Multiple sequence alignment - TraesCS3B01G264900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G264900 chr3B 100.000 7103 0 0 1 7103 423812064 423804962 0.000000e+00 13117.0
1 TraesCS3B01G264900 chr3B 78.443 501 81 22 1130 1617 423796453 423795967 1.160000e-77 302.0
2 TraesCS3B01G264900 chr3B 98.361 61 1 0 652 712 423811353 423811413 2.710000e-19 108.0
3 TraesCS3B01G264900 chr3B 100.000 34 0 0 5144 5177 423806889 423806856 5.950000e-06 63.9
4 TraesCS3B01G264900 chr3B 100.000 34 0 0 5176 5209 423806921 423806888 5.950000e-06 63.9
5 TraesCS3B01G264900 chr3B 97.297 37 1 0 646 682 808971525 808971561 5.950000e-06 63.9
6 TraesCS3B01G264900 chr3B 97.143 35 0 1 648 682 395693667 395693700 2.770000e-04 58.4
7 TraesCS3B01G264900 chr3A 94.646 2148 71 15 2339 4477 438605206 438607318 0.000000e+00 3290.0
8 TraesCS3B01G264900 chr3A 90.134 1642 47 30 708 2297 438603634 438605212 0.000000e+00 2028.0
9 TraesCS3B01G264900 chr3A 95.954 692 22 5 5176 5865 438607992 438608679 0.000000e+00 1118.0
10 TraesCS3B01G264900 chr3A 94.395 678 36 2 5959 6635 438608678 438609354 0.000000e+00 1040.0
11 TraesCS3B01G264900 chr3A 84.832 567 46 21 1 538 438602906 438603461 1.050000e-147 534.0
12 TraesCS3B01G264900 chr3A 91.429 385 18 5 4804 5177 438607645 438608025 1.370000e-141 514.0
13 TraesCS3B01G264900 chr3A 94.882 254 13 0 6632 6885 438609460 438609713 1.440000e-106 398.0
14 TraesCS3B01G264900 chr3A 88.608 316 21 8 4476 4784 438607348 438607655 3.130000e-98 370.0
15 TraesCS3B01G264900 chr3A 77.604 576 87 29 1058 1619 438611895 438612442 1.920000e-80 311.0
16 TraesCS3B01G264900 chr3A 93.043 115 4 4 541 651 438603525 438603639 1.590000e-36 165.0
17 TraesCS3B01G264900 chr3A 87.255 102 8 5 1836 1934 623615767 623615668 2.090000e-20 111.0
18 TraesCS3B01G264900 chr3A 92.208 77 5 1 3049 3124 510299789 510299865 2.710000e-19 108.0
19 TraesCS3B01G264900 chr3D 97.040 1757 45 5 5176 6929 326696863 326695111 0.000000e+00 2950.0
20 TraesCS3B01G264900 chr3D 95.633 1603 36 11 711 2297 326700156 326698572 0.000000e+00 2542.0
21 TraesCS3B01G264900 chr3D 98.111 1006 17 2 2339 3344 326698578 326697575 0.000000e+00 1751.0
22 TraesCS3B01G264900 chr3D 97.150 386 9 2 4400 4784 326697577 326697193 0.000000e+00 651.0
23 TraesCS3B01G264900 chr3D 96.791 374 11 1 4804 5177 326697203 326696831 2.180000e-174 623.0
24 TraesCS3B01G264900 chr3D 84.331 568 48 23 1 541 326700884 326700331 1.060000e-142 518.0
25 TraesCS3B01G264900 chr3D 77.479 595 87 30 1039 1619 326552605 326552044 5.350000e-81 313.0
26 TraesCS3B01G264900 chr3D 97.391 115 3 0 541 655 326700270 326700156 5.620000e-46 196.0
27 TraesCS3B01G264900 chr3D 93.506 77 4 1 3049 3124 389633140 389633216 5.820000e-21 113.0
28 TraesCS3B01G264900 chr4B 96.262 107 3 1 5864 5969 658516033 658515927 2.630000e-39 174.0
29 TraesCS3B01G264900 chr4B 85.437 103 9 5 1823 1922 492223438 492223537 1.260000e-17 102.0
30 TraesCS3B01G264900 chr4B 97.959 49 1 0 4637 4685 158268789 158268837 1.270000e-12 86.1
31 TraesCS3B01G264900 chr4B 95.122 41 1 1 688 728 424201859 424201820 5.950000e-06 63.9
32 TraesCS3B01G264900 chr4D 97.000 100 3 0 5861 5960 494042369 494042468 1.230000e-37 169.0
33 TraesCS3B01G264900 chr4D 90.909 44 3 1 686 729 378891274 378891232 2.770000e-04 58.4
34 TraesCS3B01G264900 chr5D 93.636 110 7 0 5858 5967 565059467 565059358 1.590000e-36 165.0
35 TraesCS3B01G264900 chr5D 94.393 107 5 1 5860 5966 205794745 205794640 5.700000e-36 163.0
36 TraesCS3B01G264900 chr5D 92.222 90 7 0 4963 5052 134916490 134916579 2.080000e-25 128.0
37 TraesCS3B01G264900 chr5D 97.368 38 1 0 683 720 208140899 208140936 1.650000e-06 65.8
38 TraesCS3B01G264900 chr7B 94.340 106 6 0 5863 5968 562993065 562993170 5.700000e-36 163.0
39 TraesCS3B01G264900 chr7B 92.308 91 7 0 4962 5052 153326933 153326843 5.780000e-26 130.0
40 TraesCS3B01G264900 chr7B 88.506 87 9 1 3039 3124 482484951 482485037 3.500000e-18 104.0
41 TraesCS3B01G264900 chr7B 94.340 53 3 0 4639 4691 427885045 427885097 1.640000e-11 82.4
42 TraesCS3B01G264900 chr7B 95.238 42 1 1 688 729 268535098 268535138 1.650000e-06 65.8
43 TraesCS3B01G264900 chr6B 94.393 107 5 1 5857 5962 605587364 605587258 5.700000e-36 163.0
44 TraesCS3B01G264900 chr6B 85.149 101 11 3 3038 3136 518388985 518389083 4.530000e-17 100.0
45 TraesCS3B01G264900 chr6B 94.545 55 3 0 4638 4692 135867630 135867576 1.270000e-12 86.1
46 TraesCS3B01G264900 chr6B 97.368 38 0 1 646 683 360635253 360635289 5.950000e-06 63.9
47 TraesCS3B01G264900 chr6B 93.023 43 2 1 688 730 627174671 627174712 2.140000e-05 62.1
48 TraesCS3B01G264900 chr6B 93.023 43 2 1 688 730 667550226 667550185 2.140000e-05 62.1
49 TraesCS3B01G264900 chr7D 93.578 109 5 2 5861 5967 58787934 58788042 2.050000e-35 161.0
50 TraesCS3B01G264900 chr7D 88.571 105 9 3 4949 5052 131468349 131468451 2.690000e-24 124.0
51 TraesCS3B01G264900 chr7D 89.362 94 7 3 1832 1924 464039173 464039264 1.620000e-21 115.0
52 TraesCS3B01G264900 chr7D 85.185 81 8 3 1886 1966 413232897 413232821 5.910000e-11 80.5
53 TraesCS3B01G264900 chr7D 91.525 59 3 2 4629 4685 627356156 627356214 5.910000e-11 80.5
54 TraesCS3B01G264900 chr1D 91.525 118 8 1 5864 5981 37458231 37458346 2.050000e-35 161.0
55 TraesCS3B01G264900 chr1D 89.773 88 7 2 1836 1922 326159343 326159429 2.090000e-20 111.0
56 TraesCS3B01G264900 chr1D 89.130 92 4 5 1836 1924 59951938 59951850 7.530000e-20 110.0
57 TraesCS3B01G264900 chr1D 87.640 89 9 2 3037 3124 372835960 372836047 1.260000e-17 102.0
58 TraesCS3B01G264900 chr1D 84.762 105 9 4 3045 3142 480792851 480792955 1.630000e-16 99.0
59 TraesCS3B01G264900 chr1D 94.545 55 2 1 4640 4693 19340805 19340751 4.570000e-12 84.2
60 TraesCS3B01G264900 chr1D 82.716 81 14 0 1221 1301 342873145 342873225 9.880000e-09 73.1
61 TraesCS3B01G264900 chr1D 89.362 47 4 1 683 729 48322582 48322537 2.770000e-04 58.4
62 TraesCS3B01G264900 chr4A 88.462 130 11 3 6977 7103 501548349 501548221 3.430000e-33 154.0
63 TraesCS3B01G264900 chr4A 92.473 93 5 2 4963 5055 625404774 625404864 1.610000e-26 132.0
64 TraesCS3B01G264900 chr4A 92.308 91 7 0 4966 5056 565436208 565436118 5.780000e-26 130.0
65 TraesCS3B01G264900 chr4A 100.000 49 0 0 4640 4688 629375445 629375397 2.730000e-14 91.6
66 TraesCS3B01G264900 chr4A 94.595 37 2 0 646 682 607427395 607427359 2.770000e-04 58.4
67 TraesCS3B01G264900 chr6A 93.478 92 5 1 4961 5052 548408055 548408145 1.240000e-27 135.0
68 TraesCS3B01G264900 chr6A 88.889 90 8 2 1836 1924 604890659 604890747 7.530000e-20 110.0
69 TraesCS3B01G264900 chr6A 100.000 35 0 0 2304 2338 37840249 37840283 1.650000e-06 65.8
70 TraesCS3B01G264900 chr6D 93.258 89 6 0 4967 5055 122992191 122992103 1.610000e-26 132.0
71 TraesCS3B01G264900 chr6D 96.364 55 1 1 4639 4692 62122873 62122927 9.810000e-14 89.8
72 TraesCS3B01G264900 chr2D 81.098 164 21 8 1137 1298 92736704 92736859 9.680000e-24 122.0
73 TraesCS3B01G264900 chr2D 100.000 38 0 0 2304 2341 73412617 73412580 3.550000e-08 71.3
74 TraesCS3B01G264900 chr2B 81.098 164 21 8 1137 1298 144021269 144021424 9.680000e-24 122.0
75 TraesCS3B01G264900 chr2B 88.372 86 6 4 3039 3123 692467663 692467745 4.530000e-17 100.0
76 TraesCS3B01G264900 chr2B 86.111 72 7 3 648 718 445256703 445256772 2.750000e-09 75.0
77 TraesCS3B01G264900 chr5B 92.593 81 5 1 3045 3124 391148415 391148495 1.620000e-21 115.0
78 TraesCS3B01G264900 chr1A 90.476 84 6 2 1842 1924 568391287 568391205 7.530000e-20 110.0
79 TraesCS3B01G264900 chr1A 82.716 81 14 0 1221 1301 442606754 442606834 9.880000e-09 73.1
80 TraesCS3B01G264900 chr7A 81.955 133 12 6 1836 1966 474730887 474730765 1.260000e-17 102.0
81 TraesCS3B01G264900 chr5A 100.000 46 0 0 4640 4685 547648827 547648782 1.270000e-12 86.1
82 TraesCS3B01G264900 chr5A 94.737 38 2 0 645 682 483717283 483717246 7.690000e-05 60.2
83 TraesCS3B01G264900 chrUn 97.297 37 1 0 646 682 104989575 104989539 5.950000e-06 63.9
84 TraesCS3B01G264900 chr1B 97.222 36 0 1 648 683 118420573 118420607 7.690000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G264900 chr3B 423804962 423812064 7102 True 13117.000000 13117 100.000000 1 7103 1 chr3B.!!$R2 7102
1 TraesCS3B01G264900 chr3A 438602906 438612442 9536 False 976.800000 3290 90.552700 1 6885 10 chr3A.!!$F2 6884
2 TraesCS3B01G264900 chr3D 326695111 326700884 5773 True 1318.714286 2950 95.206714 1 6929 7 chr3D.!!$R2 6928
3 TraesCS3B01G264900 chr3D 326552044 326552605 561 True 313.000000 313 77.479000 1039 1619 1 chr3D.!!$R1 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 1.678101 GGTCTGCTTGCAAGTCTGTTT 59.322 47.619 26.55 0.0 0.00 2.83 F
668 776 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.0 0.00 3.28 F
675 783 2.026636 TCCCTCCGTTCCAAAATAGGTG 60.027 50.000 0.00 0.0 0.00 4.00 F
2320 2503 0.251608 AATTTGAAGGTCACCGGGGG 60.252 55.000 2.42 0.0 0.00 5.40 F
3368 3557 0.251209 GACCAAACTCTCCCCCAACC 60.251 60.000 0.00 0.0 0.00 3.77 F
3713 3902 0.885879 CCAAAGAGCTGCTGCATGAA 59.114 50.000 18.42 0.0 42.74 2.57 F
5026 5261 0.521735 GGGTTAGTTCAAAGCTGCGG 59.478 55.000 0.00 0.0 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1939 2122 2.482721 CCGGTCCATATTAATTGTCGCC 59.517 50.0 0.00 0.00 0.00 5.54 R
2301 2484 0.251608 CCCCCGGTGACCTTCAAATT 60.252 55.0 0.00 0.00 0.00 1.82 R
2325 2508 0.404040 TTTACAGGTGGAGGGCCTTG 59.596 55.0 7.89 3.59 33.31 3.61 R
3682 3871 0.034670 CTCTTTGGGCCCTCTGGAAG 60.035 60.0 25.70 17.70 0.00 3.46 R
4371 4563 1.347062 TGGAAAGGGATTTTGTGGGC 58.653 50.0 0.00 0.00 0.00 5.36 R
5561 5798 0.622136 ATGCTGCTGAAGGGTGATCA 59.378 50.0 0.00 0.00 0.00 2.92 R
6946 7294 0.105760 TGGAGGGTGGCAAAACATGT 60.106 50.0 0.00 0.00 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.678101 GGTCTGCTTGCAAGTCTGTTT 59.322 47.619 26.55 0.00 0.00 2.83
27 28 3.732721 GCTTGCAAGTCTGTTTGAATGTC 59.267 43.478 26.55 1.94 0.00 3.06
53 54 4.922692 TGACTTTTGTTGTGCTTTCAGTTG 59.077 37.500 0.00 0.00 0.00 3.16
58 59 3.088532 TGTTGTGCTTTCAGTTGGTTCT 58.911 40.909 0.00 0.00 0.00 3.01
100 101 7.951347 AAGATAATCTCTTGCCAGTCATTTT 57.049 32.000 0.00 0.00 42.76 1.82
101 102 7.951347 AGATAATCTCTTGCCAGTCATTTTT 57.049 32.000 0.00 0.00 0.00 1.94
204 226 6.650807 CACTCTATGGAAGCAAAGTGTTTCTA 59.349 38.462 5.07 0.00 37.66 2.10
218 240 6.575162 AGTGTTTCTATTTCAATCGCCTTT 57.425 33.333 0.00 0.00 0.00 3.11
335 357 3.961182 TCTATCAGGATGTTAACGACGC 58.039 45.455 0.26 0.00 37.40 5.19
373 395 6.617529 GCACTAAAATTACGGCAAACAATTGG 60.618 38.462 10.83 0.00 37.02 3.16
388 410 8.859156 GCAAACAATTGGCATATATAATTACGG 58.141 33.333 10.83 0.00 37.02 4.02
404 447 6.524101 AATTACGGTTCACATTTAGCCAAT 57.476 33.333 0.00 0.00 0.00 3.16
508 551 7.011482 GCGATTTTCTAGTTTCCAGTATGACAT 59.989 37.037 0.00 0.00 39.69 3.06
560 664 4.414956 ATGGTCCTCCTGCCCCGA 62.415 66.667 0.00 0.00 34.23 5.14
600 704 6.316140 CCGAGTTCACCTCATTGATTTCATAA 59.684 38.462 0.00 0.00 40.48 1.90
655 763 8.894768 AACAATATTGCTCCAGAATACTACTC 57.105 34.615 15.48 0.00 0.00 2.59
656 764 7.445945 ACAATATTGCTCCAGAATACTACTCC 58.554 38.462 15.48 0.00 0.00 3.85
657 765 4.965200 ATTGCTCCAGAATACTACTCCC 57.035 45.455 0.00 0.00 0.00 4.30
658 766 3.689872 TGCTCCAGAATACTACTCCCT 57.310 47.619 0.00 0.00 0.00 4.20
659 767 3.567397 TGCTCCAGAATACTACTCCCTC 58.433 50.000 0.00 0.00 0.00 4.30
660 768 2.894765 GCTCCAGAATACTACTCCCTCC 59.105 54.545 0.00 0.00 0.00 4.30
661 769 3.150767 CTCCAGAATACTACTCCCTCCG 58.849 54.545 0.00 0.00 0.00 4.63
662 770 2.512896 TCCAGAATACTACTCCCTCCGT 59.487 50.000 0.00 0.00 0.00 4.69
663 771 3.053095 TCCAGAATACTACTCCCTCCGTT 60.053 47.826 0.00 0.00 0.00 4.44
664 772 3.318557 CCAGAATACTACTCCCTCCGTTC 59.681 52.174 0.00 0.00 0.00 3.95
665 773 3.318557 CAGAATACTACTCCCTCCGTTCC 59.681 52.174 0.00 0.00 0.00 3.62
666 774 3.053095 AGAATACTACTCCCTCCGTTCCA 60.053 47.826 0.00 0.00 0.00 3.53
667 775 2.905415 TACTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
668 776 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
669 777 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
670 778 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
671 779 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
672 780 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
673 781 2.238898 ACTCCCTCCGTTCCAAAATAGG 59.761 50.000 0.00 0.00 0.00 2.57
674 782 2.238898 CTCCCTCCGTTCCAAAATAGGT 59.761 50.000 0.00 0.00 0.00 3.08
675 783 2.026636 TCCCTCCGTTCCAAAATAGGTG 60.027 50.000 0.00 0.00 0.00 4.00
676 784 2.026636 CCCTCCGTTCCAAAATAGGTGA 60.027 50.000 0.00 0.00 0.00 4.02
677 785 3.007635 CCTCCGTTCCAAAATAGGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
678 786 3.007635 CTCCGTTCCAAAATAGGTGACC 58.992 50.000 0.00 0.00 0.00 4.02
679 787 2.089201 CCGTTCCAAAATAGGTGACCC 58.911 52.381 0.00 0.00 0.00 4.46
680 788 2.553466 CCGTTCCAAAATAGGTGACCCA 60.553 50.000 0.00 0.00 0.00 4.51
681 789 3.150767 CGTTCCAAAATAGGTGACCCAA 58.849 45.455 0.00 0.00 0.00 4.12
682 790 3.761752 CGTTCCAAAATAGGTGACCCAAT 59.238 43.478 0.00 0.00 0.00 3.16
683 791 4.380444 CGTTCCAAAATAGGTGACCCAATG 60.380 45.833 0.00 0.00 0.00 2.82
684 792 3.707316 TCCAAAATAGGTGACCCAATGG 58.293 45.455 0.00 0.35 37.80 3.16
698 806 2.765699 CCCAATGGGTCACCTATTTTGG 59.234 50.000 10.91 4.09 38.25 3.28
699 807 3.565449 CCCAATGGGTCACCTATTTTGGA 60.565 47.826 13.03 0.00 38.25 3.53
700 808 4.093011 CCAATGGGTCACCTATTTTGGAA 58.907 43.478 6.72 0.00 36.34 3.53
701 809 4.081697 CCAATGGGTCACCTATTTTGGAAC 60.082 45.833 6.72 0.00 36.34 3.62
702 810 2.785562 TGGGTCACCTATTTTGGAACG 58.214 47.619 0.00 0.00 37.76 3.95
703 811 2.089201 GGGTCACCTATTTTGGAACGG 58.911 52.381 0.00 0.00 0.00 4.44
704 812 2.290450 GGGTCACCTATTTTGGAACGGA 60.290 50.000 0.00 0.00 0.00 4.69
705 813 3.007635 GGTCACCTATTTTGGAACGGAG 58.992 50.000 0.00 0.00 0.00 4.63
706 814 3.007635 GTCACCTATTTTGGAACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
707 815 2.026636 TCACCTATTTTGGAACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
708 816 2.026636 CACCTATTTTGGAACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
709 817 2.238898 ACCTATTTTGGAACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
710 818 2.238898 CCTATTTTGGAACGGAGGGAGT 59.761 50.000 0.00 0.00 0.00 3.85
807 915 4.031028 CACGCAAGAGAAAAGAAAGTGTG 58.969 43.478 0.00 0.00 43.62 3.82
825 933 6.560253 AGTGTGGTATGATCTTGTTTCAAC 57.440 37.500 0.00 0.00 0.00 3.18
831 939 2.778299 TGATCTTGTTTCAACGGAGGG 58.222 47.619 0.00 0.00 0.00 4.30
1098 1244 4.770874 GCGGTGGCGGTGGTACAT 62.771 66.667 0.00 0.00 44.52 2.29
1778 1945 9.282247 GTAATATTTGTTGCAGAAGATGTTGAG 57.718 33.333 0.00 0.00 0.00 3.02
1934 2117 5.500234 TGGATCAGAGGGAAAGTTGTATTG 58.500 41.667 0.00 0.00 0.00 1.90
1939 2122 5.874810 TCAGAGGGAAAGTTGTATTGAATCG 59.125 40.000 0.00 0.00 0.00 3.34
1957 2140 5.178623 TGAATCGGCGACAATTAATATGGAC 59.821 40.000 13.76 0.00 0.00 4.02
2065 2248 5.435545 AGGGAGTAGTATATTTGGTCCCT 57.564 43.478 0.93 0.93 46.40 4.20
2222 2405 6.985645 GCATTATGATGGGACTGCAAATAAAA 59.014 34.615 0.00 0.00 33.72 1.52
2318 2501 3.744238 AAAAATTTGAAGGTCACCGGG 57.256 42.857 6.32 0.00 0.00 5.73
2319 2502 1.627864 AAATTTGAAGGTCACCGGGG 58.372 50.000 6.32 0.00 0.00 5.73
2320 2503 0.251608 AATTTGAAGGTCACCGGGGG 60.252 55.000 2.42 0.00 0.00 5.40
2321 2504 1.137594 ATTTGAAGGTCACCGGGGGA 61.138 55.000 2.42 0.00 0.00 4.81
2322 2505 1.774894 TTTGAAGGTCACCGGGGGAG 61.775 60.000 2.42 0.00 0.00 4.30
2323 2506 3.400054 GAAGGTCACCGGGGGAGG 61.400 72.222 2.42 0.00 37.30 4.30
2340 2523 4.748144 GGCAAGGCCCTCCACCTG 62.748 72.222 0.00 0.00 44.06 4.00
2341 2524 3.971702 GCAAGGCCCTCCACCTGT 61.972 66.667 0.00 0.00 37.67 4.00
2342 2525 2.602676 GCAAGGCCCTCCACCTGTA 61.603 63.158 0.00 0.00 37.67 2.74
2343 2526 2.074967 CAAGGCCCTCCACCTGTAA 58.925 57.895 0.00 0.00 37.67 2.41
2344 2527 0.404040 CAAGGCCCTCCACCTGTAAA 59.596 55.000 0.00 0.00 37.67 2.01
2345 2528 1.005924 CAAGGCCCTCCACCTGTAAAT 59.994 52.381 0.00 0.00 37.67 1.40
2359 2542 6.071391 CCACCTGTAAATTTTAATGTGAGCCT 60.071 38.462 0.00 0.00 0.00 4.58
2366 2549 5.841957 ATTTTAATGTGAGCCTGTGGATC 57.158 39.130 0.00 0.00 38.78 3.36
2830 3017 7.155328 TCAAGAGTGACAAGAAGGAAGATTAC 58.845 38.462 0.00 0.00 0.00 1.89
2933 3120 2.042259 CGCAAGCTTCATCCTGGCA 61.042 57.895 0.00 0.00 0.00 4.92
2989 3176 0.398098 TGGAGATCTACCGTTCCCCC 60.398 60.000 1.43 0.00 0.00 5.40
3174 3363 4.724279 TTTTAGAGGAAAAGGGCTCACT 57.276 40.909 0.00 0.00 31.90 3.41
3247 3436 5.014228 AGGTTTAGTGAAATACAAGCCCTCT 59.986 40.000 0.00 0.00 0.00 3.69
3265 3454 3.571401 CCTCTGAGGAAAACAGCAAACAT 59.429 43.478 19.13 0.00 37.67 2.71
3268 3457 2.053627 GAGGAAAACAGCAAACATGCG 58.946 47.619 0.00 0.00 40.27 4.73
3333 3522 7.362920 CCGAAAACAAGGAATTCTGACCAATAT 60.363 37.037 5.23 0.00 0.00 1.28
3368 3557 0.251209 GACCAAACTCTCCCCCAACC 60.251 60.000 0.00 0.00 0.00 3.77
3386 3575 2.967076 CACACACGAGCGCCAGTT 60.967 61.111 2.29 0.00 0.00 3.16
3458 3647 1.349026 TCCCAGCTTCAGAGGAAAGTG 59.651 52.381 0.00 0.00 31.35 3.16
3496 3685 3.077556 AGACAGTGCTAGCCGGGG 61.078 66.667 13.29 1.61 0.00 5.73
3658 3847 1.522806 GCCAGACCACAACACACGA 60.523 57.895 0.00 0.00 0.00 4.35
3682 3871 7.162546 CGATTGAAACACATGTCATTTCGATAC 59.837 37.037 23.25 17.97 36.84 2.24
3713 3902 0.885879 CCAAAGAGCTGCTGCATGAA 59.114 50.000 18.42 0.00 42.74 2.57
3780 3969 9.202273 GTTCATGAGTGATACCAAATCTAGATC 57.798 37.037 5.51 0.00 33.56 2.75
3827 4016 4.564782 AGCACTCTCCAGAATTCAATCA 57.435 40.909 8.44 0.00 0.00 2.57
3953 4144 9.145865 GTCAGGACTTAATTTATAGCTATCAGC 57.854 37.037 10.16 0.00 42.84 4.26
3970 4161 8.015840 AGCTATCAGCCAGAGAAAAATCTGAAA 61.016 37.037 5.32 0.00 45.30 2.69
4026 4217 2.972153 ATCAGTAGGAAGAACCCCCT 57.028 50.000 0.00 0.00 40.05 4.79
4027 4218 1.952621 TCAGTAGGAAGAACCCCCTG 58.047 55.000 0.00 0.00 40.05 4.45
4074 4265 4.582701 TTTGACAGTACAAATGCCCTTG 57.417 40.909 0.00 0.00 35.29 3.61
4108 4299 4.959596 CAGACAATGGAATCTTCACTGG 57.040 45.455 0.00 0.00 0.00 4.00
4157 4349 8.953368 ATATTGAAAAATCATTCCAAGCCTTC 57.047 30.769 0.00 0.00 0.00 3.46
4212 4404 3.806949 TTTTCAGGTGTAAGCCATCCT 57.193 42.857 0.00 0.00 32.25 3.24
4226 4418 4.712476 AGCCATCCTAGACTTTGCTAATG 58.288 43.478 0.00 0.00 0.00 1.90
4260 4452 9.407380 TGTGATCATTAGCAATAACATAAAGGT 57.593 29.630 0.00 0.00 0.00 3.50
4310 4502 3.312890 ACCTATCCACTGATCTTCCCAG 58.687 50.000 0.00 0.00 37.64 4.45
4327 4519 4.689062 TCCCAGAATCTAGTCCTCAAACT 58.311 43.478 0.00 0.00 0.00 2.66
4336 4528 6.313519 TCTAGTCCTCAAACTATTGCCAAT 57.686 37.500 0.00 0.00 36.45 3.16
4371 4563 3.006752 TCCAAATTTAGTGGCTTTGGCAG 59.993 43.478 8.39 0.00 45.49 4.85
4644 4867 8.970020 TCCAGAAATGACAATGCATATAAAGTT 58.030 29.630 0.00 0.00 0.00 2.66
4678 4901 6.434028 TCAAAGACACTTATTTTGGGATGGAG 59.566 38.462 0.00 0.00 33.70 3.86
5026 5261 0.521735 GGGTTAGTTCAAAGCTGCGG 59.478 55.000 0.00 0.00 0.00 5.69
5043 5278 2.036604 TGCGGCACTTATTATGGATCGA 59.963 45.455 0.00 0.00 0.00 3.59
5109 5344 4.181578 TGATACGGCAGCTACTTTCTTTC 58.818 43.478 0.00 0.00 0.00 2.62
5110 5345 1.809684 ACGGCAGCTACTTTCTTTCC 58.190 50.000 0.00 0.00 0.00 3.13
5350 5585 9.918630 CATTTCTTTGATCTTGAAAGTGGTATT 57.081 29.630 11.64 0.00 33.93 1.89
5375 5610 3.726557 ACATCCTCAAAGATTCTGGCA 57.273 42.857 0.00 0.00 0.00 4.92
5379 5614 5.482878 ACATCCTCAAAGATTCTGGCATTTT 59.517 36.000 0.00 0.00 0.00 1.82
5388 5623 2.099141 TCTGGCATTTTGGTCTCTCG 57.901 50.000 0.00 0.00 0.00 4.04
5421 5657 2.487934 GCTGTATGAGACGATGCCATT 58.512 47.619 0.00 0.00 0.00 3.16
5798 6035 3.290948 TGCCCACAACTTACTGAACTT 57.709 42.857 0.00 0.00 0.00 2.66
5955 6192 2.640826 ACACTTATTTTGGGACGGAGGA 59.359 45.455 0.00 0.00 0.00 3.71
6086 6323 5.482006 AGTGATTGGCTGGCTTTTATTTTC 58.518 37.500 2.00 0.00 0.00 2.29
6150 6387 6.882140 TCTGTTGATTCGCCCTCTTAAATAAA 59.118 34.615 0.00 0.00 0.00 1.40
6362 6600 7.085481 TGATCTCTTATATAGCGATCAGCCCA 61.085 42.308 12.74 0.00 45.52 5.36
6638 6985 8.722394 GGATGCTAAGGATAAAAATGTACTAGC 58.278 37.037 0.00 0.00 0.00 3.42
6727 7074 5.256474 TGAAAAGAATTCTCCCATGAGGTC 58.744 41.667 8.78 0.00 39.23 3.85
6849 7196 5.643379 TTTCCTCCAAAATGCATGTCTAC 57.357 39.130 0.00 0.00 0.00 2.59
6917 7265 4.515191 TGGTTTGACTGCTCTTGACATTAC 59.485 41.667 0.00 0.00 0.00 1.89
6931 7279 7.206981 CTTGACATTACAAGACATGTTTCCT 57.793 36.000 0.00 0.00 46.85 3.36
6932 7280 6.801539 TGACATTACAAGACATGTTTCCTC 57.198 37.500 0.00 0.00 43.63 3.71
6933 7281 6.533730 TGACATTACAAGACATGTTTCCTCT 58.466 36.000 0.00 0.00 43.63 3.69
6934 7282 6.998074 TGACATTACAAGACATGTTTCCTCTT 59.002 34.615 0.00 0.00 43.63 2.85
6935 7283 7.041167 TGACATTACAAGACATGTTTCCTCTTG 60.041 37.037 17.95 17.95 44.37 3.02
6936 7284 6.998074 ACATTACAAGACATGTTTCCTCTTGA 59.002 34.615 23.58 8.82 42.36 3.02
6937 7285 6.861065 TTACAAGACATGTTTCCTCTTGAC 57.139 37.500 23.58 0.00 42.36 3.18
6938 7286 4.780815 ACAAGACATGTTTCCTCTTGACA 58.219 39.130 23.58 0.00 42.36 3.58
6939 7287 5.380043 ACAAGACATGTTTCCTCTTGACAT 58.620 37.500 23.58 5.87 42.36 3.06
6940 7288 5.829924 ACAAGACATGTTTCCTCTTGACATT 59.170 36.000 23.58 5.59 42.36 2.71
6941 7289 6.998074 ACAAGACATGTTTCCTCTTGACATTA 59.002 34.615 23.58 0.00 42.36 1.90
6942 7290 7.041098 ACAAGACATGTTTCCTCTTGACATTAC 60.041 37.037 23.58 0.00 42.36 1.89
6943 7291 6.533730 AGACATGTTTCCTCTTGACATTACA 58.466 36.000 0.00 0.00 32.01 2.41
6944 7292 6.998074 AGACATGTTTCCTCTTGACATTACAA 59.002 34.615 0.00 0.00 32.01 2.41
6945 7293 7.173907 AGACATGTTTCCTCTTGACATTACAAG 59.826 37.037 0.00 0.00 45.73 3.16
6966 7314 1.269012 CATGTTTTGCCACCCTCCAT 58.731 50.000 0.00 0.00 0.00 3.41
6967 7315 1.205417 CATGTTTTGCCACCCTCCATC 59.795 52.381 0.00 0.00 0.00 3.51
6968 7316 0.187117 TGTTTTGCCACCCTCCATCA 59.813 50.000 0.00 0.00 0.00 3.07
6969 7317 0.890683 GTTTTGCCACCCTCCATCAG 59.109 55.000 0.00 0.00 0.00 2.90
6971 7319 0.251297 TTTGCCACCCTCCATCAGTG 60.251 55.000 0.00 0.00 0.00 3.66
6973 7321 2.273449 CCACCCTCCATCAGTGGC 59.727 66.667 0.00 0.00 44.21 5.01
6974 7322 2.124983 CACCCTCCATCAGTGGCG 60.125 66.667 0.00 0.00 45.63 5.69
6978 7326 4.766970 CTCCATCAGTGGCGGATC 57.233 61.111 2.37 0.00 45.63 3.36
6979 7327 2.131405 CTCCATCAGTGGCGGATCT 58.869 57.895 2.37 0.00 45.63 2.75
6980 7328 1.332195 CTCCATCAGTGGCGGATCTA 58.668 55.000 2.37 0.00 45.63 1.98
6981 7329 1.271934 CTCCATCAGTGGCGGATCTAG 59.728 57.143 2.37 0.00 45.63 2.43
6982 7330 0.319728 CCATCAGTGGCGGATCTAGG 59.680 60.000 0.00 0.00 39.01 3.02
6983 7331 1.332195 CATCAGTGGCGGATCTAGGA 58.668 55.000 0.00 0.00 0.00 2.94
6984 7332 1.898472 CATCAGTGGCGGATCTAGGAT 59.102 52.381 0.00 0.00 0.00 3.24
6985 7333 1.621992 TCAGTGGCGGATCTAGGATC 58.378 55.000 0.00 0.00 0.00 3.36
6986 7334 1.133482 TCAGTGGCGGATCTAGGATCA 60.133 52.381 9.33 0.00 0.00 2.92
6987 7335 1.898472 CAGTGGCGGATCTAGGATCAT 59.102 52.381 9.33 0.00 0.00 2.45
6988 7336 3.092301 CAGTGGCGGATCTAGGATCATA 58.908 50.000 9.33 0.00 0.00 2.15
6989 7337 3.511540 CAGTGGCGGATCTAGGATCATAA 59.488 47.826 9.33 0.00 0.00 1.90
6990 7338 4.021104 CAGTGGCGGATCTAGGATCATAAA 60.021 45.833 9.33 0.00 0.00 1.40
6991 7339 4.593206 AGTGGCGGATCTAGGATCATAAAA 59.407 41.667 9.33 0.00 0.00 1.52
6992 7340 4.932200 GTGGCGGATCTAGGATCATAAAAG 59.068 45.833 9.33 0.00 0.00 2.27
6993 7341 4.593206 TGGCGGATCTAGGATCATAAAAGT 59.407 41.667 9.33 0.00 0.00 2.66
6994 7342 4.932200 GGCGGATCTAGGATCATAAAAGTG 59.068 45.833 9.33 0.00 0.00 3.16
6995 7343 4.932200 GCGGATCTAGGATCATAAAAGTGG 59.068 45.833 9.33 0.00 0.00 4.00
6996 7344 5.511545 GCGGATCTAGGATCATAAAAGTGGT 60.512 44.000 9.33 0.00 0.00 4.16
6999 7347 7.283329 GGATCTAGGATCATAAAAGTGGTTGT 58.717 38.462 9.33 0.00 0.00 3.32
7000 7348 7.227512 GGATCTAGGATCATAAAAGTGGTTGTG 59.772 40.741 9.33 0.00 0.00 3.33
7001 7349 5.880332 TCTAGGATCATAAAAGTGGTTGTGC 59.120 40.000 0.00 0.00 0.00 4.57
7002 7350 3.763897 AGGATCATAAAAGTGGTTGTGCC 59.236 43.478 0.00 0.00 37.90 5.01
7003 7351 3.509575 GGATCATAAAAGTGGTTGTGCCA 59.490 43.478 0.00 0.00 46.95 4.92
7015 7363 5.991933 TGGTTGTGCCACAATTTATATGT 57.008 34.783 14.22 0.00 43.61 2.29
7016 7364 5.960113 TGGTTGTGCCACAATTTATATGTC 58.040 37.500 14.22 0.00 43.61 3.06
7017 7365 5.478332 TGGTTGTGCCACAATTTATATGTCA 59.522 36.000 14.22 0.00 43.61 3.58
7018 7366 6.015095 TGGTTGTGCCACAATTTATATGTCAA 60.015 34.615 14.22 0.00 43.61 3.18
7022 7370 8.286191 TGTGCCACAATTTATATGTCAATGTA 57.714 30.769 0.00 0.00 0.00 2.29
7023 7371 8.911965 TGTGCCACAATTTATATGTCAATGTAT 58.088 29.630 0.00 0.00 0.00 2.29
7025 7373 9.129532 TGCCACAATTTATATGTCAATGTATGA 57.870 29.630 0.00 0.00 35.05 2.15
7039 8062 9.612066 TGTCAATGTATGAATAGCATAAGTTCA 57.388 29.630 0.00 0.00 40.97 3.18
7094 8117 9.472361 CTACACTACAAGTAGTATTTTGTGTGT 57.528 33.333 22.88 22.88 43.98 3.72
7095 8118 8.138365 ACACTACAAGTAGTATTTTGTGTGTG 57.862 34.615 21.13 20.88 43.98 3.82
7096 8119 7.767198 ACACTACAAGTAGTATTTTGTGTGTGT 59.233 33.333 21.33 21.33 43.98 3.72
7097 8120 9.251792 CACTACAAGTAGTATTTTGTGTGTGTA 57.748 33.333 12.17 0.00 43.98 2.90
7098 8121 9.820725 ACTACAAGTAGTATTTTGTGTGTGTAA 57.179 29.630 10.97 0.00 43.98 2.41
7101 8124 9.944663 ACAAGTAGTATTTTGTGTGTGTAAATG 57.055 29.630 3.12 0.00 36.26 2.32
7102 8125 9.944663 CAAGTAGTATTTTGTGTGTGTAAATGT 57.055 29.630 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 5.509771 CACAACAAAAGTCATCGACATTCA 58.490 37.500 0.00 0.00 34.60 2.57
27 28 4.350346 TGAAAGCACAACAAAAGTCATCG 58.650 39.130 0.00 0.00 0.00 3.84
100 101 8.239314 GCATCAAATGACTGACAAGAGATTAAA 58.761 33.333 0.00 0.00 0.00 1.52
101 102 7.609146 AGCATCAAATGACTGACAAGAGATTAA 59.391 33.333 0.00 0.00 0.00 1.40
102 103 7.065443 CAGCATCAAATGACTGACAAGAGATTA 59.935 37.037 5.84 0.00 36.90 1.75
103 104 5.944599 AGCATCAAATGACTGACAAGAGATT 59.055 36.000 0.00 0.00 0.00 2.40
104 105 5.354513 CAGCATCAAATGACTGACAAGAGAT 59.645 40.000 5.84 0.00 36.90 2.75
105 106 4.694037 CAGCATCAAATGACTGACAAGAGA 59.306 41.667 5.84 0.00 36.90 3.10
106 107 4.672024 GCAGCATCAAATGACTGACAAGAG 60.672 45.833 12.45 0.00 36.90 2.85
107 108 3.189910 GCAGCATCAAATGACTGACAAGA 59.810 43.478 12.45 0.00 36.90 3.02
108 109 3.057806 TGCAGCATCAAATGACTGACAAG 60.058 43.478 12.45 0.00 36.90 3.16
109 110 2.885894 TGCAGCATCAAATGACTGACAA 59.114 40.909 12.45 0.21 36.90 3.18
110 111 2.506444 TGCAGCATCAAATGACTGACA 58.494 42.857 12.45 8.60 36.90 3.58
111 112 3.692576 GATGCAGCATCAAATGACTGAC 58.307 45.455 27.61 0.00 40.28 3.51
112 113 2.353579 CGATGCAGCATCAAATGACTGA 59.646 45.455 30.49 0.00 40.54 3.41
113 114 2.096980 ACGATGCAGCATCAAATGACTG 59.903 45.455 30.49 16.26 40.54 3.51
114 115 2.362736 ACGATGCAGCATCAAATGACT 58.637 42.857 30.49 0.00 40.54 3.41
115 116 2.838386 ACGATGCAGCATCAAATGAC 57.162 45.000 30.49 7.02 40.54 3.06
116 117 3.011818 AGAACGATGCAGCATCAAATGA 58.988 40.909 30.49 0.00 40.54 2.57
117 118 3.105937 CAGAACGATGCAGCATCAAATG 58.894 45.455 30.49 19.87 40.54 2.32
118 119 2.751259 ACAGAACGATGCAGCATCAAAT 59.249 40.909 30.49 17.82 40.54 2.32
119 120 2.153645 ACAGAACGATGCAGCATCAAA 58.846 42.857 30.49 0.00 40.54 2.69
120 121 1.812235 ACAGAACGATGCAGCATCAA 58.188 45.000 30.49 0.00 40.54 2.57
218 240 8.066612 AGAATCTCTTCACACAAAAGGAAAAA 57.933 30.769 0.00 0.00 33.56 1.94
328 350 0.102481 AGTTGACTGTCAGCGTCGTT 59.898 50.000 17.14 0.00 32.57 3.85
335 357 5.679734 ATTTTAGTGCAGTTGACTGTCAG 57.320 39.130 10.77 0.00 45.45 3.51
381 403 5.968528 TTGGCTAAATGTGAACCGTAATT 57.031 34.783 0.00 0.00 0.00 1.40
386 408 4.739716 GCATTATTGGCTAAATGTGAACCG 59.260 41.667 0.00 0.00 35.86 4.44
387 409 4.739716 CGCATTATTGGCTAAATGTGAACC 59.260 41.667 12.23 0.00 43.17 3.62
388 410 4.207019 GCGCATTATTGGCTAAATGTGAAC 59.793 41.667 18.21 4.65 43.17 3.18
482 525 6.312918 TGTCATACTGGAAACTAGAAAATCGC 59.687 38.462 0.00 0.00 0.00 4.58
600 704 2.034221 GGCTTTGGGCGAAGAGGT 59.966 61.111 3.74 0.00 42.94 3.85
655 763 2.026636 TCACCTATTTTGGAACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
656 764 3.007635 GTCACCTATTTTGGAACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
657 765 3.007635 GGTCACCTATTTTGGAACGGAG 58.992 50.000 0.00 0.00 0.00 4.63
658 766 2.290450 GGGTCACCTATTTTGGAACGGA 60.290 50.000 0.00 0.00 0.00 4.69
659 767 2.089201 GGGTCACCTATTTTGGAACGG 58.911 52.381 0.00 0.00 0.00 4.44
660 768 2.785562 TGGGTCACCTATTTTGGAACG 58.214 47.619 0.00 0.00 37.76 3.95
661 769 4.081697 CCATTGGGTCACCTATTTTGGAAC 60.082 45.833 0.00 0.00 37.76 3.62
662 770 4.093011 CCATTGGGTCACCTATTTTGGAA 58.907 43.478 0.00 0.00 37.76 3.53
663 771 3.565449 CCCATTGGGTCACCTATTTTGGA 60.565 47.826 14.10 0.00 38.25 3.53
664 772 2.765699 CCCATTGGGTCACCTATTTTGG 59.234 50.000 14.10 0.00 38.25 3.28
678 786 3.707316 TCCAAAATAGGTGACCCATTGG 58.293 45.455 15.22 15.22 35.49 3.16
679 787 4.380444 CGTTCCAAAATAGGTGACCCATTG 60.380 45.833 0.00 0.00 0.00 2.82
680 788 3.761752 CGTTCCAAAATAGGTGACCCATT 59.238 43.478 0.00 0.00 0.00 3.16
681 789 3.352648 CGTTCCAAAATAGGTGACCCAT 58.647 45.455 0.00 0.00 0.00 4.00
682 790 2.553466 CCGTTCCAAAATAGGTGACCCA 60.553 50.000 0.00 0.00 0.00 4.51
683 791 2.089201 CCGTTCCAAAATAGGTGACCC 58.911 52.381 0.00 0.00 0.00 4.46
684 792 3.007635 CTCCGTTCCAAAATAGGTGACC 58.992 50.000 0.00 0.00 0.00 4.02
685 793 3.007635 CCTCCGTTCCAAAATAGGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
686 794 2.026636 CCCTCCGTTCCAAAATAGGTGA 60.027 50.000 0.00 0.00 0.00 4.02
687 795 2.026636 TCCCTCCGTTCCAAAATAGGTG 60.027 50.000 0.00 0.00 0.00 4.00
688 796 2.238898 CTCCCTCCGTTCCAAAATAGGT 59.761 50.000 0.00 0.00 0.00 3.08
689 797 2.238898 ACTCCCTCCGTTCCAAAATAGG 59.761 50.000 0.00 0.00 0.00 2.57
690 798 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
691 799 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
692 800 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
693 801 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
694 802 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
695 803 1.946984 ATGTACTCCCTCCGTTCCAA 58.053 50.000 0.00 0.00 0.00 3.53
696 804 2.832643 TATGTACTCCCTCCGTTCCA 57.167 50.000 0.00 0.00 0.00 3.53
697 805 4.684484 AAATATGTACTCCCTCCGTTCC 57.316 45.455 0.00 0.00 0.00 3.62
698 806 4.743644 CGAAAATATGTACTCCCTCCGTTC 59.256 45.833 0.00 0.00 0.00 3.95
699 807 4.161001 ACGAAAATATGTACTCCCTCCGTT 59.839 41.667 0.00 0.00 0.00 4.44
700 808 3.703052 ACGAAAATATGTACTCCCTCCGT 59.297 43.478 0.00 0.00 0.00 4.69
701 809 4.317671 ACGAAAATATGTACTCCCTCCG 57.682 45.455 0.00 0.00 0.00 4.63
702 810 5.009010 TCGTACGAAAATATGTACTCCCTCC 59.991 44.000 17.11 0.00 38.99 4.30
703 811 6.064846 TCGTACGAAAATATGTACTCCCTC 57.935 41.667 17.11 0.00 38.99 4.30
704 812 6.263842 TGATCGTACGAAAATATGTACTCCCT 59.736 38.462 23.56 0.00 38.99 4.20
705 813 6.361748 GTGATCGTACGAAAATATGTACTCCC 59.638 42.308 23.56 0.00 38.99 4.30
706 814 6.085979 CGTGATCGTACGAAAATATGTACTCC 59.914 42.308 23.56 4.70 46.46 3.85
707 815 6.397274 GCGTGATCGTACGAAAATATGTACTC 60.397 42.308 23.56 11.35 46.46 2.59
708 816 5.397534 GCGTGATCGTACGAAAATATGTACT 59.602 40.000 23.56 0.52 46.46 2.73
709 817 5.397534 AGCGTGATCGTACGAAAATATGTAC 59.602 40.000 23.56 10.84 46.46 2.90
710 818 5.513376 AGCGTGATCGTACGAAAATATGTA 58.487 37.500 23.56 0.00 46.46 2.29
807 915 4.332819 CCTCCGTTGAAACAAGATCATACC 59.667 45.833 0.00 0.00 0.00 2.73
825 933 0.464735 ACTCTCTGATCGACCCTCCG 60.465 60.000 0.00 0.00 0.00 4.63
831 939 0.651551 ACGCGTACTCTCTGATCGAC 59.348 55.000 11.67 0.00 0.00 4.20
1851 2020 9.507329 AGTAAATCAGCGACATTAATATGGATT 57.493 29.630 0.00 0.00 36.01 3.01
1934 2117 5.390567 GGTCCATATTAATTGTCGCCGATTC 60.391 44.000 0.00 0.00 0.00 2.52
1939 2122 2.482721 CCGGTCCATATTAATTGTCGCC 59.517 50.000 0.00 0.00 0.00 5.54
1957 2140 7.341445 TGATTTAATACAAATTTCCCTCCGG 57.659 36.000 0.00 0.00 0.00 5.14
2124 2307 8.607441 TTAATGTATCATATCTGTTCCAGTGC 57.393 34.615 0.00 0.00 32.61 4.40
2222 2405 4.204012 TGCCAGTACAAGTTTTGCTACTT 58.796 39.130 0.00 0.00 38.87 2.24
2241 2424 3.141409 TCCCCAAAGGAAAGTTGCC 57.859 52.632 0.00 0.00 43.78 4.52
2264 2447 9.717942 GATATTCATTTCTGGTAGAGCTGTAAT 57.282 33.333 0.00 0.00 0.00 1.89
2298 2481 2.367241 CCCCGGTGACCTTCAAATTTTT 59.633 45.455 0.00 0.00 0.00 1.94
2299 2482 1.967779 CCCCGGTGACCTTCAAATTTT 59.032 47.619 0.00 0.00 0.00 1.82
2300 2483 1.627864 CCCCGGTGACCTTCAAATTT 58.372 50.000 0.00 0.00 0.00 1.82
2301 2484 0.251608 CCCCCGGTGACCTTCAAATT 60.252 55.000 0.00 0.00 0.00 1.82
2302 2485 1.137594 TCCCCCGGTGACCTTCAAAT 61.138 55.000 0.00 0.00 0.00 2.32
2303 2486 1.770927 TCCCCCGGTGACCTTCAAA 60.771 57.895 0.00 0.00 0.00 2.69
2304 2487 2.122324 TCCCCCGGTGACCTTCAA 60.122 61.111 0.00 0.00 0.00 2.69
2305 2488 2.606519 CTCCCCCGGTGACCTTCA 60.607 66.667 0.00 0.00 0.00 3.02
2306 2489 3.400054 CCTCCCCCGGTGACCTTC 61.400 72.222 0.00 0.00 0.00 3.46
2324 2507 2.137177 TTACAGGTGGAGGGCCTTGC 62.137 60.000 7.89 0.00 33.31 4.01
2325 2508 0.404040 TTTACAGGTGGAGGGCCTTG 59.596 55.000 7.89 3.59 33.31 3.61
2326 2509 1.382914 ATTTACAGGTGGAGGGCCTT 58.617 50.000 7.89 0.00 33.31 4.35
2327 2510 1.382914 AATTTACAGGTGGAGGGCCT 58.617 50.000 5.25 5.25 36.66 5.19
2328 2511 2.231716 AAATTTACAGGTGGAGGGCC 57.768 50.000 0.00 0.00 0.00 5.80
2329 2512 5.186992 ACATTAAAATTTACAGGTGGAGGGC 59.813 40.000 0.00 0.00 0.00 5.19
2330 2513 6.435904 TCACATTAAAATTTACAGGTGGAGGG 59.564 38.462 12.05 0.00 0.00 4.30
2331 2514 7.461182 TCACATTAAAATTTACAGGTGGAGG 57.539 36.000 12.05 0.00 0.00 4.30
2332 2515 7.029563 GCTCACATTAAAATTTACAGGTGGAG 58.970 38.462 12.05 9.83 0.00 3.86
2333 2516 6.071616 GGCTCACATTAAAATTTACAGGTGGA 60.072 38.462 12.05 2.54 0.00 4.02
2334 2517 6.071391 AGGCTCACATTAAAATTTACAGGTGG 60.071 38.462 12.05 6.51 0.00 4.61
2335 2518 6.808212 CAGGCTCACATTAAAATTTACAGGTG 59.192 38.462 7.63 7.63 0.00 4.00
2336 2519 6.493458 ACAGGCTCACATTAAAATTTACAGGT 59.507 34.615 0.00 0.00 0.00 4.00
2337 2520 6.808212 CACAGGCTCACATTAAAATTTACAGG 59.192 38.462 0.00 0.00 0.00 4.00
2338 2521 6.808212 CCACAGGCTCACATTAAAATTTACAG 59.192 38.462 0.00 0.00 0.00 2.74
2339 2522 6.491745 TCCACAGGCTCACATTAAAATTTACA 59.508 34.615 0.00 0.00 0.00 2.41
2340 2523 6.919721 TCCACAGGCTCACATTAAAATTTAC 58.080 36.000 0.00 0.00 0.00 2.01
2341 2524 7.615365 AGATCCACAGGCTCACATTAAAATTTA 59.385 33.333 0.00 0.00 0.00 1.40
2342 2525 6.438425 AGATCCACAGGCTCACATTAAAATTT 59.562 34.615 0.00 0.00 0.00 1.82
2343 2526 5.954150 AGATCCACAGGCTCACATTAAAATT 59.046 36.000 0.00 0.00 0.00 1.82
2344 2527 5.513233 AGATCCACAGGCTCACATTAAAAT 58.487 37.500 0.00 0.00 0.00 1.82
2345 2528 4.922206 AGATCCACAGGCTCACATTAAAA 58.078 39.130 0.00 0.00 0.00 1.52
2359 2542 5.105716 GCTCTACAGTAGTTGAAGATCCACA 60.106 44.000 7.50 0.00 0.00 4.17
2366 2549 3.217599 TGCGCTCTACAGTAGTTGAAG 57.782 47.619 9.73 0.00 0.00 3.02
2707 2893 7.040478 CCAATCAACTCCTGTAAATGAACTCAA 60.040 37.037 0.00 0.00 0.00 3.02
2989 3176 2.504367 AGGGACTCACCAAATTGTTCG 58.496 47.619 0.00 0.00 41.20 3.95
3095 3282 5.546110 TCCCTCCGATCCATATTAATTGTCA 59.454 40.000 0.00 0.00 0.00 3.58
3174 3363 1.932156 AATACAATGGAGCCGGGGCA 61.932 55.000 12.97 0.00 44.88 5.36
3247 3436 3.096489 GCATGTTTGCTGTTTTCCTCA 57.904 42.857 0.00 0.00 45.77 3.86
3265 3454 1.451927 CCTATTTGCTGAGGCCGCA 60.452 57.895 9.48 9.48 37.74 5.69
3268 3457 2.027385 CTTTCCCTATTTGCTGAGGCC 58.973 52.381 0.00 0.00 37.74 5.19
3333 3522 5.304614 AGTTTGGTCAGAGCTGTAGTTCTTA 59.695 40.000 0.00 0.00 33.18 2.10
3368 3557 4.969196 ACTGGCGCTCGTGTGTGG 62.969 66.667 7.64 0.00 0.00 4.17
3383 3572 1.992557 TGGCTACTCCAAATCCCAACT 59.007 47.619 0.00 0.00 43.21 3.16
3496 3685 3.054503 CTGCTGCTGTGGCCAGAC 61.055 66.667 5.11 0.00 41.50 3.51
3658 3847 8.044060 AGTATCGAAATGACATGTGTTTCAAT 57.956 30.769 22.93 16.81 32.75 2.57
3682 3871 0.034670 CTCTTTGGGCCCTCTGGAAG 60.035 60.000 25.70 17.70 0.00 3.46
3713 3902 8.511604 AACACTAAAACTGCTGATATTATGCT 57.488 30.769 0.00 0.00 0.00 3.79
3780 3969 4.698780 CAGATATCACTGGGTATGCCAATG 59.301 45.833 5.32 0.00 36.17 2.82
3899 4090 7.339482 GGGATAACCTACAGAAAAGACAGAAT 58.661 38.462 0.00 0.00 35.85 2.40
3937 4128 9.632638 TTTTTCTCTGGCTGATAGCTATAAATT 57.367 29.630 6.13 0.00 41.99 1.82
3939 4130 9.277783 GATTTTTCTCTGGCTGATAGCTATAAA 57.722 33.333 6.13 0.00 41.99 1.40
3942 4133 6.935771 CAGATTTTTCTCTGGCTGATAGCTAT 59.064 38.462 5.76 5.76 41.99 2.97
3953 4144 5.126707 CCCCAGATTTCAGATTTTTCTCTGG 59.873 44.000 8.40 8.40 45.04 3.86
4063 4254 5.452356 GGAATTATGACTCCAAGGGCATTTG 60.452 44.000 0.00 0.00 0.00 2.32
4139 4330 6.555463 ATGATGAAGGCTTGGAATGATTTT 57.445 33.333 3.46 0.00 0.00 1.82
4191 4383 4.322057 AGGATGGCTTACACCTGAAAAT 57.678 40.909 0.00 0.00 31.94 1.82
4193 4385 4.081087 GTCTAGGATGGCTTACACCTGAAA 60.081 45.833 0.00 0.00 34.11 2.69
4198 4390 4.192317 CAAAGTCTAGGATGGCTTACACC 58.808 47.826 0.00 0.00 0.00 4.16
4212 4404 7.446931 TCACAATGTTTCCATTAGCAAAGTCTA 59.553 33.333 0.00 0.00 39.28 2.59
4226 4418 9.023967 GTTATTGCTAATGATCACAATGTTTCC 57.976 33.333 15.81 1.08 34.69 3.13
4260 4452 5.514500 ACCTTAGCTACTCAATTTTGGGA 57.486 39.130 0.00 0.00 31.59 4.37
4310 4502 6.349300 TGGCAATAGTTTGAGGACTAGATTC 58.651 40.000 0.00 0.00 35.72 2.52
4327 4519 5.221925 GGATACTCCTGGAAGATTGGCAATA 60.222 44.000 13.65 0.00 34.07 1.90
4336 4528 7.338710 CACTAAATTTGGATACTCCTGGAAGA 58.661 38.462 8.72 0.00 37.46 2.87
4371 4563 1.347062 TGGAAAGGGATTTTGTGGGC 58.653 50.000 0.00 0.00 0.00 5.36
4397 4589 4.870991 GCTAGTTCTTCTATTGGTGTGTCC 59.129 45.833 0.00 0.00 0.00 4.02
4678 4901 3.971971 ACACACCCCTATTATGTACTCCC 59.028 47.826 0.00 0.00 0.00 4.30
4802 5026 4.693283 ACAACGATGACACTTCTGAAAGA 58.307 39.130 0.00 0.00 44.68 2.52
4803 5027 6.019075 TGTTACAACGATGACACTTCTGAAAG 60.019 38.462 0.00 0.00 38.54 2.62
4804 5028 5.813157 TGTTACAACGATGACACTTCTGAAA 59.187 36.000 0.00 0.00 0.00 2.69
4805 5029 5.353111 TGTTACAACGATGACACTTCTGAA 58.647 37.500 0.00 0.00 0.00 3.02
4806 5030 4.939271 TGTTACAACGATGACACTTCTGA 58.061 39.130 0.00 0.00 0.00 3.27
4807 5031 5.405269 TGATGTTACAACGATGACACTTCTG 59.595 40.000 0.00 0.00 0.00 3.02
4808 5032 5.538118 TGATGTTACAACGATGACACTTCT 58.462 37.500 0.00 0.00 0.00 2.85
4809 5033 5.839262 TGATGTTACAACGATGACACTTC 57.161 39.130 0.00 4.23 0.00 3.01
4810 5034 5.758296 ACTTGATGTTACAACGATGACACTT 59.242 36.000 0.00 0.00 0.00 3.16
4811 5035 5.297547 ACTTGATGTTACAACGATGACACT 58.702 37.500 0.00 0.00 0.00 3.55
4812 5036 5.591643 ACTTGATGTTACAACGATGACAC 57.408 39.130 0.00 0.00 0.00 3.67
4813 5037 6.217294 TGTACTTGATGTTACAACGATGACA 58.783 36.000 0.00 0.00 0.00 3.58
4814 5038 6.699895 TGTACTTGATGTTACAACGATGAC 57.300 37.500 0.00 0.00 0.00 3.06
4815 5039 7.112528 GTTGTACTTGATGTTACAACGATGA 57.887 36.000 0.00 0.00 41.53 2.92
4955 5179 4.999310 TCGGAGGGAGTACATATCAATCT 58.001 43.478 0.00 0.00 0.00 2.40
5020 5244 1.593196 TCCATAATAAGTGCCGCAGC 58.407 50.000 0.00 0.00 40.48 5.25
5026 5261 6.456501 ACTACCTTCGATCCATAATAAGTGC 58.543 40.000 0.00 0.00 0.00 4.40
5043 5278 9.959721 AAGTGATGTCATGTTTAATACTACCTT 57.040 29.630 0.00 0.00 0.00 3.50
5071 5306 5.745514 CCGTATCAAATCTGAAGCTCAATG 58.254 41.667 0.00 0.00 34.49 2.82
5109 5344 5.689383 TCCTGTCAGATTTTCGAAAAAGG 57.311 39.130 25.77 23.84 0.00 3.11
5110 5345 5.149977 GCTCCTGTCAGATTTTCGAAAAAG 58.850 41.667 25.77 16.88 0.00 2.27
5192 5427 7.255836 GGTTTGGCCTGATCTAAGTTACTTTTT 60.256 37.037 3.32 0.00 0.00 1.94
5193 5428 6.208797 GGTTTGGCCTGATCTAAGTTACTTTT 59.791 38.462 3.32 0.00 0.00 2.27
5194 5429 5.710567 GGTTTGGCCTGATCTAAGTTACTTT 59.289 40.000 3.32 0.00 0.00 2.66
5195 5430 5.254115 GGTTTGGCCTGATCTAAGTTACTT 58.746 41.667 3.32 2.32 0.00 2.24
5196 5431 4.324331 GGGTTTGGCCTGATCTAAGTTACT 60.324 45.833 3.32 0.00 37.43 2.24
5197 5432 3.945921 GGGTTTGGCCTGATCTAAGTTAC 59.054 47.826 3.32 0.00 37.43 2.50
5350 5585 5.188434 CCAGAATCTTTGAGGATGTTAGCA 58.812 41.667 0.00 0.00 0.00 3.49
5375 5610 3.826157 TGGCAAATTCGAGAGACCAAAAT 59.174 39.130 0.00 0.00 41.84 1.82
5379 5614 2.426522 CTTGGCAAATTCGAGAGACCA 58.573 47.619 0.00 0.00 41.84 4.02
5421 5657 2.957402 AGCATCCAGGAAGTGTTTCA 57.043 45.000 0.00 0.00 34.90 2.69
5561 5798 0.622136 ATGCTGCTGAAGGGTGATCA 59.378 50.000 0.00 0.00 0.00 2.92
5798 6035 3.334691 CTTGTATTCAACGGAAGAGCCA 58.665 45.455 0.00 0.00 36.25 4.75
5871 6108 5.182001 CCTTGAGACACTTATTTTGGGACAG 59.818 44.000 0.00 0.00 42.39 3.51
5941 6178 5.502089 TTAATACTTCCTCCGTCCCAAAA 57.498 39.130 0.00 0.00 0.00 2.44
6086 6323 7.662604 AACCTGTACTATAAAAAGTGAACGG 57.337 36.000 0.00 0.00 0.00 4.44
6103 6340 9.344772 ACAGAACAACAATGTATAAAACCTGTA 57.655 29.630 0.00 0.00 39.40 2.74
6358 6596 2.634815 ATGTGATGTGAGATCTGGGC 57.365 50.000 0.00 0.00 0.00 5.36
6362 6600 5.189342 ACTGGAAGAATGTGATGTGAGATCT 59.811 40.000 0.00 0.00 37.43 2.75
6451 6689 2.939460 ACACAACTCAACACAAAGGC 57.061 45.000 0.00 0.00 0.00 4.35
6579 6817 6.258287 TCTCCTCAACAAATCGTTCGTTTTTA 59.742 34.615 0.00 0.00 34.86 1.52
6587 6825 4.911390 AGGATTCTCCTCAACAAATCGTT 58.089 39.130 0.00 0.00 45.66 3.85
6727 7074 3.152341 AGGAAACCAAACATGAGCTCTG 58.848 45.455 16.19 12.83 0.00 3.35
6772 7119 5.452078 TGTTCAAGGAATTTCACATGGTC 57.548 39.130 0.00 0.00 0.00 4.02
6849 7196 9.381033 CTCATATATGGAGAATTAGGAAGCAAG 57.619 37.037 12.78 0.00 34.24 4.01
6885 7232 6.798427 AGAGCAGTCAAACCATCTATCTAA 57.202 37.500 0.00 0.00 0.00 2.10
6889 7236 5.181748 GTCAAGAGCAGTCAAACCATCTAT 58.818 41.667 0.00 0.00 0.00 1.98
6917 7265 5.954296 ATGTCAAGAGGAAACATGTCTTG 57.046 39.130 14.87 14.87 45.74 3.02
6932 7280 6.144402 GGCAAAACATGTCTTGTAATGTCAAG 59.856 38.462 13.26 0.00 44.08 3.02
6933 7281 5.982516 GGCAAAACATGTCTTGTAATGTCAA 59.017 36.000 13.26 0.00 37.68 3.18
6934 7282 5.068329 TGGCAAAACATGTCTTGTAATGTCA 59.932 36.000 13.26 3.77 37.68 3.58
6935 7283 5.402270 GTGGCAAAACATGTCTTGTAATGTC 59.598 40.000 13.26 1.41 37.68 3.06
6936 7284 5.288804 GTGGCAAAACATGTCTTGTAATGT 58.711 37.500 13.26 0.00 37.68 2.71
6937 7285 4.685628 GGTGGCAAAACATGTCTTGTAATG 59.314 41.667 13.26 0.51 37.68 1.90
6938 7286 4.262420 GGGTGGCAAAACATGTCTTGTAAT 60.262 41.667 13.26 0.00 37.68 1.89
6939 7287 3.068873 GGGTGGCAAAACATGTCTTGTAA 59.931 43.478 13.26 0.00 37.68 2.41
6940 7288 2.625790 GGGTGGCAAAACATGTCTTGTA 59.374 45.455 13.26 0.88 37.68 2.41
6941 7289 1.412343 GGGTGGCAAAACATGTCTTGT 59.588 47.619 13.26 0.00 41.53 3.16
6942 7290 1.688197 AGGGTGGCAAAACATGTCTTG 59.312 47.619 7.57 7.57 33.68 3.02
6943 7291 1.963515 GAGGGTGGCAAAACATGTCTT 59.036 47.619 0.00 0.00 33.68 3.01
6944 7292 1.620822 GAGGGTGGCAAAACATGTCT 58.379 50.000 0.00 0.00 33.68 3.41
6945 7293 0.603065 GGAGGGTGGCAAAACATGTC 59.397 55.000 0.00 0.00 0.00 3.06
6946 7294 0.105760 TGGAGGGTGGCAAAACATGT 60.106 50.000 0.00 0.00 0.00 3.21
6947 7295 1.205417 GATGGAGGGTGGCAAAACATG 59.795 52.381 0.00 0.00 0.00 3.21
6948 7296 1.203162 TGATGGAGGGTGGCAAAACAT 60.203 47.619 0.00 0.00 0.00 2.71
6949 7297 0.187117 TGATGGAGGGTGGCAAAACA 59.813 50.000 0.00 0.00 0.00 2.83
6950 7298 0.890683 CTGATGGAGGGTGGCAAAAC 59.109 55.000 0.00 0.00 0.00 2.43
6951 7299 0.482446 ACTGATGGAGGGTGGCAAAA 59.518 50.000 0.00 0.00 0.00 2.44
6952 7300 0.251297 CACTGATGGAGGGTGGCAAA 60.251 55.000 0.00 0.00 0.00 3.68
6953 7301 1.379916 CACTGATGGAGGGTGGCAA 59.620 57.895 0.00 0.00 0.00 4.52
6954 7302 3.080641 CACTGATGGAGGGTGGCA 58.919 61.111 0.00 0.00 0.00 4.92
6966 7314 1.133482 TGATCCTAGATCCGCCACTGA 60.133 52.381 2.29 0.00 0.00 3.41
6967 7315 1.332195 TGATCCTAGATCCGCCACTG 58.668 55.000 2.29 0.00 0.00 3.66
6968 7316 2.317371 ATGATCCTAGATCCGCCACT 57.683 50.000 2.29 0.00 0.00 4.00
6969 7317 4.537135 TTTATGATCCTAGATCCGCCAC 57.463 45.455 2.29 0.00 0.00 5.01
6971 7319 4.932200 CACTTTTATGATCCTAGATCCGCC 59.068 45.833 2.29 0.00 0.00 6.13
6972 7320 4.932200 CCACTTTTATGATCCTAGATCCGC 59.068 45.833 2.29 0.00 0.00 5.54
6973 7321 6.102897 ACCACTTTTATGATCCTAGATCCG 57.897 41.667 2.29 0.00 0.00 4.18
6974 7322 7.227512 CACAACCACTTTTATGATCCTAGATCC 59.772 40.741 2.29 0.00 0.00 3.36
6975 7323 7.254932 GCACAACCACTTTTATGATCCTAGATC 60.255 40.741 0.00 0.00 0.00 2.75
6976 7324 6.543831 GCACAACCACTTTTATGATCCTAGAT 59.456 38.462 0.00 0.00 0.00 1.98
6978 7326 5.066505 GGCACAACCACTTTTATGATCCTAG 59.933 44.000 0.00 0.00 38.86 3.02
6979 7327 4.947388 GGCACAACCACTTTTATGATCCTA 59.053 41.667 0.00 0.00 38.86 2.94
6980 7328 3.763897 GGCACAACCACTTTTATGATCCT 59.236 43.478 0.00 0.00 38.86 3.24
6981 7329 3.509575 TGGCACAACCACTTTTATGATCC 59.490 43.478 0.00 0.00 46.36 3.36
6982 7330 4.782019 TGGCACAACCACTTTTATGATC 57.218 40.909 0.00 0.00 46.36 2.92
6994 7342 5.960113 TGACATATAAATTGTGGCACAACC 58.040 37.500 33.26 14.40 44.16 3.77
6995 7343 7.545265 ACATTGACATATAAATTGTGGCACAAC 59.455 33.333 33.26 18.05 44.16 3.32
6996 7344 7.609960 ACATTGACATATAAATTGTGGCACAA 58.390 30.769 32.77 32.77 44.16 3.33
6999 7347 9.129532 TCATACATTGACATATAAATTGTGGCA 57.870 29.630 0.00 0.00 0.00 4.92
7000 7348 9.964303 TTCATACATTGACATATAAATTGTGGC 57.036 29.630 0.00 0.00 32.84 5.01
7013 7361 9.612066 TGAACTTATGCTATTCATACATTGACA 57.388 29.630 0.00 0.00 37.38 3.58
7069 8092 9.251792 CACACACAAAATACTACTTGTAGTGTA 57.748 33.333 20.02 5.07 41.01 2.90
7071 8094 8.138365 ACACACACAAAATACTACTTGTAGTG 57.862 34.615 20.02 11.42 41.58 2.74
7076 8099 9.944663 ACATTTACACACACAAAATACTACTTG 57.055 29.630 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.