Multiple sequence alignment - TraesCS3B01G265600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G265600 chr3B 100.000 5859 0 0 1 5859 425392935 425387077 0.000000e+00 10820
1 TraesCS3B01G265600 chr3B 97.674 301 7 0 3245 3545 455128942 455129242 8.700000e-143 518
2 TraesCS3B01G265600 chr3B 87.955 357 35 5 1 354 59706686 59707037 1.170000e-111 414
3 TraesCS3B01G265600 chr3A 93.966 3497 119 37 560 4003 436461250 436464707 0.000000e+00 5204
4 TraesCS3B01G265600 chr3A 94.864 1285 45 11 4068 5341 436464706 436465980 0.000000e+00 1988
5 TraesCS3B01G265600 chr3A 95.939 394 16 0 3245 3638 743489441 743489048 1.780000e-179 640
6 TraesCS3B01G265600 chr3A 85.859 297 22 13 5565 5859 436466186 436466464 1.230000e-76 298
7 TraesCS3B01G265600 chr3D 92.742 2921 112 38 546 3422 299603546 299600682 0.000000e+00 4128
8 TraesCS3B01G265600 chr3D 94.457 1299 54 8 4113 5395 299599922 299598626 0.000000e+00 1984
9 TraesCS3B01G265600 chr3D 92.110 583 38 5 3429 4006 299600500 299599921 0.000000e+00 815
10 TraesCS3B01G265600 chr3D 91.368 475 22 7 5389 5859 299598535 299598076 2.980000e-177 632
11 TraesCS3B01G265600 chr1D 97.462 394 10 0 3245 3638 474450679 474450286 0.000000e+00 673
12 TraesCS3B01G265600 chr1D 81.047 401 35 23 4985 5376 265141550 265141182 1.240000e-71 281
13 TraesCS3B01G265600 chr1D 85.577 104 7 5 5362 5463 356580424 356580327 1.040000e-17 102
14 TraesCS3B01G265600 chr7D 97.208 394 11 0 3245 3638 426446258 426446651 0.000000e+00 667
15 TraesCS3B01G265600 chr7D 97.215 395 10 1 3245 3638 491875198 491874804 0.000000e+00 667
16 TraesCS3B01G265600 chr4D 97.208 394 11 0 3245 3638 25399746 25400139 0.000000e+00 667
17 TraesCS3B01G265600 chr4D 86.761 355 24 10 1 354 503640693 503640361 1.990000e-99 374
18 TraesCS3B01G265600 chr5D 95.373 389 18 0 3250 3638 385111801 385111413 2.320000e-173 619
19 TraesCS3B01G265600 chr4A 91.228 399 29 2 4393 4791 667775054 667775446 6.680000e-149 538
20 TraesCS3B01G265600 chr4A 88.177 203 14 6 5173 5371 667788543 667788739 3.530000e-57 233
21 TraesCS3B01G265600 chr4A 94.737 133 6 1 4783 4915 667787997 667788128 7.700000e-49 206
22 TraesCS3B01G265600 chr6A 95.062 324 13 2 3672 3992 222558702 222558379 1.880000e-139 507
23 TraesCS3B01G265600 chr6A 78.412 403 42 24 4985 5376 291917862 291918230 2.750000e-53 220
24 TraesCS3B01G265600 chr6A 87.755 98 6 3 5374 5469 337716918 337716825 6.210000e-20 110
25 TraesCS3B01G265600 chr6A 88.298 94 5 3 5373 5464 617249197 617249286 2.230000e-19 108
26 TraesCS3B01G265600 chr2A 91.216 296 24 2 5 300 753601443 753601736 9.150000e-108 401
27 TraesCS3B01G265600 chr7A 85.237 359 38 12 1 356 74890906 74890560 7.220000e-94 355
28 TraesCS3B01G265600 chr5B 91.732 254 20 1 1 253 690979698 690979951 9.340000e-93 351
29 TraesCS3B01G265600 chr1A 82.865 356 40 13 1 354 533215928 533216264 3.430000e-77 300
30 TraesCS3B01G265600 chr6D 86.219 283 26 7 73 354 263007436 263007706 1.600000e-75 294
31 TraesCS3B01G265600 chr6D 81.457 302 45 9 13 310 11103809 11103515 2.730000e-58 237
32 TraesCS3B01G265600 chrUn 83.934 305 43 6 28 331 29300105 29300404 2.670000e-73 287
33 TraesCS3B01G265600 chr2B 82.943 299 36 12 13 310 75838727 75838443 7.530000e-64 255
34 TraesCS3B01G265600 chr2D 86.869 99 7 5 5367 5463 82187248 82187154 8.030000e-19 106
35 TraesCS3B01G265600 chr2D 86.139 101 8 4 5372 5470 58513922 58514018 2.890000e-18 104
36 TraesCS3B01G265600 chr1B 86.869 99 7 3 5373 5469 634510163 634510069 8.030000e-19 106
37 TraesCS3B01G265600 chr7B 86.275 102 7 4 5373 5471 164155528 164155625 2.890000e-18 104
38 TraesCS3B01G265600 chr7B 86.869 99 6 4 5374 5469 726227063 726226969 2.890000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G265600 chr3B 425387077 425392935 5858 True 10820.000000 10820 100.00000 1 5859 1 chr3B.!!$R1 5858
1 TraesCS3B01G265600 chr3A 436461250 436466464 5214 False 2496.666667 5204 91.56300 560 5859 3 chr3A.!!$F1 5299
2 TraesCS3B01G265600 chr3D 299598076 299603546 5470 True 1889.750000 4128 92.66925 546 5859 4 chr3D.!!$R1 5313
3 TraesCS3B01G265600 chr4A 667787997 667788739 742 False 219.500000 233 91.45700 4783 5371 2 chr4A.!!$F2 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
332 333 0.109723 TGAAGGCGTTGCTAGGGTTT 59.890 50.0 0.00 0.0 0.00 3.27 F
866 874 0.318869 CTCTAGATCGCAGGCAGCAG 60.319 60.0 1.96 0.0 46.13 4.24 F
947 955 0.324460 TCCCCCGTTTCTCCTCTCTC 60.324 60.0 0.00 0.0 0.00 3.20 F
2158 2222 0.391661 TGATCTTTGCTCTCGGCCAC 60.392 55.0 2.24 0.0 40.92 5.01 F
3602 3846 0.165295 GGACCGCAGAAAAGTTACGC 59.835 55.0 0.00 0.0 0.00 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2167 2231 0.033366 TGCAGCTCGTTCTGTAAGCA 59.967 50.0 0.00 0.0 38.51 3.91 R
2295 2359 0.466372 GAGCAGAAGGGGCCATAACC 60.466 60.0 4.39 0.0 0.00 2.85 R
2296 2360 0.466372 GGAGCAGAAGGGGCCATAAC 60.466 60.0 4.39 0.0 0.00 1.89 R
3909 4157 0.583438 CGTCTGTTGTCAGCTTGGTG 59.417 55.0 0.00 0.0 41.10 4.17 R
4873 5165 0.178955 TGGGGTAGACGTGAACTGGA 60.179 55.0 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 2.892425 CCAGATCTGGCCGAACGC 60.892 66.667 28.45 0.00 44.73 4.84
196 197 4.899239 CCTAGAAGCCCGCGCCTG 62.899 72.222 0.00 0.00 34.57 4.85
209 210 4.785453 GCCTGCCGGACCAAGAGG 62.785 72.222 5.05 0.21 42.21 3.69
210 211 4.101448 CCTGCCGGACCAAGAGGG 62.101 72.222 5.05 0.00 44.81 4.30
211 212 4.101448 CTGCCGGACCAAGAGGGG 62.101 72.222 5.05 0.00 42.91 4.79
214 215 2.609610 CCGGACCAAGAGGGGGAA 60.610 66.667 0.00 0.00 42.91 3.97
215 216 2.670148 CCGGACCAAGAGGGGGAAG 61.670 68.421 0.00 0.00 42.91 3.46
216 217 2.670148 CGGACCAAGAGGGGGAAGG 61.670 68.421 0.00 0.00 42.91 3.46
217 218 1.229853 GGACCAAGAGGGGGAAGGA 60.230 63.158 0.00 0.00 42.91 3.36
218 219 1.275421 GGACCAAGAGGGGGAAGGAG 61.275 65.000 0.00 0.00 42.91 3.69
219 220 0.252742 GACCAAGAGGGGGAAGGAGA 60.253 60.000 0.00 0.00 42.91 3.71
220 221 0.252927 ACCAAGAGGGGGAAGGAGAG 60.253 60.000 0.00 0.00 42.91 3.20
221 222 0.985490 CCAAGAGGGGGAAGGAGAGG 60.985 65.000 0.00 0.00 0.00 3.69
222 223 0.985490 CAAGAGGGGGAAGGAGAGGG 60.985 65.000 0.00 0.00 0.00 4.30
223 224 2.770475 GAGGGGGAAGGAGAGGGC 60.770 72.222 0.00 0.00 0.00 5.19
224 225 4.439901 AGGGGGAAGGAGAGGGCC 62.440 72.222 0.00 0.00 0.00 5.80
253 254 4.603535 AGCACTGGCCGGGCTTTT 62.604 61.111 29.87 10.25 42.56 2.27
254 255 4.362476 GCACTGGCCGGGCTTTTG 62.362 66.667 29.87 22.10 0.00 2.44
255 256 4.362476 CACTGGCCGGGCTTTTGC 62.362 66.667 29.87 1.69 46.64 3.68
256 257 4.603535 ACTGGCCGGGCTTTTGCT 62.604 61.111 29.87 1.67 46.54 3.91
257 258 3.752339 CTGGCCGGGCTTTTGCTC 61.752 66.667 29.87 0.07 46.54 4.26
264 265 3.981308 GGCTTTTGCTCGCCAGTA 58.019 55.556 0.00 0.00 45.59 2.74
265 266 1.502190 GGCTTTTGCTCGCCAGTAC 59.498 57.895 0.00 0.00 45.59 2.73
266 267 1.132640 GCTTTTGCTCGCCAGTACG 59.867 57.895 0.00 0.00 43.35 3.67
267 268 1.566018 GCTTTTGCTCGCCAGTACGT 61.566 55.000 0.00 0.00 43.35 3.57
268 269 0.438830 CTTTTGCTCGCCAGTACGTC 59.561 55.000 0.00 0.00 0.00 4.34
269 270 1.279527 TTTTGCTCGCCAGTACGTCG 61.280 55.000 0.00 0.00 0.00 5.12
270 271 2.132517 TTTGCTCGCCAGTACGTCGA 62.133 55.000 0.00 0.00 0.00 4.20
272 273 2.403987 CTCGCCAGTACGTCGAGG 59.596 66.667 19.55 3.03 44.06 4.63
273 274 2.359107 TCGCCAGTACGTCGAGGT 60.359 61.111 15.89 15.89 0.00 3.85
274 275 2.202440 CGCCAGTACGTCGAGGTG 60.202 66.667 20.44 3.08 0.00 4.00
275 276 2.181021 GCCAGTACGTCGAGGTGG 59.819 66.667 20.44 13.96 0.00 4.61
276 277 2.181021 CCAGTACGTCGAGGTGGC 59.819 66.667 20.44 12.70 0.00 5.01
277 278 2.202440 CAGTACGTCGAGGTGGCG 60.202 66.667 20.44 5.91 0.00 5.69
278 279 3.437795 AGTACGTCGAGGTGGCGG 61.438 66.667 20.44 0.00 0.00 6.13
296 297 4.148825 CGACGGGAGGGAGGCTTG 62.149 72.222 0.00 0.00 0.00 4.01
297 298 2.683933 GACGGGAGGGAGGCTTGA 60.684 66.667 0.00 0.00 0.00 3.02
298 299 2.685380 ACGGGAGGGAGGCTTGAG 60.685 66.667 0.00 0.00 0.00 3.02
299 300 3.474570 CGGGAGGGAGGCTTGAGG 61.475 72.222 0.00 0.00 0.00 3.86
300 301 2.041265 GGGAGGGAGGCTTGAGGA 59.959 66.667 0.00 0.00 0.00 3.71
301 302 1.616628 GGGAGGGAGGCTTGAGGAA 60.617 63.158 0.00 0.00 0.00 3.36
302 303 1.631071 GGGAGGGAGGCTTGAGGAAG 61.631 65.000 0.00 0.00 0.00 3.46
303 304 1.631071 GGAGGGAGGCTTGAGGAAGG 61.631 65.000 0.00 0.00 0.00 3.46
304 305 1.617839 AGGGAGGCTTGAGGAAGGG 60.618 63.158 0.00 0.00 0.00 3.95
305 306 1.616628 GGGAGGCTTGAGGAAGGGA 60.617 63.158 0.00 0.00 0.00 4.20
306 307 1.631071 GGGAGGCTTGAGGAAGGGAG 61.631 65.000 0.00 0.00 0.00 4.30
307 308 1.631071 GGAGGCTTGAGGAAGGGAGG 61.631 65.000 0.00 0.00 0.00 4.30
308 309 1.617839 AGGCTTGAGGAAGGGAGGG 60.618 63.158 0.00 0.00 0.00 4.30
309 310 2.684499 GGCTTGAGGAAGGGAGGGG 61.684 68.421 0.00 0.00 0.00 4.79
310 311 2.684499 GCTTGAGGAAGGGAGGGGG 61.684 68.421 0.00 0.00 0.00 5.40
326 327 2.046314 GGGCTGAAGGCGTTGCTA 60.046 61.111 0.00 0.00 42.94 3.49
327 328 2.109126 GGGCTGAAGGCGTTGCTAG 61.109 63.158 0.00 0.00 42.94 3.42
328 329 2.109126 GGCTGAAGGCGTTGCTAGG 61.109 63.158 0.00 0.00 42.94 3.02
329 330 2.109126 GCTGAAGGCGTTGCTAGGG 61.109 63.158 0.00 0.00 0.00 3.53
330 331 1.296715 CTGAAGGCGTTGCTAGGGT 59.703 57.895 0.00 0.00 0.00 4.34
331 332 0.321653 CTGAAGGCGTTGCTAGGGTT 60.322 55.000 0.00 0.00 0.00 4.11
332 333 0.109723 TGAAGGCGTTGCTAGGGTTT 59.890 50.000 0.00 0.00 0.00 3.27
333 334 1.244816 GAAGGCGTTGCTAGGGTTTT 58.755 50.000 0.00 0.00 0.00 2.43
334 335 1.199327 GAAGGCGTTGCTAGGGTTTTC 59.801 52.381 0.00 0.00 0.00 2.29
335 336 0.608308 AGGCGTTGCTAGGGTTTTCC 60.608 55.000 0.00 0.00 39.75 3.13
345 346 2.675371 GGTTTTCCCCTAGGCGCT 59.325 61.111 7.64 0.00 0.00 5.92
346 347 1.451567 GGTTTTCCCCTAGGCGCTC 60.452 63.158 7.64 0.00 0.00 5.03
347 348 1.814169 GTTTTCCCCTAGGCGCTCG 60.814 63.158 7.64 0.00 0.00 5.03
348 349 3.675619 TTTTCCCCTAGGCGCTCGC 62.676 63.158 7.64 5.60 41.06 5.03
365 366 4.733725 CGGGAGGGAAGGGGGACA 62.734 72.222 0.00 0.00 0.00 4.02
366 367 3.015753 GGGAGGGAAGGGGGACAC 61.016 72.222 0.00 0.00 0.00 3.67
367 368 2.204090 GGAGGGAAGGGGGACACA 60.204 66.667 0.00 0.00 0.00 3.72
368 369 1.619669 GGAGGGAAGGGGGACACAT 60.620 63.158 0.00 0.00 0.00 3.21
369 370 1.214992 GGAGGGAAGGGGGACACATT 61.215 60.000 0.00 0.00 0.00 2.71
370 371 1.591768 GAGGGAAGGGGGACACATTA 58.408 55.000 0.00 0.00 0.00 1.90
371 372 1.920351 GAGGGAAGGGGGACACATTAA 59.080 52.381 0.00 0.00 0.00 1.40
372 373 2.310647 GAGGGAAGGGGGACACATTAAA 59.689 50.000 0.00 0.00 0.00 1.52
373 374 2.933139 AGGGAAGGGGGACACATTAAAT 59.067 45.455 0.00 0.00 0.00 1.40
374 375 3.339742 AGGGAAGGGGGACACATTAAATT 59.660 43.478 0.00 0.00 0.00 1.82
375 376 4.101114 GGGAAGGGGGACACATTAAATTT 58.899 43.478 0.00 0.00 0.00 1.82
376 377 4.534500 GGGAAGGGGGACACATTAAATTTT 59.466 41.667 0.00 0.00 0.00 1.82
377 378 5.722441 GGGAAGGGGGACACATTAAATTTTA 59.278 40.000 0.00 0.00 0.00 1.52
378 379 6.351541 GGGAAGGGGGACACATTAAATTTTAC 60.352 42.308 0.00 0.00 0.00 2.01
379 380 6.211785 GGAAGGGGGACACATTAAATTTTACA 59.788 38.462 0.00 0.00 0.00 2.41
380 381 7.256368 GGAAGGGGGACACATTAAATTTTACAA 60.256 37.037 0.00 0.00 0.00 2.41
381 382 7.239763 AGGGGGACACATTAAATTTTACAAG 57.760 36.000 0.00 0.00 0.00 3.16
382 383 6.212589 AGGGGGACACATTAAATTTTACAAGG 59.787 38.462 0.00 0.00 0.00 3.61
383 384 6.211785 GGGGGACACATTAAATTTTACAAGGA 59.788 38.462 0.00 0.00 0.00 3.36
384 385 7.256368 GGGGGACACATTAAATTTTACAAGGAA 60.256 37.037 0.00 0.00 0.00 3.36
385 386 7.817478 GGGGACACATTAAATTTTACAAGGAAG 59.183 37.037 0.00 0.00 0.00 3.46
386 387 7.817478 GGGACACATTAAATTTTACAAGGAAGG 59.183 37.037 0.00 0.00 0.00 3.46
387 388 8.364894 GGACACATTAAATTTTACAAGGAAGGT 58.635 33.333 0.00 0.00 0.00 3.50
388 389 9.191995 GACACATTAAATTTTACAAGGAAGGTG 57.808 33.333 9.59 9.59 34.34 4.00
389 390 8.919145 ACACATTAAATTTTACAAGGAAGGTGA 58.081 29.630 15.41 0.00 32.95 4.02
390 391 9.757227 CACATTAAATTTTACAAGGAAGGTGAA 57.243 29.630 6.56 0.00 30.88 3.18
395 396 7.654022 AATTTTACAAGGAAGGTGAAAGACA 57.346 32.000 0.00 0.00 29.07 3.41
396 397 7.654022 ATTTTACAAGGAAGGTGAAAGACAA 57.346 32.000 0.00 0.00 29.07 3.18
397 398 7.654022 TTTTACAAGGAAGGTGAAAGACAAT 57.346 32.000 0.00 0.00 0.00 2.71
398 399 8.754991 TTTTACAAGGAAGGTGAAAGACAATA 57.245 30.769 0.00 0.00 0.00 1.90
399 400 8.934023 TTTACAAGGAAGGTGAAAGACAATAT 57.066 30.769 0.00 0.00 0.00 1.28
400 401 6.824305 ACAAGGAAGGTGAAAGACAATATG 57.176 37.500 0.00 0.00 0.00 1.78
401 402 6.306987 ACAAGGAAGGTGAAAGACAATATGT 58.693 36.000 0.00 0.00 0.00 2.29
402 403 6.777580 ACAAGGAAGGTGAAAGACAATATGTT 59.222 34.615 0.00 0.00 0.00 2.71
403 404 6.824305 AGGAAGGTGAAAGACAATATGTTG 57.176 37.500 0.00 0.00 41.20 3.33
416 417 6.194796 ACAATATGTTGTTTTGATCCTCGG 57.805 37.500 1.42 0.00 46.07 4.63
417 418 5.710099 ACAATATGTTGTTTTGATCCTCGGT 59.290 36.000 1.42 0.00 46.07 4.69
418 419 6.208599 ACAATATGTTGTTTTGATCCTCGGTT 59.791 34.615 1.42 0.00 46.07 4.44
419 420 6.834168 ATATGTTGTTTTGATCCTCGGTTT 57.166 33.333 0.00 0.00 0.00 3.27
420 421 7.931578 ATATGTTGTTTTGATCCTCGGTTTA 57.068 32.000 0.00 0.00 0.00 2.01
421 422 5.682943 TGTTGTTTTGATCCTCGGTTTAG 57.317 39.130 0.00 0.00 0.00 1.85
422 423 5.369833 TGTTGTTTTGATCCTCGGTTTAGA 58.630 37.500 0.00 0.00 0.00 2.10
423 424 5.823570 TGTTGTTTTGATCCTCGGTTTAGAA 59.176 36.000 0.00 0.00 0.00 2.10
424 425 6.017440 TGTTGTTTTGATCCTCGGTTTAGAAG 60.017 38.462 0.00 0.00 0.00 2.85
425 426 5.617252 TGTTTTGATCCTCGGTTTAGAAGT 58.383 37.500 0.00 0.00 0.00 3.01
426 427 5.468746 TGTTTTGATCCTCGGTTTAGAAGTG 59.531 40.000 0.00 0.00 0.00 3.16
427 428 3.247006 TGATCCTCGGTTTAGAAGTGC 57.753 47.619 0.00 0.00 0.00 4.40
428 429 2.565391 TGATCCTCGGTTTAGAAGTGCA 59.435 45.455 0.00 0.00 0.00 4.57
429 430 3.007506 TGATCCTCGGTTTAGAAGTGCAA 59.992 43.478 0.00 0.00 0.00 4.08
430 431 3.478857 TCCTCGGTTTAGAAGTGCAAA 57.521 42.857 0.00 0.00 0.00 3.68
431 432 3.811083 TCCTCGGTTTAGAAGTGCAAAA 58.189 40.909 0.00 0.00 0.00 2.44
432 433 4.200874 TCCTCGGTTTAGAAGTGCAAAAA 58.799 39.130 0.00 0.00 0.00 1.94
433 434 4.274950 TCCTCGGTTTAGAAGTGCAAAAAG 59.725 41.667 0.00 0.00 0.00 2.27
434 435 4.036380 CCTCGGTTTAGAAGTGCAAAAAGT 59.964 41.667 0.00 0.00 0.00 2.66
435 436 4.915704 TCGGTTTAGAAGTGCAAAAAGTG 58.084 39.130 0.00 0.00 0.00 3.16
436 437 4.396790 TCGGTTTAGAAGTGCAAAAAGTGT 59.603 37.500 0.00 0.00 0.00 3.55
437 438 4.733405 CGGTTTAGAAGTGCAAAAAGTGTC 59.267 41.667 0.00 0.00 0.00 3.67
438 439 5.448632 CGGTTTAGAAGTGCAAAAAGTGTCT 60.449 40.000 0.00 0.00 0.00 3.41
439 440 6.238266 CGGTTTAGAAGTGCAAAAAGTGTCTA 60.238 38.462 0.00 0.00 0.00 2.59
440 441 7.519970 CGGTTTAGAAGTGCAAAAAGTGTCTAT 60.520 37.037 0.00 0.00 0.00 1.98
441 442 7.591426 GGTTTAGAAGTGCAAAAAGTGTCTATG 59.409 37.037 0.00 0.00 0.00 2.23
442 443 8.342634 GTTTAGAAGTGCAAAAAGTGTCTATGA 58.657 33.333 0.00 0.00 0.00 2.15
443 444 8.621532 TTAGAAGTGCAAAAAGTGTCTATGAT 57.378 30.769 0.00 0.00 0.00 2.45
444 445 7.516198 AGAAGTGCAAAAAGTGTCTATGATT 57.484 32.000 0.00 0.00 0.00 2.57
445 446 7.945134 AGAAGTGCAAAAAGTGTCTATGATTT 58.055 30.769 0.00 0.00 0.00 2.17
446 447 8.416329 AGAAGTGCAAAAAGTGTCTATGATTTT 58.584 29.630 0.00 0.00 0.00 1.82
447 448 8.947055 AAGTGCAAAAAGTGTCTATGATTTTT 57.053 26.923 0.00 0.00 35.75 1.94
448 449 8.579682 AGTGCAAAAAGTGTCTATGATTTTTC 57.420 30.769 0.00 0.00 33.73 2.29
449 450 8.196771 AGTGCAAAAAGTGTCTATGATTTTTCA 58.803 29.630 0.00 0.00 33.73 2.69
450 451 8.482429 GTGCAAAAAGTGTCTATGATTTTTCAG 58.518 33.333 0.00 0.00 33.73 3.02
451 452 7.169645 TGCAAAAAGTGTCTATGATTTTTCAGC 59.830 33.333 0.00 0.00 33.73 4.26
452 453 7.383300 GCAAAAAGTGTCTATGATTTTTCAGCT 59.617 33.333 0.00 0.00 33.73 4.24
453 454 8.697067 CAAAAAGTGTCTATGATTTTTCAGCTG 58.303 33.333 7.63 7.63 33.73 4.24
454 455 7.516198 AAAGTGTCTATGATTTTTCAGCTGT 57.484 32.000 14.67 0.00 0.00 4.40
455 456 7.516198 AAGTGTCTATGATTTTTCAGCTGTT 57.484 32.000 14.67 0.00 0.00 3.16
456 457 8.621532 AAGTGTCTATGATTTTTCAGCTGTTA 57.378 30.769 14.67 0.00 0.00 2.41
457 458 8.621532 AGTGTCTATGATTTTTCAGCTGTTAA 57.378 30.769 14.67 6.77 0.00 2.01
458 459 8.507249 AGTGTCTATGATTTTTCAGCTGTTAAC 58.493 33.333 14.67 0.00 0.00 2.01
459 460 8.507249 GTGTCTATGATTTTTCAGCTGTTAACT 58.493 33.333 14.67 3.52 0.00 2.24
460 461 9.066892 TGTCTATGATTTTTCAGCTGTTAACTT 57.933 29.630 14.67 0.00 0.00 2.66
461 462 9.899226 GTCTATGATTTTTCAGCTGTTAACTTT 57.101 29.630 14.67 0.00 0.00 2.66
464 465 8.947055 ATGATTTTTCAGCTGTTAACTTTTGT 57.053 26.923 14.67 0.00 0.00 2.83
466 467 9.296400 TGATTTTTCAGCTGTTAACTTTTGTAC 57.704 29.630 14.67 0.00 0.00 2.90
467 468 7.728580 TTTTTCAGCTGTTAACTTTTGTACG 57.271 32.000 14.67 0.00 0.00 3.67
468 469 6.665474 TTTCAGCTGTTAACTTTTGTACGA 57.335 33.333 14.67 0.00 0.00 3.43
469 470 6.665474 TTCAGCTGTTAACTTTTGTACGAA 57.335 33.333 14.67 0.00 0.00 3.85
470 471 6.665474 TCAGCTGTTAACTTTTGTACGAAA 57.335 33.333 14.67 8.03 0.00 3.46
471 472 6.480285 TCAGCTGTTAACTTTTGTACGAAAC 58.520 36.000 14.67 0.00 0.00 2.78
472 473 6.092396 TCAGCTGTTAACTTTTGTACGAAACA 59.908 34.615 14.67 1.14 35.88 2.83
473 474 6.193959 CAGCTGTTAACTTTTGTACGAAACAC 59.806 38.462 5.25 1.00 38.00 3.32
474 475 6.093082 AGCTGTTAACTTTTGTACGAAACACT 59.907 34.615 7.22 0.68 38.00 3.55
475 476 7.278424 AGCTGTTAACTTTTGTACGAAACACTA 59.722 33.333 7.22 0.00 38.00 2.74
476 477 8.066000 GCTGTTAACTTTTGTACGAAACACTAT 58.934 33.333 7.22 0.00 38.00 2.12
477 478 9.925268 CTGTTAACTTTTGTACGAAACACTATT 57.075 29.630 7.22 0.00 38.00 1.73
482 483 8.831000 ACTTTTGTACGAAACACTATTTTCAC 57.169 30.769 4.04 0.00 38.00 3.18
483 484 8.452534 ACTTTTGTACGAAACACTATTTTCACA 58.547 29.630 4.04 0.00 38.00 3.58
484 485 9.445786 CTTTTGTACGAAACACTATTTTCACAT 57.554 29.630 4.04 0.00 38.00 3.21
485 486 8.775220 TTTGTACGAAACACTATTTTCACATG 57.225 30.769 0.00 0.00 38.00 3.21
486 487 7.485418 TGTACGAAACACTATTTTCACATGT 57.515 32.000 0.00 0.00 35.54 3.21
487 488 8.590719 TGTACGAAACACTATTTTCACATGTA 57.409 30.769 0.00 0.00 35.54 2.29
488 489 8.705134 TGTACGAAACACTATTTTCACATGTAG 58.295 33.333 0.00 0.00 35.54 2.74
489 490 7.956420 ACGAAACACTATTTTCACATGTAGA 57.044 32.000 0.00 0.00 35.54 2.59
490 491 7.793902 ACGAAACACTATTTTCACATGTAGAC 58.206 34.615 0.00 0.00 35.54 2.59
491 492 7.439955 ACGAAACACTATTTTCACATGTAGACA 59.560 33.333 0.00 0.00 35.54 3.41
492 493 7.740346 CGAAACACTATTTTCACATGTAGACAC 59.260 37.037 0.00 0.00 35.54 3.67
493 494 8.677148 AAACACTATTTTCACATGTAGACACT 57.323 30.769 0.00 0.00 0.00 3.55
494 495 8.677148 AACACTATTTTCACATGTAGACACTT 57.323 30.769 0.00 0.00 0.00 3.16
495 496 8.677148 ACACTATTTTCACATGTAGACACTTT 57.323 30.769 0.00 0.00 0.00 2.66
496 497 9.772973 ACACTATTTTCACATGTAGACACTTTA 57.227 29.630 0.00 0.00 0.00 1.85
532 533 9.216117 ACATAATATATAAACCGAGGAGCAAAC 57.784 33.333 0.00 0.00 0.00 2.93
533 534 9.214957 CATAATATATAAACCGAGGAGCAAACA 57.785 33.333 0.00 0.00 0.00 2.83
534 535 9.787435 ATAATATATAAACCGAGGAGCAAACAA 57.213 29.630 0.00 0.00 0.00 2.83
535 536 7.730364 ATATATAAACCGAGGAGCAAACAAG 57.270 36.000 0.00 0.00 0.00 3.16
536 537 0.668535 AAACCGAGGAGCAAACAAGC 59.331 50.000 0.00 0.00 0.00 4.01
537 538 1.172812 AACCGAGGAGCAAACAAGCC 61.173 55.000 0.00 0.00 34.23 4.35
538 539 1.600636 CCGAGGAGCAAACAAGCCA 60.601 57.895 0.00 0.00 34.23 4.75
539 540 1.172180 CCGAGGAGCAAACAAGCCAA 61.172 55.000 0.00 0.00 34.23 4.52
540 541 0.667993 CGAGGAGCAAACAAGCCAAA 59.332 50.000 0.00 0.00 34.23 3.28
541 542 1.600413 CGAGGAGCAAACAAGCCAAAC 60.600 52.381 0.00 0.00 34.23 2.93
542 543 1.408702 GAGGAGCAAACAAGCCAAACA 59.591 47.619 0.00 0.00 34.23 2.83
543 544 1.830477 AGGAGCAAACAAGCCAAACAA 59.170 42.857 0.00 0.00 34.23 2.83
544 545 2.159057 AGGAGCAAACAAGCCAAACAAG 60.159 45.455 0.00 0.00 34.23 3.16
591 592 2.825532 ACATGAATGTTTACCCAGCACC 59.174 45.455 0.00 0.00 37.90 5.01
604 606 2.104111 CCCAGCACCACCGATTTATCTA 59.896 50.000 0.00 0.00 0.00 1.98
617 619 6.986817 ACCGATTTATCTATGTTCTCACAAGG 59.013 38.462 0.00 0.00 36.16 3.61
658 660 7.059202 AGAAAAGACAAGGCATCTGAATTTT 57.941 32.000 0.00 0.00 0.00 1.82
685 687 2.294233 CTGCAAAGCAACAGCCTAGAAA 59.706 45.455 0.00 0.00 38.41 2.52
810 818 3.002656 CCAACTTATACTTGCTCGGCATG 59.997 47.826 9.25 9.25 38.76 4.06
812 820 1.532868 CTTATACTTGCTCGGCATGGC 59.467 52.381 9.69 9.69 38.76 4.40
815 823 0.815213 TACTTGCTCGGCATGGCATC 60.815 55.000 20.37 7.70 38.76 3.91
827 835 2.673043 GCATGGCATCCTGACAAACAAG 60.673 50.000 0.00 0.00 39.86 3.16
834 842 3.281727 TCCTGACAAACAAGAGCAGTT 57.718 42.857 0.00 0.00 0.00 3.16
847 855 2.032924 AGAGCAGTTTGCCGTTTGTTAC 59.967 45.455 0.00 0.00 46.52 2.50
848 856 2.021457 AGCAGTTTGCCGTTTGTTACT 58.979 42.857 0.00 0.00 46.52 2.24
849 857 2.032924 AGCAGTTTGCCGTTTGTTACTC 59.967 45.455 0.00 0.00 46.52 2.59
850 858 2.032924 GCAGTTTGCCGTTTGTTACTCT 59.967 45.455 0.00 0.00 37.42 3.24
851 859 3.249080 GCAGTTTGCCGTTTGTTACTCTA 59.751 43.478 0.00 0.00 37.42 2.43
852 860 4.610680 GCAGTTTGCCGTTTGTTACTCTAG 60.611 45.833 0.00 0.00 37.42 2.43
854 862 5.408604 CAGTTTGCCGTTTGTTACTCTAGAT 59.591 40.000 0.00 0.00 0.00 1.98
855 863 5.638234 AGTTTGCCGTTTGTTACTCTAGATC 59.362 40.000 0.00 0.00 0.00 2.75
856 864 3.766151 TGCCGTTTGTTACTCTAGATCG 58.234 45.455 0.00 0.00 0.00 3.69
857 865 2.534757 GCCGTTTGTTACTCTAGATCGC 59.465 50.000 0.00 0.00 0.00 4.58
858 866 3.766151 CCGTTTGTTACTCTAGATCGCA 58.234 45.455 0.00 0.00 0.00 5.10
859 867 3.791887 CCGTTTGTTACTCTAGATCGCAG 59.208 47.826 0.00 0.00 0.00 5.18
860 868 3.791887 CGTTTGTTACTCTAGATCGCAGG 59.208 47.826 0.00 0.00 0.00 4.85
861 869 3.438297 TTGTTACTCTAGATCGCAGGC 57.562 47.619 0.00 0.00 0.00 4.85
862 870 2.375146 TGTTACTCTAGATCGCAGGCA 58.625 47.619 0.00 0.00 0.00 4.75
863 871 2.359214 TGTTACTCTAGATCGCAGGCAG 59.641 50.000 0.00 0.00 0.00 4.85
864 872 0.955178 TACTCTAGATCGCAGGCAGC 59.045 55.000 0.00 0.00 40.87 5.25
865 873 1.039785 ACTCTAGATCGCAGGCAGCA 61.040 55.000 1.96 0.00 46.13 4.41
866 874 0.318869 CTCTAGATCGCAGGCAGCAG 60.319 60.000 1.96 0.00 46.13 4.24
867 875 1.039785 TCTAGATCGCAGGCAGCAGT 61.040 55.000 1.96 0.00 46.13 4.40
868 876 0.670706 CTAGATCGCAGGCAGCAGTA 59.329 55.000 1.96 0.00 46.13 2.74
946 954 0.324830 CTCCCCCGTTTCTCCTCTCT 60.325 60.000 0.00 0.00 0.00 3.10
947 955 0.324460 TCCCCCGTTTCTCCTCTCTC 60.324 60.000 0.00 0.00 0.00 3.20
957 965 5.119694 GTTTCTCCTCTCTCTCTCTCTCTC 58.880 50.000 0.00 0.00 0.00 3.20
988 996 3.003173 CTCTCCCCTTCACCGGCA 61.003 66.667 0.00 0.00 0.00 5.69
1406 1446 2.754658 TCTCCGTCCTTCGCTCCC 60.755 66.667 0.00 0.00 38.35 4.30
1428 1468 1.373570 GTCATCACCTGTAAGCTGCC 58.626 55.000 0.00 0.00 0.00 4.85
1453 1493 2.128771 TGCCTCCCTAATGCTGTTTC 57.871 50.000 0.00 0.00 0.00 2.78
1461 1501 0.521291 TAATGCTGTTTCACTGCGCC 59.479 50.000 4.18 0.00 44.63 6.53
1479 1519 1.175983 CCAAACGGCCCAGTTGCTAA 61.176 55.000 0.00 0.00 34.14 3.09
1512 1552 1.763968 TCTGTATCTGTCTGGGTCGG 58.236 55.000 0.00 0.00 0.00 4.79
1547 1587 1.037579 CATCCCCCGAGCCCTTTTTC 61.038 60.000 0.00 0.00 0.00 2.29
1572 1618 9.771534 TCTTTTCTTTTCTTTTCTTTGGACAAA 57.228 25.926 0.00 0.00 0.00 2.83
1733 1785 6.260271 GGGGGAGACGATGAAACTTTTATTAG 59.740 42.308 0.00 0.00 0.00 1.73
1761 1818 2.202566 GGAAGTATAAGTGTCGCCTGC 58.797 52.381 0.00 0.00 0.00 4.85
1814 1878 8.658171 TTTATTTAGTTAAACCGCGTCATTTC 57.342 30.769 4.92 0.00 0.00 2.17
1818 1882 3.187842 AGTTAAACCGCGTCATTTCCTTC 59.812 43.478 4.92 0.00 0.00 3.46
1875 1939 6.780706 AATTTTCGGTACAGTTACAGTCTG 57.219 37.500 0.00 0.00 38.68 3.51
1909 1973 5.425217 TCATCAGATTCCACTAACCTGCTAA 59.575 40.000 0.00 0.00 0.00 3.09
2002 2066 1.494721 ACCTTCTGTTCCTTGGCTTCA 59.505 47.619 0.00 0.00 0.00 3.02
2105 2169 6.995091 GGATCACAGGCTAAATATGAAGAAGT 59.005 38.462 0.00 0.00 0.00 3.01
2158 2222 0.391661 TGATCTTTGCTCTCGGCCAC 60.392 55.000 2.24 0.00 40.92 5.01
2167 2231 1.308998 CTCTCGGCCACTTTGTTGTT 58.691 50.000 2.24 0.00 0.00 2.83
2266 2330 3.377485 GCTTGAATCTCACTGCACATGAT 59.623 43.478 0.00 0.00 0.00 2.45
2290 2354 5.304101 TGGATTGCTGTTTCTGTTTGGTATT 59.696 36.000 0.00 0.00 0.00 1.89
2291 2355 6.183360 TGGATTGCTGTTTCTGTTTGGTATTT 60.183 34.615 0.00 0.00 0.00 1.40
2292 2356 7.014711 TGGATTGCTGTTTCTGTTTGGTATTTA 59.985 33.333 0.00 0.00 0.00 1.40
2293 2357 8.034804 GGATTGCTGTTTCTGTTTGGTATTTAT 58.965 33.333 0.00 0.00 0.00 1.40
2294 2358 8.761575 ATTGCTGTTTCTGTTTGGTATTTATG 57.238 30.769 0.00 0.00 0.00 1.90
2295 2359 6.686630 TGCTGTTTCTGTTTGGTATTTATGG 58.313 36.000 0.00 0.00 0.00 2.74
2296 2360 6.099341 GCTGTTTCTGTTTGGTATTTATGGG 58.901 40.000 0.00 0.00 0.00 4.00
2468 2535 5.684704 TGACAGGGATATTCCAATCAGTTC 58.315 41.667 1.92 0.00 38.64 3.01
2805 2872 1.593196 GCAGCTTACAGGTGTGTTCA 58.407 50.000 4.95 0.00 44.96 3.18
3065 3132 8.105829 GGTGATCCATCTTACCATCTATTCATT 58.894 37.037 0.00 0.00 33.42 2.57
3148 3215 2.021457 GCAAGTACCAACACCAACAGT 58.979 47.619 0.00 0.00 0.00 3.55
3168 3235 4.522789 CAGTATTTACCCCAAAGTTGCAGT 59.477 41.667 0.00 0.00 0.00 4.40
3170 3237 2.738587 TTACCCCAAAGTTGCAGTGA 57.261 45.000 0.00 0.00 0.00 3.41
3173 3240 2.397597 ACCCCAAAGTTGCAGTGAAAT 58.602 42.857 0.00 0.00 0.00 2.17
3602 3846 0.165295 GGACCGCAGAAAAGTTACGC 59.835 55.000 0.00 0.00 0.00 4.42
3669 3914 5.088739 CGTCCATTGTAAATCAGCAACTTC 58.911 41.667 0.00 0.00 0.00 3.01
3696 3942 4.519540 ATTTTGGATGGAAGTTTGTCGG 57.480 40.909 0.00 0.00 0.00 4.79
3708 3954 2.478894 AGTTTGTCGGCGTTGTAATGAG 59.521 45.455 6.85 0.00 0.00 2.90
3731 3979 8.367156 TGAGCATATTAAATTAAATTCCCCTGC 58.633 33.333 0.00 0.00 0.00 4.85
3891 4139 2.967599 TCACTCAGGTGATCAATCGG 57.032 50.000 0.00 0.00 46.19 4.18
3916 4164 0.609662 ATGGTTTGATGCCACCAAGC 59.390 50.000 0.00 0.00 46.29 4.01
3927 4175 0.947244 CCACCAAGCTGACAACAGAC 59.053 55.000 0.00 0.00 46.03 3.51
3949 4197 9.367444 CAGACGTTCTTAATCTTTACAAGGTAT 57.633 33.333 0.00 0.00 0.00 2.73
4006 4288 7.741785 TCTATTGTGAAAGTCAAACCCTCTTA 58.258 34.615 0.00 0.00 0.00 2.10
4007 4289 8.215050 TCTATTGTGAAAGTCAAACCCTCTTAA 58.785 33.333 0.00 0.00 0.00 1.85
4008 4290 6.445357 TTGTGAAAGTCAAACCCTCTTAAC 57.555 37.500 0.00 0.00 0.00 2.01
4009 4291 5.502079 TGTGAAAGTCAAACCCTCTTAACA 58.498 37.500 0.00 0.00 0.00 2.41
4010 4292 5.946972 TGTGAAAGTCAAACCCTCTTAACAA 59.053 36.000 0.00 0.00 0.00 2.83
4011 4293 6.605594 TGTGAAAGTCAAACCCTCTTAACAAT 59.394 34.615 0.00 0.00 0.00 2.71
4012 4294 7.123547 TGTGAAAGTCAAACCCTCTTAACAATT 59.876 33.333 0.00 0.00 0.00 2.32
4013 4295 8.626526 GTGAAAGTCAAACCCTCTTAACAATTA 58.373 33.333 0.00 0.00 0.00 1.40
4014 4296 9.362151 TGAAAGTCAAACCCTCTTAACAATTAT 57.638 29.630 0.00 0.00 0.00 1.28
4017 4299 9.981114 AAGTCAAACCCTCTTAACAATTATTTG 57.019 29.630 0.00 0.00 38.86 2.32
4018 4300 9.362151 AGTCAAACCCTCTTAACAATTATTTGA 57.638 29.630 4.42 0.00 36.64 2.69
4019 4301 9.974980 GTCAAACCCTCTTAACAATTATTTGAA 57.025 29.630 4.42 0.00 35.85 2.69
4032 4314 9.500785 AACAATTATTTGAATACACCAAAAGGG 57.499 29.630 4.42 0.00 37.11 3.95
4033 4315 8.655901 ACAATTATTTGAATACACCAAAAGGGT 58.344 29.630 4.42 0.00 42.87 4.34
4045 4327 3.977427 CCAAAAGGGTAACTCTTGTTGC 58.023 45.455 0.00 0.00 37.59 4.17
4046 4328 3.383185 CCAAAAGGGTAACTCTTGTTGCA 59.617 43.478 0.00 0.00 39.93 4.08
4047 4329 4.039124 CCAAAAGGGTAACTCTTGTTGCAT 59.961 41.667 0.00 0.00 39.93 3.96
4048 4330 4.853924 AAAGGGTAACTCTTGTTGCATG 57.146 40.909 0.00 0.00 39.93 4.06
4049 4331 3.508845 AGGGTAACTCTTGTTGCATGT 57.491 42.857 0.00 0.00 39.93 3.21
4050 4332 3.832527 AGGGTAACTCTTGTTGCATGTT 58.167 40.909 0.00 0.00 39.93 2.71
4051 4333 3.569701 AGGGTAACTCTTGTTGCATGTTG 59.430 43.478 0.00 0.00 39.93 3.33
4052 4334 3.308530 GGTAACTCTTGTTGCATGTTGC 58.691 45.455 0.00 0.00 45.29 4.17
4068 4350 7.194607 GCATGTTGCATTGTATGATACTACT 57.805 36.000 4.03 0.00 44.26 2.57
4069 4351 7.642669 GCATGTTGCATTGTATGATACTACTT 58.357 34.615 4.03 0.00 44.26 2.24
4070 4352 8.773645 GCATGTTGCATTGTATGATACTACTTA 58.226 33.333 4.03 0.00 44.26 2.24
4100 4382 9.846248 ATAGAAGAATTACAACTGCATTCAAAC 57.154 29.630 0.00 0.00 30.51 2.93
4101 4383 7.715657 AGAAGAATTACAACTGCATTCAAACA 58.284 30.769 0.00 0.00 30.51 2.83
4102 4384 8.362639 AGAAGAATTACAACTGCATTCAAACAT 58.637 29.630 0.00 0.00 30.51 2.71
4103 4385 7.878477 AGAATTACAACTGCATTCAAACATG 57.122 32.000 0.00 0.00 30.51 3.21
4145 4427 5.632959 TGTGCGCACATTTAACTATTAACC 58.367 37.500 37.86 7.46 36.21 2.85
4156 4441 8.842280 CATTTAACTATTAACCGGCCTAATGAA 58.158 33.333 16.17 5.84 0.00 2.57
4238 4523 2.292292 CCGTCTTTCATTTTCCACCGTT 59.708 45.455 0.00 0.00 0.00 4.44
4259 4544 6.348458 CCGTTCTATCATCAAAAAGAGCAACA 60.348 38.462 0.00 0.00 0.00 3.33
4337 4622 3.384668 TGCTCTTGTTTCTCTGAAGTCG 58.615 45.455 0.00 0.00 0.00 4.18
4351 4636 2.224426 TGAAGTCGGCACAAACTATGGT 60.224 45.455 0.00 0.00 0.00 3.55
4419 4707 2.316108 TCTTGTGCAGTCAGAGTGGTA 58.684 47.619 7.39 0.00 0.00 3.25
4433 4721 9.386122 AGTCAGAGTGGTATATATTTCTTCCAT 57.614 33.333 0.00 0.00 0.00 3.41
4521 4812 4.655762 TGTGCAGAGGCTAGTAACTATG 57.344 45.455 0.00 0.00 41.91 2.23
4605 4896 5.293324 TCCGTTCATCTCAAAATTGGTATCG 59.707 40.000 0.00 0.00 0.00 2.92
4650 4941 3.384789 TGTAGCATACACCTGTCCATCTC 59.615 47.826 0.00 0.00 46.14 2.75
4873 5165 1.368579 GCCCATGCTTGCAGTGTTT 59.631 52.632 0.87 0.00 33.53 2.83
5017 5451 4.278419 ACTCAATTGCGTTTAGAAGCCTTT 59.722 37.500 0.00 0.00 0.00 3.11
5027 5461 5.107875 CGTTTAGAAGCCTTTTCAATTGTGC 60.108 40.000 5.13 2.41 0.00 4.57
5044 5478 7.224362 TCAATTGTGCGACATTTTGAGAATTTT 59.776 29.630 5.13 0.00 31.38 1.82
5117 5593 7.364585 GGTTTCCATTATTTGTCCCAATGATGA 60.365 37.037 0.00 0.00 0.00 2.92
5130 5606 1.125633 ATGATGATTGCAAAGGGGGC 58.874 50.000 1.71 0.00 0.00 5.80
5323 5806 1.298563 CACGTGGCTTGTGTTGCAG 60.299 57.895 7.95 0.00 32.68 4.41
5371 5854 2.676632 ACACGTGTGACCTTTACACA 57.323 45.000 22.71 0.00 46.65 3.72
5385 5868 4.225267 CCTTTACACAAGTACTCCCTCCAT 59.775 45.833 0.00 0.00 0.00 3.41
5386 5869 5.280521 CCTTTACACAAGTACTCCCTCCATT 60.281 44.000 0.00 0.00 0.00 3.16
5392 5972 6.499350 ACACAAGTACTCCCTCCATTAACTAA 59.501 38.462 0.00 0.00 0.00 2.24
5505 6085 8.829612 ACTGCCTTTGAACAAAAATAAAATGAG 58.170 29.630 1.76 0.00 0.00 2.90
5536 6116 2.540383 TCTCATACAGCTCCTTGTGGT 58.460 47.619 0.00 0.00 32.56 4.16
5551 6131 1.247567 GTGGTGTGCTATTTGCTGGT 58.752 50.000 0.00 0.00 43.37 4.00
5571 6231 1.846007 AGTCCTTCTCTGAGACGCAT 58.154 50.000 6.92 0.00 35.65 4.73
5605 6265 7.553044 GGAGTAATAAACCAGCAATACAGTCTT 59.447 37.037 0.00 0.00 0.00 3.01
5630 6290 7.435068 TGTTTTATAGGAAGCACTGAAACTC 57.565 36.000 0.00 0.00 0.00 3.01
5722 6382 1.000274 GGCCGAATTCACAAGCAAAGT 60.000 47.619 6.22 0.00 0.00 2.66
5817 6489 1.297664 GCATGCCTAGCAGACAAGAG 58.702 55.000 6.36 0.00 43.65 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
179 180 4.899239 CAGGCGCGGGCTTCTAGG 62.899 72.222 24.48 0.44 35.88 3.02
192 193 4.785453 CCTCTTGGTCCGGCAGGC 62.785 72.222 0.00 0.00 37.47 4.85
193 194 4.101448 CCCTCTTGGTCCGGCAGG 62.101 72.222 0.00 0.00 39.46 4.85
194 195 4.101448 CCCCTCTTGGTCCGGCAG 62.101 72.222 0.00 0.00 0.00 4.85
197 198 2.609610 TTCCCCCTCTTGGTCCGG 60.610 66.667 0.00 0.00 0.00 5.14
198 199 2.670148 CCTTCCCCCTCTTGGTCCG 61.670 68.421 0.00 0.00 0.00 4.79
199 200 1.229853 TCCTTCCCCCTCTTGGTCC 60.230 63.158 0.00 0.00 0.00 4.46
200 201 0.252742 TCTCCTTCCCCCTCTTGGTC 60.253 60.000 0.00 0.00 0.00 4.02
201 202 0.252927 CTCTCCTTCCCCCTCTTGGT 60.253 60.000 0.00 0.00 0.00 3.67
202 203 0.985490 CCTCTCCTTCCCCCTCTTGG 60.985 65.000 0.00 0.00 0.00 3.61
203 204 0.985490 CCCTCTCCTTCCCCCTCTTG 60.985 65.000 0.00 0.00 0.00 3.02
204 205 1.398234 CCCTCTCCTTCCCCCTCTT 59.602 63.158 0.00 0.00 0.00 2.85
205 206 3.124088 CCCTCTCCTTCCCCCTCT 58.876 66.667 0.00 0.00 0.00 3.69
206 207 2.770475 GCCCTCTCCTTCCCCCTC 60.770 72.222 0.00 0.00 0.00 4.30
207 208 4.439901 GGCCCTCTCCTTCCCCCT 62.440 72.222 0.00 0.00 0.00 4.79
236 237 4.603535 AAAAGCCCGGCCAGTGCT 62.604 61.111 5.55 3.82 37.74 4.40
237 238 4.362476 CAAAAGCCCGGCCAGTGC 62.362 66.667 5.55 0.92 0.00 4.40
238 239 4.362476 GCAAAAGCCCGGCCAGTG 62.362 66.667 5.55 2.48 0.00 3.66
239 240 4.603535 AGCAAAAGCCCGGCCAGT 62.604 61.111 5.55 0.00 0.00 4.00
240 241 3.752339 GAGCAAAAGCCCGGCCAG 61.752 66.667 5.55 0.00 0.00 4.85
248 249 1.132640 CGTACTGGCGAGCAAAAGC 59.867 57.895 0.00 0.00 0.00 3.51
249 250 0.438830 GACGTACTGGCGAGCAAAAG 59.561 55.000 0.00 0.00 35.59 2.27
250 251 1.279527 CGACGTACTGGCGAGCAAAA 61.280 55.000 7.08 0.00 35.59 2.44
251 252 1.731613 CGACGTACTGGCGAGCAAA 60.732 57.895 7.08 0.00 35.59 3.68
252 253 2.126618 CGACGTACTGGCGAGCAA 60.127 61.111 7.08 0.00 35.59 3.91
253 254 3.035576 CTCGACGTACTGGCGAGCA 62.036 63.158 23.19 2.45 43.88 4.26
254 255 2.277373 CTCGACGTACTGGCGAGC 60.277 66.667 23.19 0.00 43.88 5.03
256 257 2.359107 ACCTCGACGTACTGGCGA 60.359 61.111 13.54 13.54 35.59 5.54
257 258 2.202440 CACCTCGACGTACTGGCG 60.202 66.667 6.62 6.62 37.94 5.69
258 259 2.181021 CCACCTCGACGTACTGGC 59.819 66.667 0.00 0.00 0.00 4.85
259 260 2.181021 GCCACCTCGACGTACTGG 59.819 66.667 0.00 0.00 0.00 4.00
260 261 2.202440 CGCCACCTCGACGTACTG 60.202 66.667 0.00 0.00 0.00 2.74
261 262 3.437795 CCGCCACCTCGACGTACT 61.438 66.667 0.00 0.00 0.00 2.73
279 280 4.148825 CAAGCCTCCCTCCCGTCG 62.149 72.222 0.00 0.00 0.00 5.12
280 281 2.683933 TCAAGCCTCCCTCCCGTC 60.684 66.667 0.00 0.00 0.00 4.79
281 282 2.685380 CTCAAGCCTCCCTCCCGT 60.685 66.667 0.00 0.00 0.00 5.28
282 283 3.474570 CCTCAAGCCTCCCTCCCG 61.475 72.222 0.00 0.00 0.00 5.14
283 284 1.616628 TTCCTCAAGCCTCCCTCCC 60.617 63.158 0.00 0.00 0.00 4.30
284 285 1.631071 CCTTCCTCAAGCCTCCCTCC 61.631 65.000 0.00 0.00 0.00 4.30
285 286 1.631071 CCCTTCCTCAAGCCTCCCTC 61.631 65.000 0.00 0.00 0.00 4.30
286 287 1.617839 CCCTTCCTCAAGCCTCCCT 60.618 63.158 0.00 0.00 0.00 4.20
287 288 1.616628 TCCCTTCCTCAAGCCTCCC 60.617 63.158 0.00 0.00 0.00 4.30
288 289 1.631071 CCTCCCTTCCTCAAGCCTCC 61.631 65.000 0.00 0.00 0.00 4.30
289 290 1.631071 CCCTCCCTTCCTCAAGCCTC 61.631 65.000 0.00 0.00 0.00 4.70
290 291 1.617839 CCCTCCCTTCCTCAAGCCT 60.618 63.158 0.00 0.00 0.00 4.58
291 292 2.684499 CCCCTCCCTTCCTCAAGCC 61.684 68.421 0.00 0.00 0.00 4.35
292 293 2.684499 CCCCCTCCCTTCCTCAAGC 61.684 68.421 0.00 0.00 0.00 4.01
293 294 3.746957 CCCCCTCCCTTCCTCAAG 58.253 66.667 0.00 0.00 0.00 3.02
308 309 3.622060 TAGCAACGCCTTCAGCCCC 62.622 63.158 0.00 0.00 38.78 5.80
309 310 2.046314 TAGCAACGCCTTCAGCCC 60.046 61.111 0.00 0.00 38.78 5.19
310 311 2.109126 CCTAGCAACGCCTTCAGCC 61.109 63.158 0.00 0.00 38.78 4.85
311 312 2.109126 CCCTAGCAACGCCTTCAGC 61.109 63.158 0.00 0.00 38.52 4.26
312 313 0.321653 AACCCTAGCAACGCCTTCAG 60.322 55.000 0.00 0.00 0.00 3.02
313 314 0.109723 AAACCCTAGCAACGCCTTCA 59.890 50.000 0.00 0.00 0.00 3.02
314 315 1.199327 GAAAACCCTAGCAACGCCTTC 59.801 52.381 0.00 0.00 0.00 3.46
315 316 1.244816 GAAAACCCTAGCAACGCCTT 58.755 50.000 0.00 0.00 0.00 4.35
316 317 0.608308 GGAAAACCCTAGCAACGCCT 60.608 55.000 0.00 0.00 0.00 5.52
317 318 1.592400 GGGAAAACCCTAGCAACGCC 61.592 60.000 0.00 0.00 34.51 5.68
318 319 1.880894 GGGAAAACCCTAGCAACGC 59.119 57.895 0.00 0.00 34.51 4.84
328 329 1.451567 GAGCGCCTAGGGGAAAACC 60.452 63.158 28.92 10.88 39.11 3.27
329 330 1.814169 CGAGCGCCTAGGGGAAAAC 60.814 63.158 28.92 11.26 33.58 2.43
330 331 2.582436 CGAGCGCCTAGGGGAAAA 59.418 61.111 28.92 0.00 33.58 2.29
331 332 4.157120 GCGAGCGCCTAGGGGAAA 62.157 66.667 28.92 0.00 34.56 3.13
348 349 4.733725 TGTCCCCCTTCCCTCCCG 62.734 72.222 0.00 0.00 0.00 5.14
349 350 3.015753 GTGTCCCCCTTCCCTCCC 61.016 72.222 0.00 0.00 0.00 4.30
350 351 1.214992 AATGTGTCCCCCTTCCCTCC 61.215 60.000 0.00 0.00 0.00 4.30
351 352 1.591768 TAATGTGTCCCCCTTCCCTC 58.408 55.000 0.00 0.00 0.00 4.30
352 353 2.068831 TTAATGTGTCCCCCTTCCCT 57.931 50.000 0.00 0.00 0.00 4.20
353 354 2.911552 TTTAATGTGTCCCCCTTCCC 57.088 50.000 0.00 0.00 0.00 3.97
354 355 5.755409 AAAATTTAATGTGTCCCCCTTCC 57.245 39.130 0.00 0.00 0.00 3.46
355 356 7.234661 TGTAAAATTTAATGTGTCCCCCTTC 57.765 36.000 0.00 0.00 0.00 3.46
356 357 7.256511 CCTTGTAAAATTTAATGTGTCCCCCTT 60.257 37.037 0.00 0.00 0.00 3.95
357 358 6.212589 CCTTGTAAAATTTAATGTGTCCCCCT 59.787 38.462 0.00 0.00 0.00 4.79
358 359 6.211785 TCCTTGTAAAATTTAATGTGTCCCCC 59.788 38.462 0.00 0.00 0.00 5.40
359 360 7.234661 TCCTTGTAAAATTTAATGTGTCCCC 57.765 36.000 0.00 0.00 0.00 4.81
360 361 7.817478 CCTTCCTTGTAAAATTTAATGTGTCCC 59.183 37.037 0.00 0.00 0.00 4.46
361 362 8.364894 ACCTTCCTTGTAAAATTTAATGTGTCC 58.635 33.333 0.00 0.00 0.00 4.02
362 363 9.191995 CACCTTCCTTGTAAAATTTAATGTGTC 57.808 33.333 0.00 0.00 0.00 3.67
363 364 8.919145 TCACCTTCCTTGTAAAATTTAATGTGT 58.081 29.630 0.00 0.00 0.00 3.72
364 365 9.757227 TTCACCTTCCTTGTAAAATTTAATGTG 57.243 29.630 0.00 0.00 0.00 3.21
369 370 9.191479 TGTCTTTCACCTTCCTTGTAAAATTTA 57.809 29.630 0.00 0.00 0.00 1.40
370 371 8.073467 TGTCTTTCACCTTCCTTGTAAAATTT 57.927 30.769 0.00 0.00 0.00 1.82
371 372 7.654022 TGTCTTTCACCTTCCTTGTAAAATT 57.346 32.000 0.00 0.00 0.00 1.82
372 373 7.654022 TTGTCTTTCACCTTCCTTGTAAAAT 57.346 32.000 0.00 0.00 0.00 1.82
373 374 7.654022 ATTGTCTTTCACCTTCCTTGTAAAA 57.346 32.000 0.00 0.00 0.00 1.52
374 375 8.792633 CATATTGTCTTTCACCTTCCTTGTAAA 58.207 33.333 0.00 0.00 0.00 2.01
375 376 7.942341 ACATATTGTCTTTCACCTTCCTTGTAA 59.058 33.333 0.00 0.00 0.00 2.41
376 377 7.458397 ACATATTGTCTTTCACCTTCCTTGTA 58.542 34.615 0.00 0.00 0.00 2.41
377 378 6.306987 ACATATTGTCTTTCACCTTCCTTGT 58.693 36.000 0.00 0.00 0.00 3.16
378 379 6.824305 ACATATTGTCTTTCACCTTCCTTG 57.176 37.500 0.00 0.00 0.00 3.61
379 380 6.777580 ACAACATATTGTCTTTCACCTTCCTT 59.222 34.615 0.00 0.00 46.46 3.36
380 381 6.306987 ACAACATATTGTCTTTCACCTTCCT 58.693 36.000 0.00 0.00 46.46 3.36
381 382 6.575162 ACAACATATTGTCTTTCACCTTCC 57.425 37.500 0.00 0.00 46.46 3.46
388 389 9.346725 GAGGATCAAAACAACATATTGTCTTTC 57.653 33.333 0.00 0.00 41.26 2.62
389 390 8.023128 CGAGGATCAAAACAACATATTGTCTTT 58.977 33.333 0.00 0.00 41.26 2.52
390 391 7.362056 CCGAGGATCAAAACAACATATTGTCTT 60.362 37.037 0.00 0.00 41.26 3.01
391 392 6.094048 CCGAGGATCAAAACAACATATTGTCT 59.906 38.462 0.00 0.00 41.26 3.41
392 393 6.128007 ACCGAGGATCAAAACAACATATTGTC 60.128 38.462 0.00 0.00 41.26 3.18
393 394 5.710099 ACCGAGGATCAAAACAACATATTGT 59.290 36.000 0.00 0.00 43.02 2.71
394 395 6.194796 ACCGAGGATCAAAACAACATATTG 57.805 37.500 0.00 0.00 37.11 1.90
395 396 6.834168 AACCGAGGATCAAAACAACATATT 57.166 33.333 0.00 0.00 33.17 1.28
396 397 6.834168 AAACCGAGGATCAAAACAACATAT 57.166 33.333 0.00 0.00 33.17 1.78
397 398 7.162761 TCTAAACCGAGGATCAAAACAACATA 58.837 34.615 0.00 0.00 33.17 2.29
398 399 6.001460 TCTAAACCGAGGATCAAAACAACAT 58.999 36.000 0.00 0.00 33.17 2.71
399 400 5.369833 TCTAAACCGAGGATCAAAACAACA 58.630 37.500 0.00 0.00 33.17 3.33
400 401 5.934935 TCTAAACCGAGGATCAAAACAAC 57.065 39.130 0.00 0.00 33.17 3.32
401 402 6.017440 CACTTCTAAACCGAGGATCAAAACAA 60.017 38.462 0.00 0.00 33.17 2.83
402 403 5.468746 CACTTCTAAACCGAGGATCAAAACA 59.531 40.000 0.00 0.00 33.17 2.83
403 404 5.617087 GCACTTCTAAACCGAGGATCAAAAC 60.617 44.000 0.00 0.00 33.17 2.43
404 405 4.454504 GCACTTCTAAACCGAGGATCAAAA 59.545 41.667 0.00 0.00 33.17 2.44
405 406 4.000988 GCACTTCTAAACCGAGGATCAAA 58.999 43.478 0.00 0.00 33.17 2.69
406 407 3.007506 TGCACTTCTAAACCGAGGATCAA 59.992 43.478 0.00 0.00 33.17 2.57
407 408 2.565391 TGCACTTCTAAACCGAGGATCA 59.435 45.455 0.00 0.00 33.17 2.92
408 409 3.247006 TGCACTTCTAAACCGAGGATC 57.753 47.619 0.00 0.00 0.00 3.36
409 410 3.695830 TTGCACTTCTAAACCGAGGAT 57.304 42.857 0.00 0.00 0.00 3.24
410 411 3.478857 TTTGCACTTCTAAACCGAGGA 57.521 42.857 0.00 0.00 0.00 3.71
411 412 4.036380 ACTTTTTGCACTTCTAAACCGAGG 59.964 41.667 0.00 0.00 0.00 4.63
412 413 4.970003 CACTTTTTGCACTTCTAAACCGAG 59.030 41.667 0.00 0.00 0.00 4.63
413 414 4.396790 ACACTTTTTGCACTTCTAAACCGA 59.603 37.500 0.00 0.00 0.00 4.69
414 415 4.668289 ACACTTTTTGCACTTCTAAACCG 58.332 39.130 0.00 0.00 0.00 4.44
415 416 5.891451 AGACACTTTTTGCACTTCTAAACC 58.109 37.500 0.00 0.00 0.00 3.27
416 417 8.342634 TCATAGACACTTTTTGCACTTCTAAAC 58.657 33.333 0.00 0.00 0.00 2.01
417 418 8.445275 TCATAGACACTTTTTGCACTTCTAAA 57.555 30.769 0.00 0.00 0.00 1.85
418 419 8.621532 ATCATAGACACTTTTTGCACTTCTAA 57.378 30.769 0.00 0.00 0.00 2.10
419 420 8.621532 AATCATAGACACTTTTTGCACTTCTA 57.378 30.769 0.00 0.00 0.00 2.10
420 421 7.516198 AATCATAGACACTTTTTGCACTTCT 57.484 32.000 0.00 0.00 0.00 2.85
421 422 8.579682 AAAATCATAGACACTTTTTGCACTTC 57.420 30.769 0.00 0.00 0.00 3.01
422 423 8.947055 AAAAATCATAGACACTTTTTGCACTT 57.053 26.923 0.00 0.00 31.54 3.16
423 424 8.196771 TGAAAAATCATAGACACTTTTTGCACT 58.803 29.630 0.00 0.00 32.56 4.40
424 425 8.351495 TGAAAAATCATAGACACTTTTTGCAC 57.649 30.769 0.00 0.00 32.56 4.57
425 426 7.169645 GCTGAAAAATCATAGACACTTTTTGCA 59.830 33.333 0.00 0.00 32.56 4.08
426 427 7.383300 AGCTGAAAAATCATAGACACTTTTTGC 59.617 33.333 0.00 0.00 32.56 3.68
427 428 8.697067 CAGCTGAAAAATCATAGACACTTTTTG 58.303 33.333 8.42 0.00 32.56 2.44
428 429 8.416329 ACAGCTGAAAAATCATAGACACTTTTT 58.584 29.630 23.35 0.00 34.46 1.94
429 430 7.945134 ACAGCTGAAAAATCATAGACACTTTT 58.055 30.769 23.35 0.00 0.00 2.27
430 431 7.516198 ACAGCTGAAAAATCATAGACACTTT 57.484 32.000 23.35 0.00 0.00 2.66
431 432 7.516198 AACAGCTGAAAAATCATAGACACTT 57.484 32.000 23.35 0.00 0.00 3.16
432 433 8.507249 GTTAACAGCTGAAAAATCATAGACACT 58.493 33.333 23.35 0.00 0.00 3.55
433 434 8.507249 AGTTAACAGCTGAAAAATCATAGACAC 58.493 33.333 23.35 0.00 0.00 3.67
434 435 8.621532 AGTTAACAGCTGAAAAATCATAGACA 57.378 30.769 23.35 0.00 0.00 3.41
435 436 9.899226 AAAGTTAACAGCTGAAAAATCATAGAC 57.101 29.630 23.35 0.35 0.00 2.59
439 440 8.947055 ACAAAAGTTAACAGCTGAAAAATCAT 57.053 26.923 23.35 3.60 0.00 2.45
440 441 9.296400 GTACAAAAGTTAACAGCTGAAAAATCA 57.704 29.630 23.35 0.00 0.00 2.57
441 442 8.469125 CGTACAAAAGTTAACAGCTGAAAAATC 58.531 33.333 23.35 5.56 0.00 2.17
442 443 8.185505 TCGTACAAAAGTTAACAGCTGAAAAAT 58.814 29.630 23.35 10.26 0.00 1.82
443 444 7.528307 TCGTACAAAAGTTAACAGCTGAAAAA 58.472 30.769 23.35 8.38 0.00 1.94
444 445 7.074507 TCGTACAAAAGTTAACAGCTGAAAA 57.925 32.000 23.35 11.08 0.00 2.29
445 446 6.665474 TCGTACAAAAGTTAACAGCTGAAA 57.335 33.333 23.35 11.47 0.00 2.69
446 447 6.665474 TTCGTACAAAAGTTAACAGCTGAA 57.335 33.333 23.35 4.90 0.00 3.02
447 448 6.092396 TGTTTCGTACAAAAGTTAACAGCTGA 59.908 34.615 23.35 0.00 32.64 4.26
448 449 6.193959 GTGTTTCGTACAAAAGTTAACAGCTG 59.806 38.462 13.48 13.48 38.80 4.24
449 450 6.093082 AGTGTTTCGTACAAAAGTTAACAGCT 59.907 34.615 8.61 0.00 38.80 4.24
450 451 6.253013 AGTGTTTCGTACAAAAGTTAACAGC 58.747 36.000 8.61 0.00 38.80 4.40
451 452 9.925268 AATAGTGTTTCGTACAAAAGTTAACAG 57.075 29.630 8.61 0.00 38.80 3.16
456 457 9.281075 GTGAAAATAGTGTTTCGTACAAAAGTT 57.719 29.630 0.00 0.00 39.85 2.66
457 458 8.452534 TGTGAAAATAGTGTTTCGTACAAAAGT 58.547 29.630 0.00 0.00 39.85 2.66
458 459 8.829514 TGTGAAAATAGTGTTTCGTACAAAAG 57.170 30.769 0.00 0.00 39.85 2.27
459 460 9.227490 CATGTGAAAATAGTGTTTCGTACAAAA 57.773 29.630 0.00 0.00 39.85 2.44
460 461 8.399425 ACATGTGAAAATAGTGTTTCGTACAAA 58.601 29.630 0.00 0.00 39.85 2.83
461 462 7.921787 ACATGTGAAAATAGTGTTTCGTACAA 58.078 30.769 0.00 0.00 39.85 2.41
462 463 7.485418 ACATGTGAAAATAGTGTTTCGTACA 57.515 32.000 0.00 0.00 39.85 2.90
463 464 8.918658 TCTACATGTGAAAATAGTGTTTCGTAC 58.081 33.333 9.11 0.00 39.85 3.67
464 465 8.918658 GTCTACATGTGAAAATAGTGTTTCGTA 58.081 33.333 9.11 0.00 39.85 3.43
465 466 7.439955 TGTCTACATGTGAAAATAGTGTTTCGT 59.560 33.333 9.11 0.00 39.85 3.85
466 467 7.740346 GTGTCTACATGTGAAAATAGTGTTTCG 59.260 37.037 9.11 0.00 39.85 3.46
467 468 8.774586 AGTGTCTACATGTGAAAATAGTGTTTC 58.225 33.333 9.11 0.00 37.89 2.78
468 469 8.677148 AGTGTCTACATGTGAAAATAGTGTTT 57.323 30.769 9.11 0.00 0.00 2.83
469 470 8.677148 AAGTGTCTACATGTGAAAATAGTGTT 57.323 30.769 9.11 0.00 0.00 3.32
470 471 8.677148 AAAGTGTCTACATGTGAAAATAGTGT 57.323 30.769 9.11 0.00 0.00 3.55
506 507 9.216117 GTTTGCTCCTCGGTTTATATATTATGT 57.784 33.333 0.00 0.00 0.00 2.29
507 508 9.214957 TGTTTGCTCCTCGGTTTATATATTATG 57.785 33.333 0.00 0.00 0.00 1.90
508 509 9.787435 TTGTTTGCTCCTCGGTTTATATATTAT 57.213 29.630 0.00 0.00 0.00 1.28
509 510 9.268268 CTTGTTTGCTCCTCGGTTTATATATTA 57.732 33.333 0.00 0.00 0.00 0.98
510 511 7.255139 GCTTGTTTGCTCCTCGGTTTATATATT 60.255 37.037 0.00 0.00 0.00 1.28
511 512 6.204882 GCTTGTTTGCTCCTCGGTTTATATAT 59.795 38.462 0.00 0.00 0.00 0.86
512 513 5.526111 GCTTGTTTGCTCCTCGGTTTATATA 59.474 40.000 0.00 0.00 0.00 0.86
513 514 4.335594 GCTTGTTTGCTCCTCGGTTTATAT 59.664 41.667 0.00 0.00 0.00 0.86
514 515 3.687698 GCTTGTTTGCTCCTCGGTTTATA 59.312 43.478 0.00 0.00 0.00 0.98
515 516 2.488153 GCTTGTTTGCTCCTCGGTTTAT 59.512 45.455 0.00 0.00 0.00 1.40
516 517 1.877443 GCTTGTTTGCTCCTCGGTTTA 59.123 47.619 0.00 0.00 0.00 2.01
517 518 0.668535 GCTTGTTTGCTCCTCGGTTT 59.331 50.000 0.00 0.00 0.00 3.27
518 519 1.172812 GGCTTGTTTGCTCCTCGGTT 61.173 55.000 0.00 0.00 0.00 4.44
519 520 1.600916 GGCTTGTTTGCTCCTCGGT 60.601 57.895 0.00 0.00 0.00 4.69
520 521 1.172180 TTGGCTTGTTTGCTCCTCGG 61.172 55.000 0.00 0.00 0.00 4.63
521 522 0.667993 TTTGGCTTGTTTGCTCCTCG 59.332 50.000 0.00 0.00 0.00 4.63
522 523 1.408702 TGTTTGGCTTGTTTGCTCCTC 59.591 47.619 0.00 0.00 0.00 3.71
523 524 1.484038 TGTTTGGCTTGTTTGCTCCT 58.516 45.000 0.00 0.00 0.00 3.69
524 525 2.204237 CTTGTTTGGCTTGTTTGCTCC 58.796 47.619 0.00 0.00 0.00 4.70
525 526 1.594397 GCTTGTTTGGCTTGTTTGCTC 59.406 47.619 0.00 0.00 0.00 4.26
526 527 1.207811 AGCTTGTTTGGCTTGTTTGCT 59.792 42.857 0.00 0.00 36.56 3.91
527 528 1.328374 CAGCTTGTTTGGCTTGTTTGC 59.672 47.619 0.00 0.00 38.03 3.68
528 529 2.620242 ACAGCTTGTTTGGCTTGTTTG 58.380 42.857 0.00 0.00 38.03 2.93
529 530 3.333029 AACAGCTTGTTTGGCTTGTTT 57.667 38.095 0.00 0.00 37.26 2.83
544 545 1.093159 CATGAGGAGGAGCAAACAGC 58.907 55.000 0.00 0.00 46.19 4.40
591 592 7.042456 CCTTGTGAGAACATAGATAAATCGGTG 60.042 40.741 0.00 0.00 0.00 4.94
604 606 3.328931 AGACATGACCCTTGTGAGAACAT 59.671 43.478 0.00 0.00 0.00 2.71
617 619 7.272037 TCTTTTCTTGGTAAAAGACATGACC 57.728 36.000 0.00 0.00 45.78 4.02
702 704 3.923864 AGCACGGTCCTGCGTTGA 61.924 61.111 7.42 0.00 42.42 3.18
810 818 1.200948 GCTCTTGTTTGTCAGGATGCC 59.799 52.381 0.00 0.00 34.76 4.40
812 820 3.144506 ACTGCTCTTGTTTGTCAGGATG 58.855 45.455 0.00 0.00 31.88 3.51
815 823 3.699067 CAAACTGCTCTTGTTTGTCAGG 58.301 45.455 10.16 0.00 45.19 3.86
827 835 2.032924 AGTAACAAACGGCAAACTGCTC 59.967 45.455 0.00 0.00 44.28 4.26
834 842 4.171005 CGATCTAGAGTAACAAACGGCAA 58.829 43.478 0.00 0.00 0.00 4.52
847 855 0.318869 CTGCTGCCTGCGATCTAGAG 60.319 60.000 0.00 0.00 46.63 2.43
848 856 1.039785 ACTGCTGCCTGCGATCTAGA 61.040 55.000 0.00 0.00 46.63 2.43
849 857 0.670706 TACTGCTGCCTGCGATCTAG 59.329 55.000 0.00 0.00 46.63 2.43
850 858 0.670706 CTACTGCTGCCTGCGATCTA 59.329 55.000 0.00 0.00 46.63 1.98
851 859 1.440893 CTACTGCTGCCTGCGATCT 59.559 57.895 0.00 0.00 46.63 2.75
852 860 2.243264 GCTACTGCTGCCTGCGATC 61.243 63.158 0.00 0.00 46.63 3.69
854 862 3.694538 TGCTACTGCTGCCTGCGA 61.695 61.111 0.00 0.00 46.63 5.10
855 863 2.563050 TAGTGCTACTGCTGCCTGCG 62.563 60.000 0.00 0.00 46.63 5.18
856 864 0.391661 TTAGTGCTACTGCTGCCTGC 60.392 55.000 0.00 0.00 40.48 4.85
857 865 1.338105 TGTTAGTGCTACTGCTGCCTG 60.338 52.381 0.00 0.00 40.48 4.85
858 866 0.976641 TGTTAGTGCTACTGCTGCCT 59.023 50.000 0.00 0.00 40.48 4.75
859 867 1.808411 TTGTTAGTGCTACTGCTGCC 58.192 50.000 0.00 0.00 40.48 4.85
860 868 4.083324 TCAATTTGTTAGTGCTACTGCTGC 60.083 41.667 0.00 0.00 40.48 5.25
861 869 5.049474 TGTCAATTTGTTAGTGCTACTGCTG 60.049 40.000 0.00 0.00 40.48 4.41
862 870 5.063204 TGTCAATTTGTTAGTGCTACTGCT 58.937 37.500 0.00 0.00 40.48 4.24
863 871 5.356882 TGTCAATTTGTTAGTGCTACTGC 57.643 39.130 0.00 0.00 40.20 4.40
864 872 6.636850 GGTTTGTCAATTTGTTAGTGCTACTG 59.363 38.462 0.00 0.00 0.00 2.74
865 873 6.238925 GGGTTTGTCAATTTGTTAGTGCTACT 60.239 38.462 0.00 0.00 0.00 2.57
866 874 5.918576 GGGTTTGTCAATTTGTTAGTGCTAC 59.081 40.000 0.00 0.00 0.00 3.58
867 875 5.594725 TGGGTTTGTCAATTTGTTAGTGCTA 59.405 36.000 0.00 0.00 0.00 3.49
868 876 4.404073 TGGGTTTGTCAATTTGTTAGTGCT 59.596 37.500 0.00 0.00 0.00 4.40
946 954 4.111577 AGAGGAAGAAGGAGAGAGAGAGA 58.888 47.826 0.00 0.00 0.00 3.10
947 955 4.510167 AGAGGAAGAAGGAGAGAGAGAG 57.490 50.000 0.00 0.00 0.00 3.20
957 965 2.115427 GGGAGAGGAAGAGGAAGAAGG 58.885 57.143 0.00 0.00 0.00 3.46
988 996 0.031616 AGGAAGCGGAGGAGGAAGAT 60.032 55.000 0.00 0.00 0.00 2.40
1285 1325 3.518998 GCCTCGAGCCAGAGCGTA 61.519 66.667 6.99 0.00 46.67 4.42
1406 1446 2.534298 CAGCTTACAGGTGATGACGAG 58.466 52.381 0.00 0.00 45.98 4.18
1428 1468 1.799258 GCATTAGGGAGGCAATGCGG 61.799 60.000 0.00 0.00 45.25 5.69
1461 1501 0.039527 GTTAGCAACTGGGCCGTTTG 60.040 55.000 11.60 11.60 0.00 2.93
1469 1509 2.094675 CCCAGGATTGTTAGCAACTGG 58.905 52.381 17.19 17.19 43.20 4.00
1473 1513 3.269381 AGATTCCCCAGGATTGTTAGCAA 59.731 43.478 0.00 0.00 39.16 3.91
1474 1514 2.852449 AGATTCCCCAGGATTGTTAGCA 59.148 45.455 0.00 0.00 0.00 3.49
1479 1519 4.103785 CAGATACAGATTCCCCAGGATTGT 59.896 45.833 0.00 0.00 0.00 2.71
1512 1552 0.247460 GATGGGGAAGCAAGCAAACC 59.753 55.000 0.00 0.00 0.00 3.27
1572 1618 5.221048 CCAAGGACAAACGAAACTTCATTCT 60.221 40.000 0.00 0.00 0.00 2.40
1733 1785 6.197981 GCGACACTTATACTTCCACTACTAC 58.802 44.000 0.00 0.00 0.00 2.73
1814 1878 2.154854 TTCAAGCTGTCGACTGAAGG 57.845 50.000 24.65 12.60 0.00 3.46
1818 1882 2.866156 TCAAGTTTCAAGCTGTCGACTG 59.134 45.455 17.92 17.57 0.00 3.51
1875 1939 1.607628 GAATCTGATGATGGCTGGTGC 59.392 52.381 0.00 0.00 32.44 5.01
1909 1973 2.691409 ATACGCCTGCACAAGTACAT 57.309 45.000 0.00 0.00 0.00 2.29
1975 2039 2.528041 AGGAACAGAAGGTTGTCGTC 57.472 50.000 0.00 0.00 40.63 4.20
1978 2042 1.609072 GCCAAGGAACAGAAGGTTGTC 59.391 52.381 0.00 0.00 40.63 3.18
2002 2066 3.271729 CTTCATGAGCAAGATGAGCAGT 58.728 45.455 0.00 0.00 31.52 4.40
2083 2147 9.330063 CATAACTTCTTCATATTTAGCCTGTGA 57.670 33.333 0.00 0.00 0.00 3.58
2105 2169 1.827789 GCGCAGGCATTCCCCATAA 60.828 57.895 0.30 0.00 39.62 1.90
2158 2222 4.904116 TCGTTCTGTAAGCAACAACAAAG 58.096 39.130 0.00 0.00 37.74 2.77
2167 2231 0.033366 TGCAGCTCGTTCTGTAAGCA 59.967 50.000 0.00 0.00 38.51 3.91
2266 2330 3.030291 ACCAAACAGAAACAGCAATCCA 58.970 40.909 0.00 0.00 0.00 3.41
2295 2359 0.466372 GAGCAGAAGGGGCCATAACC 60.466 60.000 4.39 0.00 0.00 2.85
2296 2360 0.466372 GGAGCAGAAGGGGCCATAAC 60.466 60.000 4.39 0.00 0.00 1.89
2390 2457 4.935808 TCTCGCTCCTTGAATAAAGTTTCC 59.064 41.667 0.00 0.00 33.66 3.13
2738 2805 1.546029 CATCTGACACCGTTGGAGAGA 59.454 52.381 0.00 0.00 0.00 3.10
2805 2872 5.332743 TCAAGATCAAAGCCCATAGGTTTT 58.667 37.500 0.00 0.00 46.51 2.43
2842 2909 3.620821 ACCAAAACAACAGCAAATTTCCG 59.379 39.130 0.00 0.00 0.00 4.30
2976 3043 1.446272 GTCCTTTCTGCGAGGTCGG 60.446 63.158 0.89 0.00 40.23 4.79
3085 3152 6.774673 TCTTGTGACATAATTCAACCCTACA 58.225 36.000 0.00 0.00 0.00 2.74
3148 3215 4.730966 TCACTGCAACTTTGGGGTAAATA 58.269 39.130 0.00 0.00 0.00 1.40
3602 3846 3.243704 CCTTCCTAGAATCTCCAGAAGCG 60.244 52.174 9.87 3.05 31.49 4.68
3669 3914 7.485913 CGACAAACTTCCATCCAAAATTATGAG 59.514 37.037 0.00 0.00 0.00 2.90
3708 3954 7.116233 CACGCAGGGGAATTTAATTTAATATGC 59.884 37.037 0.00 0.00 0.00 3.14
3731 3979 0.944311 CACTTCGACCTGGGAACACG 60.944 60.000 0.00 0.00 35.60 4.49
3780 4028 2.094494 TGCAGGAATCACTTCTCTCGAC 60.094 50.000 0.00 0.00 0.00 4.20
3783 4031 4.438472 GCAAATGCAGGAATCACTTCTCTC 60.438 45.833 0.00 0.00 41.59 3.20
3891 4139 4.389772 GCATCAAACCATGCTCGC 57.610 55.556 0.00 0.00 45.03 5.03
3909 4157 0.583438 CGTCTGTTGTCAGCTTGGTG 59.417 55.000 0.00 0.00 41.10 4.17
3916 4164 6.771188 AAGATTAAGAACGTCTGTTGTCAG 57.229 37.500 0.00 0.00 38.78 3.51
3949 4197 9.509956 AGGTAAATGTAAACTAATGCAAGTGTA 57.490 29.630 0.00 0.00 0.00 2.90
3986 4234 5.502079 TGTTAAGAGGGTTTGACTTTCACA 58.498 37.500 0.00 0.00 0.00 3.58
3987 4235 6.445357 TTGTTAAGAGGGTTTGACTTTCAC 57.555 37.500 0.00 0.00 0.00 3.18
4006 4288 9.500785 CCCTTTTGGTGTATTCAAATAATTGTT 57.499 29.630 0.00 0.00 36.47 2.83
4024 4306 3.383185 TGCAACAAGAGTTACCCTTTTGG 59.617 43.478 0.00 0.00 39.10 3.28
4025 4307 4.647424 TGCAACAAGAGTTACCCTTTTG 57.353 40.909 0.00 0.00 40.29 2.44
4026 4308 4.649218 ACATGCAACAAGAGTTACCCTTTT 59.351 37.500 0.00 0.00 35.85 2.27
4027 4309 4.215109 ACATGCAACAAGAGTTACCCTTT 58.785 39.130 0.00 0.00 35.85 3.11
4028 4310 3.832527 ACATGCAACAAGAGTTACCCTT 58.167 40.909 0.00 0.00 35.85 3.95
4029 4311 3.508845 ACATGCAACAAGAGTTACCCT 57.491 42.857 0.00 0.00 35.85 4.34
4030 4312 3.857010 GCAACATGCAACAAGAGTTACCC 60.857 47.826 0.00 0.00 44.26 3.69
4031 4313 3.308530 GCAACATGCAACAAGAGTTACC 58.691 45.455 0.00 0.00 44.26 2.85
4044 4326 7.194607 AGTAGTATCATACAATGCAACATGC 57.805 36.000 0.00 0.00 45.29 4.06
4074 4356 9.846248 GTTTGAATGCAGTTGTAATTCTTCTAT 57.154 29.630 0.00 0.00 0.00 1.98
4075 4357 8.845227 TGTTTGAATGCAGTTGTAATTCTTCTA 58.155 29.630 0.00 0.00 0.00 2.10
4076 4358 7.715657 TGTTTGAATGCAGTTGTAATTCTTCT 58.284 30.769 0.00 0.00 0.00 2.85
4077 4359 7.928908 TGTTTGAATGCAGTTGTAATTCTTC 57.071 32.000 0.00 0.00 0.00 2.87
4078 4360 8.301730 CATGTTTGAATGCAGTTGTAATTCTT 57.698 30.769 0.00 0.00 0.00 2.52
4079 4361 7.878477 CATGTTTGAATGCAGTTGTAATTCT 57.122 32.000 0.00 0.00 0.00 2.40
4113 4395 2.522836 ATGTGCGCACAATGGAAAAA 57.477 40.000 43.14 20.05 45.41 1.94
4123 4405 4.726704 CGGTTAATAGTTAAATGTGCGCAC 59.273 41.667 33.11 33.11 0.00 5.34
4145 4427 3.508744 ATGCAAAAGTTCATTAGGCCG 57.491 42.857 0.00 0.00 0.00 6.13
4156 4441 1.615392 GTGGAGCCTGAATGCAAAAGT 59.385 47.619 0.00 0.00 0.00 2.66
4238 4523 7.663081 AGTTCTGTTGCTCTTTTTGATGATAGA 59.337 33.333 0.00 0.00 0.00 1.98
4259 4544 5.357596 GTCTTCCACCGATCTTAGTAGTTCT 59.642 44.000 0.00 0.00 0.00 3.01
4337 4622 5.356426 AGTTTTGAAACCATAGTTTGTGCC 58.644 37.500 0.00 0.00 46.25 5.01
4389 4677 3.430042 ACTGCACAAGATGAAGTGGAT 57.570 42.857 0.00 0.00 46.57 3.41
4482 4773 3.181521 GCACAACAACAAGAAGCAAAACC 60.182 43.478 0.00 0.00 0.00 3.27
4605 4896 7.033791 ACAATCTTTGCAATGAATCATCTGAC 58.966 34.615 17.82 0.00 0.00 3.51
4650 4941 4.879197 AGAGAGCAAAATTCAAAAGGGG 57.121 40.909 0.00 0.00 0.00 4.79
4873 5165 0.178955 TGGGGTAGACGTGAACTGGA 60.179 55.000 0.00 0.00 0.00 3.86
5017 5451 5.180367 TCTCAAAATGTCGCACAATTGAA 57.820 34.783 13.59 0.00 37.47 2.69
5027 5461 9.377383 AGTTACGTAAAAATTCTCAAAATGTCG 57.623 29.630 10.11 0.00 0.00 4.35
5117 5593 3.694538 GTGCGCCCCCTTTGCAAT 61.695 61.111 4.18 0.00 40.83 3.56
5130 5606 3.582148 ATGTGGCTGACATGTGCG 58.418 55.556 1.15 0.00 44.12 5.34
5323 5806 4.511082 GCCTCATCAGAGAGTAATTTCTGC 59.489 45.833 5.88 0.00 44.98 4.26
5472 6052 1.340502 TGTTCAAAGGCAGTGGTGTGA 60.341 47.619 0.00 0.00 0.00 3.58
5505 6085 5.496133 AGCTGTATGAGAATTGTTGATGC 57.504 39.130 0.00 0.00 0.00 3.91
5551 6131 2.491675 TGCGTCTCAGAGAAGGACTA 57.508 50.000 14.42 0.00 0.00 2.59
5571 6231 4.080751 GCTGGTTTATTACTCCCTGGTGTA 60.081 45.833 0.00 0.00 0.00 2.90
5605 6265 7.500892 TGAGTTTCAGTGCTTCCTATAAAACAA 59.499 33.333 0.00 0.00 0.00 2.83
5630 6290 2.048444 ATGATGCCAGTAACCTGCTG 57.952 50.000 0.00 0.00 37.38 4.41
5768 6439 5.296151 TCACAGGCTATCCAAGGAAATAG 57.704 43.478 0.00 0.00 33.74 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.