Multiple sequence alignment - TraesCS3B01G265400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G265400 chr3B 100.000 3352 0 0 1 3352 424793773 424790422 0.000000e+00 6191
1 TraesCS3B01G265400 chr3B 100.000 537 0 0 3768 4304 424790006 424789470 0.000000e+00 992
2 TraesCS3B01G265400 chr3D 92.417 2598 143 21 774 3348 324386002 324388568 0.000000e+00 3657
3 TraesCS3B01G265400 chr3D 90.561 731 61 4 1 728 324385279 324386004 0.000000e+00 961
4 TraesCS3B01G265400 chr3D 93.194 382 19 4 3836 4214 324388693 324389070 4.860000e-154 555
5 TraesCS3B01G265400 chr3A 93.567 1601 91 7 1156 2749 437635418 437637013 0.000000e+00 2375
6 TraesCS3B01G265400 chr3A 88.632 1645 127 23 1747 3348 437863759 437865386 0.000000e+00 1947
7 TraesCS3B01G265400 chr3A 91.250 800 60 5 1 794 437618930 437619725 0.000000e+00 1081
8 TraesCS3B01G265400 chr3A 90.244 779 64 8 1 773 437856327 437857099 0.000000e+00 1007
9 TraesCS3B01G265400 chr3A 88.870 575 32 13 762 1327 437862173 437862724 0.000000e+00 678
10 TraesCS3B01G265400 chr3A 92.913 381 20 4 3836 4214 437865827 437866202 8.140000e-152 547
11 TraesCS3B01G265400 chr3A 88.413 397 32 7 782 1168 437619910 437620302 2.340000e-127 466
12 TraesCS3B01G265400 chr3A 95.935 246 10 0 2745 2990 437643435 437643680 2.410000e-107 399
13 TraesCS3B01G265400 chr3A 87.189 281 16 6 3082 3348 437643862 437644136 6.990000e-78 302
14 TraesCS3B01G265400 chr3A 95.652 161 7 0 4054 4214 437644784 437644944 4.270000e-65 259
15 TraesCS3B01G265400 chr3A 81.053 190 10 11 3836 4022 437644616 437644782 1.260000e-25 128
16 TraesCS3B01G265400 chr7D 80.837 1936 265 62 1347 3243 562122038 562123906 0.000000e+00 1423
17 TraesCS3B01G265400 chr7D 90.354 311 29 1 1013 1323 562121411 562121720 1.440000e-109 407
18 TraesCS3B01G265400 chr7A 80.124 1937 277 63 1347 3243 647296598 647298466 0.000000e+00 1345
19 TraesCS3B01G265400 chr7A 88.328 317 36 1 1007 1323 647295822 647296137 3.140000e-101 379
20 TraesCS3B01G265400 chr7B 84.609 1228 152 21 1952 3170 611720359 611721558 0.000000e+00 1186
21 TraesCS3B01G265400 chr7B 88.462 312 34 2 1012 1323 611719061 611719370 4.060000e-100 375


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G265400 chr3B 424789470 424793773 4303 True 3591.500000 6191 100.000000 1 4304 2 chr3B.!!$R1 4303
1 TraesCS3B01G265400 chr3D 324385279 324389070 3791 False 1724.333333 3657 92.057333 1 4214 3 chr3D.!!$F1 4213
2 TraesCS3B01G265400 chr3A 437635418 437637013 1595 False 2375.000000 2375 93.567000 1156 2749 1 chr3A.!!$F1 1593
3 TraesCS3B01G265400 chr3A 437862173 437866202 4029 False 1057.333333 1947 90.138333 762 4214 3 chr3A.!!$F5 3452
4 TraesCS3B01G265400 chr3A 437856327 437857099 772 False 1007.000000 1007 90.244000 1 773 1 chr3A.!!$F2 772
5 TraesCS3B01G265400 chr3A 437618930 437620302 1372 False 773.500000 1081 89.831500 1 1168 2 chr3A.!!$F3 1167
6 TraesCS3B01G265400 chr3A 437643435 437644944 1509 False 272.000000 399 89.957250 2745 4214 4 chr3A.!!$F4 1469
7 TraesCS3B01G265400 chr7D 562121411 562123906 2495 False 915.000000 1423 85.595500 1013 3243 2 chr7D.!!$F1 2230
8 TraesCS3B01G265400 chr7A 647295822 647298466 2644 False 862.000000 1345 84.226000 1007 3243 2 chr7A.!!$F1 2236
9 TraesCS3B01G265400 chr7B 611719061 611721558 2497 False 780.500000 1186 86.535500 1012 3170 2 chr7B.!!$F1 2158

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
826 1033 0.179156 TTAGGTGATCGCGTTCGTCC 60.179 55.0 17.62 17.62 36.96 4.79 F
1120 1338 0.537143 TTGCCATGGACGAGCAGTTT 60.537 50.0 18.40 0.00 37.89 2.66 F
2282 3438 0.988678 AGCATGGACTTACCCCTCCC 60.989 60.0 0.00 0.00 38.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2593 3851 0.609957 TGAGCCAATGGAAGTGCAGG 60.610 55.0 2.05 0.0 0.0 4.85 R
2803 4089 0.676466 TGACCCATGAACGTGATGCC 60.676 55.0 0.00 0.0 0.0 4.40 R
3834 5284 0.043032 TTCCCGCCCCCTCTTAACTA 59.957 55.0 0.00 0.0 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.142093 GGGTAGTCATGCTAAAGTTACCGA 60.142 45.833 0.00 0.00 31.94 4.69
105 106 5.459434 GCCTCTCTCGTGCTAAATTTACTAC 59.541 44.000 0.00 0.00 0.00 2.73
110 111 6.197276 TCTCGTGCTAAATTTACTACGCTAG 58.803 40.000 17.98 13.54 0.00 3.42
131 132 5.746990 AGTCATGATATAGTTACCAGGCC 57.253 43.478 0.00 0.00 0.00 5.19
159 160 6.257630 CCATATTAAAATTGCCAAACTTCCCG 59.742 38.462 0.00 0.00 0.00 5.14
185 186 1.678627 CAGCTACTAGGTCGCTCATGT 59.321 52.381 0.00 0.00 32.27 3.21
186 187 2.099921 CAGCTACTAGGTCGCTCATGTT 59.900 50.000 0.00 0.00 32.27 2.71
199 200 6.016443 GGTCGCTCATGTTATAGTTACTAGGT 60.016 42.308 0.00 0.00 0.00 3.08
498 505 5.221521 ACAGAGCAGTCATCTAACAAGAACA 60.222 40.000 0.00 0.00 0.00 3.18
531 538 2.542020 AATGGGAAAAGCAAAACCGG 57.458 45.000 0.00 0.00 0.00 5.28
533 540 0.461961 TGGGAAAAGCAAAACCGGTG 59.538 50.000 8.52 0.00 0.00 4.94
563 570 1.226379 GGTGCAATGCGAACGATGG 60.226 57.895 0.00 0.00 0.00 3.51
604 611 3.317406 AGACTTTGAAAAGGGGCCAAAT 58.683 40.909 4.39 0.00 40.31 2.32
630 638 7.814107 TGGTTAATTTTCGTTACTAGACATCGT 59.186 33.333 0.00 0.00 0.00 3.73
667 675 2.614259 TGGTTGTTGGGCCATGTTTAT 58.386 42.857 7.26 0.00 0.00 1.40
668 676 2.975489 TGGTTGTTGGGCCATGTTTATT 59.025 40.909 7.26 0.00 0.00 1.40
669 677 3.392616 TGGTTGTTGGGCCATGTTTATTT 59.607 39.130 7.26 0.00 0.00 1.40
747 755 4.270392 CACACCCACGTGCGATTA 57.730 55.556 10.91 0.00 44.40 1.75
757 765 3.845775 CCACGTGCGATTATTTTTCACAG 59.154 43.478 10.91 0.00 0.00 3.66
826 1033 0.179156 TTAGGTGATCGCGTTCGTCC 60.179 55.000 17.62 17.62 36.96 4.79
854 1061 2.143122 TCAAACAACTGGCAGATCGTC 58.857 47.619 23.66 0.00 0.00 4.20
977 1185 2.838225 CCTATCCACCGGAGCCGT 60.838 66.667 9.46 0.00 34.05 5.68
1010 1219 2.416432 CGGACGAGGGGAACTCTCC 61.416 68.421 0.00 0.00 44.33 3.71
1022 1237 2.143925 GAACTCTCCGGGACAAACAAG 58.856 52.381 0.00 0.00 0.00 3.16
1120 1338 0.537143 TTGCCATGGACGAGCAGTTT 60.537 50.000 18.40 0.00 37.89 2.66
1342 2076 5.479306 TCTGTGATTAAGGCTGTTGTACTC 58.521 41.667 0.00 0.00 0.00 2.59
1385 2133 6.128795 GCAGTGATAAGTAGGTTCGAATATGC 60.129 42.308 0.00 0.00 0.00 3.14
1388 2136 6.366332 GTGATAAGTAGGTTCGAATATGCTGG 59.634 42.308 0.00 0.00 0.00 4.85
1431 2179 7.064134 TGTGACTGCCTCGTTAAAAATATAGTG 59.936 37.037 0.00 0.00 0.00 2.74
1490 2242 5.710984 AGAACCGAAGTATCACTGTAACAG 58.289 41.667 0.00 0.00 37.52 3.16
1554 2306 8.442374 AGTTGTTAAATTCTGGGTTCTTACCTA 58.558 33.333 0.00 0.00 44.38 3.08
1594 2346 8.327941 TCAATCTCAAGTTCTCACTTAATTGG 57.672 34.615 12.44 0.00 41.69 3.16
1655 2411 3.135167 TGCATGTCTTGGCTCAGATATGA 59.865 43.478 20.40 0.00 42.28 2.15
1913 2972 6.749923 AGTAAAATGCAATGGTCTCTCTTC 57.250 37.500 0.00 0.00 0.00 2.87
2039 3191 3.953612 GGAGTGGCACATTTATGATTGGA 59.046 43.478 21.41 0.00 44.52 3.53
2072 3224 3.382278 TCCTGCATCTCTCTTGGATCTT 58.618 45.455 0.00 0.00 0.00 2.40
2149 3305 4.640201 TGCTGATATTGGTCAGGTAAAAGC 59.360 41.667 6.10 0.00 44.55 3.51
2188 3344 4.693566 TGTCTTGTTAATTTGTAGGCCTCG 59.306 41.667 9.68 0.00 0.00 4.63
2232 3388 7.918076 ACAGATGGTAATGGTAAGAGAAGAAA 58.082 34.615 0.00 0.00 0.00 2.52
2276 3432 4.035675 GCTGAATACAAGCATGGACTTACC 59.964 45.833 0.00 0.00 39.54 2.85
2282 3438 0.988678 AGCATGGACTTACCCCTCCC 60.989 60.000 0.00 0.00 38.00 4.30
2321 3477 3.169198 CGTTTTCGCAGAGAGCCC 58.831 61.111 0.00 0.00 41.38 5.19
2420 3577 1.753073 AGGCTAAATCTTGCATGCACC 59.247 47.619 22.58 15.65 0.00 5.01
2517 3718 8.954350 CAGTATCCTTTTGATCTGTGAGATTTT 58.046 33.333 0.00 0.00 34.53 1.82
2530 3731 3.365820 GTGAGATTTTGCCAAATGCTTCG 59.634 43.478 0.00 0.00 42.00 3.79
2531 3732 2.925563 GAGATTTTGCCAAATGCTTCGG 59.074 45.455 0.00 0.00 42.00 4.30
2594 3852 9.880157 TGTTCTGTATTATTTAGTTGGTAGTCC 57.120 33.333 0.00 0.00 0.00 3.85
2621 3882 2.358957 TCCATTGGCTCATCAACTTCG 58.641 47.619 0.00 0.00 0.00 3.79
2630 3891 5.294306 TGGCTCATCAACTTCGTAATGAATC 59.706 40.000 0.00 0.00 35.63 2.52
2731 3992 9.920133 TCTCTTAAGCATGTCATTATAGTGATC 57.080 33.333 0.83 0.00 0.00 2.92
2739 4000 9.034544 GCATGTCATTATAGTGATCGCATATAA 57.965 33.333 9.33 12.93 0.00 0.98
2793 4079 2.031191 TGCCTCGTCGAAAGTTGTTTTC 59.969 45.455 0.00 0.00 41.46 2.29
2798 4084 5.163982 CCTCGTCGAAAGTTGTTTTCTATCC 60.164 44.000 0.00 0.00 42.47 2.59
2803 4089 4.433805 CGAAAGTTGTTTTCTATCCCGACG 60.434 45.833 0.00 0.00 42.47 5.12
2874 4161 0.587768 TGCAAATCTGTCTGCGTGTG 59.412 50.000 0.00 0.00 41.63 3.82
2972 4259 2.670934 AGCTCTTGCACCCAAGCG 60.671 61.111 0.00 0.00 46.38 4.68
3056 4343 3.223661 CAGACAGCTGAAGTGGACC 57.776 57.895 23.35 0.00 45.17 4.46
3057 4344 0.394192 CAGACAGCTGAAGTGGACCA 59.606 55.000 23.35 0.00 45.17 4.02
3058 4345 0.683973 AGACAGCTGAAGTGGACCAG 59.316 55.000 23.35 0.00 0.00 4.00
3059 4346 0.681733 GACAGCTGAAGTGGACCAGA 59.318 55.000 23.35 0.00 32.37 3.86
3060 4347 1.070758 GACAGCTGAAGTGGACCAGAA 59.929 52.381 23.35 0.00 32.37 3.02
3061 4348 1.701847 ACAGCTGAAGTGGACCAGAAT 59.298 47.619 23.35 0.00 32.37 2.40
3062 4349 2.906389 ACAGCTGAAGTGGACCAGAATA 59.094 45.455 23.35 0.00 32.37 1.75
3135 4547 7.933577 TGTATTAGGCGATTCAGATCAAAGAAT 59.066 33.333 7.51 7.51 37.19 2.40
3170 4582 2.939022 AAGCGCGCTTGTTGTCTC 59.061 55.556 42.62 5.09 34.60 3.36
3184 4599 5.899120 TGTTGTCTCCTACTGTACTGATC 57.101 43.478 6.77 0.00 0.00 2.92
3212 4627 9.920133 TCATCTCATCAGTAATAATAAGAGTGC 57.080 33.333 0.00 0.00 0.00 4.40
3213 4628 8.858186 CATCTCATCAGTAATAATAAGAGTGCG 58.142 37.037 0.00 0.00 0.00 5.34
3214 4629 8.166422 TCTCATCAGTAATAATAAGAGTGCGA 57.834 34.615 0.00 0.00 0.00 5.10
3276 4698 3.751698 GGTGCTCGAGTCCTTATTTGTTT 59.248 43.478 15.13 0.00 0.00 2.83
3348 4777 5.618056 TCAGTTGTGAATGCTGAAGATTC 57.382 39.130 0.00 0.00 36.46 2.52
3350 4779 3.438087 AGTTGTGAATGCTGAAGATTCCG 59.562 43.478 0.00 0.00 0.00 4.30
3351 4780 1.739466 TGTGAATGCTGAAGATTCCGC 59.261 47.619 2.41 2.41 37.83 5.54
3798 5248 5.379732 TTTTTCTAACCGGGCATAAACTG 57.620 39.130 6.32 0.00 0.00 3.16
3814 5264 7.079182 CATAAACTGCTTAACGTTAATGGGA 57.921 36.000 20.39 10.64 0.00 4.37
3815 5265 7.531716 CATAAACTGCTTAACGTTAATGGGAA 58.468 34.615 20.39 3.96 0.00 3.97
3816 5266 6.394025 AAACTGCTTAACGTTAATGGGAAA 57.606 33.333 20.39 0.00 0.00 3.13
3817 5267 6.584185 AACTGCTTAACGTTAATGGGAAAT 57.416 33.333 20.39 2.81 0.00 2.17
3818 5268 5.949735 ACTGCTTAACGTTAATGGGAAATG 58.050 37.500 20.39 8.04 0.00 2.32
3819 5269 4.739195 TGCTTAACGTTAATGGGAAATGC 58.261 39.130 20.39 16.86 0.00 3.56
3820 5270 4.218635 TGCTTAACGTTAATGGGAAATGCA 59.781 37.500 20.39 18.96 0.00 3.96
3821 5271 5.164954 GCTTAACGTTAATGGGAAATGCAA 58.835 37.500 20.39 0.00 0.00 4.08
3822 5272 5.288472 GCTTAACGTTAATGGGAAATGCAAG 59.712 40.000 20.39 7.60 0.00 4.01
3823 5273 3.230743 ACGTTAATGGGAAATGCAAGC 57.769 42.857 0.00 0.00 0.00 4.01
3824 5274 2.560542 ACGTTAATGGGAAATGCAAGCA 59.439 40.909 0.00 0.00 0.00 3.91
3825 5275 3.195396 ACGTTAATGGGAAATGCAAGCAT 59.805 39.130 0.86 0.86 38.46 3.79
3826 5276 3.798337 CGTTAATGGGAAATGCAAGCATC 59.202 43.478 8.14 0.00 35.31 3.91
3827 5277 2.994186 AATGGGAAATGCAAGCATCC 57.006 45.000 8.14 7.06 35.31 3.51
3828 5278 1.868713 ATGGGAAATGCAAGCATCCA 58.131 45.000 14.04 14.04 35.31 3.41
3829 5279 1.642112 TGGGAAATGCAAGCATCCAA 58.358 45.000 14.63 2.85 35.31 3.53
3830 5280 1.976404 TGGGAAATGCAAGCATCCAAA 59.024 42.857 14.63 2.28 35.31 3.28
3831 5281 2.289569 TGGGAAATGCAAGCATCCAAAC 60.290 45.455 14.63 4.16 35.31 2.93
3832 5282 2.349590 GGAAATGCAAGCATCCAAACC 58.650 47.619 8.14 4.51 35.31 3.27
3833 5283 2.289569 GGAAATGCAAGCATCCAAACCA 60.290 45.455 8.14 0.00 35.31 3.67
3834 5284 3.602483 GAAATGCAAGCATCCAAACCAT 58.398 40.909 8.14 0.00 35.31 3.55
3835 5285 4.382901 GGAAATGCAAGCATCCAAACCATA 60.383 41.667 8.14 0.00 35.31 2.74
3836 5286 4.395959 AATGCAAGCATCCAAACCATAG 57.604 40.909 8.14 0.00 35.31 2.23
3837 5287 2.806434 TGCAAGCATCCAAACCATAGT 58.194 42.857 0.00 0.00 0.00 2.12
3838 5288 3.164268 TGCAAGCATCCAAACCATAGTT 58.836 40.909 0.00 0.00 38.03 2.24
3839 5289 4.339748 TGCAAGCATCCAAACCATAGTTA 58.660 39.130 0.00 0.00 34.19 2.24
3840 5290 4.769488 TGCAAGCATCCAAACCATAGTTAA 59.231 37.500 0.00 0.00 34.19 2.01
3841 5291 5.105797 TGCAAGCATCCAAACCATAGTTAAG 60.106 40.000 0.00 0.00 34.19 1.85
3885 5335 0.742990 TTCAACGCATAGCCGGGAAG 60.743 55.000 2.18 0.00 0.00 3.46
3887 5337 1.153429 AACGCATAGCCGGGAAGTC 60.153 57.895 2.18 0.00 0.00 3.01
3888 5338 2.280186 CGCATAGCCGGGAAGTCC 60.280 66.667 2.18 0.00 0.00 3.85
3889 5339 2.908015 GCATAGCCGGGAAGTCCA 59.092 61.111 2.18 0.00 37.91 4.02
3896 5346 2.602676 CCGGGAAGTCCACCACCAT 61.603 63.158 0.00 0.00 37.91 3.55
3949 5404 0.228742 CGAAAACACGACGACACCAG 59.771 55.000 0.00 0.00 35.09 4.00
3958 5413 1.802880 CGACGACACCAGAATCCATCC 60.803 57.143 0.00 0.00 0.00 3.51
4064 5520 6.081356 TCAGGATTAAACCCAGGAACAAAAT 58.919 36.000 0.00 0.00 0.00 1.82
4070 5526 3.603965 ACCCAGGAACAAAATACCACA 57.396 42.857 0.00 0.00 0.00 4.17
4214 5670 1.979308 CATCATGGCTCCTCTCCTCAT 59.021 52.381 0.00 0.00 0.00 2.90
4215 5671 1.714541 TCATGGCTCCTCTCCTCATC 58.285 55.000 0.00 0.00 0.00 2.92
4216 5672 0.686224 CATGGCTCCTCTCCTCATCC 59.314 60.000 0.00 0.00 0.00 3.51
4217 5673 0.473501 ATGGCTCCTCTCCTCATCCC 60.474 60.000 0.00 0.00 0.00 3.85
4218 5674 1.235696 GGCTCCTCTCCTCATCCCT 59.764 63.158 0.00 0.00 0.00 4.20
4219 5675 0.399806 GGCTCCTCTCCTCATCCCTT 60.400 60.000 0.00 0.00 0.00 3.95
4220 5676 1.047801 GCTCCTCTCCTCATCCCTTC 58.952 60.000 0.00 0.00 0.00 3.46
4221 5677 1.715785 CTCCTCTCCTCATCCCTTCC 58.284 60.000 0.00 0.00 0.00 3.46
4222 5678 0.266152 TCCTCTCCTCATCCCTTCCC 59.734 60.000 0.00 0.00 0.00 3.97
4223 5679 0.030705 CCTCTCCTCATCCCTTCCCA 60.031 60.000 0.00 0.00 0.00 4.37
4224 5680 1.415716 CCTCTCCTCATCCCTTCCCAT 60.416 57.143 0.00 0.00 0.00 4.00
4225 5681 2.416638 CTCTCCTCATCCCTTCCCATT 58.583 52.381 0.00 0.00 0.00 3.16
4226 5682 3.591789 CTCTCCTCATCCCTTCCCATTA 58.408 50.000 0.00 0.00 0.00 1.90
4227 5683 4.174383 CTCTCCTCATCCCTTCCCATTAT 58.826 47.826 0.00 0.00 0.00 1.28
4228 5684 5.345418 CTCTCCTCATCCCTTCCCATTATA 58.655 45.833 0.00 0.00 0.00 0.98
4229 5685 5.737318 TCTCCTCATCCCTTCCCATTATAA 58.263 41.667 0.00 0.00 0.00 0.98
4230 5686 6.342520 TCTCCTCATCCCTTCCCATTATAAT 58.657 40.000 0.00 0.00 0.00 1.28
4231 5687 7.496046 TCTCCTCATCCCTTCCCATTATAATA 58.504 38.462 0.00 0.00 0.00 0.98
4232 5688 7.967170 TCTCCTCATCCCTTCCCATTATAATAA 59.033 37.037 0.00 0.00 0.00 1.40
4233 5689 8.532774 TCCTCATCCCTTCCCATTATAATAAA 57.467 34.615 0.00 0.00 0.00 1.40
4234 5690 8.614814 TCCTCATCCCTTCCCATTATAATAAAG 58.385 37.037 0.00 3.16 0.00 1.85
4235 5691 8.614814 CCTCATCCCTTCCCATTATAATAAAGA 58.385 37.037 12.58 2.95 0.00 2.52
4238 5694 8.743714 CATCCCTTCCCATTATAATAAAGAAGC 58.256 37.037 17.71 0.00 0.00 3.86
4239 5695 7.821566 TCCCTTCCCATTATAATAAAGAAGCA 58.178 34.615 17.71 9.37 0.00 3.91
4240 5696 7.724061 TCCCTTCCCATTATAATAAAGAAGCAC 59.276 37.037 17.71 0.00 0.00 4.40
4241 5697 7.725844 CCCTTCCCATTATAATAAAGAAGCACT 59.274 37.037 17.71 0.00 0.00 4.40
4242 5698 8.571336 CCTTCCCATTATAATAAAGAAGCACTG 58.429 37.037 17.71 7.61 0.00 3.66
4243 5699 8.463930 TTCCCATTATAATAAAGAAGCACTGG 57.536 34.615 0.00 0.00 0.00 4.00
4244 5700 7.811282 TCCCATTATAATAAAGAAGCACTGGA 58.189 34.615 0.00 0.00 0.00 3.86
4245 5701 8.278639 TCCCATTATAATAAAGAAGCACTGGAA 58.721 33.333 0.00 0.00 0.00 3.53
4246 5702 8.571336 CCCATTATAATAAAGAAGCACTGGAAG 58.429 37.037 0.00 0.00 42.29 3.46
4247 5703 8.078596 CCATTATAATAAAGAAGCACTGGAAGC 58.921 37.037 0.00 0.00 37.60 3.86
4248 5704 8.623903 CATTATAATAAAGAAGCACTGGAAGCA 58.376 33.333 0.00 0.00 37.60 3.91
4249 5705 8.574251 TTATAATAAAGAAGCACTGGAAGCAA 57.426 30.769 0.00 0.00 37.60 3.91
4250 5706 5.789643 AATAAAGAAGCACTGGAAGCAAA 57.210 34.783 0.00 0.00 37.60 3.68
4251 5707 3.722728 AAAGAAGCACTGGAAGCAAAG 57.277 42.857 0.00 0.00 37.60 2.77
4252 5708 2.645838 AGAAGCACTGGAAGCAAAGA 57.354 45.000 0.00 0.00 37.60 2.52
4253 5709 2.225467 AGAAGCACTGGAAGCAAAGAC 58.775 47.619 0.00 0.00 37.60 3.01
4254 5710 1.268079 GAAGCACTGGAAGCAAAGACC 59.732 52.381 0.00 0.00 37.60 3.85
4255 5711 0.183492 AGCACTGGAAGCAAAGACCA 59.817 50.000 0.00 0.00 37.60 4.02
4256 5712 1.202976 AGCACTGGAAGCAAAGACCAT 60.203 47.619 0.00 0.00 37.60 3.55
4257 5713 1.615392 GCACTGGAAGCAAAGACCATT 59.385 47.619 0.00 0.00 37.60 3.16
4258 5714 2.352127 GCACTGGAAGCAAAGACCATTC 60.352 50.000 0.00 0.00 37.60 2.67
4259 5715 2.229784 CACTGGAAGCAAAGACCATTCC 59.770 50.000 0.00 0.00 41.34 3.01
4260 5716 2.158475 ACTGGAAGCAAAGACCATTCCA 60.158 45.455 5.47 5.47 46.80 3.53
4261 5717 2.956132 TGGAAGCAAAGACCATTCCAA 58.044 42.857 3.11 0.00 46.18 3.53
4262 5718 3.303938 TGGAAGCAAAGACCATTCCAAA 58.696 40.909 3.11 0.00 46.18 3.28
4263 5719 3.903090 TGGAAGCAAAGACCATTCCAAAT 59.097 39.130 3.11 0.00 46.18 2.32
4264 5720 4.248058 GGAAGCAAAGACCATTCCAAATG 58.752 43.478 0.00 0.00 40.78 2.32
4265 5721 3.967332 AGCAAAGACCATTCCAAATGG 57.033 42.857 15.48 15.48 44.54 3.16
4266 5722 3.509442 AGCAAAGACCATTCCAAATGGA 58.491 40.909 22.24 5.04 41.64 3.41
4267 5723 3.512724 AGCAAAGACCATTCCAAATGGAG 59.487 43.478 22.24 0.00 46.36 3.86
4268 5724 3.511146 GCAAAGACCATTCCAAATGGAGA 59.489 43.478 22.24 0.03 46.36 3.71
4269 5725 4.161001 GCAAAGACCATTCCAAATGGAGAT 59.839 41.667 22.24 3.28 46.36 2.75
4270 5726 5.337813 GCAAAGACCATTCCAAATGGAGATT 60.338 40.000 22.24 11.84 46.36 2.40
4271 5727 6.704310 CAAAGACCATTCCAAATGGAGATTT 58.296 36.000 22.24 15.81 46.36 2.17
4272 5728 7.579339 GCAAAGACCATTCCAAATGGAGATTTA 60.579 37.037 22.24 0.00 46.36 1.40
4273 5729 7.651027 AAGACCATTCCAAATGGAGATTTAG 57.349 36.000 22.24 0.00 46.36 1.85
4274 5730 6.131961 AGACCATTCCAAATGGAGATTTAGG 58.868 40.000 22.24 7.24 46.36 2.69
4275 5731 6.068853 AGACCATTCCAAATGGAGATTTAGGA 60.069 38.462 22.24 0.00 46.36 2.94
4276 5732 6.502138 ACCATTCCAAATGGAGATTTAGGAA 58.498 36.000 22.24 0.00 46.36 3.36
4277 5733 6.959366 ACCATTCCAAATGGAGATTTAGGAAA 59.041 34.615 22.24 0.00 46.36 3.13
4278 5734 7.093333 ACCATTCCAAATGGAGATTTAGGAAAC 60.093 37.037 22.24 0.00 46.36 2.78
4279 5735 7.124750 CCATTCCAAATGGAGATTTAGGAAACT 59.875 37.037 12.41 0.00 46.36 2.66
4280 5736 8.534496 CATTCCAAATGGAGATTTAGGAAACTT 58.466 33.333 1.86 0.00 46.36 2.66
4281 5737 9.768215 ATTCCAAATGGAGATTTAGGAAACTTA 57.232 29.630 1.86 0.00 46.36 2.24
4282 5738 8.575649 TCCAAATGGAGATTTAGGAAACTTAC 57.424 34.615 0.00 0.00 39.91 2.34
4283 5739 8.167392 TCCAAATGGAGATTTAGGAAACTTACA 58.833 33.333 0.00 0.00 39.91 2.41
4284 5740 8.971073 CCAAATGGAGATTTAGGAAACTTACAT 58.029 33.333 0.00 0.00 38.79 2.29
4287 5743 7.843490 TGGAGATTTAGGAAACTTACATTCG 57.157 36.000 0.00 0.00 43.67 3.34
4288 5744 7.617225 TGGAGATTTAGGAAACTTACATTCGA 58.383 34.615 0.00 0.00 43.67 3.71
4289 5745 8.098286 TGGAGATTTAGGAAACTTACATTCGAA 58.902 33.333 0.00 0.00 43.67 3.71
4290 5746 8.388853 GGAGATTTAGGAAACTTACATTCGAAC 58.611 37.037 0.00 0.00 43.67 3.95
4291 5747 7.960793 AGATTTAGGAAACTTACATTCGAACG 58.039 34.615 0.00 0.00 43.67 3.95
4292 5748 7.601508 AGATTTAGGAAACTTACATTCGAACGT 59.398 33.333 1.25 1.25 43.67 3.99
4293 5749 6.695292 TTAGGAAACTTACATTCGAACGTC 57.305 37.500 0.00 0.00 43.67 4.34
4294 5750 4.624015 AGGAAACTTACATTCGAACGTCA 58.376 39.130 0.00 0.00 37.44 4.35
4295 5751 4.446719 AGGAAACTTACATTCGAACGTCAC 59.553 41.667 0.00 0.00 37.44 3.67
4296 5752 4.376717 GGAAACTTACATTCGAACGTCACC 60.377 45.833 0.00 0.00 0.00 4.02
4297 5753 2.680577 ACTTACATTCGAACGTCACCC 58.319 47.619 0.00 0.00 0.00 4.61
4298 5754 2.298163 ACTTACATTCGAACGTCACCCT 59.702 45.455 0.00 0.00 0.00 4.34
4299 5755 3.507233 ACTTACATTCGAACGTCACCCTA 59.493 43.478 0.00 0.00 0.00 3.53
4300 5756 4.159135 ACTTACATTCGAACGTCACCCTAT 59.841 41.667 0.00 0.00 0.00 2.57
4301 5757 3.604875 ACATTCGAACGTCACCCTATT 57.395 42.857 0.00 0.00 0.00 1.73
4302 5758 4.724074 ACATTCGAACGTCACCCTATTA 57.276 40.909 0.00 0.00 0.00 0.98
4303 5759 4.427312 ACATTCGAACGTCACCCTATTAC 58.573 43.478 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 5.909621 AGTCGGTAACTTTAGCATGACTA 57.090 39.130 0.00 0.00 33.03 2.59
34 35 8.743085 TCCTCGTAACTATAACATGAGTAAGT 57.257 34.615 0.00 0.00 0.00 2.24
45 46 6.014647 AGTATGGCCATCCTCGTAACTATAA 58.985 40.000 24.80 0.00 0.00 0.98
105 106 6.556212 CCTGGTAACTATATCATGACTAGCG 58.444 44.000 0.00 0.00 37.61 4.26
110 111 4.495422 CGGCCTGGTAACTATATCATGAC 58.505 47.826 0.00 0.00 37.61 3.06
131 132 5.115480 AGTTTGGCAATTTTAATATGGGCG 58.885 37.500 0.00 0.00 0.00 6.13
159 160 1.268640 GCGACCTAGTAGCTGTAGCAC 60.269 57.143 6.65 2.93 45.16 4.40
185 186 8.375608 CTACTCGAGCAACCTAGTAACTATAA 57.624 38.462 13.61 0.00 0.00 0.98
186 187 7.959689 CTACTCGAGCAACCTAGTAACTATA 57.040 40.000 13.61 0.00 0.00 1.31
266 267 9.130661 TCTCTTGTATTTTTGTTGGATTTCTCA 57.869 29.630 0.00 0.00 0.00 3.27
373 376 3.408634 ACTCAACCCAATAACCAACTCG 58.591 45.455 0.00 0.00 0.00 4.18
429 434 3.426829 GGGCGAGAGAAAGAAAATGCTTC 60.427 47.826 0.00 0.00 0.00 3.86
498 505 1.122227 CCCATTTTTCGCCCATCCAT 58.878 50.000 0.00 0.00 0.00 3.41
531 538 1.286880 GCACCTCATGTGGTTGCAC 59.713 57.895 24.14 11.19 45.55 4.57
533 540 0.604578 ATTGCACCTCATGTGGTTGC 59.395 50.000 23.15 23.15 45.55 4.17
541 548 0.673333 TCGTTCGCATTGCACCTCAT 60.673 50.000 9.69 0.00 0.00 2.90
548 555 0.521242 GTGTCCATCGTTCGCATTGC 60.521 55.000 0.00 0.00 0.00 3.56
604 611 7.814107 ACGATGTCTAGTAACGAAAATTAACCA 59.186 33.333 0.00 0.00 0.00 3.67
630 638 3.593442 ACCAACTCACCATGAAGGAAA 57.407 42.857 0.00 0.00 41.22 3.13
667 675 4.237018 ACCCACACCTCCTAAGTTCTAAA 58.763 43.478 0.00 0.00 0.00 1.85
668 676 3.865571 ACCCACACCTCCTAAGTTCTAA 58.134 45.455 0.00 0.00 0.00 2.10
669 677 3.555117 ACCCACACCTCCTAAGTTCTA 57.445 47.619 0.00 0.00 0.00 2.10
747 755 9.189156 AGGTATACAATACATGCTGTGAAAAAT 57.811 29.630 5.01 0.00 0.00 1.82
773 781 9.509855 GTGCCGTGAAAAATAATTTCATGTATA 57.490 29.630 17.23 5.36 41.45 1.47
774 782 7.219917 CGTGCCGTGAAAAATAATTTCATGTAT 59.780 33.333 17.23 0.00 41.45 2.29
805 1012 1.987770 GACGAACGCGATCACCTAAAA 59.012 47.619 15.93 0.00 41.64 1.52
826 1033 2.070783 GCCAGTTGTTTGATTGCCATG 58.929 47.619 0.00 0.00 0.00 3.66
854 1061 1.523032 CTTTTAGGGGTAGCGCCGG 60.523 63.158 2.29 0.00 41.60 6.13
919 1126 3.751518 GGTGGACTTACAACATCCTGTT 58.248 45.455 0.00 0.00 42.08 3.16
977 1185 1.069296 CGTCCGCTTCATTTGCTTTGA 60.069 47.619 0.00 0.00 0.00 2.69
1010 1219 0.031994 CCCTTTGCTTGTTTGTCCCG 59.968 55.000 0.00 0.00 0.00 5.14
1022 1237 1.379977 GCTACCCCTTCCCCTTTGC 60.380 63.158 0.00 0.00 0.00 3.68
1342 2076 3.067180 ACTGCAAATTTAGGGCATCGATG 59.933 43.478 21.27 21.27 36.87 3.84
1408 2156 7.535489 ACACTATATTTTTAACGAGGCAGTC 57.465 36.000 0.00 0.00 0.00 3.51
1431 2179 5.046910 TCAGCAAGCAAGCTAATTTGTAC 57.953 39.130 2.41 0.00 44.54 2.90
1464 2216 4.442375 ACAGTGATACTTCGGTTCTCTG 57.558 45.455 0.00 0.00 35.44 3.35
1490 2242 6.806739 AGAAATTATGCAGGCGTAAAGTTTTC 59.193 34.615 15.98 15.98 32.08 2.29
1594 2346 5.722021 AAGGGGAATATGAACACAAACAC 57.278 39.130 0.00 0.00 0.00 3.32
1980 3132 8.044309 TGTAAGAGGAAAATTACCATCGATCAA 58.956 33.333 0.00 0.00 32.11 2.57
2072 3224 0.762418 ATGACTCCACAACGGTTGGA 59.238 50.000 23.51 12.89 35.57 3.53
2166 3322 4.694037 ACGAGGCCTACAAATTAACAAGAC 59.306 41.667 4.42 0.00 0.00 3.01
2188 3344 9.573133 CCATCTGTTCCAGTTTAAAATGATTAC 57.427 33.333 16.81 11.21 32.61 1.89
2232 3388 2.485659 TCCTTCTGGAGCAGGATCATT 58.514 47.619 0.00 0.00 37.46 2.57
2282 3438 2.184830 CCTGCGTGCATCCCTCATG 61.185 63.158 0.00 0.00 35.29 3.07
2530 3731 5.979517 GTCATTTGTTCTATTGCAATAGGCC 59.020 40.000 34.97 27.14 43.89 5.19
2531 3732 6.799512 AGTCATTTGTTCTATTGCAATAGGC 58.200 36.000 34.97 28.51 45.13 3.93
2577 3835 6.368779 AGTGCAGGACTACCAACTAAATAA 57.631 37.500 0.00 0.00 38.94 1.40
2593 3851 0.609957 TGAGCCAATGGAAGTGCAGG 60.610 55.000 2.05 0.00 0.00 4.85
2594 3852 1.404391 GATGAGCCAATGGAAGTGCAG 59.596 52.381 2.05 0.00 0.00 4.41
2621 3882 3.445096 AGGGCAAGCAGTTGATTCATTAC 59.555 43.478 0.00 0.00 35.46 1.89
2630 3891 3.733443 AAAGTAAAGGGCAAGCAGTTG 57.267 42.857 0.00 0.00 36.67 3.16
2731 3992 4.301637 GGTTTGGAACCCTTTATATGCG 57.698 45.455 0.00 0.00 46.12 4.73
2793 4079 1.371758 CGTGATGCCGTCGGGATAG 60.372 63.158 19.13 9.38 32.75 2.08
2798 4084 1.809619 ATGAACGTGATGCCGTCGG 60.810 57.895 6.99 6.99 40.85 4.79
2803 4089 0.676466 TGACCCATGAACGTGATGCC 60.676 55.000 0.00 0.00 0.00 4.40
2960 4247 1.096386 AACGTTACGCTTGGGTGCAA 61.096 50.000 4.09 0.00 0.00 4.08
2972 4259 1.461127 CAGCAGGCTCTTGAACGTTAC 59.539 52.381 0.00 0.00 0.00 2.50
3055 4342 5.053145 GCAGTGTCTATTCTGGTATTCTGG 58.947 45.833 0.00 0.00 32.94 3.86
3056 4343 5.664457 TGCAGTGTCTATTCTGGTATTCTG 58.336 41.667 0.00 0.00 32.94 3.02
3057 4344 5.683509 GCTGCAGTGTCTATTCTGGTATTCT 60.684 44.000 16.64 0.00 32.94 2.40
3058 4345 4.509600 GCTGCAGTGTCTATTCTGGTATTC 59.490 45.833 16.64 0.00 32.94 1.75
3059 4346 4.163078 AGCTGCAGTGTCTATTCTGGTATT 59.837 41.667 16.64 0.00 32.94 1.89
3060 4347 3.708631 AGCTGCAGTGTCTATTCTGGTAT 59.291 43.478 16.64 0.00 32.94 2.73
3061 4348 3.099905 AGCTGCAGTGTCTATTCTGGTA 58.900 45.455 16.64 0.00 32.94 3.25
3062 4349 1.905215 AGCTGCAGTGTCTATTCTGGT 59.095 47.619 16.64 0.00 32.94 4.00
3135 4547 0.741326 TTGCTTGGTAAAAGTGCGCA 59.259 45.000 5.66 5.66 0.00 6.09
3170 4582 6.890979 TGAGATGATGATCAGTACAGTAGG 57.109 41.667 0.09 0.00 0.00 3.18
3212 4627 2.607635 CCACCATAATGGAAAGTCGTCG 59.392 50.000 0.00 0.00 43.02 5.12
3213 4628 3.869065 TCCACCATAATGGAAAGTCGTC 58.131 45.455 0.00 0.00 46.08 4.20
3214 4629 3.992943 TCCACCATAATGGAAAGTCGT 57.007 42.857 0.00 0.00 46.08 4.34
3276 4698 1.557371 TGGTAATCAACATCCGGCTGA 59.443 47.619 13.24 5.07 0.00 4.26
3795 5245 5.621329 GCATTTCCCATTAACGTTAAGCAGT 60.621 40.000 23.78 6.49 0.00 4.40
3797 5247 4.218635 TGCATTTCCCATTAACGTTAAGCA 59.781 37.500 23.78 20.54 0.00 3.91
3798 5248 4.739195 TGCATTTCCCATTAACGTTAAGC 58.261 39.130 23.78 18.55 0.00 3.09
3799 5249 5.288472 GCTTGCATTTCCCATTAACGTTAAG 59.712 40.000 23.78 15.76 0.00 1.85
3802 5252 3.006323 TGCTTGCATTTCCCATTAACGTT 59.994 39.130 5.88 5.88 0.00 3.99
3803 5253 2.560542 TGCTTGCATTTCCCATTAACGT 59.439 40.909 0.00 0.00 0.00 3.99
3804 5254 3.229276 TGCTTGCATTTCCCATTAACG 57.771 42.857 0.00 0.00 0.00 3.18
3805 5255 4.122046 GGATGCTTGCATTTCCCATTAAC 58.878 43.478 9.59 0.00 0.00 2.01
3807 5257 3.372897 TGGATGCTTGCATTTCCCATTA 58.627 40.909 9.59 0.00 0.00 1.90
3809 5259 1.868713 TGGATGCTTGCATTTCCCAT 58.131 45.000 9.59 0.00 0.00 4.00
3811 5261 2.349590 GTTTGGATGCTTGCATTTCCC 58.650 47.619 9.59 7.13 0.00 3.97
3812 5262 2.289569 TGGTTTGGATGCTTGCATTTCC 60.290 45.455 9.59 8.69 0.00 3.13
3813 5263 3.042871 TGGTTTGGATGCTTGCATTTC 57.957 42.857 9.59 6.30 0.00 2.17
3814 5264 3.706600 ATGGTTTGGATGCTTGCATTT 57.293 38.095 9.59 0.00 0.00 2.32
3815 5265 3.770933 ACTATGGTTTGGATGCTTGCATT 59.229 39.130 9.59 0.00 0.00 3.56
3816 5266 3.368248 ACTATGGTTTGGATGCTTGCAT 58.632 40.909 7.91 7.91 0.00 3.96
3817 5267 2.806434 ACTATGGTTTGGATGCTTGCA 58.194 42.857 0.00 0.00 0.00 4.08
3818 5268 3.874392 AACTATGGTTTGGATGCTTGC 57.126 42.857 0.00 0.00 30.55 4.01
3819 5269 6.183360 CCTCTTAACTATGGTTTGGATGCTTG 60.183 42.308 0.00 0.00 36.92 4.01
3820 5270 5.888161 CCTCTTAACTATGGTTTGGATGCTT 59.112 40.000 0.00 0.00 36.92 3.91
3821 5271 5.440610 CCTCTTAACTATGGTTTGGATGCT 58.559 41.667 0.00 0.00 36.92 3.79
3822 5272 4.580580 CCCTCTTAACTATGGTTTGGATGC 59.419 45.833 0.00 0.00 36.92 3.91
3823 5273 5.133221 CCCCTCTTAACTATGGTTTGGATG 58.867 45.833 0.00 0.00 36.92 3.51
3824 5274 4.168088 CCCCCTCTTAACTATGGTTTGGAT 59.832 45.833 0.00 0.00 36.92 3.41
3825 5275 3.526019 CCCCCTCTTAACTATGGTTTGGA 59.474 47.826 0.00 0.00 36.92 3.53
3826 5276 3.898482 CCCCCTCTTAACTATGGTTTGG 58.102 50.000 0.00 0.00 36.92 3.28
3827 5277 3.288092 GCCCCCTCTTAACTATGGTTTG 58.712 50.000 0.00 0.00 36.92 2.93
3828 5278 2.092592 CGCCCCCTCTTAACTATGGTTT 60.093 50.000 0.00 0.00 36.92 3.27
3829 5279 1.489230 CGCCCCCTCTTAACTATGGTT 59.511 52.381 0.00 0.00 39.26 3.67
3830 5280 1.129058 CGCCCCCTCTTAACTATGGT 58.871 55.000 0.00 0.00 0.00 3.55
3831 5281 0.396811 CCGCCCCCTCTTAACTATGG 59.603 60.000 0.00 0.00 0.00 2.74
3832 5282 0.396811 CCCGCCCCCTCTTAACTATG 59.603 60.000 0.00 0.00 0.00 2.23
3833 5283 0.266753 TCCCGCCCCCTCTTAACTAT 59.733 55.000 0.00 0.00 0.00 2.12
3834 5284 0.043032 TTCCCGCCCCCTCTTAACTA 59.957 55.000 0.00 0.00 0.00 2.24
3835 5285 0.843343 TTTCCCGCCCCCTCTTAACT 60.843 55.000 0.00 0.00 0.00 2.24
3836 5286 0.393944 CTTTCCCGCCCCCTCTTAAC 60.394 60.000 0.00 0.00 0.00 2.01
3837 5287 1.568118 CCTTTCCCGCCCCCTCTTAA 61.568 60.000 0.00 0.00 0.00 1.85
3838 5288 1.999002 CCTTTCCCGCCCCCTCTTA 60.999 63.158 0.00 0.00 0.00 2.10
3839 5289 3.339093 CCTTTCCCGCCCCCTCTT 61.339 66.667 0.00 0.00 0.00 2.85
3860 5310 0.804989 GGCTATGCGTTGAACTTGCT 59.195 50.000 0.00 0.00 0.00 3.91
3949 5404 8.697507 AAAGTGTTAATAGGATGGATGGATTC 57.302 34.615 0.00 0.00 0.00 2.52
3958 5413 6.970613 GGGCGTTTAAAAGTGTTAATAGGATG 59.029 38.462 3.09 0.00 0.00 3.51
4027 5483 3.550437 AATCCTGATACCTGTGAGTGC 57.450 47.619 0.00 0.00 0.00 4.40
4064 5520 9.005777 GGTCTAATTTTGTTTCAGTATGTGGTA 57.994 33.333 0.00 0.00 37.40 3.25
4070 5526 8.739972 GGTGATGGTCTAATTTTGTTTCAGTAT 58.260 33.333 0.00 0.00 0.00 2.12
4085 5541 2.256306 TCTGTTGCTGGTGATGGTCTA 58.744 47.619 0.00 0.00 0.00 2.59
4117 5573 1.071128 GCTAGGCTGATGGCAGGAG 59.929 63.158 0.00 0.00 42.53 3.69
4214 5670 7.724061 GTGCTTCTTTATTATAATGGGAAGGGA 59.276 37.037 22.98 12.31 32.18 4.20
4215 5671 7.725844 AGTGCTTCTTTATTATAATGGGAAGGG 59.274 37.037 22.98 14.98 32.18 3.95
4216 5672 8.571336 CAGTGCTTCTTTATTATAATGGGAAGG 58.429 37.037 22.98 9.18 32.18 3.46
4217 5673 8.571336 CCAGTGCTTCTTTATTATAATGGGAAG 58.429 37.037 20.36 20.36 33.93 3.46
4218 5674 8.278639 TCCAGTGCTTCTTTATTATAATGGGAA 58.721 33.333 8.28 8.31 0.00 3.97
4219 5675 7.811282 TCCAGTGCTTCTTTATTATAATGGGA 58.189 34.615 8.28 1.28 0.00 4.37
4220 5676 8.463930 TTCCAGTGCTTCTTTATTATAATGGG 57.536 34.615 8.28 0.00 0.00 4.00
4221 5677 8.078596 GCTTCCAGTGCTTCTTTATTATAATGG 58.921 37.037 8.28 0.00 0.00 3.16
4222 5678 8.623903 TGCTTCCAGTGCTTCTTTATTATAATG 58.376 33.333 8.28 0.00 0.00 1.90
4223 5679 8.752005 TGCTTCCAGTGCTTCTTTATTATAAT 57.248 30.769 2.97 2.97 0.00 1.28
4224 5680 8.574251 TTGCTTCCAGTGCTTCTTTATTATAA 57.426 30.769 0.00 0.00 0.00 0.98
4225 5681 8.574251 TTTGCTTCCAGTGCTTCTTTATTATA 57.426 30.769 0.00 0.00 0.00 0.98
4226 5682 7.394359 TCTTTGCTTCCAGTGCTTCTTTATTAT 59.606 33.333 0.00 0.00 0.00 1.28
4227 5683 6.714810 TCTTTGCTTCCAGTGCTTCTTTATTA 59.285 34.615 0.00 0.00 0.00 0.98
4228 5684 5.536161 TCTTTGCTTCCAGTGCTTCTTTATT 59.464 36.000 0.00 0.00 0.00 1.40
4229 5685 5.048434 GTCTTTGCTTCCAGTGCTTCTTTAT 60.048 40.000 0.00 0.00 0.00 1.40
4230 5686 4.275936 GTCTTTGCTTCCAGTGCTTCTTTA 59.724 41.667 0.00 0.00 0.00 1.85
4231 5687 3.067320 GTCTTTGCTTCCAGTGCTTCTTT 59.933 43.478 0.00 0.00 0.00 2.52
4232 5688 2.620585 GTCTTTGCTTCCAGTGCTTCTT 59.379 45.455 0.00 0.00 0.00 2.52
4233 5689 2.225467 GTCTTTGCTTCCAGTGCTTCT 58.775 47.619 0.00 0.00 0.00 2.85
4234 5690 1.268079 GGTCTTTGCTTCCAGTGCTTC 59.732 52.381 0.00 0.00 0.00 3.86
4235 5691 1.322442 GGTCTTTGCTTCCAGTGCTT 58.678 50.000 0.00 0.00 0.00 3.91
4236 5692 0.183492 TGGTCTTTGCTTCCAGTGCT 59.817 50.000 0.00 0.00 0.00 4.40
4237 5693 1.251251 ATGGTCTTTGCTTCCAGTGC 58.749 50.000 0.00 0.00 34.62 4.40
4238 5694 2.229784 GGAATGGTCTTTGCTTCCAGTG 59.770 50.000 0.00 0.00 37.65 3.66
4239 5695 2.158475 TGGAATGGTCTTTGCTTCCAGT 60.158 45.455 0.00 0.00 41.60 4.00
4240 5696 2.517959 TGGAATGGTCTTTGCTTCCAG 58.482 47.619 0.00 0.00 41.60 3.86
4241 5697 2.673775 TGGAATGGTCTTTGCTTCCA 57.326 45.000 0.00 0.00 43.63 3.53
4242 5698 4.248058 CATTTGGAATGGTCTTTGCTTCC 58.752 43.478 0.00 0.00 38.10 3.46
4243 5699 4.021192 TCCATTTGGAATGGTCTTTGCTTC 60.021 41.667 16.82 0.00 42.18 3.86
4244 5700 3.903090 TCCATTTGGAATGGTCTTTGCTT 59.097 39.130 16.82 0.00 42.18 3.91
4245 5701 3.509442 TCCATTTGGAATGGTCTTTGCT 58.491 40.909 16.82 0.00 42.18 3.91
4246 5702 3.511146 TCTCCATTTGGAATGGTCTTTGC 59.489 43.478 16.82 0.00 44.91 3.68
4247 5703 5.927281 ATCTCCATTTGGAATGGTCTTTG 57.073 39.130 16.82 6.42 44.91 2.77
4248 5704 6.940430 AAATCTCCATTTGGAATGGTCTTT 57.060 33.333 16.82 12.37 44.91 2.52
4249 5705 6.608808 CCTAAATCTCCATTTGGAATGGTCTT 59.391 38.462 16.82 9.92 44.91 3.01
4250 5706 6.068853 TCCTAAATCTCCATTTGGAATGGTCT 60.069 38.462 16.82 3.56 44.91 3.85
4251 5707 6.129179 TCCTAAATCTCCATTTGGAATGGTC 58.871 40.000 16.82 0.00 44.91 4.02
4252 5708 6.091076 TCCTAAATCTCCATTTGGAATGGT 57.909 37.500 16.82 3.13 44.91 3.55
4253 5709 7.124750 AGTTTCCTAAATCTCCATTTGGAATGG 59.875 37.037 12.43 12.43 44.91 3.16
4254 5710 8.071177 AGTTTCCTAAATCTCCATTTGGAATG 57.929 34.615 0.18 0.00 44.91 2.67
4255 5711 8.670521 AAGTTTCCTAAATCTCCATTTGGAAT 57.329 30.769 0.18 0.00 44.91 3.01
4256 5712 9.020731 GTAAGTTTCCTAAATCTCCATTTGGAA 57.979 33.333 0.18 0.00 44.91 3.53
4257 5713 8.167392 TGTAAGTTTCCTAAATCTCCATTTGGA 58.833 33.333 0.00 0.00 43.08 3.53
4258 5714 8.348285 TGTAAGTTTCCTAAATCTCCATTTGG 57.652 34.615 0.00 0.00 33.95 3.28
4261 5717 8.893727 CGAATGTAAGTTTCCTAAATCTCCATT 58.106 33.333 0.00 0.00 0.00 3.16
4262 5718 8.265055 TCGAATGTAAGTTTCCTAAATCTCCAT 58.735 33.333 0.00 0.00 0.00 3.41
4263 5719 7.617225 TCGAATGTAAGTTTCCTAAATCTCCA 58.383 34.615 0.00 0.00 0.00 3.86
4264 5720 8.388853 GTTCGAATGTAAGTTTCCTAAATCTCC 58.611 37.037 0.00 0.00 0.00 3.71
4265 5721 8.108782 CGTTCGAATGTAAGTTTCCTAAATCTC 58.891 37.037 9.29 0.00 0.00 2.75
4266 5722 7.601508 ACGTTCGAATGTAAGTTTCCTAAATCT 59.398 33.333 21.20 0.00 0.00 2.40
4267 5723 7.736447 ACGTTCGAATGTAAGTTTCCTAAATC 58.264 34.615 21.20 0.00 0.00 2.17
4268 5724 7.385752 TGACGTTCGAATGTAAGTTTCCTAAAT 59.614 33.333 22.45 0.00 0.00 1.40
4269 5725 6.700960 TGACGTTCGAATGTAAGTTTCCTAAA 59.299 34.615 22.45 0.00 0.00 1.85
4270 5726 6.144402 GTGACGTTCGAATGTAAGTTTCCTAA 59.856 38.462 22.45 0.00 0.00 2.69
4271 5727 5.630680 GTGACGTTCGAATGTAAGTTTCCTA 59.369 40.000 22.45 0.00 0.00 2.94
4272 5728 4.446719 GTGACGTTCGAATGTAAGTTTCCT 59.553 41.667 22.45 0.00 0.00 3.36
4273 5729 4.376717 GGTGACGTTCGAATGTAAGTTTCC 60.377 45.833 22.45 9.41 0.00 3.13
4274 5730 4.376717 GGGTGACGTTCGAATGTAAGTTTC 60.377 45.833 22.45 9.93 0.00 2.78
4275 5731 3.495753 GGGTGACGTTCGAATGTAAGTTT 59.504 43.478 22.45 0.00 0.00 2.66
4276 5732 3.062042 GGGTGACGTTCGAATGTAAGTT 58.938 45.455 22.45 0.00 0.00 2.66
4277 5733 2.298163 AGGGTGACGTTCGAATGTAAGT 59.702 45.455 22.45 7.80 0.00 2.24
4278 5734 2.955614 AGGGTGACGTTCGAATGTAAG 58.044 47.619 22.45 4.72 0.00 2.34
4279 5735 4.724074 ATAGGGTGACGTTCGAATGTAA 57.276 40.909 22.45 13.34 0.00 2.41
4280 5736 4.724074 AATAGGGTGACGTTCGAATGTA 57.276 40.909 22.45 6.92 0.00 2.29
4281 5737 3.604875 AATAGGGTGACGTTCGAATGT 57.395 42.857 22.58 22.58 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.