Multiple sequence alignment - TraesCS3B01G264200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G264200 chr3B 100.000 4027 0 0 1 4027 423180705 423176679 0.000000e+00 7437
1 TraesCS3B01G264200 chr3B 83.182 220 35 2 503 720 18787258 18787039 2.450000e-47 200
2 TraesCS3B01G264200 chr3A 94.453 3263 150 15 133 3386 439457565 439460805 0.000000e+00 4994
3 TraesCS3B01G264200 chr3A 85.520 663 63 17 3394 4027 439464363 439465021 0.000000e+00 662
4 TraesCS3B01G264200 chr3A 78.630 365 43 15 1 331 231560351 231559988 4.080000e-50 209
5 TraesCS3B01G264200 chr3D 93.780 2315 100 21 1 2274 325709785 325707474 0.000000e+00 3437
6 TraesCS3B01G264200 chr3D 92.264 1758 95 25 2307 4027 325707477 325705724 0.000000e+00 2455
7 TraesCS3B01G264200 chr3D 80.978 368 38 19 5 342 266479362 266479727 3.090000e-66 263
8 TraesCS3B01G264200 chr3D 85.470 234 32 2 507 739 470732433 470732201 4.020000e-60 243
9 TraesCS3B01G264200 chr3D 85.520 221 23 6 133 344 54008059 54008279 5.240000e-54 222
10 TraesCS3B01G264200 chr3D 78.877 374 44 14 3 343 158525053 158525424 1.880000e-53 220
11 TraesCS3B01G264200 chr6D 81.452 372 35 10 3 342 186861426 186861795 1.430000e-69 274
12 TraesCS3B01G264200 chr6D 79.200 250 47 4 500 746 346562159 346562406 6.920000e-38 169
13 TraesCS3B01G264200 chr4D 87.983 233 27 1 507 738 281304100 281303868 1.430000e-69 274
14 TraesCS3B01G264200 chr2B 80.000 375 42 10 1 342 390238021 390237647 3.110000e-61 246
15 TraesCS3B01G264200 chr2B 79.679 374 38 12 1 343 390232534 390232168 6.730000e-58 235
16 TraesCS3B01G264200 chr2B 77.056 231 49 3 516 744 52898765 52898537 3.270000e-26 130
17 TraesCS3B01G264200 chr4B 79.630 378 41 15 3 347 395097224 395096850 5.200000e-59 239
18 TraesCS3B01G264200 chr4B 86.385 213 21 6 140 346 232827126 232826916 4.050000e-55 226
19 TraesCS3B01G264200 chr4B 85.780 218 23 8 133 342 273758110 273757893 1.460000e-54 224
20 TraesCS3B01G264200 chr1D 86.977 215 23 3 133 342 257511980 257511766 1.870000e-58 237
21 TraesCS3B01G264200 chr2D 87.204 211 20 7 140 343 187944844 187945054 2.420000e-57 233
22 TraesCS3B01G264200 chr2D 86.175 217 23 4 133 343 476867634 476867419 1.130000e-55 228
23 TraesCS3B01G264200 chr7A 86.239 218 23 4 133 343 565386292 565386075 3.130000e-56 230
24 TraesCS3B01G264200 chr6B 78.892 379 45 15 1 347 188742380 188742005 1.460000e-54 224
25 TraesCS3B01G264200 chr4A 77.322 366 47 14 4 342 221919416 221919060 2.470000e-42 183


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G264200 chr3B 423176679 423180705 4026 True 7437 7437 100.0000 1 4027 1 chr3B.!!$R2 4026
1 TraesCS3B01G264200 chr3A 439457565 439465021 7456 False 2828 4994 89.9865 133 4027 2 chr3A.!!$F1 3894
2 TraesCS3B01G264200 chr3D 325705724 325709785 4061 True 2946 3437 93.0220 1 4027 2 chr3D.!!$R2 4026

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 133 0.036858 GCCCTCTCTCCAAGTCACAC 60.037 60.0 0.0 0.0 0.0 3.82 F
1602 1640 0.031585 CGTCCAAGAACTCCACGTCA 59.968 55.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1936 1974 0.742281 CATGCAGAAGTGGGGACGAG 60.742 60.0 0.0 0.0 0.00 4.18 R
3289 3343 1.067295 TGTCCTGCCAGACCAATTCT 58.933 50.0 0.0 0.0 35.83 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 5.540719 AGAATATACAGAGGTGGAACTAGGC 59.459 44.000 0.00 0.00 36.74 3.93
40 41 1.562783 ACAGAGGTGGAACTAGGCTC 58.437 55.000 0.00 0.00 36.74 4.70
42 43 1.902508 CAGAGGTGGAACTAGGCTCAA 59.097 52.381 0.00 0.00 36.74 3.02
112 114 0.814457 CCTCCTCGTGACTCTTCTGG 59.186 60.000 0.00 0.00 0.00 3.86
130 132 1.194781 GGCCCTCTCTCCAAGTCACA 61.195 60.000 0.00 0.00 0.00 3.58
131 133 0.036858 GCCCTCTCTCCAAGTCACAC 60.037 60.000 0.00 0.00 0.00 3.82
147 173 7.592533 CCAAGTCACACTCATCATAAAGTTTTG 59.407 37.037 0.00 0.00 0.00 2.44
169 195 0.584876 CCGTTTGGACTCCGTTTGAC 59.415 55.000 0.00 0.00 37.49 3.18
174 200 3.485463 TTGGACTCCGTTTGACAATCT 57.515 42.857 0.00 0.00 0.00 2.40
186 212 8.410141 TCCGTTTGACAATCTTTTTCTGTAAAT 58.590 29.630 0.00 0.00 0.00 1.40
231 266 4.880164 ACACTGGGCTCTAGGTTAATAGA 58.120 43.478 0.00 0.00 0.00 1.98
355 390 6.620877 AGATGTATCAGACCCACTTAACAA 57.379 37.500 0.00 0.00 0.00 2.83
361 396 1.140252 AGACCCACTTAACAACAGCGT 59.860 47.619 0.00 0.00 0.00 5.07
391 426 3.311091 TCAACCCGCCCTACTATTACAT 58.689 45.455 0.00 0.00 0.00 2.29
436 471 3.951979 TCCGCGCTACTACTACTTAAC 57.048 47.619 5.56 0.00 0.00 2.01
460 495 2.951101 CGCGGACCACTTACCCCTT 61.951 63.158 0.00 0.00 0.00 3.95
552 587 5.810456 AGGGAGTTAAGAGGAGTAGGTAA 57.190 43.478 0.00 0.00 0.00 2.85
629 664 2.088423 CTATAGCCGCTCCGAGAGAAT 58.912 52.381 0.00 0.00 0.00 2.40
634 669 1.600912 GCCGCTCCGAGAGAATTACTC 60.601 57.143 0.00 0.00 45.22 2.59
669 704 2.100916 CTCGGTTCCACCTTGTATCGAT 59.899 50.000 2.16 2.16 35.66 3.59
692 727 0.888619 TTGTGGCCTCTCGACTGTAG 59.111 55.000 3.32 0.00 0.00 2.74
886 923 0.882042 CTCTCTGCACGTTGTTGGCT 60.882 55.000 0.00 0.00 0.00 4.75
1191 1229 1.080093 GTCGGACGCCTTCATCACA 60.080 57.895 0.00 0.00 0.00 3.58
1602 1640 0.031585 CGTCCAAGAACTCCACGTCA 59.968 55.000 0.00 0.00 0.00 4.35
1769 1807 9.629649 TCCTAGAACTGGAATATTATACCCAAT 57.370 33.333 0.00 0.00 0.00 3.16
1880 1918 5.549619 CCCCATAATTCTCCTAGACTTGGAT 59.450 44.000 6.08 0.00 32.56 3.41
1882 1920 7.421853 CCCCATAATTCTCCTAGACTTGGATTT 60.422 40.741 6.08 4.19 32.56 2.17
1883 1921 8.001292 CCCATAATTCTCCTAGACTTGGATTTT 58.999 37.037 6.08 3.88 32.56 1.82
1941 1979 0.025513 CTGCTGCGCATAAACTCGTC 59.974 55.000 12.24 0.00 38.13 4.20
2002 2040 2.614983 TCGTCGTGTCATCCGAATATCA 59.385 45.455 0.00 0.00 35.89 2.15
2019 2057 6.366061 CGAATATCAGACTGAAGTTGACAACA 59.634 38.462 20.08 0.00 0.00 3.33
2044 2082 3.252974 ACGCTCCTCATTTAAGACCAG 57.747 47.619 0.00 0.00 0.00 4.00
2205 2246 2.003301 GAGAGGCACGGAATCTGTTTC 58.997 52.381 0.00 0.00 0.00 2.78
2231 2272 7.043854 CGATTTTGGAACATCTGCATTTCATAC 60.044 37.037 0.00 0.00 39.30 2.39
2233 2274 6.441093 TTGGAACATCTGCATTTCATACTC 57.559 37.500 0.00 0.00 39.30 2.59
2234 2275 5.748402 TGGAACATCTGCATTTCATACTCT 58.252 37.500 0.00 0.00 0.00 3.24
2267 2308 0.395312 CCAAGGTGTTCACGGGTAGT 59.605 55.000 0.00 0.00 0.00 2.73
2280 2321 1.132834 CGGGTAGTGTGTGCGTGTATA 59.867 52.381 0.00 0.00 0.00 1.47
2286 2327 4.725556 AGTGTGTGCGTGTATACTTTTG 57.274 40.909 4.17 0.00 0.00 2.44
2291 2332 4.092383 GTGTGCGTGTATACTTTTGTAGGG 59.908 45.833 4.17 0.00 38.44 3.53
2305 2346 8.396272 ACTTTTGTAGGGATGAATGTATATGC 57.604 34.615 0.00 0.00 0.00 3.14
2313 2354 6.426937 AGGGATGAATGTATATGCGTGTTTAC 59.573 38.462 0.00 0.00 0.00 2.01
2327 2380 4.928661 GTGTTTACGAGCATCTGTGATT 57.071 40.909 0.00 0.00 0.00 2.57
2329 2382 6.589830 GTGTTTACGAGCATCTGTGATTAT 57.410 37.500 0.00 0.00 0.00 1.28
2330 2383 6.414079 GTGTTTACGAGCATCTGTGATTATG 58.586 40.000 0.00 0.00 0.00 1.90
2399 2453 2.562298 GGAACCATCACATGCTCCAAAA 59.438 45.455 0.00 0.00 33.38 2.44
2648 2702 3.536917 CACTCGATGGCCGGCCTA 61.537 66.667 43.34 30.35 39.14 3.93
3031 3085 3.181510 GGTAACCTTGCGTTGTGATCATC 60.182 47.826 0.00 0.00 35.79 2.92
3197 3251 7.075674 CATCAGACAATGCACTGTAATTACA 57.924 36.000 17.16 17.16 35.84 2.41
3222 3276 9.269415 CATTATATGACATGATATGTTTGCACG 57.731 33.333 0.00 0.00 45.03 5.34
3241 3295 6.226787 TGCACGGAAATTAATGGTCAAAATT 58.773 32.000 0.00 0.00 0.00 1.82
3289 3343 3.451178 AGTAAAGCCTTGCGATTCTCCTA 59.549 43.478 0.00 0.00 0.00 2.94
3301 3355 4.626042 CGATTCTCCTAGAATTGGTCTGG 58.374 47.826 8.46 0.00 44.41 3.86
3325 3379 2.687935 GGACAAAGTTGAACAAGCTCCA 59.312 45.455 0.00 0.00 0.00 3.86
3389 3445 7.786178 TTTCTCATTATACGTTCTTGATGGG 57.214 36.000 0.00 0.00 0.00 4.00
3396 3452 3.981071 ACGTTCTTGATGGGAAGATCA 57.019 42.857 0.00 0.00 31.98 2.92
3398 3454 3.515502 ACGTTCTTGATGGGAAGATCAGA 59.484 43.478 0.00 0.00 33.86 3.27
3432 7038 8.908786 TCTTTAGATTGACTCAAGTGTTCAAT 57.091 30.769 9.31 9.31 33.19 2.57
3464 7070 2.908073 GCCACTGGCGTTGGTCTTG 61.908 63.158 3.73 0.00 39.62 3.02
3489 7095 4.454728 GGCACCTGCATGAAGATTTTTA 57.545 40.909 0.74 0.00 44.36 1.52
3540 7146 4.363727 CCTTATGGAAGTGGCAACAACGA 61.364 47.826 0.00 0.00 42.78 3.85
3712 7326 9.647797 GAAAGGAAACCAGTTTTCTTAGAAAAA 57.352 29.630 19.97 4.03 45.09 1.94
3740 7357 8.721133 ACCCACCTTTTTAGAATAAAATCAGT 57.279 30.769 0.00 0.00 0.00 3.41
3763 7380 7.067008 CAGTTTTTCAGGGTAGAGAAGAAAACA 59.933 37.037 9.96 0.00 37.76 2.83
3787 7424 7.760340 ACAAAGCGGAAAAACAACTATAAAACA 59.240 29.630 0.00 0.00 0.00 2.83
3807 7444 5.968676 ACAAGTAATTGGCCTAGTCCATA 57.031 39.130 3.32 0.00 35.77 2.74
3851 7488 3.704231 ATTTGCCCGCCATCTCGCT 62.704 57.895 0.00 0.00 0.00 4.93
3889 7526 1.821216 AAATTGGGCTCGTCGATGTT 58.179 45.000 4.21 0.00 0.00 2.71
3938 7575 3.141398 CATCACCCATGCTATGTACCAC 58.859 50.000 0.00 0.00 0.00 4.16
3987 7624 1.094073 AGGTCATGCTTGATGCGCTC 61.094 55.000 9.73 4.27 46.63 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.042569 TGAGCCTAGTTCCACCTCTGTA 59.957 50.000 0.00 0.00 0.00 2.74
22 23 1.561643 TGAGCCTAGTTCCACCTCTG 58.438 55.000 0.00 0.00 0.00 3.35
38 39 2.060980 CCCTCGGGAGTCCCTTGAG 61.061 68.421 26.04 23.07 42.67 3.02
100 102 0.534873 GAGAGGGCCAGAAGAGTCAC 59.465 60.000 6.18 0.00 0.00 3.67
101 103 0.411452 AGAGAGGGCCAGAAGAGTCA 59.589 55.000 6.18 0.00 0.00 3.41
112 114 0.036858 GTGTGACTTGGAGAGAGGGC 60.037 60.000 0.00 0.00 0.00 5.19
130 132 6.877611 ACGGAACAAAACTTTATGATGAGT 57.122 33.333 0.00 0.00 0.00 3.41
131 133 7.114811 CCAAACGGAACAAAACTTTATGATGAG 59.885 37.037 0.00 0.00 0.00 2.90
147 173 1.003223 CAAACGGAGTCCAAACGGAAC 60.003 52.381 10.49 0.00 45.00 3.62
322 357 6.127168 TGGGTCTGATACATCTTCAACGTATT 60.127 38.462 0.00 0.00 0.00 1.89
335 370 5.547465 CTGTTGTTAAGTGGGTCTGATACA 58.453 41.667 0.00 0.00 0.00 2.29
355 390 1.140252 GGTTGATATACCCCACGCTGT 59.860 52.381 0.00 0.00 31.71 4.40
379 414 8.954350 ACGCTACAGGTATAATGTAATAGTAGG 58.046 37.037 0.00 0.00 32.96 3.18
391 426 2.163810 ACCCCACGCTACAGGTATAA 57.836 50.000 0.00 0.00 0.00 0.98
436 471 0.801067 GTAAGTGGTCCGCGCTACTG 60.801 60.000 5.56 0.00 0.00 2.74
460 495 2.910319 AGGTAGACAAATACCACTGGCA 59.090 45.455 5.76 0.00 46.56 4.92
493 528 9.375974 ACTAAATAACCATATGCCACTACTAGA 57.624 33.333 0.00 0.00 0.00 2.43
571 606 8.556213 TCGGCAACTCTATTTTAACTACAATT 57.444 30.769 0.00 0.00 0.00 2.32
580 615 4.395959 ACCGATCGGCAACTCTATTTTA 57.604 40.909 33.62 0.00 39.32 1.52
629 664 5.051816 CCGAGTTTAACCACACAAGAGTAA 58.948 41.667 0.00 0.00 0.00 2.24
634 669 3.002965 GGAACCGAGTTTAACCACACAAG 59.997 47.826 0.00 0.00 0.00 3.16
669 704 0.976641 AGTCGAGAGGCCACAAATCA 59.023 50.000 5.01 0.00 35.23 2.57
692 727 7.255569 GGGTGTTTATTGGAAAGTTATAGTGC 58.744 38.462 0.00 0.00 0.00 4.40
886 923 3.160585 CCACCAGCTCTCCCACAA 58.839 61.111 0.00 0.00 0.00 3.33
1602 1640 1.217882 CGCTTCGTCTGTTGAACCTT 58.782 50.000 0.00 0.00 0.00 3.50
1631 1669 4.520874 TGAAATGTCGCAAGGAATTTACCA 59.479 37.500 0.00 0.00 34.44 3.25
1683 1721 3.566322 CACCCTCAGAATAGTACTCCTCG 59.434 52.174 0.00 0.00 0.00 4.63
1729 1767 5.359576 CAGTTCTAGGAGAGTGCAGATTAGT 59.640 44.000 0.00 0.00 0.00 2.24
1936 1974 0.742281 CATGCAGAAGTGGGGACGAG 60.742 60.000 0.00 0.00 0.00 4.18
2002 2040 2.092968 TGGCTGTTGTCAACTTCAGTCT 60.093 45.455 16.45 0.00 34.23 3.24
2205 2246 5.162794 TGAAATGCAGATGTTCCAAAATCG 58.837 37.500 0.00 0.00 0.00 3.34
2231 2272 9.892130 AACACCTTGGAGATATTAGTTTAAGAG 57.108 33.333 0.00 0.00 0.00 2.85
2233 2274 9.667107 TGAACACCTTGGAGATATTAGTTTAAG 57.333 33.333 0.00 0.00 0.00 1.85
2234 2275 9.444600 GTGAACACCTTGGAGATATTAGTTTAA 57.555 33.333 0.00 0.00 0.00 1.52
2249 2290 1.202604 ACACTACCCGTGAACACCTTG 60.203 52.381 0.00 0.00 46.81 3.61
2267 2308 4.687018 CCTACAAAAGTATACACGCACACA 59.313 41.667 5.50 0.00 0.00 3.72
2280 2321 7.173218 CGCATATACATTCATCCCTACAAAAGT 59.827 37.037 0.00 0.00 0.00 2.66
2286 2327 5.479306 ACACGCATATACATTCATCCCTAC 58.521 41.667 0.00 0.00 0.00 3.18
2291 2332 7.100829 TCGTAAACACGCATATACATTCATC 57.899 36.000 0.00 0.00 0.00 2.92
2305 2346 2.324860 TCACAGATGCTCGTAAACACG 58.675 47.619 0.00 0.00 0.00 4.49
2374 2427 1.667724 GAGCATGTGATGGTTCCTTCG 59.332 52.381 0.00 0.00 41.77 3.79
2399 2453 3.213206 TCAGTCAGCACCTGTCAAAAT 57.787 42.857 0.00 0.00 32.61 1.82
2486 2540 4.008933 GTGGTCAGTGCGCCTCCT 62.009 66.667 4.18 0.00 0.00 3.69
2859 2913 3.771160 GTCGCGGTCCACCTCCAT 61.771 66.667 6.13 0.00 0.00 3.41
3197 3251 8.453320 CCGTGCAAACATATCATGTCATATAAT 58.547 33.333 0.00 0.00 44.07 1.28
3241 3295 2.749076 GTGACACAGGCATTGCTATCAA 59.251 45.455 8.82 0.00 36.51 2.57
3289 3343 1.067295 TGTCCTGCCAGACCAATTCT 58.933 50.000 0.00 0.00 35.83 2.40
3301 3355 2.099756 AGCTTGTTCAACTTTGTCCTGC 59.900 45.455 0.00 0.00 0.00 4.85
3325 3379 5.295292 CCAAAGAGACGACATGAATTATGCT 59.705 40.000 0.00 0.00 40.59 3.79
3386 3442 1.819288 GTCTGACGTCTGATCTTCCCA 59.181 52.381 25.20 0.64 0.00 4.37
3389 3445 4.695217 AAGAGTCTGACGTCTGATCTTC 57.305 45.455 25.20 21.09 0.00 2.87
3396 3452 5.708230 AGTCAATCTAAAGAGTCTGACGTCT 59.292 40.000 17.92 0.00 38.90 4.18
3398 3454 5.473846 TGAGTCAATCTAAAGAGTCTGACGT 59.526 40.000 1.52 0.00 38.90 4.34
3432 7038 4.365505 TGGCCGCAATCGTCGTCA 62.366 61.111 0.00 0.00 0.00 4.35
3464 7070 1.751927 CTTCATGCAGGTGCCCCTC 60.752 63.158 0.00 0.00 39.89 4.30
3489 7095 8.862081 TGGTCTTTCCTCGTTGATGACAACAT 62.862 42.308 12.38 0.00 44.82 2.71
3503 7109 3.432890 CCATAAGGAGCTGGTCTTTCCTC 60.433 52.174 7.52 0.00 40.39 3.71
3507 7113 3.589288 ACTTCCATAAGGAGCTGGTCTTT 59.411 43.478 9.20 9.20 46.74 2.52
3511 7117 1.561542 CCACTTCCATAAGGAGCTGGT 59.438 52.381 0.00 0.00 46.74 4.00
3540 7146 5.636121 TCGTTAAAACTAGCAATCGACACAT 59.364 36.000 0.00 0.00 0.00 3.21
3549 7155 5.640357 CCACTACCATCGTTAAAACTAGCAA 59.360 40.000 0.00 0.00 0.00 3.91
3550 7156 5.172934 CCACTACCATCGTTAAAACTAGCA 58.827 41.667 0.00 0.00 0.00 3.49
3560 7166 2.353011 CCGTACAACCACTACCATCGTT 60.353 50.000 0.00 0.00 0.00 3.85
3716 7330 9.996554 AAACTGATTTTATTCTAAAAAGGTGGG 57.003 29.630 0.00 0.00 32.20 4.61
3736 7353 6.494666 TTCTTCTCTACCCTGAAAAACTGA 57.505 37.500 0.00 0.00 0.00 3.41
3740 7357 7.948034 TTGTTTTCTTCTCTACCCTGAAAAA 57.052 32.000 0.00 0.00 38.03 1.94
3750 7367 6.687081 TTTTCCGCTTTGTTTTCTTCTCTA 57.313 33.333 0.00 0.00 0.00 2.43
3763 7380 8.705048 TTGTTTTATAGTTGTTTTTCCGCTTT 57.295 26.923 0.00 0.00 0.00 3.51
3787 7424 5.568620 CCTATGGACTAGGCCAATTACTT 57.431 43.478 24.47 6.36 40.75 2.24
3851 7488 3.632643 TTAGCTGTGCCTCATGAATGA 57.367 42.857 0.00 0.00 35.16 2.57
3864 7501 1.739067 GACGAGCCCAATTTAGCTGT 58.261 50.000 3.72 3.29 40.11 4.40
3919 7556 1.488812 GGTGGTACATAGCATGGGTGA 59.511 52.381 0.00 0.00 44.52 4.02
3925 7562 3.565307 CATTTGGGGTGGTACATAGCAT 58.435 45.455 0.00 0.00 44.52 3.79
3938 7575 1.381191 GGCCCTGTACCATTTGGGG 60.381 63.158 0.96 0.00 42.91 4.96
3951 7588 0.893727 CCTTTGTTTAGTGCGGCCCT 60.894 55.000 0.00 0.00 0.00 5.19
3961 7598 4.615682 CGCATCAAGCATGACCTTTGTTTA 60.616 41.667 0.00 0.00 46.13 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.