.00 0.00 44.66 2.10
3644 3723 6.787170 ACATCCGTATGTAGTCCCTATTAGA 58.213 40.000 0.00 0.00 44.66 2.10
3661 3740 9.332502 CTCTAAGCTATGTCTATATACATCCGT 57.667 37.037 7.00 2.54 40.52 4.69
3662 3741 9.332502 ACTCTAAGCTATGTCTATATACATCCG 57.667 37.037 7.00 2.57 40.52 4.18
3671 3750 9.800572 TGATTCTACACTCTAAGCTATGTCTAT 57.199 33.333 0.00 0.00 0.00 1.98
3672 3751 9.058174 GTGATTCTACACTCTAAGCTATGTCTA 57.942 37.037 0.00 0.00 37.73 2.59
3673 3752 7.777910 AGTGATTCTACACTCTAAGCTATGTCT 59.222 37.037 0.00 0.00 46.36 3.41
3674 3753 7.936584 AGTGATTCTACACTCTAAGCTATGTC 58.063 38.462 0.00 0.00 46.36 3.06
3675 3754 7.889873 AGTGATTCTACACTCTAAGCTATGT 57.110 36.000 0.00 0.00 46.36 2.29
3687 3766 4.702131 AGGGCAAAATGAGTGATTCTACAC 59.298 41.667 0.00 0.00 40.60 2.90
3688 3767 4.701651 CAGGGCAAAATGAGTGATTCTACA 59.298 41.667 0.00 0.00 0.00 2.74
3689 3768 4.702131 ACAGGGCAAAATGAGTGATTCTAC 59.298 41.667 0.00 0.00 0.00 2.59
3690 3769 4.922206 ACAGGGCAAAATGAGTGATTCTA 58.078 39.130 0.00 0.00 0.00 2.10
3691 3770 3.771216 ACAGGGCAAAATGAGTGATTCT 58.229 40.909 0.00 0.00 0.00 2.40
3692 3771 5.126061 ACATACAGGGCAAAATGAGTGATTC 59.874 40.000 0.00 0.00 0.00 2.52
3693 3772 5.018809 ACATACAGGGCAAAATGAGTGATT 58.981 37.500 0.00 0.00 0.00 2.57
3694 3773 4.603131 ACATACAGGGCAAAATGAGTGAT 58.397 39.130 0.00 0.00 0.00 3.06
3695 3774 4.032960 ACATACAGGGCAAAATGAGTGA 57.967 40.909 0.00 0.00 0.00 3.41
3696 3775 4.943705 ACTACATACAGGGCAAAATGAGTG 59.056 41.667 0.00 0.00 0.00 3.51
3697 3776 5.045578 AGACTACATACAGGGCAAAATGAGT 60.046 40.000 0.00 0.00 0.00 3.41
3698 3777 5.431765 AGACTACATACAGGGCAAAATGAG 58.568 41.667 0.00 0.00 0.00 2.90
3699 3778 5.189736 AGAGACTACATACAGGGCAAAATGA 59.810 40.000 0.00 0.00 0.00 2.57
3700 3779 5.431765 AGAGACTACATACAGGGCAAAATG 58.568 41.667 0.00 0.00 0.00 2.32
3701 3780 5.700402 AGAGACTACATACAGGGCAAAAT 57.300 39.130 0.00 0.00 0.00 1.82
3702 3781 6.808321 ATAGAGACTACATACAGGGCAAAA 57.192 37.500 0.00 0.00 0.00 2.44
3703 3782 6.408092 CCAATAGAGACTACATACAGGGCAAA 60.408 42.308 0.00 0.00 0.00 3.68
3704 3783 5.070446 CCAATAGAGACTACATACAGGGCAA 59.930 44.000 0.00 0.00 0.00 4.52
3705 3784 4.588951 CCAATAGAGACTACATACAGGGCA 59.411 45.833 0.00 0.00 0.00 5.36
3706 3785 4.833380 TCCAATAGAGACTACATACAGGGC 59.167 45.833 0.00 0.00 0.00 5.19
3707 3786 6.978674 TTCCAATAGAGACTACATACAGGG 57.021 41.667 0.00 0.00 0.00 4.45
3708 3787 7.957002 ACATTCCAATAGAGACTACATACAGG 58.043 38.462 0.00 0.00 0.00 4.00
3709 3788 8.855110 AGACATTCCAATAGAGACTACATACAG 58.145 37.037 0.00 0.00 0.00 2.74
3710 3789 8.768501 AGACATTCCAATAGAGACTACATACA 57.231 34.615 0.00 0.00 0.00 2.29
3717 3796 9.660180 GTCTTTTTAGACATTCCAATAGAGACT 57.340 33.333 0.00 0.00 38.59 3.24
3718 3797 9.660180 AGTCTTTTTAGACATTCCAATAGAGAC 57.340 33.333 7.92 0.00 41.02 3.36
3719 3798 9.658799 CAGTCTTTTTAGACATTCCAATAGAGA 57.341 33.333 7.92 0.00 41.02 3.10
3720 3799 8.394121 GCAGTCTTTTTAGACATTCCAATAGAG 58.606 37.037 7.92 0.00 41.02 2.43
3721 3800 8.103305 AGCAGTCTTTTTAGACATTCCAATAGA 58.897 33.333 7.92 0.00 41.02 1.98
3722 3801 8.273780 AGCAGTCTTTTTAGACATTCCAATAG 57.726 34.615 7.92 0.00 41.02 1.73
3723 3802 9.905713 ATAGCAGTCTTTTTAGACATTCCAATA 57.094 29.630 7.92 0.00 41.02 1.90
3724 3803 8.814038 ATAGCAGTCTTTTTAGACATTCCAAT 57.186 30.769 7.92 0.00 41.02 3.16
3725 3804 8.635765 AATAGCAGTCTTTTTAGACATTCCAA 57.364 30.769 7.92 0.00 41.02 3.53
3726 3805 8.635765 AAATAGCAGTCTTTTTAGACATTCCA 57.364 30.769 7.92 0.00 41.02 3.53
3729 3808 9.959721 TCCTAAATAGCAGTCTTTTTAGACATT 57.040 29.630 13.20 0.00 41.90 2.71
3730 3809 9.959721 TTCCTAAATAGCAGTCTTTTTAGACAT 57.040 29.630 13.20 0.00 41.90 3.06
3731 3810 9.216117 GTTCCTAAATAGCAGTCTTTTTAGACA 57.784 33.333 13.20 2.26 41.90 3.41
3732 3811 8.381387 CGTTCCTAAATAGCAGTCTTTTTAGAC 58.619 37.037 13.20 0.00 41.90 2.59
3733 3812 7.548075 CCGTTCCTAAATAGCAGTCTTTTTAGA 59.452 37.037 13.20 0.00 41.90 2.10
3734 3813 7.548075 TCCGTTCCTAAATAGCAGTCTTTTTAG 59.452 37.037 7.71 7.71 40.46 1.85
3735 3814 7.388437 TCCGTTCCTAAATAGCAGTCTTTTTA 58.612 34.615 0.00 0.00 0.00 1.52
3736 3815 6.235664 TCCGTTCCTAAATAGCAGTCTTTTT 58.764 36.000 0.00 0.00 0.00 1.94
3737 3816 5.801380 TCCGTTCCTAAATAGCAGTCTTTT 58.199 37.500 0.00 0.00 0.00 2.27
3738 3817 5.416271 TCCGTTCCTAAATAGCAGTCTTT 57.584 39.130 0.00 0.00 0.00 2.52
3739 3818 4.141914 CCTCCGTTCCTAAATAGCAGTCTT 60.142 45.833 0.00 0.00 0.00 3.01
3740 3819 3.385111 CCTCCGTTCCTAAATAGCAGTCT 59.615 47.826 0.00 0.00 0.00 3.24
3741 3820 3.492829 CCCTCCGTTCCTAAATAGCAGTC 60.493 52.174 0.00 0.00 0.00 3.51
3742 3821 2.434702 CCCTCCGTTCCTAAATAGCAGT 59.565 50.000 0.00 0.00 0.00 4.40
3743 3822 2.698797 TCCCTCCGTTCCTAAATAGCAG 59.301 50.000 0.00 0.00 0.00 4.24
3744 3823 2.698797 CTCCCTCCGTTCCTAAATAGCA 59.301 50.000 0.00 0.00 0.00 3.49
3745 3824 2.699321 ACTCCCTCCGTTCCTAAATAGC 59.301 50.000 0.00 0.00 0.00 2.97
3746 3825 6.667558 AATACTCCCTCCGTTCCTAAATAG 57.332 41.667 0.00 0.00 0.00 1.73
3747 3826 7.300658 ACTAATACTCCCTCCGTTCCTAAATA 58.699 38.462 0.00 0.00 0.00 1.40
3748 3827 6.141790 ACTAATACTCCCTCCGTTCCTAAAT 58.858 40.000 0.00 0.00 0.00 1.40
3749 3828 5.522641 ACTAATACTCCCTCCGTTCCTAAA 58.477 41.667 0.00 0.00 0.00 1.85
3750 3829 5.134725 ACTAATACTCCCTCCGTTCCTAA 57.865 43.478 0.00 0.00 0.00 2.69
3751 3830 4.803329 ACTAATACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
3752 3831 3.684408 ACTAATACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
3753 3832 5.221402 CCTTAACTAATACTCCCTCCGTTCC 60.221 48.000 0.00 0.00 0.00 3.62
3754 3833 5.738495 GCCTTAACTAATACTCCCTCCGTTC 60.738 48.000 0.00 0.00 0.00 3.95
3755 3834 4.100653 GCCTTAACTAATACTCCCTCCGTT 59.899 45.833 0.00 0.00 0.00 4.44
3756 3835 3.640498 GCCTTAACTAATACTCCCTCCGT 59.360 47.826 0.00 0.00 0.00 4.69
3757 3836 3.006644 GGCCTTAACTAATACTCCCTCCG 59.993 52.174 0.00 0.00 0.00 4.63
3758 3837 4.040584 CAGGCCTTAACTAATACTCCCTCC 59.959 50.000 0.00 0.00 0.00 4.30
3759 3838 4.654724 ACAGGCCTTAACTAATACTCCCTC 59.345 45.833 0.00 0.00 0.00 4.30
3760 3839 4.632292 ACAGGCCTTAACTAATACTCCCT 58.368 43.478 0.00 0.00 0.00 4.20
3761 3840 5.366460 GAACAGGCCTTAACTAATACTCCC 58.634 45.833 0.00 0.00 0.00 4.30
3762 3841 5.366460 GGAACAGGCCTTAACTAATACTCC 58.634 45.833 0.00 0.00 0.00 3.85
3763 3842 5.048507 CGGAACAGGCCTTAACTAATACTC 58.951 45.833 0.00 0.00 0.00 2.59
3764 3843 4.713321 TCGGAACAGGCCTTAACTAATACT 59.287 41.667 0.00 0.00 0.00 2.12
3765 3844 5.014808 TCGGAACAGGCCTTAACTAATAC 57.985 43.478 0.00 0.00 0.00 1.89
3766 3845 5.680594 TTCGGAACAGGCCTTAACTAATA 57.319 39.130 0.00 0.00 0.00 0.98
3767 3846 4.563140 TTCGGAACAGGCCTTAACTAAT 57.437 40.909 0.00 0.00 0.00 1.73
3919 3998 5.593909 TGACAAAAGATTCCAAAAGAGCTCA 59.406 36.000 17.77 0.00 0.00 4.26
4287 4369 5.186256 TGGATATGACCAAAGTAAAGGCA 57.814 39.130 0.00 0.00 36.96 4.75
4622 4745 8.173130 GTCTTAATTACTATTTTGGTCACACCG 58.827 37.037 0.00 0.00 42.58 4.94
4942 5065 5.501897 CGCTTCTTGTAACTCTGAAAACGTT 60.502 40.000 0.00 0.00 0.00 3.99
4943 5066 4.025979 CGCTTCTTGTAACTCTGAAAACGT 60.026 41.667 0.00 0.00 0.00 3.99
5052 5175 8.507470 TTGAATCGATGAGTAATGACTATTCG 57.493 34.615 0.00 7.63 39.65 3.34
5116 5239 2.156343 AAGCTCGTTCTGTTCAGGAC 57.844 50.000 1.43 1.43 0.00 3.85
5173 5296 7.503549 ACATAACATCAGCATCTACAGAATCA 58.496 34.615 0.00 0.00 0.00 2.57
5226 5349 8.626526 CAATCATCAGATGTGAATAATGGTTCA 58.373 33.333 10.34 0.00 35.88 3.18
5286 5409 7.664082 AAAGAACAATCTATATGCATCTCCG 57.336 36.000 0.19 0.00 33.77 4.63
5301 5424 9.830975 AACTACCAAGCAAATTAAAAGAACAAT 57.169 25.926 0.00 0.00 0.00 2.71
5305 5428 7.225734 GGCAAACTACCAAGCAAATTAAAAGAA 59.774 33.333 0.00 0.00 0.00 2.52
5308 5431 5.463724 CGGCAAACTACCAAGCAAATTAAAA 59.536 36.000 0.00 0.00 0.00 1.52
5332 5455 5.048643 GGTTTCCTGCTCTCCTAAAGAAAAC 60.049 44.000 0.00 0.00 32.53 2.43
5337 5460 3.703001 TGGTTTCCTGCTCTCCTAAAG 57.297 47.619 0.00 0.00 0.00 1.85
5408 5598 3.073678 CGGATCCACACAAGATCAAACA 58.926 45.455 13.41 0.00 41.64 2.83
5418 5608 5.943416 AGATAATTTTTCACGGATCCACACA 59.057 36.000 13.41 0.00 0.00 3.72
5419 5609 6.436843 AGATAATTTTTCACGGATCCACAC 57.563 37.500 13.41 0.00 0.00 3.82
5491 5763 6.485984 GTGTGGCTAGATCATTGATTGAGATT 59.514 38.462 0.00 0.00 37.89 2.40
5501 5773 6.182627 TCAATTTGAGTGTGGCTAGATCATT 58.817 36.000 0.00 0.00 0.00 2.57
5552 5826 7.148457 ACGATGCTGCTAATCTATGAAATCATG 60.148 37.037 6.17 0.00 37.15 3.07
5555 5829 6.718454 ACGATGCTGCTAATCTATGAAATC 57.282 37.500 0.00 0.00 0.00 2.17
5578 5852 6.941857 TCTGCAATGTAAGGTTCTACATGTA 58.058 36.000 5.25 5.25 40.79 2.29
5812 6087 1.457346 CCATTCTTGCTCCAGGTCAC 58.543 55.000 0.00 0.00 0.00 3.67
5901 6196 5.993441 ACTGTAGCAGGTTTACGTACATTTT 59.007 36.000 0.00 0.00 35.51 1.82
5910 6205 2.779506 AGCCAACTGTAGCAGGTTTAC 58.220 47.619 5.65 0.00 35.51 2.01
5931 6226 6.894682 TGAGGTGCCATTGTTTATACAGATA 58.105 36.000 0.00 0.00 35.28 1.98
5954 6249 5.578005 ATCATGGACAGCTCATCTTTTTG 57.422 39.130 0.00 0.00 0.00 2.44
5966 6261 4.080356 TCCTAGGGAAACAATCATGGACAG 60.080 45.833 9.46 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.