Multiple sequence alignment - TraesCS3B01G263500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G263500 chr3B 100.000 3985 0 0 1 3985 422239453 422243437 0.000000e+00 7360
1 TraesCS3B01G263500 chr2D 96.495 913 31 1 3074 3985 470279458 470280370 0.000000e+00 1507
2 TraesCS3B01G263500 chr2D 96.276 913 33 1 3074 3985 496312853 496313765 0.000000e+00 1496
3 TraesCS3B01G263500 chr2D 82.918 1323 217 9 1615 2934 373298868 373297552 0.000000e+00 1182
4 TraesCS3B01G263500 chr2D 85.185 540 78 2 996 1534 373321720 373321182 1.620000e-153 553
5 TraesCS3B01G263500 chr3D 96.386 913 32 1 3074 3985 75993215 75994127 0.000000e+00 1502
6 TraesCS3B01G263500 chr3D 88.976 127 11 2 861 984 31977466 31977592 1.920000e-33 154
7 TraesCS3B01G263500 chr4B 96.386 913 30 3 3074 3985 135198407 135199317 0.000000e+00 1500
8 TraesCS3B01G263500 chr5D 96.276 913 33 1 3074 3985 241919663 241920575 0.000000e+00 1496
9 TraesCS3B01G263500 chr5D 96.166 913 34 1 3074 3985 70140714 70141626 0.000000e+00 1491
10 TraesCS3B01G263500 chr7D 96.166 913 34 1 3074 3985 87307514 87306602 0.000000e+00 1491
11 TraesCS3B01G263500 chr7D 96.166 913 33 2 3074 3985 544488370 544487459 0.000000e+00 1491
12 TraesCS3B01G263500 chr7D 95.865 919 37 1 3068 3985 532493269 532494187 0.000000e+00 1485
13 TraesCS3B01G263500 chr7D 91.047 793 62 8 1 790 378848849 378849635 0.000000e+00 1062
14 TraesCS3B01G263500 chr6D 82.180 1459 253 7 1610 3065 346548883 346550337 0.000000e+00 1247
15 TraesCS3B01G263500 chr6D 89.698 796 75 6 1 792 132363511 132362719 0.000000e+00 1009
16 TraesCS3B01G263500 chr6D 82.448 866 129 14 2213 3074 456904272 456903426 0.000000e+00 736
17 TraesCS3B01G263500 chr4D 90.136 811 76 4 1 808 31655193 31654384 0.000000e+00 1051
18 TraesCS3B01G263500 chr4D 89.246 809 86 1 1 808 72383267 72384075 0.000000e+00 1011
19 TraesCS3B01G263500 chr2B 90.049 814 76 2 1 809 448104810 448105623 0.000000e+00 1050
20 TraesCS3B01G263500 chr2B 88.807 813 86 5 1 809 199743500 199744311 0.000000e+00 992
21 TraesCS3B01G263500 chr6B 89.853 818 78 5 1 814 715973524 715972708 0.000000e+00 1046
22 TraesCS3B01G263500 chr6B 89.383 810 83 3 2 809 532160184 532160992 0.000000e+00 1016
23 TraesCS3B01G263500 chr7A 89.924 794 75 5 1 792 22154842 22155632 0.000000e+00 1018


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G263500 chr3B 422239453 422243437 3984 False 7360 7360 100.000 1 3985 1 chr3B.!!$F1 3984
1 TraesCS3B01G263500 chr2D 470279458 470280370 912 False 1507 1507 96.495 3074 3985 1 chr2D.!!$F1 911
2 TraesCS3B01G263500 chr2D 496312853 496313765 912 False 1496 1496 96.276 3074 3985 1 chr2D.!!$F2 911
3 TraesCS3B01G263500 chr2D 373297552 373298868 1316 True 1182 1182 82.918 1615 2934 1 chr2D.!!$R1 1319
4 TraesCS3B01G263500 chr2D 373321182 373321720 538 True 553 553 85.185 996 1534 1 chr2D.!!$R2 538
5 TraesCS3B01G263500 chr3D 75993215 75994127 912 False 1502 1502 96.386 3074 3985 1 chr3D.!!$F2 911
6 TraesCS3B01G263500 chr4B 135198407 135199317 910 False 1500 1500 96.386 3074 3985 1 chr4B.!!$F1 911
7 TraesCS3B01G263500 chr5D 241919663 241920575 912 False 1496 1496 96.276 3074 3985 1 chr5D.!!$F2 911
8 TraesCS3B01G263500 chr5D 70140714 70141626 912 False 1491 1491 96.166 3074 3985 1 chr5D.!!$F1 911
9 TraesCS3B01G263500 chr7D 87306602 87307514 912 True 1491 1491 96.166 3074 3985 1 chr7D.!!$R1 911
10 TraesCS3B01G263500 chr7D 544487459 544488370 911 True 1491 1491 96.166 3074 3985 1 chr7D.!!$R2 911
11 TraesCS3B01G263500 chr7D 532493269 532494187 918 False 1485 1485 95.865 3068 3985 1 chr7D.!!$F2 917
12 TraesCS3B01G263500 chr7D 378848849 378849635 786 False 1062 1062 91.047 1 790 1 chr7D.!!$F1 789
13 TraesCS3B01G263500 chr6D 346548883 346550337 1454 False 1247 1247 82.180 1610 3065 1 chr6D.!!$F1 1455
14 TraesCS3B01G263500 chr6D 132362719 132363511 792 True 1009 1009 89.698 1 792 1 chr6D.!!$R1 791
15 TraesCS3B01G263500 chr6D 456903426 456904272 846 True 736 736 82.448 2213 3074 1 chr6D.!!$R2 861
16 TraesCS3B01G263500 chr4D 31654384 31655193 809 True 1051 1051 90.136 1 808 1 chr4D.!!$R1 807
17 TraesCS3B01G263500 chr4D 72383267 72384075 808 False 1011 1011 89.246 1 808 1 chr4D.!!$F1 807
18 TraesCS3B01G263500 chr2B 448104810 448105623 813 False 1050 1050 90.049 1 809 1 chr2B.!!$F2 808
19 TraesCS3B01G263500 chr2B 199743500 199744311 811 False 992 992 88.807 1 809 1 chr2B.!!$F1 808
20 TraesCS3B01G263500 chr6B 715972708 715973524 816 True 1046 1046 89.853 1 814 1 chr6B.!!$R1 813
21 TraesCS3B01G263500 chr6B 532160184 532160992 808 False 1016 1016 89.383 2 809 1 chr6B.!!$F1 807
22 TraesCS3B01G263500 chr7A 22154842 22155632 790 False 1018 1018 89.924 1 792 1 chr7A.!!$F1 791

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
912 927 0.035739 GCGGTAGACACAGGGGAAAA 59.964 55.0 0.00 0.0 0.00 2.29 F
1386 1401 0.527565 GTTTGGAGAACGCATGGCAT 59.472 50.0 0.00 0.0 0.00 4.40 F
1910 1927 0.035881 CCAGAGCTCTGCACCAGAAA 59.964 55.0 34.09 0.0 40.18 2.52 F
2010 2027 0.823356 TGCAGGTCAGAGGTTTTGGC 60.823 55.0 0.00 0.0 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1726 1741 0.108585 TGATAGGCCTGAAATCCGCC 59.891 55.0 17.99 0.00 43.35 6.13 R
2576 2594 0.182775 AAACCAAGCTCGTCAGGGTT 59.817 50.0 0.00 0.00 43.33 4.11 R
2729 2747 0.400594 GCCTATAAACTCGGGCCCAT 59.599 55.0 24.92 9.14 38.77 4.00 R
3023 3043 0.970937 CCTCCCTGACCGACAGCTTA 60.971 60.0 4.47 0.00 44.52 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 0.105964 ACCTGCAGTACGCTGTTCAA 59.894 50.000 13.81 0.00 44.32 2.69
48 49 1.270839 ACCTGCAGTACGCTGTTCAAT 60.271 47.619 13.81 0.00 44.32 2.57
74 75 1.296392 CCTCCACATGAACGCTCCA 59.704 57.895 0.00 0.00 0.00 3.86
86 87 1.300620 CGCTCCACGTGACTCCAAA 60.301 57.895 19.30 0.00 36.87 3.28
118 123 5.010314 TGGTGAAGCGTATTCTCCGTTATAT 59.990 40.000 14.63 0.00 35.47 0.86
119 124 6.207221 TGGTGAAGCGTATTCTCCGTTATATA 59.793 38.462 14.63 0.00 35.47 0.86
128 133 2.559231 TCTCCGTTATATATGCGGCACA 59.441 45.455 19.47 0.00 44.58 4.57
143 148 2.790433 GGCACAATGTCTTTGGGACTA 58.210 47.619 4.93 0.00 44.07 2.59
187 192 1.535687 ACCTTGTGGCCTACTCGGT 60.536 57.895 3.32 8.50 36.63 4.69
194 199 1.295423 GGCCTACTCGGTTGCTGAA 59.705 57.895 0.00 0.00 34.25 3.02
217 222 1.529010 CTGGCTGCCCAAACACTCA 60.529 57.895 17.53 0.00 41.58 3.41
239 244 1.033574 GCTCCACGTCAGGCTACTAT 58.966 55.000 0.00 0.00 0.00 2.12
321 326 2.440627 TCCAGCACCGAGGTAGAGTATA 59.559 50.000 0.00 0.00 0.00 1.47
361 366 2.659016 CGAGTGCTCTTGGCTCCA 59.341 61.111 0.00 0.00 42.39 3.86
364 369 0.540923 GAGTGCTCTTGGCTCCATCT 59.459 55.000 0.00 0.00 42.39 2.90
423 428 4.380550 CCACTCTTGTCTACTGCGATAACA 60.381 45.833 0.00 0.00 0.00 2.41
445 450 2.879907 CGCGGTCTACCTTTCCGA 59.120 61.111 0.00 0.00 46.05 4.55
469 474 0.742990 CCGGTGCACCATCAACGTAT 60.743 55.000 34.16 0.00 44.97 3.06
495 500 5.174395 AGCATATTGAGCTCGATATTCACC 58.826 41.667 27.39 17.70 38.01 4.02
504 509 0.595053 CGATATTCACCTCGTGCGCT 60.595 55.000 9.73 0.00 32.98 5.92
521 526 1.380302 CTAGCAGGTTGCCCTTGGT 59.620 57.895 0.00 0.00 46.52 3.67
543 548 0.176219 TGTTCGGGTTCTTCACGTGT 59.824 50.000 16.51 0.00 44.19 4.49
546 551 1.299620 CGGGTTCTTCACGTGTCGT 60.300 57.895 16.51 0.00 42.36 4.34
547 552 0.040157 CGGGTTCTTCACGTGTCGTA 60.040 55.000 16.51 0.00 38.32 3.43
555 560 0.239082 TCACGTGTCGTAGTCGCAAT 59.761 50.000 16.51 0.00 38.32 3.56
613 619 2.480845 CGTCTTTGAGGAGTTTCGGTT 58.519 47.619 0.00 0.00 0.00 4.44
784 799 6.040842 GCACCCCATCAATACAACATCTATTT 59.959 38.462 0.00 0.00 0.00 1.40
799 814 8.671921 CAACATCTATTTTATTGCAGTCTGTCT 58.328 33.333 0.93 0.00 0.00 3.41
810 825 1.740585 CAGTCTGTCTCGTCTACAGGG 59.259 57.143 12.34 2.88 43.69 4.45
811 826 1.629353 AGTCTGTCTCGTCTACAGGGA 59.371 52.381 12.34 0.00 43.69 4.20
812 827 2.240160 AGTCTGTCTCGTCTACAGGGAT 59.760 50.000 12.34 0.65 43.69 3.85
813 828 2.356382 GTCTGTCTCGTCTACAGGGATG 59.644 54.545 12.34 0.00 43.69 3.51
814 829 2.238898 TCTGTCTCGTCTACAGGGATGA 59.761 50.000 12.34 0.00 43.69 2.92
819 834 4.235939 CTCGTCTACAGGGATGAGAATG 57.764 50.000 7.66 0.00 46.55 2.67
820 835 2.959030 TCGTCTACAGGGATGAGAATGG 59.041 50.000 0.00 0.00 0.00 3.16
821 836 2.036475 CGTCTACAGGGATGAGAATGGG 59.964 54.545 0.00 0.00 0.00 4.00
822 837 2.370189 GTCTACAGGGATGAGAATGGGG 59.630 54.545 0.00 0.00 0.00 4.96
823 838 2.250008 TCTACAGGGATGAGAATGGGGA 59.750 50.000 0.00 0.00 0.00 4.81
824 839 1.516110 ACAGGGATGAGAATGGGGAG 58.484 55.000 0.00 0.00 0.00 4.30
825 840 0.769873 CAGGGATGAGAATGGGGAGG 59.230 60.000 0.00 0.00 0.00 4.30
826 841 1.064824 AGGGATGAGAATGGGGAGGC 61.065 60.000 0.00 0.00 0.00 4.70
827 842 1.072159 GGATGAGAATGGGGAGGCG 59.928 63.158 0.00 0.00 0.00 5.52
828 843 1.072159 GATGAGAATGGGGAGGCGG 59.928 63.158 0.00 0.00 0.00 6.13
829 844 1.384502 ATGAGAATGGGGAGGCGGA 60.385 57.895 0.00 0.00 0.00 5.54
830 845 0.769776 ATGAGAATGGGGAGGCGGAT 60.770 55.000 0.00 0.00 0.00 4.18
831 846 1.072159 GAGAATGGGGAGGCGGATG 59.928 63.158 0.00 0.00 0.00 3.51
832 847 1.694169 AGAATGGGGAGGCGGATGT 60.694 57.895 0.00 0.00 0.00 3.06
833 848 1.227973 GAATGGGGAGGCGGATGTC 60.228 63.158 0.00 0.00 0.00 3.06
834 849 2.682582 GAATGGGGAGGCGGATGTCC 62.683 65.000 0.00 0.00 0.00 4.02
835 850 4.731853 TGGGGAGGCGGATGTCCA 62.732 66.667 0.00 0.00 34.14 4.02
836 851 3.171388 GGGGAGGCGGATGTCCAT 61.171 66.667 0.00 0.00 34.14 3.41
837 852 1.841556 GGGGAGGCGGATGTCCATA 60.842 63.158 0.00 0.00 34.14 2.74
838 853 1.201429 GGGGAGGCGGATGTCCATAT 61.201 60.000 0.00 0.00 34.14 1.78
839 854 0.693049 GGGAGGCGGATGTCCATATT 59.307 55.000 0.00 0.00 34.14 1.28
840 855 1.611673 GGGAGGCGGATGTCCATATTG 60.612 57.143 0.00 0.00 34.14 1.90
841 856 1.611673 GGAGGCGGATGTCCATATTGG 60.612 57.143 0.00 0.00 39.43 3.16
842 857 0.401738 AGGCGGATGTCCATATTGGG 59.598 55.000 0.00 0.00 38.32 4.12
843 858 1.244019 GGCGGATGTCCATATTGGGC 61.244 60.000 0.00 0.00 43.98 5.36
844 859 1.244019 GCGGATGTCCATATTGGGCC 61.244 60.000 0.00 0.00 42.76 5.80
845 860 0.955428 CGGATGTCCATATTGGGCCG 60.955 60.000 0.00 0.00 42.76 6.13
846 861 0.609131 GGATGTCCATATTGGGCCGG 60.609 60.000 0.00 0.00 42.76 6.13
847 862 1.228552 ATGTCCATATTGGGCCGGC 60.229 57.895 21.18 21.18 42.76 6.13
848 863 1.719063 ATGTCCATATTGGGCCGGCT 61.719 55.000 28.56 9.11 42.76 5.52
849 864 1.152756 GTCCATATTGGGCCGGCTT 60.153 57.895 28.56 11.56 35.72 4.35
850 865 1.152777 TCCATATTGGGCCGGCTTG 60.153 57.895 28.56 13.75 38.32 4.01
851 866 2.202395 CCATATTGGGCCGGCTTGG 61.202 63.158 28.56 18.51 42.50 3.61
852 867 1.455587 CATATTGGGCCGGCTTGGT 60.456 57.895 28.56 13.06 41.21 3.67
853 868 1.455587 ATATTGGGCCGGCTTGGTG 60.456 57.895 28.56 0.00 41.21 4.17
854 869 2.223464 ATATTGGGCCGGCTTGGTGT 62.223 55.000 28.56 10.44 41.21 4.16
855 870 2.830186 TATTGGGCCGGCTTGGTGTC 62.830 60.000 28.56 7.30 41.21 3.67
857 872 4.966787 GGGCCGGCTTGGTGTCAA 62.967 66.667 28.56 0.00 41.21 3.18
864 879 3.365265 CTTGGTGTCAAGGCGCCC 61.365 66.667 26.15 8.39 44.89 6.13
865 880 4.196778 TTGGTGTCAAGGCGCCCA 62.197 61.111 26.15 11.55 38.20 5.36
866 881 3.723097 TTGGTGTCAAGGCGCCCAA 62.723 57.895 26.15 15.59 38.20 4.12
867 882 3.670377 GGTGTCAAGGCGCCCAAC 61.670 66.667 26.15 19.30 33.14 3.77
889 904 2.644992 GGCCTCAACCGCAACTTG 59.355 61.111 0.00 0.00 0.00 3.16
890 905 2.193536 GGCCTCAACCGCAACTTGT 61.194 57.895 0.00 0.00 0.00 3.16
891 906 1.282875 GCCTCAACCGCAACTTGTC 59.717 57.895 0.00 0.00 0.00 3.18
892 907 1.949257 CCTCAACCGCAACTTGTCC 59.051 57.895 0.00 0.00 0.00 4.02
893 908 1.569493 CTCAACCGCAACTTGTCCG 59.431 57.895 0.00 0.00 0.00 4.79
894 909 2.051345 CAACCGCAACTTGTCCGC 60.051 61.111 0.00 0.00 0.00 5.54
898 913 2.735478 CGCAACTTGTCCGCGGTA 60.735 61.111 27.15 13.22 45.08 4.02
899 914 2.726691 CGCAACTTGTCCGCGGTAG 61.727 63.158 27.15 21.84 45.08 3.18
900 915 1.373748 GCAACTTGTCCGCGGTAGA 60.374 57.895 27.15 10.91 0.00 2.59
901 916 1.623973 GCAACTTGTCCGCGGTAGAC 61.624 60.000 27.15 17.12 34.72 2.59
902 917 0.319211 CAACTTGTCCGCGGTAGACA 60.319 55.000 27.15 19.83 42.36 3.41
903 918 0.319297 AACTTGTCCGCGGTAGACAC 60.319 55.000 27.15 16.29 43.70 3.67
904 919 1.287815 CTTGTCCGCGGTAGACACA 59.712 57.895 27.15 19.00 43.70 3.72
905 920 0.732880 CTTGTCCGCGGTAGACACAG 60.733 60.000 27.15 16.63 43.70 3.66
906 921 2.149803 TTGTCCGCGGTAGACACAGG 62.150 60.000 27.15 0.00 43.70 4.00
907 922 3.066190 TCCGCGGTAGACACAGGG 61.066 66.667 27.15 0.00 33.51 4.45
908 923 4.143333 CCGCGGTAGACACAGGGG 62.143 72.222 19.50 0.00 44.22 4.79
909 924 3.066190 CGCGGTAGACACAGGGGA 61.066 66.667 0.00 0.00 0.00 4.81
910 925 2.642254 CGCGGTAGACACAGGGGAA 61.642 63.158 0.00 0.00 0.00 3.97
911 926 1.675219 GCGGTAGACACAGGGGAAA 59.325 57.895 0.00 0.00 0.00 3.13
912 927 0.035739 GCGGTAGACACAGGGGAAAA 59.964 55.000 0.00 0.00 0.00 2.29
913 928 1.339727 GCGGTAGACACAGGGGAAAAT 60.340 52.381 0.00 0.00 0.00 1.82
914 929 2.093341 GCGGTAGACACAGGGGAAAATA 60.093 50.000 0.00 0.00 0.00 1.40
915 930 3.528532 CGGTAGACACAGGGGAAAATAC 58.471 50.000 0.00 0.00 0.00 1.89
916 931 3.055675 CGGTAGACACAGGGGAAAATACA 60.056 47.826 0.00 0.00 0.00 2.29
917 932 4.563993 CGGTAGACACAGGGGAAAATACAA 60.564 45.833 0.00 0.00 0.00 2.41
918 933 5.506708 GGTAGACACAGGGGAAAATACAAT 58.493 41.667 0.00 0.00 0.00 2.71
919 934 5.589050 GGTAGACACAGGGGAAAATACAATC 59.411 44.000 0.00 0.00 0.00 2.67
920 935 5.255397 AGACACAGGGGAAAATACAATCA 57.745 39.130 0.00 0.00 0.00 2.57
921 936 5.640147 AGACACAGGGGAAAATACAATCAA 58.360 37.500 0.00 0.00 0.00 2.57
922 937 6.074648 AGACACAGGGGAAAATACAATCAAA 58.925 36.000 0.00 0.00 0.00 2.69
923 938 6.553100 AGACACAGGGGAAAATACAATCAAAA 59.447 34.615 0.00 0.00 0.00 2.44
924 939 6.758254 ACACAGGGGAAAATACAATCAAAAG 58.242 36.000 0.00 0.00 0.00 2.27
925 940 5.639082 CACAGGGGAAAATACAATCAAAAGC 59.361 40.000 0.00 0.00 0.00 3.51
926 941 5.543790 ACAGGGGAAAATACAATCAAAAGCT 59.456 36.000 0.00 0.00 0.00 3.74
927 942 6.723977 ACAGGGGAAAATACAATCAAAAGCTA 59.276 34.615 0.00 0.00 0.00 3.32
928 943 7.234577 ACAGGGGAAAATACAATCAAAAGCTAA 59.765 33.333 0.00 0.00 0.00 3.09
929 944 8.093927 CAGGGGAAAATACAATCAAAAGCTAAA 58.906 33.333 0.00 0.00 0.00 1.85
930 945 8.655901 AGGGGAAAATACAATCAAAAGCTAAAA 58.344 29.630 0.00 0.00 0.00 1.52
931 946 9.448438 GGGGAAAATACAATCAAAAGCTAAAAT 57.552 29.630 0.00 0.00 0.00 1.82
985 1000 9.765795 AAAACATATTTAAAATTCCACCGTCAA 57.234 25.926 0.00 0.00 0.00 3.18
986 1001 9.765795 AAACATATTTAAAATTCCACCGTCAAA 57.234 25.926 0.00 0.00 0.00 2.69
987 1002 8.980143 ACATATTTAAAATTCCACCGTCAAAG 57.020 30.769 0.00 0.00 0.00 2.77
988 1003 8.581578 ACATATTTAAAATTCCACCGTCAAAGT 58.418 29.630 0.00 0.00 0.00 2.66
989 1004 8.859156 CATATTTAAAATTCCACCGTCAAAGTG 58.141 33.333 0.00 0.00 34.91 3.16
990 1005 2.793278 AAATTCCACCGTCAAAGTGC 57.207 45.000 0.00 0.00 33.75 4.40
991 1006 0.958822 AATTCCACCGTCAAAGTGCC 59.041 50.000 0.00 0.00 33.75 5.01
992 1007 1.234615 ATTCCACCGTCAAAGTGCCG 61.235 55.000 0.00 0.00 33.75 5.69
993 1008 4.025401 CCACCGTCAAAGTGCCGC 62.025 66.667 0.00 0.00 33.75 6.53
994 1009 4.025401 CACCGTCAAAGTGCCGCC 62.025 66.667 0.00 0.00 0.00 6.13
1003 1018 3.868200 AAGTGCCGCCAAAGGAGGG 62.868 63.158 7.93 0.00 43.05 4.30
1007 1022 2.434331 CCGCCAAAGGAGGGTTGA 59.566 61.111 0.00 0.00 39.04 3.18
1028 1043 2.384029 AGAGGAGGAGGTTTCCAGTACT 59.616 50.000 0.00 0.00 46.64 2.73
1031 1046 4.095211 AGGAGGAGGTTTCCAGTACTAAC 58.905 47.826 0.00 0.00 46.64 2.34
1038 1053 3.528532 GTTTCCAGTACTAACCCGATGG 58.471 50.000 0.00 0.00 37.80 3.51
1040 1055 2.381911 TCCAGTACTAACCCGATGGAC 58.618 52.381 0.00 0.00 32.04 4.02
1041 1056 2.104967 CCAGTACTAACCCGATGGACA 58.895 52.381 0.00 0.00 34.81 4.02
1044 1059 4.369182 CAGTACTAACCCGATGGACATTC 58.631 47.826 0.00 0.00 34.81 2.67
1047 1062 5.895534 AGTACTAACCCGATGGACATTCTAA 59.104 40.000 0.00 0.00 34.81 2.10
1067 1082 1.067071 AGTACTAAGCTCCAACGCACC 60.067 52.381 0.00 0.00 0.00 5.01
1073 1088 3.283684 CTCCAACGCACCGCCAAA 61.284 61.111 0.00 0.00 0.00 3.28
1082 1097 2.978010 ACCGCCAAAGCACTTCGG 60.978 61.111 7.29 7.29 45.04 4.30
1085 1100 2.680913 CGCCAAAGCACTTCGGAGG 61.681 63.158 0.00 0.00 39.83 4.30
1092 1107 4.410400 CACTTCGGAGGTGGGGCC 62.410 72.222 12.05 0.00 37.58 5.80
1100 1115 2.121506 AGGTGGGGCCAGAGGAAA 60.122 61.111 4.39 0.00 40.61 3.13
1103 1118 1.303643 GTGGGGCCAGAGGAAACAG 60.304 63.158 4.39 0.00 0.00 3.16
1119 1134 3.308438 AACAGAGTGCCATGAATTTGC 57.692 42.857 0.00 0.00 0.00 3.68
1127 1142 3.808726 GTGCCATGAATTTGCAGTTTCAA 59.191 39.130 14.88 0.00 35.63 2.69
1128 1143 4.059511 TGCCATGAATTTGCAGTTTCAAG 58.940 39.130 14.88 11.42 35.63 3.02
1129 1144 3.120442 GCCATGAATTTGCAGTTTCAAGC 60.120 43.478 14.88 15.67 35.63 4.01
1150 1165 4.115516 GCAGCTAACGAGATCATTCTTCA 58.884 43.478 0.00 0.00 30.30 3.02
1157 1172 5.804944 ACGAGATCATTCTTCATCTGGAT 57.195 39.130 0.00 0.00 31.29 3.41
1176 1191 2.857186 TACAGCACATGAGGCAAGAA 57.143 45.000 14.68 0.00 0.00 2.52
1177 1192 1.242076 ACAGCACATGAGGCAAGAAC 58.758 50.000 14.68 0.00 0.00 3.01
1185 1200 3.118112 ACATGAGGCAAGAACCCTATCTG 60.118 47.826 0.00 0.00 31.41 2.90
1187 1202 1.488393 GAGGCAAGAACCCTATCTGCT 59.512 52.381 0.00 0.00 31.41 4.24
1188 1203 1.488393 AGGCAAGAACCCTATCTGCTC 59.512 52.381 0.00 0.00 0.00 4.26
1228 1243 4.390603 GGGCTTTTTAAAAGGTAAATGCCG 59.609 41.667 17.68 0.00 46.95 5.69
1232 1247 2.517998 TAAAAGGTAAATGCCGGGCT 57.482 45.000 21.46 2.03 0.00 5.19
1254 1269 1.556911 TGGCATCCTTGGAGAGAGTTC 59.443 52.381 0.00 0.00 0.00 3.01
1256 1271 1.478510 GCATCCTTGGAGAGAGTTCGA 59.521 52.381 0.00 0.00 0.00 3.71
1258 1273 2.588464 TCCTTGGAGAGAGTTCGACT 57.412 50.000 0.00 0.00 0.00 4.18
1274 1289 3.384668 TCGACTGAGACAAAGAGCAAAG 58.615 45.455 0.00 0.00 0.00 2.77
1277 1292 4.450419 CGACTGAGACAAAGAGCAAAGATT 59.550 41.667 0.00 0.00 0.00 2.40
1286 1301 8.320617 AGACAAAGAGCAAAGATTAGAGATCTT 58.679 33.333 0.00 0.00 39.82 2.40
1287 1302 8.860780 ACAAAGAGCAAAGATTAGAGATCTTT 57.139 30.769 7.91 7.91 45.99 2.52
1306 1321 4.289672 TCTTTGGGAAGGAGATGCTAACTT 59.710 41.667 0.00 0.00 33.56 2.66
1346 1361 1.750193 CTAATGGGCGCAGAAGGAAA 58.250 50.000 10.83 0.00 0.00 3.13
1348 1363 0.539438 AATGGGCGCAGAAGGAAACA 60.539 50.000 10.83 0.00 0.00 2.83
1352 1367 0.729690 GGCGCAGAAGGAAACATCTC 59.270 55.000 10.83 0.00 35.94 2.75
1355 1370 3.198068 GCGCAGAAGGAAACATCTCATA 58.802 45.455 0.30 0.00 35.94 2.15
1358 1373 3.879892 GCAGAAGGAAACATCTCATACCC 59.120 47.826 0.00 0.00 35.94 3.69
1360 1375 5.163301 GCAGAAGGAAACATCTCATACCCTA 60.163 44.000 0.00 0.00 35.94 3.53
1362 1377 5.367060 AGAAGGAAACATCTCATACCCTACC 59.633 44.000 0.00 0.00 31.52 3.18
1369 1384 3.116096 TCTCATACCCTACCTGCAGTT 57.884 47.619 13.81 0.00 0.00 3.16
1373 1388 2.032965 TACCCTACCTGCAGTTTGGA 57.967 50.000 13.18 0.00 0.00 3.53
1374 1389 0.693049 ACCCTACCTGCAGTTTGGAG 59.307 55.000 13.18 3.57 35.43 3.86
1376 1391 1.351017 CCCTACCTGCAGTTTGGAGAA 59.649 52.381 13.18 0.00 38.14 2.87
1377 1392 2.427506 CCTACCTGCAGTTTGGAGAAC 58.572 52.381 13.81 0.00 38.14 3.01
1385 1400 0.537143 AGTTTGGAGAACGCATGGCA 60.537 50.000 0.00 0.00 0.00 4.92
1386 1401 0.527565 GTTTGGAGAACGCATGGCAT 59.472 50.000 0.00 0.00 0.00 4.40
1409 1424 6.642733 TCCTCCATGGAAGAGAAGTTAAAT 57.357 37.500 17.00 0.00 42.94 1.40
1410 1425 6.653989 TCCTCCATGGAAGAGAAGTTAAATC 58.346 40.000 17.00 0.00 42.94 2.17
1415 1430 5.241403 TGGAAGAGAAGTTAAATCTGGCA 57.759 39.130 0.00 0.00 0.00 4.92
1416 1431 5.819991 TGGAAGAGAAGTTAAATCTGGCAT 58.180 37.500 0.00 0.00 0.00 4.40
1418 1433 7.577303 TGGAAGAGAAGTTAAATCTGGCATAT 58.423 34.615 0.00 0.00 0.00 1.78
1433 1448 7.095183 TCTGGCATATGATTTCTTTAGGGAT 57.905 36.000 6.97 0.00 0.00 3.85
1469 1484 1.134491 ACGGCTAGGCACAAGGTTATC 60.134 52.381 17.45 0.00 0.00 1.75
1472 1487 3.555966 GGCTAGGCACAAGGTTATCAAT 58.444 45.455 12.16 0.00 0.00 2.57
1475 1490 5.454755 GGCTAGGCACAAGGTTATCAATCTA 60.455 44.000 12.16 0.00 0.00 1.98
1479 1494 4.513318 GGCACAAGGTTATCAATCTAGAGC 59.487 45.833 0.00 0.00 0.00 4.09
1481 1496 4.747108 CACAAGGTTATCAATCTAGAGCGG 59.253 45.833 0.00 0.00 0.00 5.52
1493 1508 4.660938 GAGCGGTTGGGCCTTGGT 62.661 66.667 4.53 0.00 34.25 3.67
1501 1516 3.487372 GGTTGGGCCTTGGTAAGATATC 58.513 50.000 4.53 0.00 0.00 1.63
1508 1523 4.280174 GGCCTTGGTAAGATATCTACGACA 59.720 45.833 5.46 0.67 0.00 4.35
1511 1526 6.622549 CCTTGGTAAGATATCTACGACATCC 58.377 44.000 5.46 2.45 0.00 3.51
1515 1530 6.181908 GGTAAGATATCTACGACATCCTCCT 58.818 44.000 5.46 0.00 0.00 3.69
1516 1531 7.037802 TGGTAAGATATCTACGACATCCTCCTA 60.038 40.741 5.46 0.00 0.00 2.94
1518 1533 5.996644 AGATATCTACGACATCCTCCTAGG 58.003 45.833 2.53 0.82 36.46 3.02
1519 1534 2.273538 TCTACGACATCCTCCTAGGC 57.726 55.000 2.96 0.00 34.61 3.93
1520 1535 1.775459 TCTACGACATCCTCCTAGGCT 59.225 52.381 2.96 0.00 34.61 4.58
1521 1536 2.175069 TCTACGACATCCTCCTAGGCTT 59.825 50.000 2.96 0.00 34.61 4.35
1534 1549 2.120496 GGCTTTGGAGGCCCCTTT 59.880 61.111 0.00 0.00 43.49 3.11
1535 1550 1.984570 GGCTTTGGAGGCCCCTTTC 60.985 63.158 0.00 0.00 43.49 2.62
1536 1551 1.077445 GCTTTGGAGGCCCCTTTCT 59.923 57.895 0.00 0.00 35.38 2.52
1537 1552 0.967887 GCTTTGGAGGCCCCTTTCTC 60.968 60.000 0.00 0.00 35.38 2.87
1538 1553 0.701147 CTTTGGAGGCCCCTTTCTCT 59.299 55.000 0.00 0.00 35.38 3.10
1539 1554 1.916181 CTTTGGAGGCCCCTTTCTCTA 59.084 52.381 0.00 0.00 35.38 2.43
1540 1555 1.584724 TTGGAGGCCCCTTTCTCTAG 58.415 55.000 0.00 0.00 35.38 2.43
1541 1556 0.716591 TGGAGGCCCCTTTCTCTAGA 59.283 55.000 0.00 0.00 35.38 2.43
1542 1557 1.343478 TGGAGGCCCCTTTCTCTAGAG 60.343 57.143 13.98 13.98 35.38 2.43
1543 1558 1.062810 GGAGGCCCCTTTCTCTAGAGA 60.063 57.143 18.76 18.76 35.27 3.10
1544 1559 2.316108 GAGGCCCCTTTCTCTAGAGAG 58.684 57.143 21.34 11.68 43.36 3.20
1545 1560 1.062505 AGGCCCCTTTCTCTAGAGAGG 60.063 57.143 21.34 19.20 43.81 3.69
1546 1561 1.062810 GGCCCCTTTCTCTAGAGAGGA 60.063 57.143 23.45 15.54 46.24 3.71
1547 1562 2.316108 GCCCCTTTCTCTAGAGAGGAG 58.684 57.143 23.45 21.80 46.24 3.69
1548 1563 2.091555 GCCCCTTTCTCTAGAGAGGAGA 60.092 54.545 23.45 8.41 46.24 3.71
1549 1564 3.437931 GCCCCTTTCTCTAGAGAGGAGAT 60.438 52.174 23.45 0.00 46.24 2.75
1550 1565 4.407365 CCCCTTTCTCTAGAGAGGAGATC 58.593 52.174 23.45 0.00 46.24 2.75
1551 1566 4.141041 CCCCTTTCTCTAGAGAGGAGATCA 60.141 50.000 23.45 6.76 46.24 2.92
1552 1567 5.454062 CCCTTTCTCTAGAGAGGAGATCAA 58.546 45.833 23.45 13.08 46.24 2.57
1553 1568 5.536161 CCCTTTCTCTAGAGAGGAGATCAAG 59.464 48.000 23.45 19.70 46.24 3.02
1554 1569 6.364701 CCTTTCTCTAGAGAGGAGATCAAGA 58.635 44.000 25.40 7.74 46.24 3.02
1555 1570 6.833416 CCTTTCTCTAGAGAGGAGATCAAGAA 59.167 42.308 25.40 13.40 46.24 2.52
1556 1571 7.013655 CCTTTCTCTAGAGAGGAGATCAAGAAG 59.986 44.444 25.40 19.45 46.24 2.85
1557 1572 5.940617 TCTCTAGAGAGGAGATCAAGAAGG 58.059 45.833 18.76 0.00 42.30 3.46
1558 1573 5.431731 TCTCTAGAGAGGAGATCAAGAAGGT 59.568 44.000 18.76 0.00 42.30 3.50
1559 1574 6.617784 TCTCTAGAGAGGAGATCAAGAAGGTA 59.382 42.308 18.76 0.00 42.30 3.08
1560 1575 6.837312 TCTAGAGAGGAGATCAAGAAGGTAG 58.163 44.000 0.00 0.00 0.00 3.18
1561 1576 5.466127 AGAGAGGAGATCAAGAAGGTAGT 57.534 43.478 0.00 0.00 0.00 2.73
1562 1577 5.200483 AGAGAGGAGATCAAGAAGGTAGTG 58.800 45.833 0.00 0.00 0.00 2.74
1563 1578 4.285863 AGAGGAGATCAAGAAGGTAGTGG 58.714 47.826 0.00 0.00 0.00 4.00
1564 1579 4.017037 AGAGGAGATCAAGAAGGTAGTGGA 60.017 45.833 0.00 0.00 0.00 4.02
1565 1580 4.027437 AGGAGATCAAGAAGGTAGTGGAC 58.973 47.826 0.00 0.00 0.00 4.02
1566 1581 3.181485 GGAGATCAAGAAGGTAGTGGACG 60.181 52.174 0.00 0.00 0.00 4.79
1567 1582 3.695060 GAGATCAAGAAGGTAGTGGACGA 59.305 47.826 0.00 0.00 0.00 4.20
1568 1583 4.282496 AGATCAAGAAGGTAGTGGACGAT 58.718 43.478 0.00 0.00 0.00 3.73
1569 1584 5.446860 AGATCAAGAAGGTAGTGGACGATA 58.553 41.667 0.00 0.00 0.00 2.92
1570 1585 6.071984 AGATCAAGAAGGTAGTGGACGATAT 58.928 40.000 0.00 0.00 0.00 1.63
1571 1586 6.551601 AGATCAAGAAGGTAGTGGACGATATT 59.448 38.462 0.00 0.00 0.00 1.28
1572 1587 6.145338 TCAAGAAGGTAGTGGACGATATTC 57.855 41.667 0.00 0.00 0.00 1.75
1573 1588 5.068723 TCAAGAAGGTAGTGGACGATATTCC 59.931 44.000 0.00 0.00 36.03 3.01
1574 1589 4.805744 AGAAGGTAGTGGACGATATTCCT 58.194 43.478 0.00 0.00 36.51 3.36
1575 1590 5.209659 AGAAGGTAGTGGACGATATTCCTT 58.790 41.667 0.00 0.00 36.51 3.36
1576 1591 5.302313 AGAAGGTAGTGGACGATATTCCTTC 59.698 44.000 11.23 11.23 45.52 3.46
1577 1592 4.805744 AGGTAGTGGACGATATTCCTTCT 58.194 43.478 0.00 0.00 36.51 2.85
1578 1593 4.585162 AGGTAGTGGACGATATTCCTTCTG 59.415 45.833 0.00 0.00 36.51 3.02
1579 1594 4.583489 GGTAGTGGACGATATTCCTTCTGA 59.417 45.833 0.00 0.00 36.51 3.27
1580 1595 4.657436 AGTGGACGATATTCCTTCTGAC 57.343 45.455 0.00 0.00 36.51 3.51
1581 1596 3.385111 AGTGGACGATATTCCTTCTGACC 59.615 47.826 0.00 0.00 36.51 4.02
1582 1597 2.361119 TGGACGATATTCCTTCTGACCG 59.639 50.000 0.00 0.00 36.51 4.79
1583 1598 2.288273 GGACGATATTCCTTCTGACCGG 60.288 54.545 0.00 0.00 32.24 5.28
1584 1599 1.687123 ACGATATTCCTTCTGACCGGG 59.313 52.381 6.32 0.00 0.00 5.73
1585 1600 1.605712 CGATATTCCTTCTGACCGGGC 60.606 57.143 6.32 1.57 0.00 6.13
1586 1601 0.765510 ATATTCCTTCTGACCGGGCC 59.234 55.000 3.83 0.00 0.00 5.80
1587 1602 1.342672 TATTCCTTCTGACCGGGCCC 61.343 60.000 13.57 13.57 0.00 5.80
1590 1605 4.101448 CTTCTGACCGGGCCCCTG 62.101 72.222 18.66 10.76 0.00 4.45
1600 1615 4.463788 GGCCCCTGGACCCAATGG 62.464 72.222 0.00 0.00 37.80 3.16
1613 1628 0.742990 CCAATGGGTTCTTAGCGCGA 60.743 55.000 12.10 0.00 0.00 5.87
1618 1633 1.134521 TGGGTTCTTAGCGCGAATGAT 60.135 47.619 12.10 0.00 0.00 2.45
1621 1636 3.546218 GGGTTCTTAGCGCGAATGATTTC 60.546 47.826 12.10 0.00 0.00 2.17
1627 1642 2.774587 CGCGAATGATTTCATGGCG 58.225 52.632 18.51 18.51 46.04 5.69
1630 1645 1.861202 GCGAATGATTTCATGGCGGTG 60.861 52.381 14.10 0.00 36.56 4.94
1636 1651 1.605710 GATTTCATGGCGGTGATGGAG 59.394 52.381 0.00 0.00 0.00 3.86
1643 1658 2.677228 CGGTGATGGAGGCCCTTT 59.323 61.111 0.00 0.00 0.00 3.11
1648 1663 1.215423 GTGATGGAGGCCCTTTACCAT 59.785 52.381 13.29 13.29 44.40 3.55
1652 1667 1.615262 GAGGCCCTTTACCATGGCT 59.385 57.895 13.04 1.45 44.71 4.75
1653 1668 0.753111 GAGGCCCTTTACCATGGCTG 60.753 60.000 13.04 0.00 44.71 4.85
1663 1678 1.366319 ACCATGGCTGTTTCTCCTCT 58.634 50.000 13.04 0.00 0.00 3.69
1673 1688 2.777692 TGTTTCTCCTCTTTCAGTGGGT 59.222 45.455 0.00 0.00 30.13 4.51
1705 1720 2.490328 TTCTCACGCTTTTGCCAAAG 57.510 45.000 5.92 5.92 43.93 2.77
1712 1727 1.608590 CGCTTTTGCCAAAGAAGGAGA 59.391 47.619 14.13 0.00 41.97 3.71
1714 1729 2.608998 GCTTTTGCCAAAGAAGGAGAGC 60.609 50.000 14.13 0.00 41.97 4.09
1716 1731 2.664402 TTGCCAAAGAAGGAGAGCTT 57.336 45.000 0.00 0.00 0.00 3.74
1753 1768 6.314896 CGGATTTCAGGCCTATCAATCTAATC 59.685 42.308 21.56 14.13 0.00 1.75
1761 1776 5.190528 GGCCTATCAATCTAATCCATGGAGA 59.809 44.000 21.33 12.57 0.00 3.71
1775 1790 0.826715 TGGAGAGGCCAAGATCTTCG 59.173 55.000 5.01 0.00 45.87 3.79
1783 1798 1.135575 GCCAAGATCTTCGCAAAGGTG 60.136 52.381 18.76 0.00 33.03 4.00
1790 1805 0.318107 CTTCGCAAAGGTGTTGGCAG 60.318 55.000 0.00 0.00 31.10 4.85
1791 1806 2.348605 TTCGCAAAGGTGTTGGCAGC 62.349 55.000 0.00 0.00 42.96 5.25
1809 1825 1.375908 CTCGCTTGGCCTGTTGCTA 60.376 57.895 3.32 0.00 40.92 3.49
1854 1871 4.345257 AGAGTGCTTTTGTCACTAGGAGAA 59.655 41.667 0.00 0.00 44.09 2.87
1864 1881 7.956328 TTGTCACTAGGAGAACTATACATGT 57.044 36.000 2.69 2.69 0.00 3.21
1889 1906 9.034544 GTGAATTTAAAGTTTGTTCAGAATGCT 57.965 29.630 11.02 0.00 34.76 3.79
1910 1927 0.035881 CCAGAGCTCTGCACCAGAAA 59.964 55.000 34.09 0.00 40.18 2.52
1937 1954 4.808364 CACCCGTTTGTGTTGATGAAAATT 59.192 37.500 0.00 0.00 0.00 1.82
1978 1995 6.284891 TGATTCATTGTCTTGGGAATTTCC 57.715 37.500 6.91 6.91 35.23 3.13
2010 2027 0.823356 TGCAGGTCAGAGGTTTTGGC 60.823 55.000 0.00 0.00 0.00 4.52
2045 2062 1.186200 TGGATCCGTGGTCTTCTGAG 58.814 55.000 7.39 0.00 0.00 3.35
2049 2066 4.467232 CGTGGTCTTCTGAGCTCG 57.533 61.111 9.64 4.19 46.04 5.03
2095 2112 1.886886 GGAAACCAGTACGCCTTTCA 58.113 50.000 11.74 0.00 0.00 2.69
2103 2121 1.844289 TACGCCTTTCACCCTGGGT 60.844 57.895 14.05 14.05 35.62 4.51
2121 2139 1.581223 GTAAGGGAGTAAGGCAGGGT 58.419 55.000 0.00 0.00 0.00 4.34
2139 2157 1.077285 TGACCCTCTATCGTCGGCA 60.077 57.895 0.00 0.00 0.00 5.69
2142 2160 1.102222 ACCCTCTATCGTCGGCACTC 61.102 60.000 0.00 0.00 0.00 3.51
2145 2163 1.002251 CCTCTATCGTCGGCACTCTTC 60.002 57.143 0.00 0.00 0.00 2.87
2151 2169 2.089201 TCGTCGGCACTCTTCATCTTA 58.911 47.619 0.00 0.00 0.00 2.10
2163 2181 5.306419 ACTCTTCATCTTAGCCATAGATGCA 59.694 40.000 12.91 0.00 45.50 3.96
2188 2206 2.148446 AGCAATGCTCAATTGGGCTA 57.852 45.000 29.56 16.98 45.05 3.93
2189 2207 1.753073 AGCAATGCTCAATTGGGCTAC 59.247 47.619 29.56 16.23 45.05 3.58
2207 2225 1.160137 ACGAGTCAAAATCTGCTGGC 58.840 50.000 0.00 0.00 0.00 4.85
2208 2226 1.271054 ACGAGTCAAAATCTGCTGGCT 60.271 47.619 0.00 0.00 0.00 4.75
2211 2229 3.063180 CGAGTCAAAATCTGCTGGCTAAG 59.937 47.826 0.00 0.00 0.00 2.18
2224 2242 1.974957 TGGCTAAGCTTGGTGTAGACA 59.025 47.619 9.86 2.97 30.25 3.41
2226 2244 2.028020 GGCTAAGCTTGGTGTAGACAGT 60.028 50.000 9.86 0.00 0.00 3.55
2229 2247 3.963428 AAGCTTGGTGTAGACAGTAGG 57.037 47.619 0.00 0.00 0.00 3.18
2235 2253 2.915738 GTGTAGACAGTAGGACACCG 57.084 55.000 0.00 0.00 36.93 4.94
2252 2270 1.343075 ACCGAGGGCCTCTATCTTTGA 60.343 52.381 29.81 0.00 0.00 2.69
2253 2271 1.069358 CCGAGGGCCTCTATCTTTGAC 59.931 57.143 29.81 1.55 0.00 3.18
2254 2272 1.757118 CGAGGGCCTCTATCTTTGACA 59.243 52.381 29.81 0.00 0.00 3.58
2259 2277 4.133078 GGGCCTCTATCTTTGACAATGAG 58.867 47.826 0.84 0.00 0.00 2.90
2268 2286 5.092554 TCTTTGACAATGAGGCGGTTATA 57.907 39.130 0.00 0.00 0.00 0.98
2277 2295 2.285756 TGAGGCGGTTATATTTTTCGCG 59.714 45.455 0.00 0.00 46.22 5.87
2283 2301 3.359654 GGTTATATTTTTCGCGCCAGTG 58.640 45.455 0.00 0.00 0.00 3.66
2295 2313 1.520342 GCCAGTGGCGTCTGATCTC 60.520 63.158 20.55 0.00 39.62 2.75
2320 2338 3.626670 GGTCATCTCTGCAATTCTTGAGG 59.373 47.826 0.00 0.00 0.00 3.86
2328 2346 2.364970 TGCAATTCTTGAGGTGTTTGGG 59.635 45.455 0.00 0.00 0.00 4.12
2361 2379 6.101997 GGGGCTGTGAATAAATTTTGAGAAG 58.898 40.000 0.00 0.00 0.00 2.85
2381 2399 2.509336 CTCCGTCACGTGCATCCC 60.509 66.667 11.67 0.00 0.00 3.85
2404 2422 3.942439 GGGAGGACCGGGCTATGC 61.942 72.222 7.57 0.56 36.97 3.14
2407 2425 3.164269 AGGACCGGGCTATGCAGG 61.164 66.667 7.57 0.00 34.85 4.85
2408 2426 4.937431 GGACCGGGCTATGCAGGC 62.937 72.222 7.57 5.96 46.47 4.85
2414 2432 4.864334 GGCTATGCAGGCGTGGCT 62.864 66.667 19.07 0.00 39.06 4.75
2442 2460 1.745653 TCAATTGTCGGCACACACAAA 59.254 42.857 5.13 0.00 36.14 2.83
2445 2463 1.383523 TTGTCGGCACACACAAATCA 58.616 45.000 0.00 0.00 29.76 2.57
2448 2466 1.266718 GTCGGCACACACAAATCACAT 59.733 47.619 0.00 0.00 0.00 3.21
2467 2485 4.160252 CACATTAAAATACTTGGGGCTGCT 59.840 41.667 0.00 0.00 0.00 4.24
2468 2486 5.359576 CACATTAAAATACTTGGGGCTGCTA 59.640 40.000 0.00 0.00 0.00 3.49
2473 2491 1.952621 TACTTGGGGCTGCTACTCTT 58.047 50.000 0.00 0.00 0.00 2.85
2479 2497 2.320781 GGGGCTGCTACTCTTGATCTA 58.679 52.381 0.00 0.00 0.00 1.98
2488 2506 7.065085 GCTGCTACTCTTGATCTACAAATTGAA 59.935 37.037 0.00 0.00 38.08 2.69
2504 2522 8.853077 ACAAATTGAAGAGACATGACATTCTA 57.147 30.769 0.00 0.00 0.00 2.10
2509 2527 5.127845 TGAAGAGACATGACATTCTACCTCC 59.872 44.000 0.00 0.00 0.00 4.30
2515 2533 4.162320 ACATGACATTCTACCTCCGATTGT 59.838 41.667 0.00 0.00 0.00 2.71
2546 2564 2.490903 CAGCAAGATGAAAGGGTGGAAG 59.509 50.000 0.00 0.00 0.00 3.46
2590 2608 1.546476 CAGAGTAACCCTGACGAGCTT 59.454 52.381 0.00 0.00 33.65 3.74
2597 2615 1.418637 ACCCTGACGAGCTTGGTTTTA 59.581 47.619 5.79 0.00 0.00 1.52
2598 2616 2.158726 ACCCTGACGAGCTTGGTTTTAA 60.159 45.455 5.79 0.00 0.00 1.52
2602 2620 3.745799 TGACGAGCTTGGTTTTAATGGA 58.254 40.909 5.79 0.00 0.00 3.41
2640 2658 4.283337 TCTGTCAGTTATCCCATTACCGA 58.717 43.478 0.00 0.00 0.00 4.69
2642 2660 4.028131 TGTCAGTTATCCCATTACCGACT 58.972 43.478 0.00 0.00 0.00 4.18
2648 2666 1.817941 CCCATTACCGACTTGGGCG 60.818 63.158 0.00 0.00 43.45 6.13
2651 2669 1.153429 ATTACCGACTTGGGCGCTC 60.153 57.895 7.64 2.47 44.64 5.03
2666 2684 2.939103 GGCGCTCAAGATTATTGACAGT 59.061 45.455 7.64 0.00 0.00 3.55
2668 2686 4.752101 GGCGCTCAAGATTATTGACAGTAT 59.248 41.667 7.64 0.00 0.00 2.12
2671 2689 7.759886 GGCGCTCAAGATTATTGACAGTATATA 59.240 37.037 7.64 0.00 0.00 0.86
2691 2709 9.555727 GTATATATAGAGGCTTTGTGTGGAAAA 57.444 33.333 0.00 0.00 0.00 2.29
2708 2726 3.696548 GGAAAAGCGAGGAGGAAATCAAT 59.303 43.478 0.00 0.00 0.00 2.57
2711 2729 1.133976 AGCGAGGAGGAAATCAATGGG 60.134 52.381 0.00 0.00 0.00 4.00
2719 2737 1.063266 GGAAATCAATGGGGGCCACTA 60.063 52.381 7.61 0.00 35.80 2.74
2724 2742 2.316586 AATGGGGGCCACTACCTGG 61.317 63.158 7.61 0.00 44.08 4.45
2726 2744 3.408853 GGGGGCCACTACCTGGTC 61.409 72.222 4.16 0.00 45.10 4.02
2729 2747 2.609610 GGCCACTACCTGGTCCCA 60.610 66.667 0.63 0.00 42.99 4.37
2743 2761 1.616930 TCCCATGGGCCCGAGTTTA 60.617 57.895 27.41 1.79 34.68 2.01
2744 2762 0.991355 TCCCATGGGCCCGAGTTTAT 60.991 55.000 27.41 0.00 34.68 1.40
2747 2765 1.271379 CCATGGGCCCGAGTTTATAGG 60.271 57.143 19.37 4.07 0.00 2.57
2762 2780 4.618378 TTATAGGCCAAAAGAATGGGGT 57.382 40.909 5.01 0.00 41.01 4.95
2765 2783 0.544120 GGCCAAAAGAATGGGGTGGA 60.544 55.000 0.00 0.00 41.01 4.02
2780 2800 0.591659 GTGGACTCGGCCTTTTGAAC 59.408 55.000 0.00 0.00 0.00 3.18
2783 2803 1.002773 GGACTCGGCCTTTTGAACCTA 59.997 52.381 0.00 0.00 0.00 3.08
2787 2807 4.149598 ACTCGGCCTTTTGAACCTAAAAT 58.850 39.130 0.00 0.00 0.00 1.82
2801 2821 8.062065 TGAACCTAAAATATTTTGGAATCGCT 57.938 30.769 21.91 1.05 31.18 4.93
2805 2825 8.749354 ACCTAAAATATTTTGGAATCGCTCTTT 58.251 29.630 21.91 0.00 31.18 2.52
2836 2856 1.129917 CAGTGGCTGAGATGGGATCT 58.870 55.000 0.00 0.00 43.70 2.75
2846 2866 1.833630 AGATGGGATCTTGAGCAACGA 59.166 47.619 0.00 0.00 35.76 3.85
2848 2868 0.976641 TGGGATCTTGAGCAACGACT 59.023 50.000 0.00 0.00 0.00 4.18
2853 2873 2.613026 TCTTGAGCAACGACTTTGGA 57.387 45.000 0.00 0.00 35.51 3.53
2855 2875 3.275143 TCTTGAGCAACGACTTTGGAAA 58.725 40.909 0.00 0.00 35.51 3.13
2859 2879 1.947456 AGCAACGACTTTGGAAACTCC 59.053 47.619 0.00 0.00 35.51 3.85
2927 2947 3.782443 CGGGTGGTACTGGGGAGC 61.782 72.222 0.00 0.00 0.00 4.70
2951 2971 0.603569 ACACTGCTAGGTTCTGGACG 59.396 55.000 0.00 0.00 0.00 4.79
2956 2976 2.894126 CTGCTAGGTTCTGGACGGATAT 59.106 50.000 0.00 0.00 0.00 1.63
2997 3017 5.122554 CGTAGTATTACATTGTTGGCACCAA 59.877 40.000 0.00 0.00 0.00 3.67
3017 3037 5.931724 ACCAACTTTGTTTTCCTTTGTGAAG 59.068 36.000 0.00 0.00 0.00 3.02
3036 3056 2.457598 AGGATTCTAAGCTGTCGGTCA 58.542 47.619 0.00 0.00 0.00 4.02
3041 3061 0.457851 CTAAGCTGTCGGTCAGGGAG 59.542 60.000 4.49 0.00 43.78 4.30
3044 3064 2.997315 CTGTCGGTCAGGGAGGCA 60.997 66.667 0.00 0.00 40.23 4.75
3045 3065 2.284625 TGTCGGTCAGGGAGGCAT 60.285 61.111 0.00 0.00 0.00 4.40
3047 3067 1.450312 GTCGGTCAGGGAGGCATTG 60.450 63.158 0.00 0.00 0.00 2.82
3054 3074 1.284491 TCAGGGAGGCATTGCACAATA 59.716 47.619 11.39 0.00 0.00 1.90
3056 3076 1.285962 AGGGAGGCATTGCACAATAGT 59.714 47.619 11.39 0.00 0.00 2.12
3065 3085 5.106396 GGCATTGCACAATAGTAGATGGATC 60.106 44.000 11.39 0.00 0.00 3.36
3226 3246 8.525316 TCGGTAACAGATAGTTTTGTGATAAGA 58.475 33.333 0.00 0.00 41.64 2.10
3346 3367 2.048603 GCAAAGCGCTCCCAAGGAT 61.049 57.895 12.06 0.00 37.77 3.24
3500 3521 2.587194 CCTCTCGCAAGCATCCGG 60.587 66.667 0.00 0.00 37.18 5.14
3506 3527 0.248012 TCGCAAGCATCCGGAACTAA 59.752 50.000 9.01 0.00 37.18 2.24
3550 3571 8.766994 AACCTAACCATAGCATGAAACATATT 57.233 30.769 0.00 0.00 0.00 1.28
3623 3644 2.028112 TGTCACTCTAGCAACCCATCAC 60.028 50.000 0.00 0.00 0.00 3.06
3643 3664 8.656806 CCATCACCTACTTATTACTTCCCAATA 58.343 37.037 0.00 0.00 0.00 1.90
3794 3815 2.907892 AGACTTCTCCCATGTCCTCAA 58.092 47.619 0.00 0.00 30.79 3.02
3820 3841 7.709613 AGAACAAACGTAACTACTCACAAATCT 59.290 33.333 0.00 0.00 0.00 2.40
3832 3853 8.873830 ACTACTCACAAATCTTATTCATGTTCG 58.126 33.333 0.00 0.00 0.00 3.95
3940 3961 3.678056 TCAACACTACTAGCAACCCAG 57.322 47.619 0.00 0.00 0.00 4.45
3969 3990 5.656416 ACCAATCTGAGGTTTTGAGACAAAA 59.344 36.000 5.70 5.70 35.33 2.44
3974 3995 5.820423 TCTGAGGTTTTGAGACAAAAATCGA 59.180 36.000 10.49 0.00 35.67 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.890876 CAGGTCGGGTCAAATCAACA 58.109 50.000 0.00 0.00 0.00 3.33
15 16 0.109532 TGCAGGTCGGGTCAAATCAA 59.890 50.000 0.00 0.00 0.00 2.57
19 20 0.034337 GTACTGCAGGTCGGGTCAAA 59.966 55.000 19.93 0.00 0.00 2.69
21 22 2.632544 CGTACTGCAGGTCGGGTCA 61.633 63.158 19.93 0.00 0.00 4.02
74 75 1.056660 AGGTCCATTTGGAGTCACGT 58.943 50.000 0.00 0.00 46.49 4.49
84 85 1.247567 CGCTTCACCAAGGTCCATTT 58.752 50.000 0.00 0.00 0.00 2.32
86 87 0.981183 TACGCTTCACCAAGGTCCAT 59.019 50.000 0.00 0.00 0.00 3.41
118 123 1.472082 CCAAAGACATTGTGCCGCATA 59.528 47.619 0.00 0.00 37.32 3.14
119 124 0.244450 CCAAAGACATTGTGCCGCAT 59.756 50.000 0.00 0.00 37.32 4.73
143 148 4.115199 GCGGAGGCCATCAGGGTT 62.115 66.667 5.01 0.00 39.65 4.11
187 192 1.980232 CAGCCAGCCCATTCAGCAA 60.980 57.895 0.00 0.00 0.00 3.91
209 214 2.307363 CGTGGAGCGTTGAGTGTTT 58.693 52.632 0.00 0.00 35.54 2.83
210 215 4.027755 CGTGGAGCGTTGAGTGTT 57.972 55.556 0.00 0.00 35.54 3.32
239 244 1.987855 CGAGGGCCCAAGGTAGACA 60.988 63.158 27.56 0.00 0.00 3.41
361 366 0.252479 CAACTCCTGGAGCAGCAGAT 59.748 55.000 23.43 0.00 32.04 2.90
364 369 2.033141 GCAACTCCTGGAGCAGCA 59.967 61.111 26.63 0.00 34.44 4.41
423 428 0.179108 GAAAGGTAGACCGCGCTGAT 60.179 55.000 5.61 0.00 42.08 2.90
445 450 2.282180 GATGGTGCACCGGGTTGT 60.282 61.111 30.07 11.90 39.43 3.32
469 474 6.367149 GTGAATATCGAGCTCAATATGCTTCA 59.633 38.462 15.40 9.48 41.30 3.02
495 500 2.125912 AACCTGCTAGCGCACGAG 60.126 61.111 11.47 4.70 42.25 4.18
521 526 3.277652 GTGAAGAACCCGAACACGA 57.722 52.632 0.00 0.00 0.00 4.35
555 560 7.047891 CCCTTAGTCATTACATCAGCAAACTA 58.952 38.462 0.00 0.00 0.00 2.24
613 619 1.252175 GCCAGAGACACAGAGACTGA 58.748 55.000 5.76 0.00 35.18 3.41
657 669 7.872163 ATACATGCAACACAAAATACAACTG 57.128 32.000 0.00 0.00 0.00 3.16
784 799 4.457949 TGTAGACGAGACAGACTGCAATAA 59.542 41.667 1.25 0.00 0.00 1.40
792 807 2.110901 TCCCTGTAGACGAGACAGAC 57.889 55.000 14.72 0.00 46.01 3.51
796 811 2.920524 TCTCATCCCTGTAGACGAGAC 58.079 52.381 0.00 0.00 0.00 3.36
799 814 2.959030 CCATTCTCATCCCTGTAGACGA 59.041 50.000 0.00 0.00 0.00 4.20
810 825 1.072159 CCGCCTCCCCATTCTCATC 59.928 63.158 0.00 0.00 0.00 2.92
811 826 0.769776 ATCCGCCTCCCCATTCTCAT 60.770 55.000 0.00 0.00 0.00 2.90
812 827 1.384502 ATCCGCCTCCCCATTCTCA 60.385 57.895 0.00 0.00 0.00 3.27
813 828 1.072159 CATCCGCCTCCCCATTCTC 59.928 63.158 0.00 0.00 0.00 2.87
814 829 1.694169 ACATCCGCCTCCCCATTCT 60.694 57.895 0.00 0.00 0.00 2.40
816 831 2.757124 GGACATCCGCCTCCCCATT 61.757 63.158 0.00 0.00 0.00 3.16
817 832 3.171388 GGACATCCGCCTCCCCAT 61.171 66.667 0.00 0.00 0.00 4.00
818 833 2.613576 TATGGACATCCGCCTCCCCA 62.614 60.000 0.00 0.00 39.43 4.96
819 834 1.201429 ATATGGACATCCGCCTCCCC 61.201 60.000 0.00 0.00 39.43 4.81
820 835 0.693049 AATATGGACATCCGCCTCCC 59.307 55.000 0.00 0.00 39.43 4.30
821 836 1.611673 CCAATATGGACATCCGCCTCC 60.612 57.143 0.00 0.00 40.96 4.30
822 837 1.611673 CCCAATATGGACATCCGCCTC 60.612 57.143 0.00 0.00 40.96 4.70
823 838 0.401738 CCCAATATGGACATCCGCCT 59.598 55.000 0.00 0.00 40.96 5.52
824 839 1.244019 GCCCAATATGGACATCCGCC 61.244 60.000 0.00 0.00 40.96 6.13
825 840 1.244019 GGCCCAATATGGACATCCGC 61.244 60.000 0.00 0.00 40.96 5.54
826 841 0.955428 CGGCCCAATATGGACATCCG 60.955 60.000 0.00 2.09 40.96 4.18
827 842 0.609131 CCGGCCCAATATGGACATCC 60.609 60.000 0.00 0.00 40.96 3.51
828 843 1.244019 GCCGGCCCAATATGGACATC 61.244 60.000 18.11 0.00 40.96 3.06
829 844 1.228552 GCCGGCCCAATATGGACAT 60.229 57.895 18.11 0.00 40.96 3.06
830 845 1.932156 AAGCCGGCCCAATATGGACA 61.932 55.000 26.15 0.00 40.96 4.02
831 846 1.152756 AAGCCGGCCCAATATGGAC 60.153 57.895 26.15 0.00 40.96 4.02
832 847 1.152777 CAAGCCGGCCCAATATGGA 60.153 57.895 26.15 0.00 40.96 3.41
833 848 2.202395 CCAAGCCGGCCCAATATGG 61.202 63.158 26.15 17.74 37.25 2.74
834 849 1.455587 ACCAAGCCGGCCCAATATG 60.456 57.895 26.15 12.58 39.03 1.78
835 850 1.455587 CACCAAGCCGGCCCAATAT 60.456 57.895 26.15 0.00 39.03 1.28
836 851 2.044451 CACCAAGCCGGCCCAATA 60.044 61.111 26.15 0.00 39.03 1.90
837 852 4.299796 ACACCAAGCCGGCCCAAT 62.300 61.111 26.15 0.00 39.03 3.16
838 853 4.966787 GACACCAAGCCGGCCCAA 62.967 66.667 26.15 0.00 39.03 4.12
840 855 4.966787 TTGACACCAAGCCGGCCC 62.967 66.667 26.15 4.28 39.03 5.80
841 856 3.365265 CTTGACACCAAGCCGGCC 61.365 66.667 26.15 6.18 42.72 6.13
842 857 3.365265 CCTTGACACCAAGCCGGC 61.365 66.667 21.89 21.89 46.42 6.13
843 858 3.365265 GCCTTGACACCAAGCCGG 61.365 66.667 0.00 0.00 46.42 6.13
844 859 3.726517 CGCCTTGACACCAAGCCG 61.727 66.667 0.00 0.00 46.42 5.52
845 860 4.043200 GCGCCTTGACACCAAGCC 62.043 66.667 0.00 0.00 46.42 4.35
846 861 4.043200 GGCGCCTTGACACCAAGC 62.043 66.667 22.15 0.00 46.42 4.01
848 863 3.723097 TTGGGCGCCTTGACACCAA 62.723 57.895 28.56 17.04 38.76 3.67
849 864 4.196778 TTGGGCGCCTTGACACCA 62.197 61.111 28.56 11.19 0.00 4.17
850 865 3.670377 GTTGGGCGCCTTGACACC 61.670 66.667 28.56 8.18 0.00 4.16
851 866 4.025401 CGTTGGGCGCCTTGACAC 62.025 66.667 28.56 14.37 0.00 3.67
872 887 2.130073 GACAAGTTGCGGTTGAGGCC 62.130 60.000 1.81 0.00 0.00 5.19
873 888 1.282875 GACAAGTTGCGGTTGAGGC 59.717 57.895 1.81 0.00 0.00 4.70
874 889 1.841663 CGGACAAGTTGCGGTTGAGG 61.842 60.000 1.81 0.00 34.92 3.86
875 890 1.569493 CGGACAAGTTGCGGTTGAG 59.431 57.895 1.81 0.00 34.92 3.02
876 891 2.539338 GCGGACAAGTTGCGGTTGA 61.539 57.895 1.81 0.00 39.95 3.18
877 892 2.051345 GCGGACAAGTTGCGGTTG 60.051 61.111 1.81 0.00 39.95 3.77
882 897 1.373748 TCTACCGCGGACAAGTTGC 60.374 57.895 35.90 0.00 0.00 4.17
883 898 0.319211 TGTCTACCGCGGACAAGTTG 60.319 55.000 35.90 10.26 40.21 3.16
884 899 0.319297 GTGTCTACCGCGGACAAGTT 60.319 55.000 35.90 11.18 43.90 2.66
885 900 1.288127 GTGTCTACCGCGGACAAGT 59.712 57.895 35.90 12.08 43.90 3.16
886 901 0.732880 CTGTGTCTACCGCGGACAAG 60.733 60.000 35.90 24.52 43.90 3.16
887 902 1.287815 CTGTGTCTACCGCGGACAA 59.712 57.895 35.90 15.87 43.90 3.18
888 903 2.632544 CCTGTGTCTACCGCGGACA 61.633 63.158 35.90 23.68 40.78 4.02
889 904 2.181021 CCTGTGTCTACCGCGGAC 59.819 66.667 35.90 20.98 31.13 4.79
890 905 3.066190 CCCTGTGTCTACCGCGGA 61.066 66.667 35.90 14.96 31.13 5.54
891 906 4.143333 CCCCTGTGTCTACCGCGG 62.143 72.222 26.86 26.86 0.00 6.46
892 907 2.162338 TTTCCCCTGTGTCTACCGCG 62.162 60.000 0.00 0.00 0.00 6.46
893 908 0.035739 TTTTCCCCTGTGTCTACCGC 59.964 55.000 0.00 0.00 0.00 5.68
894 909 2.781681 ATTTTCCCCTGTGTCTACCG 57.218 50.000 0.00 0.00 0.00 4.02
895 910 4.563140 TGTATTTTCCCCTGTGTCTACC 57.437 45.455 0.00 0.00 0.00 3.18
896 911 6.177610 TGATTGTATTTTCCCCTGTGTCTAC 58.822 40.000 0.00 0.00 0.00 2.59
897 912 6.381498 TGATTGTATTTTCCCCTGTGTCTA 57.619 37.500 0.00 0.00 0.00 2.59
898 913 5.255397 TGATTGTATTTTCCCCTGTGTCT 57.745 39.130 0.00 0.00 0.00 3.41
899 914 5.975693 TTGATTGTATTTTCCCCTGTGTC 57.024 39.130 0.00 0.00 0.00 3.67
900 915 6.739331 TTTTGATTGTATTTTCCCCTGTGT 57.261 33.333 0.00 0.00 0.00 3.72
901 916 5.639082 GCTTTTGATTGTATTTTCCCCTGTG 59.361 40.000 0.00 0.00 0.00 3.66
902 917 5.543790 AGCTTTTGATTGTATTTTCCCCTGT 59.456 36.000 0.00 0.00 0.00 4.00
903 918 6.041423 AGCTTTTGATTGTATTTTCCCCTG 57.959 37.500 0.00 0.00 0.00 4.45
904 919 7.790782 TTAGCTTTTGATTGTATTTTCCCCT 57.209 32.000 0.00 0.00 0.00 4.79
905 920 8.840833 TTTTAGCTTTTGATTGTATTTTCCCC 57.159 30.769 0.00 0.00 0.00 4.81
959 974 9.765795 TTGACGGTGGAATTTTAAATATGTTTT 57.234 25.926 0.00 0.00 0.00 2.43
960 975 9.765795 TTTGACGGTGGAATTTTAAATATGTTT 57.234 25.926 0.00 0.00 0.00 2.83
961 976 9.418045 CTTTGACGGTGGAATTTTAAATATGTT 57.582 29.630 0.00 0.00 0.00 2.71
962 977 8.581578 ACTTTGACGGTGGAATTTTAAATATGT 58.418 29.630 0.00 0.00 0.00 2.29
963 978 8.859156 CACTTTGACGGTGGAATTTTAAATATG 58.141 33.333 0.00 0.00 0.00 1.78
964 979 7.544217 GCACTTTGACGGTGGAATTTTAAATAT 59.456 33.333 0.00 0.00 35.47 1.28
965 980 6.864165 GCACTTTGACGGTGGAATTTTAAATA 59.136 34.615 0.00 0.00 35.47 1.40
966 981 5.694458 GCACTTTGACGGTGGAATTTTAAAT 59.306 36.000 0.00 0.00 35.47 1.40
967 982 5.044558 GCACTTTGACGGTGGAATTTTAAA 58.955 37.500 0.00 0.00 35.47 1.52
968 983 4.500035 GGCACTTTGACGGTGGAATTTTAA 60.500 41.667 0.00 0.00 35.47 1.52
969 984 3.004944 GGCACTTTGACGGTGGAATTTTA 59.995 43.478 0.00 0.00 35.47 1.52
970 985 2.223947 GGCACTTTGACGGTGGAATTTT 60.224 45.455 0.00 0.00 35.47 1.82
971 986 1.339929 GGCACTTTGACGGTGGAATTT 59.660 47.619 0.00 0.00 35.47 1.82
972 987 0.958822 GGCACTTTGACGGTGGAATT 59.041 50.000 0.00 0.00 35.47 2.17
973 988 2.641197 GGCACTTTGACGGTGGAAT 58.359 52.632 0.00 0.00 35.47 3.01
974 989 4.150994 GGCACTTTGACGGTGGAA 57.849 55.556 0.00 0.00 35.47 3.53
981 996 1.007387 CCTTTGGCGGCACTTTGAC 60.007 57.895 12.92 0.00 0.00 3.18
982 997 1.152860 TCCTTTGGCGGCACTTTGA 60.153 52.632 12.92 3.10 0.00 2.69
983 998 1.286880 CTCCTTTGGCGGCACTTTG 59.713 57.895 12.92 0.28 0.00 2.77
984 999 1.903404 CCTCCTTTGGCGGCACTTT 60.903 57.895 12.92 0.00 0.00 2.66
985 1000 2.282462 CCTCCTTTGGCGGCACTT 60.282 61.111 12.92 0.00 0.00 3.16
986 1001 4.351054 CCCTCCTTTGGCGGCACT 62.351 66.667 12.92 0.00 0.00 4.40
987 1002 4.660938 ACCCTCCTTTGGCGGCAC 62.661 66.667 12.92 0.00 0.00 5.01
988 1003 3.897122 AACCCTCCTTTGGCGGCA 61.897 61.111 7.97 7.97 0.00 5.69
989 1004 3.373565 CAACCCTCCTTTGGCGGC 61.374 66.667 0.00 0.00 0.00 6.53
990 1005 1.675641 CTCAACCCTCCTTTGGCGG 60.676 63.158 0.00 0.00 0.00 6.13
991 1006 0.674895 CTCTCAACCCTCCTTTGGCG 60.675 60.000 0.00 0.00 0.00 5.69
992 1007 0.322906 CCTCTCAACCCTCCTTTGGC 60.323 60.000 0.00 0.00 0.00 4.52
993 1008 1.280421 CTCCTCTCAACCCTCCTTTGG 59.720 57.143 0.00 0.00 0.00 3.28
994 1009 1.280421 CCTCCTCTCAACCCTCCTTTG 59.720 57.143 0.00 0.00 0.00 2.77
1003 1018 1.978580 TGGAAACCTCCTCCTCTCAAC 59.021 52.381 0.00 0.00 42.94 3.18
1007 1022 2.384029 AGTACTGGAAACCTCCTCCTCT 59.616 50.000 0.00 0.00 42.94 3.69
1028 1043 5.895534 AGTACTTAGAATGTCCATCGGGTTA 59.104 40.000 0.00 0.00 34.93 2.85
1031 1046 4.939052 AGTACTTAGAATGTCCATCGGG 57.061 45.455 0.00 0.00 0.00 5.14
1038 1053 6.472808 CGTTGGAGCTTAGTACTTAGAATGTC 59.527 42.308 12.98 3.42 0.00 3.06
1040 1055 5.232414 GCGTTGGAGCTTAGTACTTAGAATG 59.768 44.000 12.98 4.84 0.00 2.67
1041 1056 5.105473 TGCGTTGGAGCTTAGTACTTAGAAT 60.105 40.000 12.98 0.17 38.13 2.40
1044 1059 3.858238 GTGCGTTGGAGCTTAGTACTTAG 59.142 47.826 0.00 1.78 38.13 2.18
1047 1062 1.067071 GGTGCGTTGGAGCTTAGTACT 60.067 52.381 0.00 0.00 38.13 2.73
1067 1082 2.680913 CCTCCGAAGTGCTTTGGCG 61.681 63.158 12.30 7.17 42.61 5.69
1070 1085 1.237285 CCCACCTCCGAAGTGCTTTG 61.237 60.000 0.00 0.00 33.75 2.77
1073 1088 3.322466 CCCCACCTCCGAAGTGCT 61.322 66.667 0.00 0.00 33.75 4.40
1082 1097 2.231380 TTTCCTCTGGCCCCACCTC 61.231 63.158 0.00 0.00 40.22 3.85
1085 1100 1.303643 CTGTTTCCTCTGGCCCCAC 60.304 63.158 0.00 0.00 0.00 4.61
1091 1106 0.397941 TGGCACTCTGTTTCCTCTGG 59.602 55.000 0.00 0.00 0.00 3.86
1092 1107 2.082231 CATGGCACTCTGTTTCCTCTG 58.918 52.381 0.00 0.00 0.00 3.35
1100 1115 2.230508 CTGCAAATTCATGGCACTCTGT 59.769 45.455 0.00 0.00 33.34 3.41
1103 1118 3.308438 AACTGCAAATTCATGGCACTC 57.692 42.857 0.00 0.00 33.34 3.51
1119 1134 3.059884 TCTCGTTAGCTGCTTGAAACTG 58.940 45.455 7.79 3.73 0.00 3.16
1127 1142 4.142071 TGAAGAATGATCTCGTTAGCTGCT 60.142 41.667 7.57 7.57 33.77 4.24
1128 1143 4.115516 TGAAGAATGATCTCGTTAGCTGC 58.884 43.478 0.00 0.00 33.77 5.25
1129 1144 6.144241 CAGATGAAGAATGATCTCGTTAGCTG 59.856 42.308 0.00 0.00 33.77 4.24
1150 1165 2.224475 GCCTCATGTGCTGTATCCAGAT 60.224 50.000 0.00 0.00 41.50 2.90
1157 1172 2.426522 GTTCTTGCCTCATGTGCTGTA 58.573 47.619 10.49 0.00 0.00 2.74
1166 1181 1.210478 GCAGATAGGGTTCTTGCCTCA 59.790 52.381 0.00 0.00 0.00 3.86
1170 1185 2.559440 CTGAGCAGATAGGGTTCTTGC 58.441 52.381 0.00 0.00 0.00 4.01
1176 1191 1.856259 TCTCTCCTGAGCAGATAGGGT 59.144 52.381 0.00 0.00 40.03 4.34
1177 1192 2.673775 TCTCTCCTGAGCAGATAGGG 57.326 55.000 0.00 0.00 40.03 3.53
1185 1200 3.333804 CCTTGAGTTTTCTCTCCTGAGC 58.666 50.000 0.00 0.00 46.30 4.26
1187 1202 2.039084 GCCCTTGAGTTTTCTCTCCTGA 59.961 50.000 0.00 0.00 46.30 3.86
1188 1203 2.039613 AGCCCTTGAGTTTTCTCTCCTG 59.960 50.000 0.00 0.00 46.30 3.86
1228 1243 2.123982 CCAAGGATGCCAGAGCCC 60.124 66.667 0.00 0.00 38.69 5.19
1232 1247 1.273495 ACTCTCTCCAAGGATGCCAGA 60.273 52.381 0.00 0.00 0.00 3.86
1254 1269 3.384668 TCTTTGCTCTTTGTCTCAGTCG 58.615 45.455 0.00 0.00 0.00 4.18
1256 1271 6.763355 TCTAATCTTTGCTCTTTGTCTCAGT 58.237 36.000 0.00 0.00 0.00 3.41
1258 1273 6.997655 TCTCTAATCTTTGCTCTTTGTCTCA 58.002 36.000 0.00 0.00 0.00 3.27
1274 1289 6.739331 TCTCCTTCCCAAAGATCTCTAATC 57.261 41.667 0.00 0.00 34.14 1.75
1277 1292 4.346418 GCATCTCCTTCCCAAAGATCTCTA 59.654 45.833 0.00 0.00 34.14 2.43
1286 1301 3.587061 TCAAGTTAGCATCTCCTTCCCAA 59.413 43.478 0.00 0.00 0.00 4.12
1287 1302 3.181329 TCAAGTTAGCATCTCCTTCCCA 58.819 45.455 0.00 0.00 0.00 4.37
1328 1343 1.271652 TGTTTCCTTCTGCGCCCATTA 60.272 47.619 4.18 0.00 0.00 1.90
1331 1346 0.960364 GATGTTTCCTTCTGCGCCCA 60.960 55.000 4.18 0.00 0.00 5.36
1346 1361 2.968574 CTGCAGGTAGGGTATGAGATGT 59.031 50.000 5.57 0.00 0.00 3.06
1348 1363 3.336509 ACTGCAGGTAGGGTATGAGAT 57.663 47.619 19.93 0.00 0.00 2.75
1352 1367 2.238646 TCCAAACTGCAGGTAGGGTATG 59.761 50.000 19.93 5.18 0.00 2.39
1355 1370 0.693049 CTCCAAACTGCAGGTAGGGT 59.307 55.000 19.93 0.00 0.00 4.34
1358 1373 2.069273 CGTTCTCCAAACTGCAGGTAG 58.931 52.381 19.93 6.13 0.00 3.18
1360 1375 1.166531 GCGTTCTCCAAACTGCAGGT 61.167 55.000 19.93 9.19 0.00 4.00
1362 1377 0.877071 ATGCGTTCTCCAAACTGCAG 59.123 50.000 13.48 13.48 34.89 4.41
1369 1384 1.031571 GGATGCCATGCGTTCTCCAA 61.032 55.000 0.00 0.00 0.00 3.53
1373 1388 1.153086 GGAGGATGCCATGCGTTCT 60.153 57.895 0.00 0.00 35.89 3.01
1374 1389 0.820891 ATGGAGGATGCCATGCGTTC 60.821 55.000 0.00 0.00 46.62 3.95
1376 1391 2.921435 ATGGAGGATGCCATGCGT 59.079 55.556 0.00 0.00 46.62 5.24
1409 1424 6.514012 TCCCTAAAGAAATCATATGCCAGA 57.486 37.500 0.00 0.00 0.00 3.86
1410 1425 7.361542 CGAATCCCTAAAGAAATCATATGCCAG 60.362 40.741 0.00 0.00 0.00 4.85
1415 1430 7.766278 CCGATCGAATCCCTAAAGAAATCATAT 59.234 37.037 18.66 0.00 0.00 1.78
1416 1431 7.097192 CCGATCGAATCCCTAAAGAAATCATA 58.903 38.462 18.66 0.00 0.00 2.15
1418 1433 5.297547 CCGATCGAATCCCTAAAGAAATCA 58.702 41.667 18.66 0.00 0.00 2.57
1427 1442 0.541296 GGACCCCGATCGAATCCCTA 60.541 60.000 18.66 0.00 0.00 3.53
1429 1444 2.741747 GGACCCCGATCGAATCCC 59.258 66.667 18.66 8.67 0.00 3.85
1433 1448 2.983791 GTTGGGACCCCGATCGAA 59.016 61.111 18.66 0.00 39.42 3.71
1469 1484 0.815615 GGCCCAACCGCTCTAGATTG 60.816 60.000 0.00 0.00 0.00 2.67
1472 1487 1.612442 AAGGCCCAACCGCTCTAGA 60.612 57.895 0.00 0.00 46.52 2.43
1475 1490 4.351054 CCAAGGCCCAACCGCTCT 62.351 66.667 0.00 0.00 46.52 4.09
1479 1494 0.034477 ATCTTACCAAGGCCCAACCG 60.034 55.000 0.00 0.00 46.52 4.44
1481 1496 4.439253 AGATATCTTACCAAGGCCCAAC 57.561 45.455 0.00 0.00 0.00 3.77
1501 1516 2.279935 AGCCTAGGAGGATGTCGTAG 57.720 55.000 14.75 0.00 41.50 3.51
1518 1533 0.967887 GAGAAAGGGGCCTCCAAAGC 60.968 60.000 0.00 0.00 38.24 3.51
1519 1534 0.701147 AGAGAAAGGGGCCTCCAAAG 59.299 55.000 0.00 0.00 38.24 2.77
1520 1535 1.916181 CTAGAGAAAGGGGCCTCCAAA 59.084 52.381 0.00 0.00 38.24 3.28
1521 1536 1.080498 TCTAGAGAAAGGGGCCTCCAA 59.920 52.381 0.00 0.00 38.24 3.53
1534 1549 5.431731 ACCTTCTTGATCTCCTCTCTAGAGA 59.568 44.000 21.16 21.16 44.74 3.10
1535 1550 5.694995 ACCTTCTTGATCTCCTCTCTAGAG 58.305 45.833 13.98 13.98 41.71 2.43
1536 1551 5.725551 ACCTTCTTGATCTCCTCTCTAGA 57.274 43.478 0.00 0.00 0.00 2.43
1537 1552 6.486657 CACTACCTTCTTGATCTCCTCTCTAG 59.513 46.154 0.00 0.00 0.00 2.43
1538 1553 6.361433 CACTACCTTCTTGATCTCCTCTCTA 58.639 44.000 0.00 0.00 0.00 2.43
1539 1554 5.200483 CACTACCTTCTTGATCTCCTCTCT 58.800 45.833 0.00 0.00 0.00 3.10
1540 1555 4.340950 CCACTACCTTCTTGATCTCCTCTC 59.659 50.000 0.00 0.00 0.00 3.20
1541 1556 4.017037 TCCACTACCTTCTTGATCTCCTCT 60.017 45.833 0.00 0.00 0.00 3.69
1542 1557 4.098807 GTCCACTACCTTCTTGATCTCCTC 59.901 50.000 0.00 0.00 0.00 3.71
1543 1558 4.027437 GTCCACTACCTTCTTGATCTCCT 58.973 47.826 0.00 0.00 0.00 3.69
1544 1559 3.181485 CGTCCACTACCTTCTTGATCTCC 60.181 52.174 0.00 0.00 0.00 3.71
1545 1560 3.695060 TCGTCCACTACCTTCTTGATCTC 59.305 47.826 0.00 0.00 0.00 2.75
1546 1561 3.698289 TCGTCCACTACCTTCTTGATCT 58.302 45.455 0.00 0.00 0.00 2.75
1547 1562 4.657436 ATCGTCCACTACCTTCTTGATC 57.343 45.455 0.00 0.00 0.00 2.92
1548 1563 6.239345 GGAATATCGTCCACTACCTTCTTGAT 60.239 42.308 0.00 0.00 37.65 2.57
1549 1564 5.068723 GGAATATCGTCCACTACCTTCTTGA 59.931 44.000 0.00 0.00 37.65 3.02
1550 1565 5.069251 AGGAATATCGTCCACTACCTTCTTG 59.931 44.000 0.00 0.00 40.48 3.02
1551 1566 5.209659 AGGAATATCGTCCACTACCTTCTT 58.790 41.667 0.00 0.00 40.48 2.52
1552 1567 4.805744 AGGAATATCGTCCACTACCTTCT 58.194 43.478 0.00 0.00 40.48 2.85
1553 1568 5.302313 AGAAGGAATATCGTCCACTACCTTC 59.698 44.000 0.00 0.00 46.88 3.46
1554 1569 5.069251 CAGAAGGAATATCGTCCACTACCTT 59.931 44.000 0.00 0.00 40.48 3.50
1555 1570 4.585162 CAGAAGGAATATCGTCCACTACCT 59.415 45.833 0.00 0.00 40.48 3.08
1556 1571 4.583489 TCAGAAGGAATATCGTCCACTACC 59.417 45.833 0.00 0.00 40.48 3.18
1557 1572 5.507650 GGTCAGAAGGAATATCGTCCACTAC 60.508 48.000 0.00 0.00 40.48 2.73
1558 1573 4.583489 GGTCAGAAGGAATATCGTCCACTA 59.417 45.833 0.00 0.00 40.48 2.74
1559 1574 3.385111 GGTCAGAAGGAATATCGTCCACT 59.615 47.826 0.00 0.00 40.48 4.00
1560 1575 3.718815 GGTCAGAAGGAATATCGTCCAC 58.281 50.000 0.00 0.00 40.48 4.02
1561 1576 2.361119 CGGTCAGAAGGAATATCGTCCA 59.639 50.000 0.00 0.00 40.48 4.02
1562 1577 2.288273 CCGGTCAGAAGGAATATCGTCC 60.288 54.545 0.00 0.00 38.03 4.79
1563 1578 2.288273 CCCGGTCAGAAGGAATATCGTC 60.288 54.545 0.00 0.00 0.00 4.20
1564 1579 1.687123 CCCGGTCAGAAGGAATATCGT 59.313 52.381 0.00 0.00 0.00 3.73
1565 1580 1.605712 GCCCGGTCAGAAGGAATATCG 60.606 57.143 0.00 0.00 0.00 2.92
1566 1581 1.270893 GGCCCGGTCAGAAGGAATATC 60.271 57.143 0.00 0.00 0.00 1.63
1567 1582 0.765510 GGCCCGGTCAGAAGGAATAT 59.234 55.000 0.00 0.00 0.00 1.28
1568 1583 1.342672 GGGCCCGGTCAGAAGGAATA 61.343 60.000 5.69 0.00 0.00 1.75
1569 1584 2.680370 GGGCCCGGTCAGAAGGAAT 61.680 63.158 5.69 0.00 0.00 3.01
1570 1585 3.327404 GGGCCCGGTCAGAAGGAA 61.327 66.667 5.69 0.00 0.00 3.36
1573 1588 4.101448 CAGGGGCCCGGTCAGAAG 62.101 72.222 18.95 0.00 0.00 2.85
1582 1597 4.463788 CATTGGGTCCAGGGGCCC 62.464 72.222 21.46 21.46 45.04 5.80
1583 1598 4.463788 CCATTGGGTCCAGGGGCC 62.464 72.222 0.00 0.00 0.00 5.80
1584 1599 4.463788 CCCATTGGGTCCAGGGGC 62.464 72.222 14.10 0.00 38.25 5.80
1594 1609 0.742990 TCGCGCTAAGAACCCATTGG 60.743 55.000 5.56 0.00 37.80 3.16
1595 1610 1.083489 TTCGCGCTAAGAACCCATTG 58.917 50.000 5.56 0.00 0.00 2.82
1596 1611 1.670811 CATTCGCGCTAAGAACCCATT 59.329 47.619 5.56 0.00 0.00 3.16
1597 1612 1.134521 TCATTCGCGCTAAGAACCCAT 60.135 47.619 5.56 0.00 0.00 4.00
1598 1613 0.248012 TCATTCGCGCTAAGAACCCA 59.752 50.000 5.56 0.00 0.00 4.51
1599 1614 1.583054 ATCATTCGCGCTAAGAACCC 58.417 50.000 5.56 0.00 0.00 4.11
1600 1615 3.063452 TGAAATCATTCGCGCTAAGAACC 59.937 43.478 5.56 0.00 38.46 3.62
1601 1616 4.258935 TGAAATCATTCGCGCTAAGAAC 57.741 40.909 5.56 0.00 38.46 3.01
1602 1617 4.260743 CCATGAAATCATTCGCGCTAAGAA 60.261 41.667 5.56 1.57 38.46 2.52
1603 1618 3.248363 CCATGAAATCATTCGCGCTAAGA 59.752 43.478 5.56 1.00 38.46 2.10
1604 1619 3.548587 CCATGAAATCATTCGCGCTAAG 58.451 45.455 5.56 0.00 38.46 2.18
1605 1620 2.286950 GCCATGAAATCATTCGCGCTAA 60.287 45.455 5.56 0.00 38.46 3.09
1606 1621 1.264020 GCCATGAAATCATTCGCGCTA 59.736 47.619 5.56 0.00 38.46 4.26
1607 1622 0.029834 GCCATGAAATCATTCGCGCT 59.970 50.000 5.56 0.00 38.46 5.92
1608 1623 1.264141 CGCCATGAAATCATTCGCGC 61.264 55.000 16.87 0.00 42.05 6.86
1613 1628 2.363038 CCATCACCGCCATGAAATCATT 59.637 45.455 0.00 0.00 33.61 2.57
1618 1633 0.394216 CCTCCATCACCGCCATGAAA 60.394 55.000 0.00 0.00 30.82 2.69
1621 1636 2.903855 GCCTCCATCACCGCCATG 60.904 66.667 0.00 0.00 0.00 3.66
1627 1642 0.106669 GGTAAAGGGCCTCCATCACC 60.107 60.000 6.46 6.36 34.83 4.02
1630 1645 1.479389 CCATGGTAAAGGGCCTCCATC 60.479 57.143 19.59 6.48 38.43 3.51
1643 1658 2.551270 AGAGGAGAAACAGCCATGGTA 58.449 47.619 14.67 0.00 0.00 3.25
1648 1663 2.439507 ACTGAAAGAGGAGAAACAGCCA 59.560 45.455 0.00 0.00 37.43 4.75
1663 1678 3.020984 GGAAGTGTTCAACCCACTGAAA 58.979 45.455 0.00 0.00 42.17 2.69
1673 1688 2.548057 GCGTGAGAATGGAAGTGTTCAA 59.452 45.455 0.00 0.00 0.00 2.69
1705 1720 1.015868 GCTGCATCAAGCTCTCCTTC 58.984 55.000 0.00 0.00 45.94 3.46
1714 1729 1.381928 AATCCGCCAGCTGCATCAAG 61.382 55.000 8.66 0.00 41.33 3.02
1716 1731 1.378882 GAAATCCGCCAGCTGCATCA 61.379 55.000 8.66 0.00 41.33 3.07
1726 1741 0.108585 TGATAGGCCTGAAATCCGCC 59.891 55.000 17.99 0.00 43.35 6.13
1727 1742 1.967319 TTGATAGGCCTGAAATCCGC 58.033 50.000 17.99 0.00 0.00 5.54
1735 1750 5.045359 TCCATGGATTAGATTGATAGGCCTG 60.045 44.000 17.99 0.00 0.00 4.85
1753 1768 1.138568 AGATCTTGGCCTCTCCATGG 58.861 55.000 4.97 4.97 46.04 3.66
1761 1776 1.457346 CTTTGCGAAGATCTTGGCCT 58.543 50.000 31.63 1.56 42.50 5.19
1775 1790 1.006922 GAGCTGCCAACACCTTTGC 60.007 57.895 0.00 0.00 0.00 3.68
1790 1805 4.410743 GCAACAGGCCAAGCGAGC 62.411 66.667 5.01 0.00 36.11 5.03
1791 1806 1.375908 TAGCAACAGGCCAAGCGAG 60.376 57.895 5.01 0.00 46.50 5.03
1809 1825 1.771255 GGCTCTGGATATGTTCCTGGT 59.229 52.381 0.00 0.00 45.68 4.00
1817 1833 1.270732 GCACTCTGGGCTCTGGATATG 60.271 57.143 0.00 0.00 0.00 1.78
1818 1834 1.055040 GCACTCTGGGCTCTGGATAT 58.945 55.000 0.00 0.00 0.00 1.63
1864 1881 9.033481 CAGCATTCTGAACAAACTTTAAATTCA 57.967 29.630 0.00 2.21 42.95 2.57
1871 1888 3.132646 TGGCAGCATTCTGAACAAACTTT 59.867 39.130 0.00 0.00 42.95 2.66
1889 1906 3.243816 TGGTGCAGAGCTCTGGCA 61.244 61.111 37.86 31.76 43.94 4.92
1950 1967 6.669125 TTCCCAAGACAATGAATCAAATGT 57.331 33.333 4.98 4.98 0.00 2.71
1978 1995 2.827322 TGACCTGCAAAATCTCCAATGG 59.173 45.455 0.00 0.00 0.00 3.16
1980 1997 4.015084 CTCTGACCTGCAAAATCTCCAAT 58.985 43.478 0.00 0.00 0.00 3.16
1989 2006 2.031120 CCAAAACCTCTGACCTGCAAA 58.969 47.619 0.00 0.00 0.00 3.68
2022 2039 2.028112 CAGAAGACCACGGATCCAAGAA 60.028 50.000 13.41 0.00 0.00 2.52
2025 2042 1.550524 CTCAGAAGACCACGGATCCAA 59.449 52.381 13.41 0.00 0.00 3.53
2031 2048 1.153939 CGAGCTCAGAAGACCACGG 60.154 63.158 15.40 0.00 0.00 4.94
2032 2049 0.455295 GTCGAGCTCAGAAGACCACG 60.455 60.000 15.40 0.00 0.00 4.94
2045 2062 3.213402 CCGAGGAGGAGGTCGAGC 61.213 72.222 6.48 6.48 45.00 5.03
2049 2066 0.323542 TGAGAACCGAGGAGGAGGTC 60.324 60.000 0.00 0.00 45.00 3.85
2050 2067 0.336737 ATGAGAACCGAGGAGGAGGT 59.663 55.000 0.00 0.00 45.00 3.85
2085 2102 0.544833 TACCCAGGGTGAAAGGCGTA 60.545 55.000 23.01 0.00 36.19 4.42
2103 2121 1.079825 TCACCCTGCCTTACTCCCTTA 59.920 52.381 0.00 0.00 0.00 2.69
2121 2139 1.077285 TGCCGACGATAGAGGGTCA 60.077 57.895 0.00 0.00 37.75 4.02
2128 2146 2.292016 AGATGAAGAGTGCCGACGATAG 59.708 50.000 0.00 0.00 46.19 2.08
2134 2152 1.137086 GGCTAAGATGAAGAGTGCCGA 59.863 52.381 0.00 0.00 0.00 5.54
2151 2169 1.340248 GCTTGCAATGCATCTATGGCT 59.660 47.619 9.39 0.00 38.76 4.75
2178 2196 4.396166 AGATTTTGACTCGTAGCCCAATTG 59.604 41.667 0.00 0.00 0.00 2.32
2180 2198 3.941483 CAGATTTTGACTCGTAGCCCAAT 59.059 43.478 0.00 0.00 0.00 3.16
2188 2206 1.160137 GCCAGCAGATTTTGACTCGT 58.840 50.000 0.00 0.00 0.00 4.18
2189 2207 1.446907 AGCCAGCAGATTTTGACTCG 58.553 50.000 0.00 0.00 0.00 4.18
2207 2225 4.705507 TCCTACTGTCTACACCAAGCTTAG 59.294 45.833 0.00 0.00 0.00 2.18
2208 2226 4.461781 GTCCTACTGTCTACACCAAGCTTA 59.538 45.833 0.00 0.00 0.00 3.09
2211 2229 2.561419 TGTCCTACTGTCTACACCAAGC 59.439 50.000 0.00 0.00 0.00 4.01
2220 2238 0.323542 CCCTCGGTGTCCTACTGTCT 60.324 60.000 0.00 0.00 36.98 3.41
2224 2242 2.363925 GGCCCTCGGTGTCCTACT 60.364 66.667 0.00 0.00 0.00 2.57
2226 2244 1.284111 TAGAGGCCCTCGGTGTCCTA 61.284 60.000 4.80 0.00 35.36 2.94
2229 2247 0.468400 AGATAGAGGCCCTCGGTGTC 60.468 60.000 4.80 2.60 35.36 3.67
2235 2253 3.914426 TTGTCAAAGATAGAGGCCCTC 57.086 47.619 1.26 1.26 0.00 4.30
2252 2270 5.732247 GCGAAAAATATAACCGCCTCATTGT 60.732 40.000 0.00 0.00 39.97 2.71
2253 2271 4.675114 GCGAAAAATATAACCGCCTCATTG 59.325 41.667 0.00 0.00 39.97 2.82
2254 2272 4.553938 CGCGAAAAATATAACCGCCTCATT 60.554 41.667 0.00 0.00 42.50 2.57
2259 2277 1.391787 GCGCGAAAAATATAACCGCC 58.608 50.000 12.10 0.00 42.50 6.13
2268 2286 2.258286 GCCACTGGCGCGAAAAAT 59.742 55.556 12.10 0.00 39.62 1.82
2277 2295 1.520342 GAGATCAGACGCCACTGGC 60.520 63.158 10.35 10.35 46.75 4.85
2283 2301 1.323271 TGACCTGGAGATCAGACGCC 61.323 60.000 0.00 0.00 46.18 5.68
2295 2313 3.278668 AGAATTGCAGAGATGACCTGG 57.721 47.619 0.00 0.00 32.51 4.45
2320 2338 2.359975 CGAGGCCTCCCCAAACAC 60.360 66.667 27.20 0.00 35.39 3.32
2343 2361 6.963805 CGGAGCTCTTCTCAAAATTTATTCAC 59.036 38.462 14.64 0.00 43.70 3.18
2349 2367 4.214332 GTGACGGAGCTCTTCTCAAAATTT 59.786 41.667 14.64 0.00 43.70 1.82
2361 2379 2.125912 ATGCACGTGACGGAGCTC 60.126 61.111 22.23 4.71 34.26 4.09
2404 2422 2.730094 AAAAAGCAGCCACGCCTG 59.270 55.556 0.00 0.00 35.93 4.85
2426 2444 1.064803 GTGATTTGTGTGTGCCGACAA 59.935 47.619 0.00 0.00 32.49 3.18
2437 2455 7.064490 GCCCCAAGTATTTTAATGTGATTTGTG 59.936 37.037 0.00 0.00 0.00 3.33
2442 2460 5.163416 GCAGCCCCAAGTATTTTAATGTGAT 60.163 40.000 0.00 0.00 0.00 3.06
2445 2463 4.352893 AGCAGCCCCAAGTATTTTAATGT 58.647 39.130 0.00 0.00 0.00 2.71
2448 2466 5.045140 AGAGTAGCAGCCCCAAGTATTTTAA 60.045 40.000 0.00 0.00 0.00 1.52
2467 2485 9.862371 GTCTCTTCAATTTGTAGATCAAGAGTA 57.138 33.333 16.56 6.99 37.35 2.59
2468 2486 8.370940 TGTCTCTTCAATTTGTAGATCAAGAGT 58.629 33.333 16.56 0.00 37.35 3.24
2473 2491 8.096414 TGTCATGTCTCTTCAATTTGTAGATCA 58.904 33.333 6.23 8.93 0.00 2.92
2479 2497 7.756395 AGAATGTCATGTCTCTTCAATTTGT 57.244 32.000 0.00 0.00 0.00 2.83
2488 2506 3.634448 CGGAGGTAGAATGTCATGTCTCT 59.366 47.826 0.00 0.00 0.00 3.10
2504 2522 2.496470 GGAGTACTTGACAATCGGAGGT 59.504 50.000 0.00 0.00 0.00 3.85
2509 2527 2.959516 TGCTGGAGTACTTGACAATCG 58.040 47.619 0.00 0.00 0.00 3.34
2515 2533 4.890158 TTCATCTTGCTGGAGTACTTGA 57.110 40.909 0.00 0.00 0.00 3.02
2561 2579 0.690762 GGGTTACTCTGCCTGTTGGA 59.309 55.000 0.00 0.00 34.57 3.53
2565 2583 0.977395 GTCAGGGTTACTCTGCCTGT 59.023 55.000 7.48 0.00 32.63 4.00
2576 2594 0.182775 AAACCAAGCTCGTCAGGGTT 59.817 50.000 0.00 0.00 43.33 4.11
2590 2608 7.893302 AGTGAATTGGTAGATCCATTAAAACCA 59.107 33.333 0.00 0.00 46.60 3.67
2597 2615 7.177878 ACAGAAAGTGAATTGGTAGATCCATT 58.822 34.615 0.00 0.00 46.60 3.16
2598 2616 6.725364 ACAGAAAGTGAATTGGTAGATCCAT 58.275 36.000 0.00 0.00 46.60 3.41
2602 2620 6.773638 ACTGACAGAAAGTGAATTGGTAGAT 58.226 36.000 10.08 0.00 0.00 1.98
2640 2658 2.684881 CAATAATCTTGAGCGCCCAAGT 59.315 45.455 27.80 14.63 42.95 3.16
2642 2660 2.682856 GTCAATAATCTTGAGCGCCCAA 59.317 45.455 2.29 3.09 0.00 4.12
2660 2678 8.360390 CACACAAAGCCTCTATATATACTGTCA 58.640 37.037 0.00 0.00 0.00 3.58
2666 2684 9.778741 CTTTTCCACACAAAGCCTCTATATATA 57.221 33.333 0.00 0.00 0.00 0.86
2691 2709 1.133976 CCCATTGATTTCCTCCTCGCT 60.134 52.381 0.00 0.00 0.00 4.93
2724 2742 1.917336 TAAACTCGGGCCCATGGGAC 61.917 60.000 36.00 33.44 44.33 4.46
2726 2744 0.768622 TATAAACTCGGGCCCATGGG 59.231 55.000 27.87 27.87 38.57 4.00
2729 2747 0.400594 GCCTATAAACTCGGGCCCAT 59.599 55.000 24.92 9.14 38.77 4.00
2738 2756 4.962362 CCCCATTCTTTTGGCCTATAAACT 59.038 41.667 3.32 0.00 35.29 2.66
2743 2761 2.626683 CCACCCCATTCTTTTGGCCTAT 60.627 50.000 3.32 0.00 35.29 2.57
2744 2762 1.272985 CCACCCCATTCTTTTGGCCTA 60.273 52.381 3.32 0.00 35.29 3.93
2747 2765 0.608130 GTCCACCCCATTCTTTTGGC 59.392 55.000 0.00 0.00 35.29 4.52
2762 2780 0.536460 GGTTCAAAAGGCCGAGTCCA 60.536 55.000 0.00 0.00 0.00 4.02
2765 2783 2.943036 TTAGGTTCAAAAGGCCGAGT 57.057 45.000 0.00 0.00 0.00 4.18
2780 2800 9.023967 CAAAGAGCGATTCCAAAATATTTTAGG 57.976 33.333 12.98 15.35 0.00 2.69
2783 2803 9.090692 CATCAAAGAGCGATTCCAAAATATTTT 57.909 29.630 7.64 7.64 0.00 1.82
2787 2807 6.456853 CGACATCAAAGAGCGATTCCAAAATA 60.457 38.462 0.00 0.00 0.00 1.40
2801 2821 2.349590 CACTGCCATCGACATCAAAGA 58.650 47.619 0.00 0.00 0.00 2.52
2805 2825 1.450134 GCCACTGCCATCGACATCA 60.450 57.895 0.00 0.00 0.00 3.07
2836 2856 3.013921 AGTTTCCAAAGTCGTTGCTCAA 58.986 40.909 0.00 0.00 35.74 3.02
2853 2873 1.140312 TGCTGGTCAGGAAGGAGTTT 58.860 50.000 0.00 0.00 0.00 2.66
2855 2875 2.854253 TTGCTGGTCAGGAAGGAGT 58.146 52.632 0.76 0.00 33.74 3.85
2892 2912 2.892334 GACTCGCAGCCGCAAACAA 61.892 57.895 0.00 0.00 38.40 2.83
2894 2914 4.430423 CGACTCGCAGCCGCAAAC 62.430 66.667 0.00 0.00 38.40 2.93
2906 2926 2.356780 CCCCAGTACCACCCGACTC 61.357 68.421 0.00 0.00 0.00 3.36
2907 2927 2.284405 CCCCAGTACCACCCGACT 60.284 66.667 0.00 0.00 0.00 4.18
2931 2951 1.000955 CGTCCAGAACCTAGCAGTGTT 59.999 52.381 0.00 0.00 0.00 3.32
2939 2959 5.072736 TGTCTAGATATCCGTCCAGAACCTA 59.927 44.000 0.00 0.00 0.00 3.08
2951 2971 2.231721 GCCTTCCGGTGTCTAGATATCC 59.768 54.545 0.00 0.00 0.00 2.59
2956 2976 4.029472 GGCCTTCCGGTGTCTAGA 57.971 61.111 0.00 0.00 0.00 2.43
2972 2992 4.034742 GGTGCCAACAATGTAATACTACGG 59.965 45.833 0.00 0.00 0.00 4.02
3017 3037 2.482142 CCTGACCGACAGCTTAGAATCC 60.482 54.545 4.47 0.00 44.52 3.01
3023 3043 0.970937 CCTCCCTGACCGACAGCTTA 60.971 60.000 4.47 0.00 44.52 3.09
3032 3052 2.048603 GTGCAATGCCTCCCTGACC 61.049 63.158 1.53 0.00 0.00 4.02
3036 3056 1.285962 ACTATTGTGCAATGCCTCCCT 59.714 47.619 1.53 0.00 32.50 4.20
3041 3061 4.136796 TCCATCTACTATTGTGCAATGCC 58.863 43.478 1.53 0.00 32.50 4.40
3044 3064 6.713903 CCTTGATCCATCTACTATTGTGCAAT 59.286 38.462 2.83 2.83 34.93 3.56
3045 3065 6.057533 CCTTGATCCATCTACTATTGTGCAA 58.942 40.000 0.00 0.00 0.00 4.08
3047 3067 5.698545 GTCCTTGATCCATCTACTATTGTGC 59.301 44.000 0.00 0.00 0.00 4.57
3054 3074 5.842874 TCATCATGTCCTTGATCCATCTACT 59.157 40.000 0.00 0.00 34.09 2.57
3056 3076 5.012458 GGTCATCATGTCCTTGATCCATCTA 59.988 44.000 0.00 0.00 34.09 1.98
3065 3085 2.495155 TGTGGGTCATCATGTCCTTG 57.505 50.000 0.64 0.00 0.00 3.61
3226 3246 7.816995 TGTTACTTGTTACCCGTTACGAATTAT 59.183 33.333 6.24 0.00 0.00 1.28
3346 3367 5.290493 AGCTTGACGATAATTCCCATGTA 57.710 39.130 0.00 0.00 0.00 2.29
3550 3571 2.421388 CGTAAGGGGCTGATTTGGATCA 60.421 50.000 0.00 0.00 39.92 2.92
3623 3644 8.155510 GGAAGGTATTGGGAAGTAATAAGTAGG 58.844 40.741 0.00 0.00 0.00 3.18
3643 3664 1.151452 TTTGGGCCTAGGGGAAGGT 60.151 57.895 11.72 0.00 39.02 3.50
3794 3815 7.709613 AGATTTGTGAGTAGTTACGTTTGTTCT 59.290 33.333 0.00 0.00 0.00 3.01
3820 3841 7.798071 ACCCCTCTTATTACGAACATGAATAA 58.202 34.615 0.00 0.00 0.00 1.40
3837 3858 8.900802 TCCTTTATGCATATTAATACCCCTCTT 58.099 33.333 7.36 0.00 0.00 2.85
3940 3961 4.906618 TCAAAACCTCAGATTGGTACCTC 58.093 43.478 14.36 2.94 36.69 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.