Multiple sequence alignment - TraesCS3B01G265700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G265700 | chr3B | 100.000 | 6029 | 0 | 0 | 1 | 6029 | 425682536 | 425676508 | 0.000000e+00 | 11134.0 |
1 | TraesCS3B01G265700 | chr3B | 89.855 | 552 | 42 | 5 | 1 | 538 | 52660659 | 52661210 | 0.000000e+00 | 697.0 |
2 | TraesCS3B01G265700 | chr3B | 88.532 | 218 | 16 | 3 | 56 | 264 | 116194259 | 116194476 | 7.750000e-64 | 255.0 |
3 | TraesCS3B01G265700 | chr3B | 91.429 | 70 | 6 | 0 | 1117 | 1186 | 228203639 | 228203708 | 4.970000e-16 | 97.1 |
4 | TraesCS3B01G265700 | chr3D | 95.663 | 2882 | 89 | 19 | 738 | 3608 | 328519568 | 328516712 | 0.000000e+00 | 4597.0 |
5 | TraesCS3B01G265700 | chr3D | 96.588 | 1612 | 29 | 12 | 3767 | 5355 | 328516713 | 328515105 | 0.000000e+00 | 2649.0 |
6 | TraesCS3B01G265700 | chr3D | 90.592 | 574 | 29 | 6 | 5465 | 6015 | 328514849 | 328514278 | 0.000000e+00 | 737.0 |
7 | TraesCS3B01G265700 | chr3D | 92.025 | 163 | 13 | 0 | 3606 | 3768 | 187836470 | 187836308 | 4.700000e-56 | 230.0 |
8 | TraesCS3B01G265700 | chr3D | 93.976 | 83 | 4 | 1 | 5933 | 6015 | 328514091 | 328514010 | 2.280000e-24 | 124.0 |
9 | TraesCS3B01G265700 | chr3D | 87.500 | 80 | 8 | 2 | 1109 | 1186 | 157096803 | 157096882 | 2.310000e-14 | 91.6 |
10 | TraesCS3B01G265700 | chr3D | 91.667 | 48 | 3 | 1 | 2917 | 2964 | 586960156 | 586960110 | 1.400000e-06 | 65.8 |
11 | TraesCS3B01G265700 | chr3A | 93.099 | 2898 | 120 | 39 | 739 | 3608 | 443122966 | 443120121 | 0.000000e+00 | 4170.0 |
12 | TraesCS3B01G265700 | chr3A | 94.665 | 1612 | 39 | 10 | 3767 | 5355 | 443120122 | 443118535 | 0.000000e+00 | 2457.0 |
13 | TraesCS3B01G265700 | chr3A | 88.737 | 586 | 38 | 9 | 5465 | 6027 | 443094367 | 443093787 | 0.000000e+00 | 691.0 |
14 | TraesCS3B01G265700 | chr3A | 90.562 | 445 | 24 | 3 | 214 | 649 | 443123458 | 443123023 | 1.880000e-159 | 573.0 |
15 | TraesCS3B01G265700 | chr3A | 90.769 | 260 | 21 | 2 | 1 | 259 | 82443798 | 82444055 | 1.610000e-90 | 344.0 |
16 | TraesCS3B01G265700 | chr3A | 92.025 | 163 | 13 | 0 | 3606 | 3768 | 238686209 | 238686371 | 4.700000e-56 | 230.0 |
17 | TraesCS3B01G265700 | chr3A | 92.661 | 109 | 5 | 1 | 650 | 755 | 443123088 | 443122980 | 2.910000e-33 | 154.0 |
18 | TraesCS3B01G265700 | chr3A | 92.308 | 104 | 8 | 0 | 65 | 168 | 443123559 | 443123456 | 1.350000e-31 | 148.0 |
19 | TraesCS3B01G265700 | chr3A | 97.059 | 68 | 2 | 0 | 1 | 68 | 443172303 | 443172236 | 1.370000e-21 | 115.0 |
20 | TraesCS3B01G265700 | chr3A | 91.429 | 70 | 6 | 0 | 1117 | 1186 | 171179650 | 171179581 | 4.970000e-16 | 97.1 |
21 | TraesCS3B01G265700 | chrUn | 89.674 | 552 | 43 | 5 | 1 | 538 | 16712417 | 16711866 | 0.000000e+00 | 691.0 |
22 | TraesCS3B01G265700 | chr1B | 84.310 | 478 | 48 | 11 | 123 | 591 | 489208238 | 489207779 | 5.550000e-120 | 442.0 |
23 | TraesCS3B01G265700 | chr4A | 86.688 | 308 | 35 | 5 | 5536 | 5839 | 731618942 | 731619247 | 2.690000e-88 | 337.0 |
24 | TraesCS3B01G265700 | chr6D | 86.567 | 268 | 33 | 2 | 5588 | 5855 | 468245000 | 468244736 | 5.910000e-75 | 292.0 |
25 | TraesCS3B01G265700 | chr6D | 81.893 | 243 | 23 | 6 | 5541 | 5782 | 112955589 | 112955367 | 1.030000e-42 | 185.0 |
26 | TraesCS3B01G265700 | chr2D | 85.878 | 262 | 36 | 1 | 5579 | 5839 | 88755628 | 88755889 | 1.650000e-70 | 278.0 |
27 | TraesCS3B01G265700 | chr7B | 91.411 | 163 | 14 | 0 | 3607 | 3769 | 102234478 | 102234316 | 2.190000e-54 | 224.0 |
28 | TraesCS3B01G265700 | chr7B | 91.379 | 116 | 10 | 0 | 5724 | 5839 | 19950749 | 19950864 | 6.250000e-35 | 159.0 |
29 | TraesCS3B01G265700 | chr5D | 90.533 | 169 | 14 | 2 | 3606 | 3773 | 12270339 | 12270506 | 7.860000e-54 | 222.0 |
30 | TraesCS3B01G265700 | chr5D | 100.000 | 29 | 0 | 0 | 2926 | 2954 | 317386500 | 317386472 | 3.000000e-03 | 54.7 |
31 | TraesCS3B01G265700 | chr4D | 90.964 | 166 | 14 | 1 | 3604 | 3768 | 64390467 | 64390632 | 7.860000e-54 | 222.0 |
32 | TraesCS3B01G265700 | chr5A | 90.058 | 171 | 15 | 2 | 3606 | 3775 | 320214406 | 320214237 | 2.830000e-53 | 220.0 |
33 | TraesCS3B01G265700 | chr6B | 89.080 | 174 | 19 | 0 | 3603 | 3776 | 36133500 | 36133673 | 3.660000e-52 | 217.0 |
34 | TraesCS3B01G265700 | chr4B | 89.881 | 168 | 17 | 0 | 3607 | 3774 | 586319223 | 586319056 | 3.660000e-52 | 217.0 |
35 | TraesCS3B01G265700 | chr1D | 87.634 | 186 | 18 | 5 | 3604 | 3787 | 324412225 | 324412407 | 1.700000e-50 | 211.0 |
36 | TraesCS3B01G265700 | chr1D | 100.000 | 29 | 0 | 0 | 2926 | 2954 | 68242002 | 68242030 | 3.000000e-03 | 54.7 |
37 | TraesCS3B01G265700 | chr6A | 92.593 | 54 | 3 | 1 | 5708 | 5761 | 140730419 | 140730367 | 6.480000e-10 | 76.8 |
38 | TraesCS3B01G265700 | chr6A | 94.000 | 50 | 3 | 0 | 5608 | 5657 | 140730486 | 140730437 | 6.480000e-10 | 76.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G265700 | chr3B | 425676508 | 425682536 | 6028 | True | 11134.00 | 11134 | 100.00000 | 1 | 6029 | 1 | chr3B.!!$R1 | 6028 |
1 | TraesCS3B01G265700 | chr3B | 52660659 | 52661210 | 551 | False | 697.00 | 697 | 89.85500 | 1 | 538 | 1 | chr3B.!!$F1 | 537 |
2 | TraesCS3B01G265700 | chr3D | 328514010 | 328519568 | 5558 | True | 2026.75 | 4597 | 94.20475 | 738 | 6015 | 4 | chr3D.!!$R3 | 5277 |
3 | TraesCS3B01G265700 | chr3A | 443118535 | 443123559 | 5024 | True | 1500.40 | 4170 | 92.65900 | 65 | 5355 | 5 | chr3A.!!$R4 | 5290 |
4 | TraesCS3B01G265700 | chr3A | 443093787 | 443094367 | 580 | True | 691.00 | 691 | 88.73700 | 5465 | 6027 | 1 | chr3A.!!$R2 | 562 |
5 | TraesCS3B01G265700 | chrUn | 16711866 | 16712417 | 551 | True | 691.00 | 691 | 89.67400 | 1 | 538 | 1 | chrUn.!!$R1 | 537 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
599 | 614 | 0.462759 | GCCTCTGTATCAGGTGGCAC | 60.463 | 60.000 | 9.70 | 9.70 | 44.28 | 5.01 | F |
1181 | 1230 | 0.099082 | GTCGAGATGGACGGTCAGAC | 59.901 | 60.000 | 10.76 | 5.61 | 0.00 | 3.51 | F |
1325 | 1376 | 0.179124 | CTAGCTGTCGTTCTGCTCCC | 60.179 | 60.000 | 14.70 | 0.00 | 45.82 | 4.30 | F |
2911 | 2986 | 1.197036 | GCCCTGCTTTCGTACAACTTC | 59.803 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 | F |
3391 | 3470 | 1.974236 | GAGGTACTGCTATGCCTGGAT | 59.026 | 52.381 | 0.00 | 0.00 | 41.55 | 3.41 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1619 | 1683 | 0.462047 | CACTGGCTACGATTGGACCC | 60.462 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 | R |
3094 | 3172 | 0.768221 | TGCCAGGTCCCTTGAGAACT | 60.768 | 55.000 | 0.00 | 0.00 | 32.65 | 3.01 | R |
3127 | 3205 | 2.931325 | TGATTATGCAACCGTACCGAAC | 59.069 | 45.455 | 0.00 | 0.00 | 0.00 | 3.95 | R |
3742 | 3821 | 2.434702 | CCCTCCGTTCCTAAATAGCAGT | 59.565 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 | R |
5116 | 5239 | 2.156343 | AAGCTCGTTCTGTTCAGGAC | 57.844 | 50.000 | 1.43 | 1.43 | 0.00 | 3.85 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
41 | 42 | 9.471702 | GATCATGAATAGTATCAATTCCCCATT | 57.528 | 33.333 | 0.00 | 0.00 | 33.28 | 3.16 |
47 | 48 | 8.837099 | AATAGTATCAATTCCCCATTTGACAA | 57.163 | 30.769 | 0.00 | 0.00 | 34.87 | 3.18 |
57 | 58 | 3.008266 | CCCCATTTGACAAAAGCCTGAAT | 59.992 | 43.478 | 4.41 | 0.00 | 0.00 | 2.57 |
58 | 59 | 3.998341 | CCCATTTGACAAAAGCCTGAATG | 59.002 | 43.478 | 4.41 | 0.00 | 0.00 | 2.67 |
93 | 94 | 2.509548 | CCCCATGTCTCCTATTGTTCCA | 59.490 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
162 | 166 | 5.067805 | GTGATTCTGGAACTTCCTTGTTGTT | 59.932 | 40.000 | 9.31 | 0.00 | 37.46 | 2.83 |
200 | 204 | 6.380846 | AGCTCAAGAGTCTAGATGAAGAACAT | 59.619 | 38.462 | 0.00 | 0.00 | 42.47 | 2.71 |
208 | 212 | 8.945481 | AGTCTAGATGAAGAACATGAATTCTG | 57.055 | 34.615 | 7.05 | 5.30 | 38.95 | 3.02 |
308 | 323 | 5.561532 | CGCAATCCTCGCAAAATGATATCTT | 60.562 | 40.000 | 3.98 | 0.00 | 0.00 | 2.40 |
331 | 346 | 3.190079 | TCAATATGACGCTTCTGCAGAC | 58.810 | 45.455 | 18.03 | 4.92 | 39.64 | 3.51 |
368 | 383 | 4.149598 | ACAAATTTGTGAGTAACCCTCCC | 58.850 | 43.478 | 22.71 | 0.00 | 40.49 | 4.30 |
477 | 492 | 5.238214 | ACTCTCATTTTGTCTCTTCAACTGC | 59.762 | 40.000 | 0.00 | 0.00 | 0.00 | 4.40 |
538 | 553 | 4.083110 | CCAATTTATCATGCTTCTAGGCCG | 60.083 | 45.833 | 0.00 | 0.00 | 0.00 | 6.13 |
542 | 557 | 1.485124 | TCATGCTTCTAGGCCGAGAA | 58.515 | 50.000 | 24.66 | 24.66 | 34.30 | 2.87 |
574 | 589 | 4.632153 | CATATGCCCCACAGTAACTCTAC | 58.368 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
599 | 614 | 0.462759 | GCCTCTGTATCAGGTGGCAC | 60.463 | 60.000 | 9.70 | 9.70 | 44.28 | 5.01 |
640 | 655 | 4.971282 | TCACTCTATCCCAATCACCATTCT | 59.029 | 41.667 | 0.00 | 0.00 | 0.00 | 2.40 |
641 | 656 | 5.070981 | TCACTCTATCCCAATCACCATTCTC | 59.929 | 44.000 | 0.00 | 0.00 | 0.00 | 2.87 |
642 | 657 | 4.349342 | ACTCTATCCCAATCACCATTCTCC | 59.651 | 45.833 | 0.00 | 0.00 | 0.00 | 3.71 |
643 | 658 | 4.570926 | TCTATCCCAATCACCATTCTCCT | 58.429 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
644 | 659 | 3.589951 | ATCCCAATCACCATTCTCCTG | 57.410 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
645 | 660 | 2.561187 | TCCCAATCACCATTCTCCTGA | 58.439 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
646 | 661 | 3.125656 | TCCCAATCACCATTCTCCTGAT | 58.874 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
647 | 662 | 3.137176 | TCCCAATCACCATTCTCCTGATC | 59.863 | 47.826 | 0.00 | 0.00 | 0.00 | 2.92 |
648 | 663 | 3.117776 | CCCAATCACCATTCTCCTGATCA | 60.118 | 47.826 | 0.00 | 0.00 | 0.00 | 2.92 |
649 | 664 | 4.447325 | CCCAATCACCATTCTCCTGATCAT | 60.447 | 45.833 | 0.00 | 0.00 | 0.00 | 2.45 |
650 | 665 | 4.760715 | CCAATCACCATTCTCCTGATCATC | 59.239 | 45.833 | 0.00 | 0.00 | 0.00 | 2.92 |
651 | 666 | 5.456330 | CCAATCACCATTCTCCTGATCATCT | 60.456 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
652 | 667 | 4.684484 | TCACCATTCTCCTGATCATCTG | 57.316 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
653 | 668 | 4.035814 | TCACCATTCTCCTGATCATCTGT | 58.964 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
654 | 669 | 5.211201 | TCACCATTCTCCTGATCATCTGTA | 58.789 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
655 | 670 | 5.842874 | TCACCATTCTCCTGATCATCTGTAT | 59.157 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
656 | 671 | 5.932883 | CACCATTCTCCTGATCATCTGTATG | 59.067 | 44.000 | 0.00 | 0.00 | 0.00 | 2.39 |
657 | 672 | 5.842874 | ACCATTCTCCTGATCATCTGTATGA | 59.157 | 40.000 | 0.00 | 0.00 | 46.01 | 2.15 |
658 | 673 | 6.014413 | ACCATTCTCCTGATCATCTGTATGAG | 60.014 | 42.308 | 0.00 | 0.00 | 45.17 | 2.90 |
659 | 674 | 6.399743 | CATTCTCCTGATCATCTGTATGAGG | 58.600 | 44.000 | 0.00 | 0.00 | 45.17 | 3.86 |
660 | 675 | 5.072129 | TCTCCTGATCATCTGTATGAGGT | 57.928 | 43.478 | 0.00 | 0.00 | 45.17 | 3.85 |
661 | 676 | 4.831710 | TCTCCTGATCATCTGTATGAGGTG | 59.168 | 45.833 | 0.00 | 0.00 | 45.17 | 4.00 |
662 | 677 | 3.899980 | TCCTGATCATCTGTATGAGGTGG | 59.100 | 47.826 | 0.00 | 0.00 | 45.17 | 4.61 |
663 | 678 | 3.556633 | CCTGATCATCTGTATGAGGTGGC | 60.557 | 52.174 | 0.00 | 0.00 | 45.17 | 5.01 |
664 | 679 | 3.040477 | TGATCATCTGTATGAGGTGGCA | 58.960 | 45.455 | 0.00 | 0.00 | 45.17 | 4.92 |
665 | 680 | 2.988010 | TCATCTGTATGAGGTGGCAC | 57.012 | 50.000 | 9.70 | 9.70 | 37.20 | 5.01 |
666 | 681 | 2.187100 | TCATCTGTATGAGGTGGCACA | 58.813 | 47.619 | 20.82 | 0.00 | 37.20 | 4.57 |
667 | 682 | 2.571202 | TCATCTGTATGAGGTGGCACAA | 59.429 | 45.455 | 20.82 | 4.57 | 37.35 | 3.33 |
668 | 683 | 3.008923 | TCATCTGTATGAGGTGGCACAAA | 59.991 | 43.478 | 20.82 | 4.17 | 37.35 | 2.83 |
669 | 684 | 3.500448 | TCTGTATGAGGTGGCACAAAA | 57.500 | 42.857 | 20.82 | 3.77 | 44.16 | 2.44 |
670 | 685 | 4.032960 | TCTGTATGAGGTGGCACAAAAT | 57.967 | 40.909 | 20.82 | 11.24 | 44.16 | 1.82 |
671 | 686 | 4.406456 | TCTGTATGAGGTGGCACAAAATT | 58.594 | 39.130 | 20.82 | 2.35 | 44.16 | 1.82 |
672 | 687 | 4.832266 | TCTGTATGAGGTGGCACAAAATTT | 59.168 | 37.500 | 20.82 | 1.25 | 44.16 | 1.82 |
673 | 688 | 4.880759 | TGTATGAGGTGGCACAAAATTTG | 58.119 | 39.130 | 20.82 | 3.89 | 44.16 | 2.32 |
674 | 689 | 2.237393 | TGAGGTGGCACAAAATTTGC | 57.763 | 45.000 | 20.82 | 0.00 | 44.16 | 3.68 |
683 | 698 | 4.880886 | GCACAAAATTTGCCTCAACTTT | 57.119 | 36.364 | 5.52 | 0.00 | 33.58 | 2.66 |
684 | 699 | 4.836455 | GCACAAAATTTGCCTCAACTTTC | 58.164 | 39.130 | 5.52 | 0.00 | 33.58 | 2.62 |
685 | 700 | 4.332268 | GCACAAAATTTGCCTCAACTTTCA | 59.668 | 37.500 | 5.52 | 0.00 | 33.58 | 2.69 |
686 | 701 | 5.727515 | GCACAAAATTTGCCTCAACTTTCAC | 60.728 | 40.000 | 5.52 | 0.00 | 33.58 | 3.18 |
687 | 702 | 5.581874 | CACAAAATTTGCCTCAACTTTCACT | 59.418 | 36.000 | 5.52 | 0.00 | 28.65 | 3.41 |
688 | 703 | 5.812127 | ACAAAATTTGCCTCAACTTTCACTC | 59.188 | 36.000 | 5.52 | 0.00 | 28.65 | 3.51 |
689 | 704 | 5.859205 | AAATTTGCCTCAACTTTCACTCT | 57.141 | 34.783 | 0.00 | 0.00 | 0.00 | 3.24 |
690 | 705 | 6.959639 | AAATTTGCCTCAACTTTCACTCTA | 57.040 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
691 | 706 | 7.530426 | AAATTTGCCTCAACTTTCACTCTAT | 57.470 | 32.000 | 0.00 | 0.00 | 0.00 | 1.98 |
692 | 707 | 6.749923 | ATTTGCCTCAACTTTCACTCTATC | 57.250 | 37.500 | 0.00 | 0.00 | 0.00 | 2.08 |
693 | 708 | 3.849911 | TGCCTCAACTTTCACTCTATCG | 58.150 | 45.455 | 0.00 | 0.00 | 0.00 | 2.92 |
694 | 709 | 2.605366 | GCCTCAACTTTCACTCTATCGC | 59.395 | 50.000 | 0.00 | 0.00 | 0.00 | 4.58 |
695 | 710 | 3.849911 | CCTCAACTTTCACTCTATCGCA | 58.150 | 45.455 | 0.00 | 0.00 | 0.00 | 5.10 |
696 | 711 | 4.245660 | CCTCAACTTTCACTCTATCGCAA | 58.754 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
697 | 712 | 4.872691 | CCTCAACTTTCACTCTATCGCAAT | 59.127 | 41.667 | 0.00 | 0.00 | 0.00 | 3.56 |
698 | 713 | 5.006165 | CCTCAACTTTCACTCTATCGCAATC | 59.994 | 44.000 | 0.00 | 0.00 | 0.00 | 2.67 |
699 | 714 | 5.478407 | TCAACTTTCACTCTATCGCAATCA | 58.522 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
700 | 715 | 5.348724 | TCAACTTTCACTCTATCGCAATCAC | 59.651 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
701 | 716 | 4.184629 | ACTTTCACTCTATCGCAATCACC | 58.815 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
702 | 717 | 3.885724 | TTCACTCTATCGCAATCACCA | 57.114 | 42.857 | 0.00 | 0.00 | 0.00 | 4.17 |
703 | 718 | 4.406648 | TTCACTCTATCGCAATCACCAT | 57.593 | 40.909 | 0.00 | 0.00 | 0.00 | 3.55 |
704 | 719 | 4.406648 | TCACTCTATCGCAATCACCATT | 57.593 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
705 | 720 | 4.371786 | TCACTCTATCGCAATCACCATTC | 58.628 | 43.478 | 0.00 | 0.00 | 0.00 | 2.67 |
732 | 747 | 1.280133 | TCAATGAGCTCTTCCACCAGG | 59.720 | 52.381 | 16.19 | 0.00 | 0.00 | 4.45 |
1082 | 1131 | 4.047125 | CCACCAACCTGCCCCGAT | 62.047 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
1181 | 1230 | 0.099082 | GTCGAGATGGACGGTCAGAC | 59.901 | 60.000 | 10.76 | 5.61 | 0.00 | 3.51 |
1206 | 1255 | 2.294078 | CCCACTCCCACTCCCACTC | 61.294 | 68.421 | 0.00 | 0.00 | 0.00 | 3.51 |
1256 | 1305 | 2.412870 | TGCCGATATAAACGATGCCTG | 58.587 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
1282 | 1331 | 3.442273 | TGAATTTTGTATTCTGGTCGGGC | 59.558 | 43.478 | 0.00 | 0.00 | 0.00 | 6.13 |
1283 | 1332 | 1.828979 | TTTTGTATTCTGGTCGGGCC | 58.171 | 50.000 | 0.00 | 0.00 | 37.90 | 5.80 |
1325 | 1376 | 0.179124 | CTAGCTGTCGTTCTGCTCCC | 60.179 | 60.000 | 14.70 | 0.00 | 45.82 | 4.30 |
1326 | 1377 | 1.934220 | TAGCTGTCGTTCTGCTCCCG | 61.934 | 60.000 | 14.70 | 0.00 | 45.82 | 5.14 |
1327 | 1378 | 2.651361 | CTGTCGTTCTGCTCCCGT | 59.349 | 61.111 | 0.00 | 0.00 | 0.00 | 5.28 |
1332 | 1383 | 2.137523 | GTCGTTCTGCTCCCGTTTTTA | 58.862 | 47.619 | 0.00 | 0.00 | 0.00 | 1.52 |
1335 | 1386 | 3.000727 | CGTTCTGCTCCCGTTTTTATCT | 58.999 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
1336 | 1387 | 3.062234 | CGTTCTGCTCCCGTTTTTATCTC | 59.938 | 47.826 | 0.00 | 0.00 | 0.00 | 2.75 |
1337 | 1388 | 4.254492 | GTTCTGCTCCCGTTTTTATCTCT | 58.746 | 43.478 | 0.00 | 0.00 | 0.00 | 3.10 |
1338 | 1389 | 5.416947 | GTTCTGCTCCCGTTTTTATCTCTA | 58.583 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
1346 | 1400 | 7.518529 | GCTCCCGTTTTTATCTCTAATAACTGC | 60.519 | 40.741 | 0.00 | 0.00 | 30.85 | 4.40 |
1382 | 1446 | 5.761234 | GTCTCTGATCTATCTCCGTAGTTGT | 59.239 | 44.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1467 | 1531 | 1.209504 | ACACCTTGGGTACGATCATGG | 59.790 | 52.381 | 0.00 | 10.65 | 32.11 | 3.66 |
1478 | 1542 | 4.750098 | GGTACGATCATGGTTGTCTATTGG | 59.250 | 45.833 | 0.88 | 0.00 | 0.00 | 3.16 |
1501 | 1565 | 2.840753 | GGGAAGGTGCAGGGTTGGA | 61.841 | 63.158 | 0.00 | 0.00 | 0.00 | 3.53 |
1504 | 1568 | 4.643387 | AGGTGCAGGGTTGGACGC | 62.643 | 66.667 | 0.00 | 0.00 | 45.63 | 5.19 |
1531 | 1595 | 4.569943 | TGCTGGTGAAATAGTTCTGTCTC | 58.430 | 43.478 | 4.35 | 0.00 | 34.60 | 3.36 |
1536 | 1600 | 4.386049 | GGTGAAATAGTTCTGTCTCACGTG | 59.614 | 45.833 | 9.94 | 9.94 | 35.19 | 4.49 |
1619 | 1683 | 3.654365 | CGATTGCTTCGCGCTTTG | 58.346 | 55.556 | 5.56 | 0.00 | 41.69 | 2.77 |
1662 | 1726 | 1.399089 | CATGTCTGCATCGCATGTTGA | 59.601 | 47.619 | 13.71 | 0.00 | 38.13 | 3.18 |
1674 | 1738 | 2.942376 | CGCATGTTGAATTGGGTAGCTA | 59.058 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
1676 | 1740 | 3.243201 | GCATGTTGAATTGGGTAGCTAGC | 60.243 | 47.826 | 14.67 | 14.67 | 0.00 | 3.42 |
1798 | 1869 | 6.770303 | TCAATTGATTTGTTAGTCCACTGTCA | 59.230 | 34.615 | 3.38 | 0.00 | 36.65 | 3.58 |
1806 | 1877 | 4.466015 | TGTTAGTCCACTGTCATGCTGATA | 59.534 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
2159 | 2233 | 7.806690 | TCAAGTAAAAATATGACTGCTGTGAC | 58.193 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
2174 | 2248 | 3.213506 | CTGTGACCACACCATTTCAAGA | 58.786 | 45.455 | 0.00 | 0.00 | 45.40 | 3.02 |
2175 | 2249 | 3.625853 | TGTGACCACACCATTTCAAGAA | 58.374 | 40.909 | 0.00 | 0.00 | 45.40 | 2.52 |
2322 | 2396 | 7.050377 | CAGCAAGGGAGATATCTTTTCACTAA | 58.950 | 38.462 | 6.70 | 0.00 | 0.00 | 2.24 |
2607 | 2681 | 7.735917 | TCTAATATCTGGTTACTTCACCATGG | 58.264 | 38.462 | 11.19 | 11.19 | 46.16 | 3.66 |
2901 | 2976 | 3.820557 | TCATATTACCTGCCCTGCTTTC | 58.179 | 45.455 | 0.00 | 0.00 | 0.00 | 2.62 |
2911 | 2986 | 1.197036 | GCCCTGCTTTCGTACAACTTC | 59.803 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
3127 | 3205 | 2.037772 | ACCTGGCAAACTCAGACTAGTG | 59.962 | 50.000 | 0.00 | 0.00 | 34.36 | 2.74 |
3246 | 3325 | 2.104792 | AGAGAACTGGTGCTAGCAAACA | 59.895 | 45.455 | 21.29 | 19.82 | 0.00 | 2.83 |
3391 | 3470 | 1.974236 | GAGGTACTGCTATGCCTGGAT | 59.026 | 52.381 | 0.00 | 0.00 | 41.55 | 3.41 |
3406 | 3485 | 3.557686 | GCCTGGATTGGTTTCTGCAATTT | 60.558 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
3407 | 3486 | 4.248058 | CCTGGATTGGTTTCTGCAATTTC | 58.752 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
3408 | 3487 | 4.020839 | CCTGGATTGGTTTCTGCAATTTCT | 60.021 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
3409 | 3488 | 4.885413 | TGGATTGGTTTCTGCAATTTCTG | 58.115 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
3583 | 3662 | 6.266131 | TCCTTAAGAAATATGATGGCAGGT | 57.734 | 37.500 | 3.36 | 0.00 | 0.00 | 4.00 |
3584 | 3663 | 7.387265 | TCCTTAAGAAATATGATGGCAGGTA | 57.613 | 36.000 | 3.36 | 0.00 | 0.00 | 3.08 |
3612 | 3691 | 8.422566 | AGTTCATAGCTACACTTAAATACTCCC | 58.577 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
3613 | 3692 | 8.422566 | GTTCATAGCTACACTTAAATACTCCCT | 58.577 | 37.037 | 0.00 | 0.00 | 0.00 | 4.20 |
3614 | 3693 | 8.179509 | TCATAGCTACACTTAAATACTCCCTC | 57.820 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
3615 | 3694 | 5.873146 | AGCTACACTTAAATACTCCCTCC | 57.127 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
3616 | 3695 | 4.341520 | AGCTACACTTAAATACTCCCTCCG | 59.658 | 45.833 | 0.00 | 0.00 | 0.00 | 4.63 |
3617 | 3696 | 4.099113 | GCTACACTTAAATACTCCCTCCGT | 59.901 | 45.833 | 0.00 | 0.00 | 0.00 | 4.69 |
3618 | 3697 | 5.394993 | GCTACACTTAAATACTCCCTCCGTT | 60.395 | 44.000 | 0.00 | 0.00 | 0.00 | 4.44 |
3619 | 3698 | 5.082251 | ACACTTAAATACTCCCTCCGTTC | 57.918 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
3620 | 3699 | 4.081254 | ACACTTAAATACTCCCTCCGTTCC | 60.081 | 45.833 | 0.00 | 0.00 | 0.00 | 3.62 |
3621 | 3700 | 4.161754 | CACTTAAATACTCCCTCCGTTCCT | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
3622 | 3701 | 5.361857 | CACTTAAATACTCCCTCCGTTCCTA | 59.638 | 44.000 | 0.00 | 0.00 | 0.00 | 2.94 |
3623 | 3702 | 5.960202 | ACTTAAATACTCCCTCCGTTCCTAA | 59.040 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3624 | 3703 | 6.441604 | ACTTAAATACTCCCTCCGTTCCTAAA | 59.558 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
3625 | 3704 | 5.970501 | AAATACTCCCTCCGTTCCTAAAT | 57.029 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
3626 | 3705 | 8.551682 | TTAAATACTCCCTCCGTTCCTAAATA | 57.448 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
3627 | 3706 | 7.628501 | AAATACTCCCTCCGTTCCTAAATAT | 57.371 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
3628 | 3707 | 8.731591 | AAATACTCCCTCCGTTCCTAAATATA | 57.268 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
3629 | 3708 | 8.731591 | AATACTCCCTCCGTTCCTAAATATAA | 57.268 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
3630 | 3709 | 6.667558 | ACTCCCTCCGTTCCTAAATATAAG | 57.332 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
3631 | 3710 | 6.141790 | ACTCCCTCCGTTCCTAAATATAAGT | 58.858 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3632 | 3711 | 6.267242 | ACTCCCTCCGTTCCTAAATATAAGTC | 59.733 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
3633 | 3712 | 6.379579 | TCCCTCCGTTCCTAAATATAAGTCT | 58.620 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
3634 | 3713 | 6.842807 | TCCCTCCGTTCCTAAATATAAGTCTT | 59.157 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
3635 | 3714 | 7.346436 | TCCCTCCGTTCCTAAATATAAGTCTTT | 59.654 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
3636 | 3715 | 7.656542 | CCCTCCGTTCCTAAATATAAGTCTTTC | 59.343 | 40.741 | 0.00 | 0.00 | 0.00 | 2.62 |
3637 | 3716 | 8.422566 | CCTCCGTTCCTAAATATAAGTCTTTCT | 58.577 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
3655 | 3734 | 9.582648 | AGTCTTTCTAGAGATTCTAATAGGGAC | 57.417 | 37.037 | 0.00 | 9.85 | 0.00 | 4.46 |
3656 | 3735 | 9.582648 | GTCTTTCTAGAGATTCTAATAGGGACT | 57.417 | 37.037 | 0.00 | 0.00 | 46.37 | 3.85 |
3675 | 3754 | 8.098963 | AGGGACTACATACGGATGTATATAGA | 57.901 | 38.462 | 20.64 | 0.00 | 45.42 | 1.98 |
3676 | 3755 | 7.992033 | AGGGACTACATACGGATGTATATAGAC | 59.008 | 40.741 | 20.64 | 10.95 | 45.42 | 2.59 |
3677 | 3756 | 7.772292 | GGGACTACATACGGATGTATATAGACA | 59.228 | 40.741 | 20.64 | 2.07 | 45.42 | 3.41 |
3678 | 3757 | 9.339850 | GGACTACATACGGATGTATATAGACAT | 57.660 | 37.037 | 20.64 | 12.70 | 45.42 | 3.06 |
3682 | 3761 | 8.982091 | ACATACGGATGTATATAGACATAGCT | 57.018 | 34.615 | 12.79 | 0.00 | 44.77 | 3.32 |
3683 | 3762 | 9.409918 | ACATACGGATGTATATAGACATAGCTT | 57.590 | 33.333 | 12.79 | 1.71 | 44.77 | 3.74 |
3687 | 3766 | 9.332502 | ACGGATGTATATAGACATAGCTTAGAG | 57.667 | 37.037 | 12.82 | 2.41 | 40.18 | 2.43 |
3688 | 3767 | 9.332502 | CGGATGTATATAGACATAGCTTAGAGT | 57.667 | 37.037 | 12.82 | 0.00 | 40.18 | 3.24 |
3697 | 3776 | 9.800572 | ATAGACATAGCTTAGAGTGTAGAATCA | 57.199 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
3698 | 3777 | 7.936584 | AGACATAGCTTAGAGTGTAGAATCAC | 58.063 | 38.462 | 0.00 | 0.00 | 38.46 | 3.06 |
3708 | 3787 | 5.886960 | AGTGTAGAATCACTCATTTTGCC | 57.113 | 39.130 | 0.00 | 0.00 | 44.07 | 4.52 |
3709 | 3788 | 4.702131 | AGTGTAGAATCACTCATTTTGCCC | 59.298 | 41.667 | 0.00 | 0.00 | 44.07 | 5.36 |
3710 | 3789 | 4.702131 | GTGTAGAATCACTCATTTTGCCCT | 59.298 | 41.667 | 0.00 | 0.00 | 35.68 | 5.19 |
3711 | 3790 | 4.701651 | TGTAGAATCACTCATTTTGCCCTG | 59.298 | 41.667 | 0.00 | 0.00 | 0.00 | 4.45 |
3712 | 3791 | 3.771216 | AGAATCACTCATTTTGCCCTGT | 58.229 | 40.909 | 0.00 | 0.00 | 0.00 | 4.00 |
3713 | 3792 | 4.922206 | AGAATCACTCATTTTGCCCTGTA | 58.078 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
3714 | 3793 | 5.513233 | AGAATCACTCATTTTGCCCTGTAT | 58.487 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
3715 | 3794 | 5.359009 | AGAATCACTCATTTTGCCCTGTATG | 59.641 | 40.000 | 0.00 | 0.00 | 0.00 | 2.39 |
3716 | 3795 | 4.032960 | TCACTCATTTTGCCCTGTATGT | 57.967 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
3717 | 3796 | 5.172687 | TCACTCATTTTGCCCTGTATGTA | 57.827 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
3718 | 3797 | 5.185454 | TCACTCATTTTGCCCTGTATGTAG | 58.815 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
3719 | 3798 | 4.943705 | CACTCATTTTGCCCTGTATGTAGT | 59.056 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
3720 | 3799 | 5.065218 | CACTCATTTTGCCCTGTATGTAGTC | 59.935 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
3721 | 3800 | 5.045578 | ACTCATTTTGCCCTGTATGTAGTCT | 60.046 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
3722 | 3801 | 5.428253 | TCATTTTGCCCTGTATGTAGTCTC | 58.572 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
3723 | 3802 | 5.189736 | TCATTTTGCCCTGTATGTAGTCTCT | 59.810 | 40.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3724 | 3803 | 6.382859 | TCATTTTGCCCTGTATGTAGTCTCTA | 59.617 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
3725 | 3804 | 6.808321 | TTTTGCCCTGTATGTAGTCTCTAT | 57.192 | 37.500 | 0.00 | 0.00 | 0.00 | 1.98 |
3726 | 3805 | 6.808321 | TTTGCCCTGTATGTAGTCTCTATT | 57.192 | 37.500 | 0.00 | 0.00 | 0.00 | 1.73 |
3727 | 3806 | 5.791336 | TGCCCTGTATGTAGTCTCTATTG | 57.209 | 43.478 | 0.00 | 0.00 | 0.00 | 1.90 |
3728 | 3807 | 4.588951 | TGCCCTGTATGTAGTCTCTATTGG | 59.411 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
3729 | 3808 | 4.833380 | GCCCTGTATGTAGTCTCTATTGGA | 59.167 | 45.833 | 0.00 | 0.00 | 0.00 | 3.53 |
3730 | 3809 | 5.304614 | GCCCTGTATGTAGTCTCTATTGGAA | 59.695 | 44.000 | 0.00 | 0.00 | 0.00 | 3.53 |
3731 | 3810 | 6.014156 | GCCCTGTATGTAGTCTCTATTGGAAT | 60.014 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
3732 | 3811 | 7.382110 | CCCTGTATGTAGTCTCTATTGGAATG | 58.618 | 42.308 | 0.00 | 0.00 | 0.00 | 2.67 |
3733 | 3812 | 7.015682 | CCCTGTATGTAGTCTCTATTGGAATGT | 59.984 | 40.741 | 0.00 | 0.00 | 0.00 | 2.71 |
3734 | 3813 | 8.085296 | CCTGTATGTAGTCTCTATTGGAATGTC | 58.915 | 40.741 | 0.00 | 0.00 | 0.00 | 3.06 |
3735 | 3814 | 8.768501 | TGTATGTAGTCTCTATTGGAATGTCT | 57.231 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
3736 | 3815 | 9.862149 | TGTATGTAGTCTCTATTGGAATGTCTA | 57.138 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
3743 | 3822 | 9.660180 | AGTCTCTATTGGAATGTCTAAAAAGAC | 57.340 | 33.333 | 0.00 | 0.00 | 39.15 | 3.01 |
3744 | 3823 | 9.660180 | GTCTCTATTGGAATGTCTAAAAAGACT | 57.340 | 33.333 | 7.04 | 0.00 | 39.41 | 3.24 |
3745 | 3824 | 9.658799 | TCTCTATTGGAATGTCTAAAAAGACTG | 57.341 | 33.333 | 7.04 | 0.00 | 39.41 | 3.51 |
3746 | 3825 | 8.268850 | TCTATTGGAATGTCTAAAAAGACTGC | 57.731 | 34.615 | 7.04 | 0.00 | 39.41 | 4.40 |
3747 | 3826 | 8.103305 | TCTATTGGAATGTCTAAAAAGACTGCT | 58.897 | 33.333 | 7.04 | 0.00 | 39.41 | 4.24 |
3748 | 3827 | 9.383519 | CTATTGGAATGTCTAAAAAGACTGCTA | 57.616 | 33.333 | 7.04 | 0.00 | 39.41 | 3.49 |
3749 | 3828 | 8.814038 | ATTGGAATGTCTAAAAAGACTGCTAT | 57.186 | 30.769 | 7.04 | 0.00 | 39.41 | 2.97 |
3750 | 3829 | 8.635765 | TTGGAATGTCTAAAAAGACTGCTATT | 57.364 | 30.769 | 7.04 | 0.00 | 39.41 | 1.73 |
3751 | 3830 | 8.635765 | TGGAATGTCTAAAAAGACTGCTATTT | 57.364 | 30.769 | 7.04 | 0.00 | 39.41 | 1.40 |
3752 | 3831 | 9.733556 | TGGAATGTCTAAAAAGACTGCTATTTA | 57.266 | 29.630 | 7.04 | 0.00 | 39.41 | 1.40 |
3755 | 3834 | 9.959721 | AATGTCTAAAAAGACTGCTATTTAGGA | 57.040 | 29.630 | 7.04 | 0.00 | 39.41 | 2.94 |
3756 | 3835 | 9.959721 | ATGTCTAAAAAGACTGCTATTTAGGAA | 57.040 | 29.630 | 7.04 | 0.00 | 39.41 | 3.36 |
3757 | 3836 | 9.216117 | TGTCTAAAAAGACTGCTATTTAGGAAC | 57.784 | 33.333 | 7.04 | 0.00 | 39.41 | 3.62 |
3758 | 3837 | 8.381387 | GTCTAAAAAGACTGCTATTTAGGAACG | 58.619 | 37.037 | 0.00 | 0.00 | 36.48 | 3.95 |
3759 | 3838 | 6.496338 | AAAAAGACTGCTATTTAGGAACGG | 57.504 | 37.500 | 0.00 | 0.00 | 0.00 | 4.44 |
3760 | 3839 | 5.416271 | AAAGACTGCTATTTAGGAACGGA | 57.584 | 39.130 | 0.00 | 0.00 | 0.00 | 4.69 |
3761 | 3840 | 4.657436 | AGACTGCTATTTAGGAACGGAG | 57.343 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
3762 | 3841 | 3.385111 | AGACTGCTATTTAGGAACGGAGG | 59.615 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
3763 | 3842 | 2.434702 | ACTGCTATTTAGGAACGGAGGG | 59.565 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3764 | 3843 | 2.698797 | CTGCTATTTAGGAACGGAGGGA | 59.301 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
3765 | 3844 | 2.698797 | TGCTATTTAGGAACGGAGGGAG | 59.301 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3766 | 3845 | 2.699321 | GCTATTTAGGAACGGAGGGAGT | 59.301 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3767 | 3846 | 3.893813 | GCTATTTAGGAACGGAGGGAGTA | 59.106 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
3788 | 3867 | 4.563140 | ATTAGTTAAGGCCTGTTCCGAA | 57.437 | 40.909 | 5.69 | 0.00 | 0.00 | 4.30 |
3919 | 3998 | 6.640907 | GGTACGTTTTGAATCATTCTTGCTTT | 59.359 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
4232 | 4313 | 7.709613 | ACGTCAGTATTGGTATGTATTTTCTCC | 59.290 | 37.037 | 0.00 | 0.00 | 0.00 | 3.71 |
4287 | 4369 | 6.620877 | TGGGTGTTATCTCTAGTGTGAAAT | 57.379 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
4622 | 4745 | 6.084326 | TCTTTGTTCAGCATACCTTTTTCC | 57.916 | 37.500 | 0.00 | 0.00 | 0.00 | 3.13 |
5052 | 5175 | 3.006247 | GACCTCTTCCACTTCAATGCTC | 58.994 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
5116 | 5239 | 3.605461 | CGCCATTATCTGTCATGCTTTCG | 60.605 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
5173 | 5296 | 6.473131 | CGCATATTATTGTCAAACATGCAAGT | 59.527 | 34.615 | 17.15 | 0.00 | 37.70 | 3.16 |
5226 | 5349 | 5.140454 | GGGGCTCACAATAAAGGACATATT | 58.860 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
5286 | 5409 | 4.620982 | ACCAGCAGCTTTTACATTTGAAC | 58.379 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
5295 | 5418 | 5.697473 | TTTTACATTTGAACGGAGATGCA | 57.303 | 34.783 | 0.00 | 0.00 | 0.00 | 3.96 |
5301 | 5424 | 6.524734 | ACATTTGAACGGAGATGCATATAGA | 58.475 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
5305 | 5428 | 6.101650 | TGAACGGAGATGCATATAGATTGT | 57.898 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
5308 | 5431 | 6.352016 | ACGGAGATGCATATAGATTGTTCT | 57.648 | 37.500 | 0.00 | 0.00 | 35.90 | 3.01 |
5332 | 5455 | 2.723124 | ATTTGCTTGGTAGTTTGCCG | 57.277 | 45.000 | 0.00 | 0.00 | 0.00 | 5.69 |
5337 | 5460 | 2.223618 | TGCTTGGTAGTTTGCCGTTTTC | 60.224 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
5367 | 5557 | 4.588528 | AGAGCAGGAAACCAATTTTGCTAA | 59.411 | 37.500 | 0.00 | 0.00 | 43.59 | 3.09 |
5368 | 5558 | 4.886579 | AGCAGGAAACCAATTTTGCTAAG | 58.113 | 39.130 | 0.00 | 0.00 | 43.59 | 2.18 |
5369 | 5559 | 4.344968 | AGCAGGAAACCAATTTTGCTAAGT | 59.655 | 37.500 | 0.00 | 0.00 | 43.59 | 2.24 |
5370 | 5560 | 4.686091 | GCAGGAAACCAATTTTGCTAAGTC | 59.314 | 41.667 | 0.00 | 0.00 | 43.59 | 3.01 |
5371 | 5561 | 5.509670 | GCAGGAAACCAATTTTGCTAAGTCT | 60.510 | 40.000 | 0.00 | 0.00 | 43.59 | 3.24 |
5372 | 5562 | 6.515832 | CAGGAAACCAATTTTGCTAAGTCTT | 58.484 | 36.000 | 0.00 | 0.00 | 43.59 | 3.01 |
5373 | 5563 | 7.657336 | CAGGAAACCAATTTTGCTAAGTCTTA | 58.343 | 34.615 | 0.00 | 0.00 | 43.59 | 2.10 |
5374 | 5564 | 7.809806 | CAGGAAACCAATTTTGCTAAGTCTTAG | 59.190 | 37.037 | 14.35 | 14.35 | 43.59 | 2.18 |
5376 | 5566 | 7.808381 | GGAAACCAATTTTGCTAAGTCTTAGTC | 59.192 | 37.037 | 18.72 | 12.37 | 35.66 | 2.59 |
5385 | 5575 | 5.881447 | TGCTAAGTCTTAGTCGATTGAGAC | 58.119 | 41.667 | 20.78 | 20.78 | 41.23 | 3.36 |
5408 | 5598 | 9.877178 | AGACTTTTCTCAGTCGATGTTATATTT | 57.123 | 29.630 | 0.00 | 0.00 | 46.85 | 1.40 |
5432 | 5622 | 1.899142 | TGATCTTGTGTGGATCCGTGA | 59.101 | 47.619 | 7.39 | 0.00 | 38.89 | 4.35 |
5448 | 5638 | 9.849166 | TGGATCCGTGAAAAATTATCTTTTTAC | 57.151 | 29.630 | 7.39 | 0.00 | 33.63 | 2.01 |
5491 | 5763 | 5.694910 | GTCACTCGACTGAGATTTGGTTAAA | 59.305 | 40.000 | 0.00 | 0.00 | 45.57 | 1.52 |
5532 | 5804 | 6.403866 | AGCCACACTCAAATTGAATGTTTA | 57.596 | 33.333 | 7.39 | 0.00 | 34.28 | 2.01 |
5533 | 5805 | 6.449698 | AGCCACACTCAAATTGAATGTTTAG | 58.550 | 36.000 | 7.39 | 1.57 | 34.28 | 1.85 |
5578 | 5852 | 6.226052 | TGATTTCATAGATTAGCAGCATCGT | 58.774 | 36.000 | 0.00 | 0.00 | 0.00 | 3.73 |
5618 | 5892 | 4.637483 | TGCAGAACCAAAGAAAGTTCAG | 57.363 | 40.909 | 5.76 | 0.00 | 43.89 | 3.02 |
5812 | 6087 | 1.098050 | GCTGTGGCCTTATTGTCCAG | 58.902 | 55.000 | 3.32 | 0.00 | 0.00 | 3.86 |
5901 | 6196 | 7.094805 | GCTATGAACACTGTTGATTTCCTGTAA | 60.095 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
5910 | 6205 | 8.073768 | ACTGTTGATTTCCTGTAAAAATGTACG | 58.926 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
5931 | 6226 | 2.364972 | AAACCTGCTACAGTTGGCTT | 57.635 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
5954 | 6249 | 7.520614 | GCTTATCTGTATAAACAATGGCACCTC | 60.521 | 40.741 | 0.00 | 0.00 | 34.49 | 3.85 |
5966 | 6261 | 1.888512 | TGGCACCTCAAAAAGATGAGC | 59.111 | 47.619 | 0.00 | 0.00 | 44.43 | 4.26 |
6027 | 6330 | 3.715628 | TCTCAAGTCTTTGCAAAAGGC | 57.284 | 42.857 | 13.84 | 8.99 | 45.13 | 4.35 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
11 | 12 | 8.457261 | GGGAATTGATACTATTCATGATCTTGC | 58.543 | 37.037 | 0.00 | 0.00 | 34.43 | 4.01 |
15 | 16 | 9.471702 | AATGGGGAATTGATACTATTCATGATC | 57.528 | 33.333 | 0.00 | 0.00 | 34.43 | 2.92 |
35 | 36 | 1.969923 | TCAGGCTTTTGTCAAATGGGG | 59.030 | 47.619 | 11.85 | 0.37 | 0.00 | 4.96 |
41 | 42 | 3.243367 | CGTTCCATTCAGGCTTTTGTCAA | 60.243 | 43.478 | 0.00 | 0.00 | 37.29 | 3.18 |
47 | 48 | 2.270352 | TGTCGTTCCATTCAGGCTTT | 57.730 | 45.000 | 0.00 | 0.00 | 37.29 | 3.51 |
93 | 94 | 3.133721 | GTGCTGGACAGTCTGGATAGAAT | 59.866 | 47.826 | 4.53 | 0.00 | 34.01 | 2.40 |
171 | 175 | 7.939782 | TCTTCATCTAGACTCTTGAGCTATTG | 58.060 | 38.462 | 0.00 | 3.15 | 0.00 | 1.90 |
178 | 182 | 7.709149 | TCATGTTCTTCATCTAGACTCTTGA | 57.291 | 36.000 | 0.00 | 0.00 | 34.09 | 3.02 |
184 | 188 | 8.816144 | GTCAGAATTCATGTTCTTCATCTAGAC | 58.184 | 37.037 | 8.44 | 0.00 | 36.33 | 2.59 |
188 | 192 | 5.583854 | CGGTCAGAATTCATGTTCTTCATCT | 59.416 | 40.000 | 8.44 | 0.00 | 36.33 | 2.90 |
200 | 204 | 3.408634 | GTTTCCTTCCGGTCAGAATTCA | 58.591 | 45.455 | 8.44 | 0.00 | 0.00 | 2.57 |
208 | 212 | 1.730612 | CTAAAGCGTTTCCTTCCGGTC | 59.269 | 52.381 | 0.00 | 0.00 | 33.07 | 4.79 |
226 | 230 | 3.634910 | GCCAAGGTTTTTGGTCTGAACTA | 59.365 | 43.478 | 7.67 | 0.00 | 41.53 | 2.24 |
274 | 280 | 0.537188 | GAGGATTGCGGAGTGGAGAA | 59.463 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
308 | 323 | 3.131046 | TCTGCAGAAGCGTCATATTGAGA | 59.869 | 43.478 | 15.67 | 0.00 | 46.23 | 3.27 |
331 | 346 | 1.511318 | TTTGTGCCATGTCGTTCGGG | 61.511 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
358 | 373 | 5.431179 | TGTAATTTCTGAGGGAGGGTTAC | 57.569 | 43.478 | 0.00 | 0.00 | 0.00 | 2.50 |
368 | 383 | 6.314784 | CCGCCTAAAGTTTGTAATTTCTGAG | 58.685 | 40.000 | 0.00 | 0.00 | 0.00 | 3.35 |
477 | 492 | 4.025396 | CGGTCTGCATACAAAGCTCTATTG | 60.025 | 45.833 | 4.48 | 0.00 | 0.00 | 1.90 |
565 | 580 | 5.692613 | ACAGAGGCGATATGTAGAGTTAC | 57.307 | 43.478 | 0.00 | 0.00 | 29.54 | 2.50 |
566 | 581 | 7.166167 | TGATACAGAGGCGATATGTAGAGTTA | 58.834 | 38.462 | 0.00 | 0.00 | 38.91 | 2.24 |
574 | 589 | 3.367806 | CCACCTGATACAGAGGCGATATG | 60.368 | 52.174 | 0.00 | 0.00 | 33.39 | 1.78 |
599 | 614 | 7.486802 | AGAGTGAAAATTGAGGCAAATTTTG | 57.513 | 32.000 | 21.18 | 4.72 | 45.31 | 2.44 |
640 | 655 | 3.899980 | CCACCTCATACAGATGATCAGGA | 59.100 | 47.826 | 0.09 | 0.00 | 41.33 | 3.86 |
641 | 656 | 3.556633 | GCCACCTCATACAGATGATCAGG | 60.557 | 52.174 | 0.09 | 0.00 | 41.33 | 3.86 |
642 | 657 | 3.070590 | TGCCACCTCATACAGATGATCAG | 59.929 | 47.826 | 0.09 | 0.00 | 41.33 | 2.90 |
643 | 658 | 3.040477 | TGCCACCTCATACAGATGATCA | 58.960 | 45.455 | 0.00 | 0.00 | 41.33 | 2.92 |
644 | 659 | 3.181462 | TGTGCCACCTCATACAGATGATC | 60.181 | 47.826 | 0.00 | 0.00 | 41.33 | 2.92 |
645 | 660 | 2.773661 | TGTGCCACCTCATACAGATGAT | 59.226 | 45.455 | 0.00 | 0.00 | 41.33 | 2.45 |
646 | 661 | 2.187100 | TGTGCCACCTCATACAGATGA | 58.813 | 47.619 | 0.00 | 0.00 | 39.88 | 2.92 |
647 | 662 | 2.696989 | TGTGCCACCTCATACAGATG | 57.303 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
648 | 663 | 3.719268 | TTTGTGCCACCTCATACAGAT | 57.281 | 42.857 | 0.00 | 0.00 | 0.00 | 2.90 |
649 | 664 | 3.500448 | TTTTGTGCCACCTCATACAGA | 57.500 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 |
650 | 665 | 4.789012 | AATTTTGTGCCACCTCATACAG | 57.211 | 40.909 | 0.00 | 0.00 | 0.00 | 2.74 |
651 | 666 | 4.798924 | GCAAATTTTGTGCCACCTCATACA | 60.799 | 41.667 | 10.65 | 0.00 | 35.91 | 2.29 |
652 | 667 | 3.679502 | GCAAATTTTGTGCCACCTCATAC | 59.320 | 43.478 | 10.65 | 0.00 | 35.91 | 2.39 |
653 | 668 | 3.924144 | GCAAATTTTGTGCCACCTCATA | 58.076 | 40.909 | 10.65 | 0.00 | 35.91 | 2.15 |
654 | 669 | 2.769893 | GCAAATTTTGTGCCACCTCAT | 58.230 | 42.857 | 10.65 | 0.00 | 35.91 | 2.90 |
655 | 670 | 2.237393 | GCAAATTTTGTGCCACCTCA | 57.763 | 45.000 | 10.65 | 0.00 | 35.91 | 3.86 |
662 | 677 | 4.332268 | TGAAAGTTGAGGCAAATTTTGTGC | 59.668 | 37.500 | 10.65 | 0.00 | 40.78 | 4.57 |
663 | 678 | 5.581874 | AGTGAAAGTTGAGGCAAATTTTGTG | 59.418 | 36.000 | 10.65 | 0.00 | 40.78 | 3.33 |
664 | 679 | 5.733676 | AGTGAAAGTTGAGGCAAATTTTGT | 58.266 | 33.333 | 10.65 | 0.00 | 40.78 | 2.83 |
665 | 680 | 6.044682 | AGAGTGAAAGTTGAGGCAAATTTTG | 58.955 | 36.000 | 4.72 | 4.72 | 40.78 | 2.44 |
666 | 681 | 6.225981 | AGAGTGAAAGTTGAGGCAAATTTT | 57.774 | 33.333 | 6.97 | 0.29 | 40.78 | 1.82 |
667 | 682 | 5.859205 | AGAGTGAAAGTTGAGGCAAATTT | 57.141 | 34.783 | 5.43 | 5.43 | 42.82 | 1.82 |
668 | 683 | 6.128172 | CGATAGAGTGAAAGTTGAGGCAAATT | 60.128 | 38.462 | 0.00 | 0.00 | 33.04 | 1.82 |
669 | 684 | 5.352569 | CGATAGAGTGAAAGTTGAGGCAAAT | 59.647 | 40.000 | 0.00 | 0.00 | 39.76 | 2.32 |
670 | 685 | 4.690748 | CGATAGAGTGAAAGTTGAGGCAAA | 59.309 | 41.667 | 0.00 | 0.00 | 39.76 | 3.68 |
671 | 686 | 4.245660 | CGATAGAGTGAAAGTTGAGGCAA | 58.754 | 43.478 | 0.00 | 0.00 | 39.76 | 4.52 |
672 | 687 | 3.849911 | CGATAGAGTGAAAGTTGAGGCA | 58.150 | 45.455 | 0.00 | 0.00 | 39.76 | 4.75 |
673 | 688 | 2.605366 | GCGATAGAGTGAAAGTTGAGGC | 59.395 | 50.000 | 0.00 | 0.00 | 39.76 | 4.70 |
674 | 689 | 3.849911 | TGCGATAGAGTGAAAGTTGAGG | 58.150 | 45.455 | 0.00 | 0.00 | 39.76 | 3.86 |
675 | 690 | 5.578336 | TGATTGCGATAGAGTGAAAGTTGAG | 59.422 | 40.000 | 0.00 | 0.00 | 39.76 | 3.02 |
676 | 691 | 5.348724 | GTGATTGCGATAGAGTGAAAGTTGA | 59.651 | 40.000 | 0.00 | 0.00 | 39.76 | 3.18 |
677 | 692 | 5.446473 | GGTGATTGCGATAGAGTGAAAGTTG | 60.446 | 44.000 | 0.00 | 0.00 | 39.76 | 3.16 |
678 | 693 | 4.631813 | GGTGATTGCGATAGAGTGAAAGTT | 59.368 | 41.667 | 0.00 | 0.00 | 39.76 | 2.66 |
679 | 694 | 4.184629 | GGTGATTGCGATAGAGTGAAAGT | 58.815 | 43.478 | 0.00 | 0.00 | 39.76 | 2.66 |
680 | 695 | 4.183865 | TGGTGATTGCGATAGAGTGAAAG | 58.816 | 43.478 | 0.00 | 0.00 | 39.76 | 2.62 |
681 | 696 | 4.200838 | TGGTGATTGCGATAGAGTGAAA | 57.799 | 40.909 | 0.00 | 0.00 | 39.76 | 2.69 |
682 | 697 | 3.885724 | TGGTGATTGCGATAGAGTGAA | 57.114 | 42.857 | 0.00 | 0.00 | 39.76 | 3.18 |
683 | 698 | 4.100035 | AGAATGGTGATTGCGATAGAGTGA | 59.900 | 41.667 | 0.00 | 0.00 | 39.76 | 3.41 |
684 | 699 | 4.375272 | AGAATGGTGATTGCGATAGAGTG | 58.625 | 43.478 | 0.00 | 0.00 | 39.76 | 3.51 |
685 | 700 | 4.502259 | GGAGAATGGTGATTGCGATAGAGT | 60.502 | 45.833 | 0.00 | 0.00 | 39.76 | 3.24 |
686 | 701 | 3.993081 | GGAGAATGGTGATTGCGATAGAG | 59.007 | 47.826 | 0.00 | 0.00 | 39.76 | 2.43 |
687 | 702 | 3.643320 | AGGAGAATGGTGATTGCGATAGA | 59.357 | 43.478 | 0.00 | 0.00 | 39.76 | 1.98 |
688 | 703 | 3.744942 | CAGGAGAATGGTGATTGCGATAG | 59.255 | 47.826 | 0.00 | 0.00 | 0.00 | 2.08 |
689 | 704 | 3.387699 | TCAGGAGAATGGTGATTGCGATA | 59.612 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
690 | 705 | 2.171237 | TCAGGAGAATGGTGATTGCGAT | 59.829 | 45.455 | 0.00 | 0.00 | 0.00 | 4.58 |
691 | 706 | 1.554617 | TCAGGAGAATGGTGATTGCGA | 59.445 | 47.619 | 0.00 | 0.00 | 0.00 | 5.10 |
692 | 707 | 2.028420 | TCAGGAGAATGGTGATTGCG | 57.972 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
693 | 708 | 3.548770 | TGATCAGGAGAATGGTGATTGC | 58.451 | 45.455 | 0.00 | 0.00 | 30.93 | 3.56 |
694 | 709 | 5.826208 | TCATTGATCAGGAGAATGGTGATTG | 59.174 | 40.000 | 0.00 | 0.00 | 30.93 | 2.67 |
695 | 710 | 6.009908 | TCATTGATCAGGAGAATGGTGATT | 57.990 | 37.500 | 0.00 | 0.00 | 30.93 | 2.57 |
696 | 711 | 5.622180 | CTCATTGATCAGGAGAATGGTGAT | 58.378 | 41.667 | 17.19 | 0.00 | 33.53 | 3.06 |
697 | 712 | 4.685302 | GCTCATTGATCAGGAGAATGGTGA | 60.685 | 45.833 | 23.26 | 6.99 | 0.00 | 4.02 |
698 | 713 | 3.564644 | GCTCATTGATCAGGAGAATGGTG | 59.435 | 47.826 | 23.26 | 10.44 | 0.00 | 4.17 |
699 | 714 | 3.458857 | AGCTCATTGATCAGGAGAATGGT | 59.541 | 43.478 | 23.26 | 6.52 | 0.00 | 3.55 |
700 | 715 | 4.066490 | GAGCTCATTGATCAGGAGAATGG | 58.934 | 47.826 | 23.26 | 8.66 | 0.00 | 3.16 |
701 | 716 | 4.963373 | AGAGCTCATTGATCAGGAGAATG | 58.037 | 43.478 | 23.26 | 12.66 | 32.67 | 2.67 |
702 | 717 | 5.455040 | GGAAGAGCTCATTGATCAGGAGAAT | 60.455 | 44.000 | 23.26 | 14.02 | 32.67 | 2.40 |
703 | 718 | 4.141756 | GGAAGAGCTCATTGATCAGGAGAA | 60.142 | 45.833 | 23.26 | 0.00 | 32.67 | 2.87 |
704 | 719 | 3.387374 | GGAAGAGCTCATTGATCAGGAGA | 59.613 | 47.826 | 23.26 | 10.82 | 32.67 | 3.71 |
705 | 720 | 3.134262 | TGGAAGAGCTCATTGATCAGGAG | 59.866 | 47.826 | 17.77 | 17.59 | 32.67 | 3.69 |
732 | 747 | 3.904571 | ACATTGTGTGCATGATGTCAAC | 58.095 | 40.909 | 0.00 | 0.00 | 0.00 | 3.18 |
793 | 841 | 3.261580 | GAGTTTTTGGCTTGCAAGTGTT | 58.738 | 40.909 | 26.55 | 5.36 | 0.00 | 3.32 |
987 | 1036 | 0.811281 | AGCGCATTTAAAGACCAGGC | 59.189 | 50.000 | 11.47 | 0.00 | 0.00 | 4.85 |
1206 | 1255 | 1.261238 | GGAGATAGATCTGCCGGGGG | 61.261 | 65.000 | 5.18 | 0.00 | 39.08 | 5.40 |
1256 | 1305 | 5.088739 | CGACCAGAATACAAAATTCAGCAC | 58.911 | 41.667 | 1.01 | 0.00 | 0.00 | 4.40 |
1282 | 1331 | 2.732468 | CAGATCTCGCGGCATCGG | 60.732 | 66.667 | 6.13 | 5.10 | 36.79 | 4.18 |
1283 | 1332 | 1.728778 | CTCAGATCTCGCGGCATCG | 60.729 | 63.158 | 6.13 | 5.19 | 39.81 | 3.84 |
1306 | 1357 | 0.179124 | GGGAGCAGAACGACAGCTAG | 60.179 | 60.000 | 0.00 | 0.00 | 41.30 | 3.42 |
1311 | 1362 | 0.179067 | AAAACGGGAGCAGAACGACA | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1322 | 1373 | 7.494625 | CAGCAGTTATTAGAGATAAAAACGGGA | 59.505 | 37.037 | 0.00 | 0.00 | 0.00 | 5.14 |
1325 | 1376 | 7.630924 | CCCAGCAGTTATTAGAGATAAAAACG | 58.369 | 38.462 | 0.00 | 0.00 | 0.00 | 3.60 |
1326 | 1377 | 7.283354 | AGCCCAGCAGTTATTAGAGATAAAAAC | 59.717 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
1327 | 1378 | 7.346471 | AGCCCAGCAGTTATTAGAGATAAAAA | 58.654 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
1332 | 1383 | 3.969976 | TGAGCCCAGCAGTTATTAGAGAT | 59.030 | 43.478 | 0.00 | 0.00 | 0.00 | 2.75 |
1335 | 1386 | 2.435805 | CCTGAGCCCAGCAGTTATTAGA | 59.564 | 50.000 | 0.00 | 0.00 | 39.07 | 2.10 |
1336 | 1387 | 2.171448 | ACCTGAGCCCAGCAGTTATTAG | 59.829 | 50.000 | 0.00 | 0.00 | 39.07 | 1.73 |
1337 | 1388 | 2.092968 | CACCTGAGCCCAGCAGTTATTA | 60.093 | 50.000 | 0.00 | 0.00 | 39.07 | 0.98 |
1338 | 1389 | 0.995024 | ACCTGAGCCCAGCAGTTATT | 59.005 | 50.000 | 0.00 | 0.00 | 39.07 | 1.40 |
1346 | 1400 | 0.902048 | TCAGAGACACCTGAGCCCAG | 60.902 | 60.000 | 0.00 | 0.00 | 38.18 | 4.45 |
1398 | 1462 | 4.308899 | ACGTTCTAAATCCGATCTCTGG | 57.691 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
1467 | 1531 | 2.489938 | TCCCACTGCCAATAGACAAC | 57.510 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1478 | 1542 | 2.674380 | CCTGCACCTTCCCACTGC | 60.674 | 66.667 | 0.00 | 0.00 | 0.00 | 4.40 |
1504 | 1568 | 4.391216 | CAGAACTATTTCACCAGCAGAGTG | 59.609 | 45.833 | 0.00 | 0.00 | 33.72 | 3.51 |
1531 | 1595 | 3.126514 | ACGAGATCCAGTAGTTACACGTG | 59.873 | 47.826 | 15.48 | 15.48 | 0.00 | 4.49 |
1536 | 1600 | 7.647907 | TTCAAAAACGAGATCCAGTAGTTAC | 57.352 | 36.000 | 0.00 | 0.00 | 0.00 | 2.50 |
1567 | 1631 | 8.706322 | ACACTTTAAGGTTATGGTTTCTGAAT | 57.294 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
1610 | 1674 | 2.033448 | ATTGGACCCAAAGCGCGA | 59.967 | 55.556 | 12.10 | 0.00 | 39.55 | 5.87 |
1611 | 1675 | 2.485122 | GATTGGACCCAAAGCGCG | 59.515 | 61.111 | 0.00 | 0.00 | 39.55 | 6.86 |
1619 | 1683 | 0.462047 | CACTGGCTACGATTGGACCC | 60.462 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
1646 | 1710 | 2.159352 | CCAATTCAACATGCGATGCAGA | 60.159 | 45.455 | 0.00 | 0.00 | 43.65 | 4.26 |
2091 | 2165 | 9.034544 | AGCACAAACTCAAATTATTCAAAACTC | 57.965 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
2159 | 2233 | 9.357652 | CTACATAAATTTCTTGAAATGGTGTGG | 57.642 | 33.333 | 19.59 | 16.13 | 0.00 | 4.17 |
2174 | 2248 | 8.505625 | CAAACAAATTGCAGGCTACATAAATTT | 58.494 | 29.630 | 0.00 | 0.00 | 31.00 | 1.82 |
2175 | 2249 | 7.661027 | ACAAACAAATTGCAGGCTACATAAATT | 59.339 | 29.630 | 0.00 | 0.00 | 43.13 | 1.82 |
2301 | 2375 | 9.844257 | CAAGATTAGTGAAAAGATATCTCCCTT | 57.156 | 33.333 | 5.51 | 0.09 | 0.00 | 3.95 |
2607 | 2681 | 3.134458 | CCTTAACCCGATCTTCATCTGC | 58.866 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2901 | 2976 | 8.042139 | ACTGCTTTAGTAGTACGAAGTTGTACG | 61.042 | 40.741 | 16.02 | 0.00 | 39.95 | 3.67 |
2911 | 2986 | 6.946229 | ATTTGTCACTGCTTTAGTAGTACG | 57.054 | 37.500 | 0.06 | 0.00 | 38.95 | 3.67 |
3094 | 3172 | 0.768221 | TGCCAGGTCCCTTGAGAACT | 60.768 | 55.000 | 0.00 | 0.00 | 32.65 | 3.01 |
3127 | 3205 | 2.931325 | TGATTATGCAACCGTACCGAAC | 59.069 | 45.455 | 0.00 | 0.00 | 0.00 | 3.95 |
3246 | 3325 | 8.424133 | AGAAACAAAAAGGCAAAGAATATCAGT | 58.576 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
3406 | 3485 | 8.774890 | ATGCAAATATTGTTTGTAATTGCAGA | 57.225 | 26.923 | 14.45 | 0.00 | 45.62 | 4.26 |
3407 | 3486 | 9.828852 | AAATGCAAATATTGTTTGTAATTGCAG | 57.171 | 25.926 | 14.45 | 0.00 | 45.62 | 4.41 |
3413 | 3492 | 9.553064 | ACTCCAAAATGCAAATATTGTTTGTAA | 57.447 | 25.926 | 7.57 | 0.00 | 0.00 | 2.41 |
3608 | 3687 | 6.494146 | AGACTTATATTTAGGAACGGAGGGAG | 59.506 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
3609 | 3688 | 6.379579 | AGACTTATATTTAGGAACGGAGGGA | 58.620 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
3610 | 3689 | 6.667558 | AGACTTATATTTAGGAACGGAGGG | 57.332 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
3611 | 3690 | 8.422566 | AGAAAGACTTATATTTAGGAACGGAGG | 58.577 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
3629 | 3708 | 9.582648 | GTCCCTATTAGAATCTCTAGAAAGACT | 57.417 | 37.037 | 0.00 | 0.00 | 29.56 | 3.24 |
3630 | 3709 | 9.582648 | AGTCCCTATTAGAATCTCTAGAAAGAC | 57.417 | 37.037 | 0.00 | 0.00 | 29.56 | 3.01 |
3637 | 3716 | 9.887629 | CGTATGTAGTCCCTATTAGAATCTCTA | 57.112 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
3638 | 3717 | 7.830201 | CCGTATGTAGTCCCTATTAGAATCTCT | 59.170 | 40.741 | 0.00 | 0.00 | 0.00 | 3.10 |
3639 | 3718 | 7.828223 | TCCGTATGTAGTCCCTATTAGAATCTC | 59.172 | 40.741 | 0.00 | 0.00 | 0.00 | 2.75 |
3640 | 3719 | 7.696981 | TCCGTATGTAGTCCCTATTAGAATCT | 58.303 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
3641 | 3720 | 7.934855 | TCCGTATGTAGTCCCTATTAGAATC | 57.065 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3642 | 3721 | 7.894364 | ACATCCGTATGTAGTCCCTATTAGAAT | 59.106 | 37.037 | 0.00 | 0.00 | 44.66 | 2.40 |
3643 | 3722 | 7.236529 | ACATCCGTATGTAGTCCCTATTAGAA | 58.763 | 38.462 | 0.00 | 0.00 | 44.66 | 2.10 |
3644 | 3723 | 6.787170 | ACATCCGTATGTAGTCCCTATTAGA | 58.213 | 40.000 | 0.00 | 0.00 | 44.66 | 2.10 |
3661 | 3740 | 9.332502 | CTCTAAGCTATGTCTATATACATCCGT | 57.667 | 37.037 | 7.00 | 2.54 | 40.52 | 4.69 |
3662 | 3741 | 9.332502 | ACTCTAAGCTATGTCTATATACATCCG | 57.667 | 37.037 | 7.00 | 2.57 | 40.52 | 4.18 |
3671 | 3750 | 9.800572 | TGATTCTACACTCTAAGCTATGTCTAT | 57.199 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
3672 | 3751 | 9.058174 | GTGATTCTACACTCTAAGCTATGTCTA | 57.942 | 37.037 | 0.00 | 0.00 | 37.73 | 2.59 |
3673 | 3752 | 7.777910 | AGTGATTCTACACTCTAAGCTATGTCT | 59.222 | 37.037 | 0.00 | 0.00 | 46.36 | 3.41 |
3674 | 3753 | 7.936584 | AGTGATTCTACACTCTAAGCTATGTC | 58.063 | 38.462 | 0.00 | 0.00 | 46.36 | 3.06 |
3675 | 3754 | 7.889873 | AGTGATTCTACACTCTAAGCTATGT | 57.110 | 36.000 | 0.00 | 0.00 | 46.36 | 2.29 |
3687 | 3766 | 4.702131 | AGGGCAAAATGAGTGATTCTACAC | 59.298 | 41.667 | 0.00 | 0.00 | 40.60 | 2.90 |
3688 | 3767 | 4.701651 | CAGGGCAAAATGAGTGATTCTACA | 59.298 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
3689 | 3768 | 4.702131 | ACAGGGCAAAATGAGTGATTCTAC | 59.298 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
3690 | 3769 | 4.922206 | ACAGGGCAAAATGAGTGATTCTA | 58.078 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
3691 | 3770 | 3.771216 | ACAGGGCAAAATGAGTGATTCT | 58.229 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
3692 | 3771 | 5.126061 | ACATACAGGGCAAAATGAGTGATTC | 59.874 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3693 | 3772 | 5.018809 | ACATACAGGGCAAAATGAGTGATT | 58.981 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
3694 | 3773 | 4.603131 | ACATACAGGGCAAAATGAGTGAT | 58.397 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
3695 | 3774 | 4.032960 | ACATACAGGGCAAAATGAGTGA | 57.967 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
3696 | 3775 | 4.943705 | ACTACATACAGGGCAAAATGAGTG | 59.056 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
3697 | 3776 | 5.045578 | AGACTACATACAGGGCAAAATGAGT | 60.046 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3698 | 3777 | 5.431765 | AGACTACATACAGGGCAAAATGAG | 58.568 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
3699 | 3778 | 5.189736 | AGAGACTACATACAGGGCAAAATGA | 59.810 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3700 | 3779 | 5.431765 | AGAGACTACATACAGGGCAAAATG | 58.568 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
3701 | 3780 | 5.700402 | AGAGACTACATACAGGGCAAAAT | 57.300 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
3702 | 3781 | 6.808321 | ATAGAGACTACATACAGGGCAAAA | 57.192 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
3703 | 3782 | 6.408092 | CCAATAGAGACTACATACAGGGCAAA | 60.408 | 42.308 | 0.00 | 0.00 | 0.00 | 3.68 |
3704 | 3783 | 5.070446 | CCAATAGAGACTACATACAGGGCAA | 59.930 | 44.000 | 0.00 | 0.00 | 0.00 | 4.52 |
3705 | 3784 | 4.588951 | CCAATAGAGACTACATACAGGGCA | 59.411 | 45.833 | 0.00 | 0.00 | 0.00 | 5.36 |
3706 | 3785 | 4.833380 | TCCAATAGAGACTACATACAGGGC | 59.167 | 45.833 | 0.00 | 0.00 | 0.00 | 5.19 |
3707 | 3786 | 6.978674 | TTCCAATAGAGACTACATACAGGG | 57.021 | 41.667 | 0.00 | 0.00 | 0.00 | 4.45 |
3708 | 3787 | 7.957002 | ACATTCCAATAGAGACTACATACAGG | 58.043 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
3709 | 3788 | 8.855110 | AGACATTCCAATAGAGACTACATACAG | 58.145 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
3710 | 3789 | 8.768501 | AGACATTCCAATAGAGACTACATACA | 57.231 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
3717 | 3796 | 9.660180 | GTCTTTTTAGACATTCCAATAGAGACT | 57.340 | 33.333 | 0.00 | 0.00 | 38.59 | 3.24 |
3718 | 3797 | 9.660180 | AGTCTTTTTAGACATTCCAATAGAGAC | 57.340 | 33.333 | 7.92 | 0.00 | 41.02 | 3.36 |
3719 | 3798 | 9.658799 | CAGTCTTTTTAGACATTCCAATAGAGA | 57.341 | 33.333 | 7.92 | 0.00 | 41.02 | 3.10 |
3720 | 3799 | 8.394121 | GCAGTCTTTTTAGACATTCCAATAGAG | 58.606 | 37.037 | 7.92 | 0.00 | 41.02 | 2.43 |
3721 | 3800 | 8.103305 | AGCAGTCTTTTTAGACATTCCAATAGA | 58.897 | 33.333 | 7.92 | 0.00 | 41.02 | 1.98 |
3722 | 3801 | 8.273780 | AGCAGTCTTTTTAGACATTCCAATAG | 57.726 | 34.615 | 7.92 | 0.00 | 41.02 | 1.73 |
3723 | 3802 | 9.905713 | ATAGCAGTCTTTTTAGACATTCCAATA | 57.094 | 29.630 | 7.92 | 0.00 | 41.02 | 1.90 |
3724 | 3803 | 8.814038 | ATAGCAGTCTTTTTAGACATTCCAAT | 57.186 | 30.769 | 7.92 | 0.00 | 41.02 | 3.16 |
3725 | 3804 | 8.635765 | AATAGCAGTCTTTTTAGACATTCCAA | 57.364 | 30.769 | 7.92 | 0.00 | 41.02 | 3.53 |
3726 | 3805 | 8.635765 | AAATAGCAGTCTTTTTAGACATTCCA | 57.364 | 30.769 | 7.92 | 0.00 | 41.02 | 3.53 |
3729 | 3808 | 9.959721 | TCCTAAATAGCAGTCTTTTTAGACATT | 57.040 | 29.630 | 13.20 | 0.00 | 41.90 | 2.71 |
3730 | 3809 | 9.959721 | TTCCTAAATAGCAGTCTTTTTAGACAT | 57.040 | 29.630 | 13.20 | 0.00 | 41.90 | 3.06 |
3731 | 3810 | 9.216117 | GTTCCTAAATAGCAGTCTTTTTAGACA | 57.784 | 33.333 | 13.20 | 2.26 | 41.90 | 3.41 |
3732 | 3811 | 8.381387 | CGTTCCTAAATAGCAGTCTTTTTAGAC | 58.619 | 37.037 | 13.20 | 0.00 | 41.90 | 2.59 |
3733 | 3812 | 7.548075 | CCGTTCCTAAATAGCAGTCTTTTTAGA | 59.452 | 37.037 | 13.20 | 0.00 | 41.90 | 2.10 |
3734 | 3813 | 7.548075 | TCCGTTCCTAAATAGCAGTCTTTTTAG | 59.452 | 37.037 | 7.71 | 7.71 | 40.46 | 1.85 |
3735 | 3814 | 7.388437 | TCCGTTCCTAAATAGCAGTCTTTTTA | 58.612 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
3736 | 3815 | 6.235664 | TCCGTTCCTAAATAGCAGTCTTTTT | 58.764 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
3737 | 3816 | 5.801380 | TCCGTTCCTAAATAGCAGTCTTTT | 58.199 | 37.500 | 0.00 | 0.00 | 0.00 | 2.27 |
3738 | 3817 | 5.416271 | TCCGTTCCTAAATAGCAGTCTTT | 57.584 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
3739 | 3818 | 4.141914 | CCTCCGTTCCTAAATAGCAGTCTT | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
3740 | 3819 | 3.385111 | CCTCCGTTCCTAAATAGCAGTCT | 59.615 | 47.826 | 0.00 | 0.00 | 0.00 | 3.24 |
3741 | 3820 | 3.492829 | CCCTCCGTTCCTAAATAGCAGTC | 60.493 | 52.174 | 0.00 | 0.00 | 0.00 | 3.51 |
3742 | 3821 | 2.434702 | CCCTCCGTTCCTAAATAGCAGT | 59.565 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3743 | 3822 | 2.698797 | TCCCTCCGTTCCTAAATAGCAG | 59.301 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
3744 | 3823 | 2.698797 | CTCCCTCCGTTCCTAAATAGCA | 59.301 | 50.000 | 0.00 | 0.00 | 0.00 | 3.49 |
3745 | 3824 | 2.699321 | ACTCCCTCCGTTCCTAAATAGC | 59.301 | 50.000 | 0.00 | 0.00 | 0.00 | 2.97 |
3746 | 3825 | 6.667558 | AATACTCCCTCCGTTCCTAAATAG | 57.332 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
3747 | 3826 | 7.300658 | ACTAATACTCCCTCCGTTCCTAAATA | 58.699 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
3748 | 3827 | 6.141790 | ACTAATACTCCCTCCGTTCCTAAAT | 58.858 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3749 | 3828 | 5.522641 | ACTAATACTCCCTCCGTTCCTAAA | 58.477 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
3750 | 3829 | 5.134725 | ACTAATACTCCCTCCGTTCCTAA | 57.865 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
3751 | 3830 | 4.803329 | ACTAATACTCCCTCCGTTCCTA | 57.197 | 45.455 | 0.00 | 0.00 | 0.00 | 2.94 |
3752 | 3831 | 3.684408 | ACTAATACTCCCTCCGTTCCT | 57.316 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
3753 | 3832 | 5.221402 | CCTTAACTAATACTCCCTCCGTTCC | 60.221 | 48.000 | 0.00 | 0.00 | 0.00 | 3.62 |
3754 | 3833 | 5.738495 | GCCTTAACTAATACTCCCTCCGTTC | 60.738 | 48.000 | 0.00 | 0.00 | 0.00 | 3.95 |
3755 | 3834 | 4.100653 | GCCTTAACTAATACTCCCTCCGTT | 59.899 | 45.833 | 0.00 | 0.00 | 0.00 | 4.44 |
3756 | 3835 | 3.640498 | GCCTTAACTAATACTCCCTCCGT | 59.360 | 47.826 | 0.00 | 0.00 | 0.00 | 4.69 |
3757 | 3836 | 3.006644 | GGCCTTAACTAATACTCCCTCCG | 59.993 | 52.174 | 0.00 | 0.00 | 0.00 | 4.63 |
3758 | 3837 | 4.040584 | CAGGCCTTAACTAATACTCCCTCC | 59.959 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3759 | 3838 | 4.654724 | ACAGGCCTTAACTAATACTCCCTC | 59.345 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
3760 | 3839 | 4.632292 | ACAGGCCTTAACTAATACTCCCT | 58.368 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
3761 | 3840 | 5.366460 | GAACAGGCCTTAACTAATACTCCC | 58.634 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
3762 | 3841 | 5.366460 | GGAACAGGCCTTAACTAATACTCC | 58.634 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
3763 | 3842 | 5.048507 | CGGAACAGGCCTTAACTAATACTC | 58.951 | 45.833 | 0.00 | 0.00 | 0.00 | 2.59 |
3764 | 3843 | 4.713321 | TCGGAACAGGCCTTAACTAATACT | 59.287 | 41.667 | 0.00 | 0.00 | 0.00 | 2.12 |
3765 | 3844 | 5.014808 | TCGGAACAGGCCTTAACTAATAC | 57.985 | 43.478 | 0.00 | 0.00 | 0.00 | 1.89 |
3766 | 3845 | 5.680594 | TTCGGAACAGGCCTTAACTAATA | 57.319 | 39.130 | 0.00 | 0.00 | 0.00 | 0.98 |
3767 | 3846 | 4.563140 | TTCGGAACAGGCCTTAACTAAT | 57.437 | 40.909 | 0.00 | 0.00 | 0.00 | 1.73 |
3919 | 3998 | 5.593909 | TGACAAAAGATTCCAAAAGAGCTCA | 59.406 | 36.000 | 17.77 | 0.00 | 0.00 | 4.26 |
4287 | 4369 | 5.186256 | TGGATATGACCAAAGTAAAGGCA | 57.814 | 39.130 | 0.00 | 0.00 | 36.96 | 4.75 |
4622 | 4745 | 8.173130 | GTCTTAATTACTATTTTGGTCACACCG | 58.827 | 37.037 | 0.00 | 0.00 | 42.58 | 4.94 |
4942 | 5065 | 5.501897 | CGCTTCTTGTAACTCTGAAAACGTT | 60.502 | 40.000 | 0.00 | 0.00 | 0.00 | 3.99 |
4943 | 5066 | 4.025979 | CGCTTCTTGTAACTCTGAAAACGT | 60.026 | 41.667 | 0.00 | 0.00 | 0.00 | 3.99 |
5052 | 5175 | 8.507470 | TTGAATCGATGAGTAATGACTATTCG | 57.493 | 34.615 | 0.00 | 7.63 | 39.65 | 3.34 |
5116 | 5239 | 2.156343 | AAGCTCGTTCTGTTCAGGAC | 57.844 | 50.000 | 1.43 | 1.43 | 0.00 | 3.85 |
5173 | 5296 | 7.503549 | ACATAACATCAGCATCTACAGAATCA | 58.496 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
5226 | 5349 | 8.626526 | CAATCATCAGATGTGAATAATGGTTCA | 58.373 | 33.333 | 10.34 | 0.00 | 35.88 | 3.18 |
5286 | 5409 | 7.664082 | AAAGAACAATCTATATGCATCTCCG | 57.336 | 36.000 | 0.19 | 0.00 | 33.77 | 4.63 |
5301 | 5424 | 9.830975 | AACTACCAAGCAAATTAAAAGAACAAT | 57.169 | 25.926 | 0.00 | 0.00 | 0.00 | 2.71 |
5305 | 5428 | 7.225734 | GGCAAACTACCAAGCAAATTAAAAGAA | 59.774 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
5308 | 5431 | 5.463724 | CGGCAAACTACCAAGCAAATTAAAA | 59.536 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
5332 | 5455 | 5.048643 | GGTTTCCTGCTCTCCTAAAGAAAAC | 60.049 | 44.000 | 0.00 | 0.00 | 32.53 | 2.43 |
5337 | 5460 | 3.703001 | TGGTTTCCTGCTCTCCTAAAG | 57.297 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
5408 | 5598 | 3.073678 | CGGATCCACACAAGATCAAACA | 58.926 | 45.455 | 13.41 | 0.00 | 41.64 | 2.83 |
5418 | 5608 | 5.943416 | AGATAATTTTTCACGGATCCACACA | 59.057 | 36.000 | 13.41 | 0.00 | 0.00 | 3.72 |
5419 | 5609 | 6.436843 | AGATAATTTTTCACGGATCCACAC | 57.563 | 37.500 | 13.41 | 0.00 | 0.00 | 3.82 |
5491 | 5763 | 6.485984 | GTGTGGCTAGATCATTGATTGAGATT | 59.514 | 38.462 | 0.00 | 0.00 | 37.89 | 2.40 |
5501 | 5773 | 6.182627 | TCAATTTGAGTGTGGCTAGATCATT | 58.817 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
5552 | 5826 | 7.148457 | ACGATGCTGCTAATCTATGAAATCATG | 60.148 | 37.037 | 6.17 | 0.00 | 37.15 | 3.07 |
5555 | 5829 | 6.718454 | ACGATGCTGCTAATCTATGAAATC | 57.282 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
5578 | 5852 | 6.941857 | TCTGCAATGTAAGGTTCTACATGTA | 58.058 | 36.000 | 5.25 | 5.25 | 40.79 | 2.29 |
5812 | 6087 | 1.457346 | CCATTCTTGCTCCAGGTCAC | 58.543 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
5901 | 6196 | 5.993441 | ACTGTAGCAGGTTTACGTACATTTT | 59.007 | 36.000 | 0.00 | 0.00 | 35.51 | 1.82 |
5910 | 6205 | 2.779506 | AGCCAACTGTAGCAGGTTTAC | 58.220 | 47.619 | 5.65 | 0.00 | 35.51 | 2.01 |
5931 | 6226 | 6.894682 | TGAGGTGCCATTGTTTATACAGATA | 58.105 | 36.000 | 0.00 | 0.00 | 35.28 | 1.98 |
5954 | 6249 | 5.578005 | ATCATGGACAGCTCATCTTTTTG | 57.422 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
5966 | 6261 | 4.080356 | TCCTAGGGAAACAATCATGGACAG | 60.080 | 45.833 | 9.46 | 0.00 | 0.00 | 3.51 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.