Multiple sequence alignment - TraesCS3B01G262900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G262900 chr3B 100.000 5708 0 0 1 5708 421663861 421658154 0.000000e+00 10541.0
1 TraesCS3B01G262900 chr3B 95.885 243 9 1 5382 5623 555086094 555086336 5.360000e-105 392.0
2 TraesCS3B01G262900 chr3B 84.291 261 27 12 5368 5623 173565594 173565343 5.710000e-60 243.0
3 TraesCS3B01G262900 chr3B 93.220 59 4 0 5629 5687 457185826 457185884 2.830000e-13 87.9
4 TraesCS3B01G262900 chr3A 93.268 3283 128 26 1949 5171 442769824 442773073 0.000000e+00 4752.0
5 TraesCS3B01G262900 chr3A 94.303 1966 87 9 1 1962 442767799 442769743 0.000000e+00 2987.0
6 TraesCS3B01G262900 chr3A 90.857 175 13 2 5173 5344 442774032 442774206 1.240000e-56 231.0
7 TraesCS3B01G262900 chr3D 95.549 2314 86 10 1407 3711 328390603 328392908 0.000000e+00 3687.0
8 TraesCS3B01G262900 chr3D 92.946 1361 39 26 1 1323 328389233 328390574 0.000000e+00 1929.0
9 TraesCS3B01G262900 chr3D 93.716 1273 36 12 3817 5045 328393106 328394378 0.000000e+00 1868.0
10 TraesCS3B01G262900 chr3D 86.454 251 28 6 5377 5623 586442365 586442613 2.620000e-68 270.0
11 TraesCS3B01G262900 chr3D 98.347 121 2 0 3699 3819 328392938 328393058 4.480000e-51 213.0
12 TraesCS3B01G262900 chr4B 94.779 249 12 1 5376 5623 508820246 508820494 2.490000e-103 387.0
13 TraesCS3B01G262900 chr4B 93.952 248 14 1 5377 5623 508815150 508815397 1.940000e-99 374.0
14 TraesCS3B01G262900 chr1B 94.355 248 12 2 5378 5623 48750145 48749898 4.170000e-101 379.0
15 TraesCS3B01G262900 chr1B 94.286 35 2 0 5629 5663 601065513 601065547 3.000000e-03 54.7
16 TraesCS3B01G262900 chr2A 91.270 252 14 5 5375 5623 73322979 73322733 2.550000e-88 337.0
17 TraesCS3B01G262900 chr5D 85.317 252 29 8 5378 5623 26529598 26529847 2.640000e-63 254.0
18 TraesCS3B01G262900 chr5B 84.190 253 28 11 5376 5623 560749484 560749239 9.560000e-58 235.0
19 TraesCS3B01G262900 chr7A 91.525 59 4 1 5629 5687 654195941 654195884 4.740000e-11 80.5
20 TraesCS3B01G262900 chr1A 97.143 35 1 0 5629 5663 59512215 59512249 6.180000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G262900 chr3B 421658154 421663861 5707 True 10541.000000 10541 100.000000 1 5708 1 chr3B.!!$R2 5707
1 TraesCS3B01G262900 chr3A 442767799 442774206 6407 False 2656.666667 4752 92.809333 1 5344 3 chr3A.!!$F1 5343
2 TraesCS3B01G262900 chr3D 328389233 328394378 5145 False 1924.250000 3687 95.139500 1 5045 4 chr3D.!!$F2 5044

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
795 833 0.106419 TTCCCTTCTGCCCGTTTGTT 60.106 50.000 0.0 0.0 0.00 2.83 F
1345 1387 0.179153 GAAGCCGCATTCCTGCTTTC 60.179 55.000 0.0 0.0 44.83 2.62 F
1384 1426 0.858583 TGTCGCTGATGTTTGTGTCG 59.141 50.000 0.0 0.0 0.00 4.35 F
2768 2912 0.403271 ACTCCTGGCTGCTTTGTGAT 59.597 50.000 0.0 0.0 0.00 3.06 F
2894 3040 1.771854 TCCCAGGCAGACAAAGTTACA 59.228 47.619 0.0 0.0 0.00 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2364 2508 0.107831 CGACCAACTCCCTTGTTCCA 59.892 55.000 0.00 0.0 0.00 3.53 R
2739 2883 1.137872 CAGCCAGGAGTTAGTAGCCAG 59.862 57.143 0.00 0.0 0.00 4.85 R
2872 3018 2.452600 AACTTTGTCTGCCTGGGAAA 57.547 45.000 0.00 0.0 0.00 3.13 R
3730 3920 0.930726 TTCCCAGTTGGTTCCAAGGT 59.069 50.000 4.37 0.0 34.77 3.50 R
4820 5113 2.106511 ACAGTAGGGTGCTCATGTTGTT 59.893 45.455 0.00 0.0 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 5.689819 AGAAATGTCGCAAACAGATACAAC 58.310 37.500 0.00 0.00 42.37 3.32
136 166 4.661222 TGTACAGATGCCAAGGAAAATCA 58.339 39.130 0.00 0.00 0.00 2.57
169 199 7.127686 GTGGAATTTGCACAAATGAGAAAAAG 58.872 34.615 15.24 0.00 40.57 2.27
170 200 6.260493 TGGAATTTGCACAAATGAGAAAAAGG 59.740 34.615 9.26 0.00 40.57 3.11
195 226 7.549134 GGGCAGAATTATAAAAACTTCAAAGGG 59.451 37.037 0.00 0.00 0.00 3.95
246 277 5.363292 CCACCCCAAATTGAATATCATGTCA 59.637 40.000 0.00 0.00 0.00 3.58
441 472 0.738389 GGACAGAAGAGAGAGAGGCG 59.262 60.000 0.00 0.00 0.00 5.52
454 485 1.745489 GAGGCGGTGTGGATTGACC 60.745 63.158 0.00 0.00 39.54 4.02
656 690 1.793134 GCCGTCGGATCTACATCGGT 61.793 60.000 17.49 0.00 40.05 4.69
685 723 0.603569 TTGGCGGAACTCTCAGTCTC 59.396 55.000 0.00 0.00 0.00 3.36
772 810 4.261363 GCTCCTTGTCCACTTTTCTTCTTG 60.261 45.833 0.00 0.00 0.00 3.02
773 811 4.207165 TCCTTGTCCACTTTTCTTCTTGG 58.793 43.478 0.00 0.00 0.00 3.61
774 812 3.243535 CCTTGTCCACTTTTCTTCTTGGC 60.244 47.826 0.00 0.00 0.00 4.52
775 813 3.297134 TGTCCACTTTTCTTCTTGGCT 57.703 42.857 0.00 0.00 0.00 4.75
776 814 3.631250 TGTCCACTTTTCTTCTTGGCTT 58.369 40.909 0.00 0.00 0.00 4.35
795 833 0.106419 TTCCCTTCTGCCCGTTTGTT 60.106 50.000 0.00 0.00 0.00 2.83
796 834 0.536460 TCCCTTCTGCCCGTTTGTTC 60.536 55.000 0.00 0.00 0.00 3.18
865 903 0.249911 AAGATCTATCGGGGTTGCGC 60.250 55.000 0.00 0.00 0.00 6.09
1129 1167 4.526770 CATGTGGCTCATGCGAGA 57.473 55.556 15.70 0.00 45.69 4.04
1130 1168 2.308344 CATGTGGCTCATGCGAGAG 58.692 57.895 15.70 1.13 45.69 3.20
1136 1174 1.756538 TGGCTCATGCGAGAGTATTCA 59.243 47.619 7.02 0.00 42.34 2.57
1214 1252 2.037121 TGTGCGGTATCATATCCAGGTG 59.963 50.000 0.00 0.00 0.00 4.00
1216 1254 2.969262 TGCGGTATCATATCCAGGTGAA 59.031 45.455 0.00 0.00 0.00 3.18
1218 1256 4.775253 TGCGGTATCATATCCAGGTGAATA 59.225 41.667 0.00 0.00 0.00 1.75
1246 1284 2.677914 TCCTCCTGCCGAATCTGAATA 58.322 47.619 0.00 0.00 0.00 1.75
1269 1307 3.365969 CCCATTTCGGTTTGCTGTCTTAC 60.366 47.826 0.00 0.00 0.00 2.34
1293 1335 5.182380 CGGTCATTTATTTTGTGTGTAGGGT 59.818 40.000 0.00 0.00 0.00 4.34
1296 1338 5.478679 TCATTTATTTTGTGTGTAGGGTGGG 59.521 40.000 0.00 0.00 0.00 4.61
1297 1339 2.302587 ATTTTGTGTGTAGGGTGGGG 57.697 50.000 0.00 0.00 0.00 4.96
1298 1340 0.186386 TTTTGTGTGTAGGGTGGGGG 59.814 55.000 0.00 0.00 0.00 5.40
1339 1381 1.312815 GCTAATGAAGCCGCATTCCT 58.687 50.000 5.05 0.00 46.25 3.36
1345 1387 0.179153 GAAGCCGCATTCCTGCTTTC 60.179 55.000 0.00 0.00 44.83 2.62
1353 1395 4.301628 CGCATTCCTGCTTTCTTTTCTTT 58.698 39.130 0.00 0.00 46.65 2.52
1354 1396 5.460646 CGCATTCCTGCTTTCTTTTCTTTA 58.539 37.500 0.00 0.00 46.65 1.85
1384 1426 0.858583 TGTCGCTGATGTTTGTGTCG 59.141 50.000 0.00 0.00 0.00 4.35
1396 1438 6.757478 TGATGTTTGTGTCGTTAGTACTGAAA 59.243 34.615 5.39 0.00 0.00 2.69
1409 1451 5.186996 AGTACTGAAATTTTGGTGTGCTG 57.813 39.130 0.00 0.00 0.00 4.41
1423 1465 1.213182 TGTGCTGGTGTGGGTTTCTTA 59.787 47.619 0.00 0.00 0.00 2.10
1590 1633 7.563556 TGTATACTGATGGACATTGGACTTCTA 59.436 37.037 4.17 0.00 0.00 2.10
1843 1886 6.817765 TTCCAAGGTTATCATTGTCTTGTC 57.182 37.500 0.00 0.00 34.12 3.18
1902 1945 8.537728 TTAGATGTTCTCCATTGGCAAAATAT 57.462 30.769 3.01 0.00 32.56 1.28
1919 1962 7.360017 GGCAAAATATTACTTTTGGTGCAAGTC 60.360 37.037 10.31 0.00 43.26 3.01
1967 2104 7.849322 TTTACATGTAGATGTAGATGCCCTA 57.151 36.000 12.05 0.00 44.21 3.53
1971 2108 5.584551 TGTAGATGTAGATGCCCTAGAGA 57.415 43.478 0.00 0.00 0.00 3.10
1977 2116 8.076910 AGATGTAGATGCCCTAGAGAATAATG 57.923 38.462 0.00 0.00 0.00 1.90
1983 2122 5.957771 TGCCCTAGAGAATAATGTTCAGT 57.042 39.130 0.00 0.00 0.00 3.41
1985 2124 7.055667 TGCCCTAGAGAATAATGTTCAGTAG 57.944 40.000 0.00 0.00 0.00 2.57
1988 2127 8.808092 GCCCTAGAGAATAATGTTCAGTAGTAT 58.192 37.037 0.00 0.00 0.00 2.12
2035 2176 4.436998 GCCCAGGACTCGGACACG 62.437 72.222 0.00 0.00 42.74 4.49
2069 2210 4.036144 GCCTAGATCATGGAAGCAGTTTTC 59.964 45.833 8.02 0.00 0.00 2.29
2082 2224 3.679502 AGCAGTTTTCTTTTTGTGTGTGC 59.320 39.130 0.00 0.00 0.00 4.57
2110 2252 4.651045 GCCTAAATGGAAGGAATGTGGAAT 59.349 41.667 0.00 0.00 36.08 3.01
2119 2261 3.279434 AGGAATGTGGAATTCGCCTTAC 58.721 45.455 0.00 0.00 0.00 2.34
2156 2298 8.442374 ACCTTAACTTTCCTATGGTCTTGTTTA 58.558 33.333 0.00 0.00 0.00 2.01
2159 2301 9.802039 TTAACTTTCCTATGGTCTTGTTTACAT 57.198 29.630 0.00 0.00 0.00 2.29
2358 2502 5.408909 TGTTGGTTGCATGATTAATTGCTTG 59.591 36.000 12.20 1.02 39.60 4.01
2437 2581 2.371841 AGCCTGCCCGAATCATAACATA 59.628 45.455 0.00 0.00 0.00 2.29
2670 2814 5.875359 GTCCTAATGAATCGTTCTTCCTTGT 59.125 40.000 0.00 0.00 0.00 3.16
2739 2883 2.286772 ACGCTGAAACATCACCGTTTTC 60.287 45.455 0.00 0.00 39.17 2.29
2768 2912 0.403271 ACTCCTGGCTGCTTTGTGAT 59.597 50.000 0.00 0.00 0.00 3.06
2894 3040 1.771854 TCCCAGGCAGACAAAGTTACA 59.228 47.619 0.00 0.00 0.00 2.41
3113 3261 8.868522 AGATTCATGAGTTTGAAGATTTGGTA 57.131 30.769 0.00 0.00 38.90 3.25
3155 3303 4.941263 ACTATCTTATGCAAAGCCGTTTGA 59.059 37.500 2.79 0.00 45.22 2.69
3157 3305 4.782019 TCTTATGCAAAGCCGTTTGATT 57.218 36.364 2.79 0.00 45.22 2.57
3161 3309 1.885887 TGCAAAGCCGTTTGATTAGCT 59.114 42.857 2.79 0.00 45.22 3.32
3171 3319 5.398169 CCGTTTGATTAGCTACAATTTGCA 58.602 37.500 0.00 0.00 0.00 4.08
3492 3640 2.039216 TCGGCATGTTGAGGGTAGAAAA 59.961 45.455 0.00 0.00 0.00 2.29
3527 3675 4.337274 AGTTTGGAGTTTGTTAACCTTCCG 59.663 41.667 2.48 0.00 33.45 4.30
3652 3800 3.503363 CAGTAGCCACTTTGCAGATTTCA 59.497 43.478 0.00 0.00 30.46 2.69
3730 3920 0.771127 AGCTAGTTTGGGTGAGCCAA 59.229 50.000 12.77 12.77 35.45 4.52
3774 3964 3.652057 TTTATTAAGCCTGCTCCAGCT 57.348 42.857 0.00 0.00 42.66 4.24
4048 4288 7.027778 AGTTTGCTAGGTTTAGTCAAAACTG 57.972 36.000 0.00 0.00 45.70 3.16
4140 4405 4.928615 GGAGACTATGCTCATGATGTTAGC 59.071 45.833 0.00 0.00 36.62 3.09
4306 4587 5.884792 AGTCAAAGGATGATGATCTTCCAAC 59.115 40.000 24.09 16.82 41.64 3.77
4353 4634 5.091431 GGCGAGAATGAAACTGAATTTGAG 58.909 41.667 0.00 0.00 0.00 3.02
4628 4920 7.610305 TGTATTTGAAAAGAAGGGACCTATCAC 59.390 37.037 0.00 0.00 0.00 3.06
4669 4961 5.551305 TTCACTGATTGAAACTCTCTCCA 57.449 39.130 0.00 0.00 41.51 3.86
4820 5113 3.723097 TTGGGTGGCAGCCGTTGAA 62.723 57.895 28.77 15.81 38.98 2.69
5047 5342 9.057089 CCATAGTTCTGTAGAAGAAAACAAGTT 57.943 33.333 0.00 0.00 46.51 2.66
5069 5364 5.705609 TCATTTACAAAAGGAAGAGCACC 57.294 39.130 0.00 0.00 0.00 5.01
5078 5373 7.334858 ACAAAAGGAAGAGCACCAAATTAAAA 58.665 30.769 0.00 0.00 0.00 1.52
5099 5394 5.500645 AAAAGAAACAGCACTTGACTACC 57.499 39.130 0.00 0.00 0.00 3.18
5127 5422 0.331616 AATGCAACCCCTACCACTCC 59.668 55.000 0.00 0.00 0.00 3.85
5133 5428 1.694169 CCCCTACCACTCCTGCCAT 60.694 63.158 0.00 0.00 0.00 4.40
5134 5429 1.528824 CCCTACCACTCCTGCCATG 59.471 63.158 0.00 0.00 0.00 3.66
5136 5431 1.153086 CTACCACTCCTGCCATGGC 60.153 63.158 30.54 30.54 36.96 4.40
5157 5452 4.261197 GGCCCGTAGCTTTATTTCATCAAG 60.261 45.833 0.00 0.00 43.05 3.02
5158 5453 4.261197 GCCCGTAGCTTTATTTCATCAAGG 60.261 45.833 0.00 0.00 38.99 3.61
5162 5457 7.312899 CCGTAGCTTTATTTCATCAAGGTTTT 58.687 34.615 0.00 0.00 30.99 2.43
5207 6458 3.628032 TGCGATGTGTTACCAAAAAGACA 59.372 39.130 0.00 0.00 37.09 3.41
5224 6475 9.450807 CAAAAAGACAAAGTAAGGTTATCTGTG 57.549 33.333 0.00 0.00 0.00 3.66
5235 6486 3.693382 TATCTGTGACGCCGTGCCG 62.693 63.158 0.00 0.00 0.00 5.69
5252 6503 1.509787 CGCAAATGTCTGAACGGCG 60.510 57.895 4.80 4.80 36.93 6.46
5272 6523 4.128554 CGGTATCCGGATCAATTTTTCG 57.871 45.455 23.08 10.23 44.15 3.46
5273 6524 3.558418 CGGTATCCGGATCAATTTTTCGT 59.442 43.478 23.08 0.00 44.15 3.85
5274 6525 4.034742 CGGTATCCGGATCAATTTTTCGTT 59.965 41.667 23.08 0.00 44.15 3.85
5275 6526 5.507974 GGTATCCGGATCAATTTTTCGTTC 58.492 41.667 23.08 0.00 0.00 3.95
5320 6572 2.594962 CGCGCGTGTCCAAACTCTT 61.595 57.895 24.19 0.00 0.00 2.85
5321 6573 1.082756 GCGCGTGTCCAAACTCTTG 60.083 57.895 8.43 0.00 0.00 3.02
5323 6575 0.042188 CGCGTGTCCAAACTCTTGTG 60.042 55.000 0.00 0.00 0.00 3.33
5330 6582 3.068024 TGTCCAAACTCTTGTGAATTGGC 59.932 43.478 0.00 0.00 38.29 4.52
5333 6585 3.068590 CCAAACTCTTGTGAATTGGCACT 59.931 43.478 0.00 0.00 39.49 4.40
5335 6587 5.047802 CCAAACTCTTGTGAATTGGCACTAT 60.048 40.000 0.00 0.00 39.49 2.12
5336 6588 5.886960 AACTCTTGTGAATTGGCACTATC 57.113 39.130 0.00 0.00 39.49 2.08
5338 6590 4.940046 ACTCTTGTGAATTGGCACTATCTG 59.060 41.667 0.00 0.00 39.49 2.90
5339 6591 4.264253 TCTTGTGAATTGGCACTATCTGG 58.736 43.478 0.00 0.00 39.49 3.86
5341 6593 2.575735 TGTGAATTGGCACTATCTGGGA 59.424 45.455 0.00 0.00 39.49 4.37
5342 6594 3.010027 TGTGAATTGGCACTATCTGGGAA 59.990 43.478 0.00 0.00 39.49 3.97
5343 6595 3.378427 GTGAATTGGCACTATCTGGGAAC 59.622 47.826 0.00 0.00 35.91 3.62
5344 6596 5.699932 GTGAATTGGCACTATCTGGGAACC 61.700 50.000 0.00 0.00 41.96 3.62
5345 6597 7.848034 GTGAATTGGCACTATCTGGGAACCT 62.848 48.000 0.00 0.00 42.06 3.50
5346 6598 8.543839 GTGAATTGGCACTATCTGGGAACCTA 62.544 46.154 0.00 0.00 42.06 3.08
5347 6599 9.907723 GTGAATTGGCACTATCTGGGAACCTAA 62.908 44.444 0.00 0.00 42.06 2.69
5362 6614 5.349809 GGAACCTAAGGAGATTTGTAGACG 58.650 45.833 0.00 0.00 0.00 4.18
5363 6615 5.105432 GGAACCTAAGGAGATTTGTAGACGT 60.105 44.000 0.00 0.00 0.00 4.34
5364 6616 5.997384 ACCTAAGGAGATTTGTAGACGTT 57.003 39.130 0.00 0.00 0.00 3.99
5365 6617 5.721232 ACCTAAGGAGATTTGTAGACGTTG 58.279 41.667 0.00 0.00 0.00 4.10
5366 6618 5.109903 CCTAAGGAGATTTGTAGACGTTGG 58.890 45.833 0.00 0.00 0.00 3.77
5367 6619 4.884668 AAGGAGATTTGTAGACGTTGGA 57.115 40.909 0.00 0.00 0.00 3.53
5368 6620 4.189639 AGGAGATTTGTAGACGTTGGAC 57.810 45.455 0.00 0.00 0.00 4.02
5369 6621 3.833070 AGGAGATTTGTAGACGTTGGACT 59.167 43.478 0.00 0.00 0.00 3.85
5370 6622 5.014858 AGGAGATTTGTAGACGTTGGACTA 58.985 41.667 0.00 0.00 0.00 2.59
5371 6623 5.479375 AGGAGATTTGTAGACGTTGGACTAA 59.521 40.000 0.00 0.00 0.00 2.24
5372 6624 6.154706 AGGAGATTTGTAGACGTTGGACTAAT 59.845 38.462 0.00 0.00 0.00 1.73
5373 6625 7.341256 AGGAGATTTGTAGACGTTGGACTAATA 59.659 37.037 0.00 0.00 0.00 0.98
5374 6626 7.434602 GGAGATTTGTAGACGTTGGACTAATAC 59.565 40.741 0.00 0.00 0.00 1.89
5375 6627 7.833786 AGATTTGTAGACGTTGGACTAATACA 58.166 34.615 0.00 0.00 0.00 2.29
5376 6628 8.308931 AGATTTGTAGACGTTGGACTAATACAA 58.691 33.333 0.00 0.00 0.00 2.41
5377 6629 7.878477 TTTGTAGACGTTGGACTAATACAAG 57.122 36.000 0.00 0.00 0.00 3.16
5378 6630 5.957798 TGTAGACGTTGGACTAATACAAGG 58.042 41.667 0.00 0.00 39.92 3.61
5379 6631 4.467198 AGACGTTGGACTAATACAAGGG 57.533 45.455 0.00 0.00 38.62 3.95
5380 6632 4.091549 AGACGTTGGACTAATACAAGGGA 58.908 43.478 0.00 0.00 38.62 4.20
5381 6633 4.529377 AGACGTTGGACTAATACAAGGGAA 59.471 41.667 0.00 0.00 38.62 3.97
5382 6634 5.012354 AGACGTTGGACTAATACAAGGGAAA 59.988 40.000 0.00 0.00 38.62 3.13
5383 6635 4.999311 ACGTTGGACTAATACAAGGGAAAC 59.001 41.667 0.00 0.00 38.62 2.78
5384 6636 4.092383 CGTTGGACTAATACAAGGGAAACG 59.908 45.833 0.00 0.00 31.89 3.60
5385 6637 4.895668 TGGACTAATACAAGGGAAACGT 57.104 40.909 0.00 0.00 0.00 3.99
5386 6638 5.231702 TGGACTAATACAAGGGAAACGTT 57.768 39.130 0.00 0.00 39.42 3.99
5387 6639 5.623169 TGGACTAATACAAGGGAAACGTTT 58.377 37.500 14.57 14.57 36.00 3.60
5388 6640 5.470777 TGGACTAATACAAGGGAAACGTTTG 59.529 40.000 20.10 6.83 36.00 2.93
5389 6641 5.471116 GGACTAATACAAGGGAAACGTTTGT 59.529 40.000 20.10 12.93 40.48 2.83
5390 6642 6.308371 ACTAATACAAGGGAAACGTTTGTG 57.692 37.500 20.10 12.78 38.65 3.33
5391 6643 4.577834 AATACAAGGGAAACGTTTGTGG 57.422 40.909 20.10 2.89 38.65 4.17
5392 6644 0.458260 ACAAGGGAAACGTTTGTGGC 59.542 50.000 20.10 3.37 37.40 5.01
5393 6645 0.249280 CAAGGGAAACGTTTGTGGCC 60.249 55.000 20.10 12.96 36.00 5.36
5394 6646 1.730451 AAGGGAAACGTTTGTGGCCG 61.730 55.000 20.10 0.00 34.05 6.13
5395 6647 2.333581 GGAAACGTTTGTGGCCGG 59.666 61.111 20.10 0.00 0.00 6.13
5396 6648 2.483197 GGAAACGTTTGTGGCCGGT 61.483 57.895 20.10 0.00 0.00 5.28
5397 6649 1.298788 GAAACGTTTGTGGCCGGTG 60.299 57.895 20.10 0.00 0.00 4.94
5398 6650 3.418744 AAACGTTTGTGGCCGGTGC 62.419 57.895 13.81 0.00 0.00 5.01
5420 6672 4.796495 GCCGAAGATTGGGCCGGT 62.796 66.667 1.90 0.00 45.11 5.28
5421 6673 2.513897 CCGAAGATTGGGCCGGTC 60.514 66.667 1.90 0.00 37.40 4.79
5422 6674 2.890474 CGAAGATTGGGCCGGTCG 60.890 66.667 1.90 0.00 0.00 4.79
5423 6675 3.202706 GAAGATTGGGCCGGTCGC 61.203 66.667 1.90 4.53 0.00 5.19
5424 6676 3.969250 GAAGATTGGGCCGGTCGCA 62.969 63.158 1.90 7.47 40.31 5.10
5425 6677 3.344137 AAGATTGGGCCGGTCGCAT 62.344 57.895 14.46 2.54 40.31 4.73
5426 6678 3.585990 GATTGGGCCGGTCGCATG 61.586 66.667 14.46 0.00 40.31 4.06
5435 6687 2.894879 GGTCGCATGCCGCATGTA 60.895 61.111 29.36 17.90 43.10 2.29
5436 6688 2.324477 GTCGCATGCCGCATGTAC 59.676 61.111 29.36 23.65 43.10 2.90
5437 6689 3.261216 TCGCATGCCGCATGTACG 61.261 61.111 29.36 24.78 43.10 3.67
5438 6690 3.261216 CGCATGCCGCATGTACGA 61.261 61.111 29.36 0.00 43.10 3.43
5439 6691 2.597713 CGCATGCCGCATGTACGAT 61.598 57.895 29.36 0.00 43.10 3.73
5440 6692 1.082561 GCATGCCGCATGTACGATG 60.083 57.895 29.36 9.10 43.10 3.84
5441 6693 1.570967 CATGCCGCATGTACGATGG 59.429 57.895 22.92 0.00 37.12 3.51
5442 6694 0.879839 CATGCCGCATGTACGATGGA 60.880 55.000 22.92 0.00 37.12 3.41
5443 6695 0.179059 ATGCCGCATGTACGATGGAA 60.179 50.000 4.68 0.00 34.06 3.53
5444 6696 0.391793 TGCCGCATGTACGATGGAAA 60.392 50.000 0.00 0.00 34.06 3.13
5445 6697 0.304705 GCCGCATGTACGATGGAAAG 59.695 55.000 0.00 0.00 34.06 2.62
5446 6698 1.934589 CCGCATGTACGATGGAAAGA 58.065 50.000 0.00 0.00 34.06 2.52
5447 6699 2.276201 CCGCATGTACGATGGAAAGAA 58.724 47.619 0.00 0.00 34.06 2.52
5448 6700 2.030457 CCGCATGTACGATGGAAAGAAC 59.970 50.000 0.00 0.00 34.06 3.01
5449 6701 2.285026 CGCATGTACGATGGAAAGAACG 60.285 50.000 0.00 0.00 34.06 3.95
5450 6702 2.927477 GCATGTACGATGGAAAGAACGA 59.073 45.455 0.00 0.00 0.00 3.85
5451 6703 3.555956 GCATGTACGATGGAAAGAACGAT 59.444 43.478 0.00 0.00 0.00 3.73
5452 6704 4.318121 GCATGTACGATGGAAAGAACGATC 60.318 45.833 0.00 0.00 0.00 3.69
5454 6706 2.933495 ACGATGGAAAGAACGATCGA 57.067 45.000 24.34 0.00 46.00 3.59
5455 6707 2.798680 ACGATGGAAAGAACGATCGAG 58.201 47.619 24.34 0.00 46.00 4.04
5456 6708 2.163815 ACGATGGAAAGAACGATCGAGT 59.836 45.455 24.34 9.13 46.00 4.18
5457 6709 2.531912 CGATGGAAAGAACGATCGAGTG 59.468 50.000 24.34 0.00 46.00 3.51
5458 6710 1.710013 TGGAAAGAACGATCGAGTGC 58.290 50.000 24.34 7.60 0.00 4.40
5459 6711 1.272490 TGGAAAGAACGATCGAGTGCT 59.728 47.619 24.34 9.84 0.00 4.40
5460 6712 1.921230 GGAAAGAACGATCGAGTGCTC 59.079 52.381 24.34 11.84 0.00 4.26
5461 6713 1.921230 GAAAGAACGATCGAGTGCTCC 59.079 52.381 24.34 1.31 0.00 4.70
5462 6714 1.178276 AAGAACGATCGAGTGCTCCT 58.822 50.000 24.34 4.64 0.00 3.69
5463 6715 0.453793 AGAACGATCGAGTGCTCCTG 59.546 55.000 24.34 0.00 0.00 3.86
5464 6716 0.526524 GAACGATCGAGTGCTCCTGG 60.527 60.000 24.34 0.00 0.00 4.45
5465 6717 2.279120 CGATCGAGTGCTCCTGGC 60.279 66.667 10.26 0.00 42.22 4.85
5466 6718 2.107953 GATCGAGTGCTCCTGGCC 59.892 66.667 0.00 0.00 40.92 5.36
5467 6719 3.453070 GATCGAGTGCTCCTGGCCC 62.453 68.421 0.00 0.00 40.92 5.80
5468 6720 3.991924 ATCGAGTGCTCCTGGCCCT 62.992 63.158 0.00 0.00 40.92 5.19
5469 6721 4.154347 CGAGTGCTCCTGGCCCTC 62.154 72.222 0.00 0.00 41.08 4.30
5470 6722 2.686835 GAGTGCTCCTGGCCCTCT 60.687 66.667 0.00 0.00 41.24 3.69
5471 6723 2.686835 AGTGCTCCTGGCCCTCTC 60.687 66.667 0.00 0.00 40.92 3.20
5472 6724 4.154347 GTGCTCCTGGCCCTCTCG 62.154 72.222 0.00 0.00 40.92 4.04
5473 6725 4.704103 TGCTCCTGGCCCTCTCGT 62.704 66.667 0.00 0.00 40.92 4.18
5474 6726 4.154347 GCTCCTGGCCCTCTCGTG 62.154 72.222 0.00 0.00 34.27 4.35
5475 6727 2.363018 CTCCTGGCCCTCTCGTGA 60.363 66.667 0.00 0.00 0.00 4.35
5476 6728 1.760086 CTCCTGGCCCTCTCGTGAT 60.760 63.158 0.00 0.00 0.00 3.06
5477 6729 2.025767 CTCCTGGCCCTCTCGTGATG 62.026 65.000 0.00 0.00 0.00 3.07
5478 6730 2.060383 CCTGGCCCTCTCGTGATGA 61.060 63.158 0.00 0.00 0.00 2.92
5479 6731 1.142748 CTGGCCCTCTCGTGATGAC 59.857 63.158 0.00 0.00 0.00 3.06
5481 6733 2.711922 GGCCCTCTCGTGATGACGT 61.712 63.158 4.24 0.00 46.20 4.34
5482 6734 1.517257 GCCCTCTCGTGATGACGTG 60.517 63.158 4.24 2.04 46.20 4.49
5483 6735 1.883732 CCCTCTCGTGATGACGTGT 59.116 57.895 4.24 0.00 46.20 4.49
5484 6736 0.179161 CCCTCTCGTGATGACGTGTC 60.179 60.000 4.24 0.00 46.20 3.67
5485 6737 0.179161 CCTCTCGTGATGACGTGTCC 60.179 60.000 4.24 0.00 46.20 4.02
5486 6738 0.805614 CTCTCGTGATGACGTGTCCT 59.194 55.000 4.24 0.00 46.20 3.85
5487 6739 0.521735 TCTCGTGATGACGTGTCCTG 59.478 55.000 4.24 0.00 46.20 3.86
5488 6740 0.241213 CTCGTGATGACGTGTCCTGT 59.759 55.000 4.24 0.00 46.20 4.00
5489 6741 0.039527 TCGTGATGACGTGTCCTGTG 60.040 55.000 4.24 0.00 46.20 3.66
5490 6742 1.008875 CGTGATGACGTGTCCTGTGG 61.009 60.000 0.00 0.00 40.91 4.17
5491 6743 0.317160 GTGATGACGTGTCCTGTGGA 59.683 55.000 0.00 0.00 0.00 4.02
5499 6751 3.936203 GTCCTGTGGACCCGTGCA 61.936 66.667 5.49 0.00 46.19 4.57
5516 6768 4.658786 ACCGCCCTGTCCTCCCTT 62.659 66.667 0.00 0.00 0.00 3.95
5517 6769 3.787001 CCGCCCTGTCCTCCCTTC 61.787 72.222 0.00 0.00 0.00 3.46
5518 6770 2.685380 CGCCCTGTCCTCCCTTCT 60.685 66.667 0.00 0.00 0.00 2.85
5519 6771 2.294078 CGCCCTGTCCTCCCTTCTT 61.294 63.158 0.00 0.00 0.00 2.52
5520 6772 0.976073 CGCCCTGTCCTCCCTTCTTA 60.976 60.000 0.00 0.00 0.00 2.10
5521 6773 1.512735 GCCCTGTCCTCCCTTCTTAT 58.487 55.000 0.00 0.00 0.00 1.73
5522 6774 1.418264 GCCCTGTCCTCCCTTCTTATC 59.582 57.143 0.00 0.00 0.00 1.75
5523 6775 2.050918 CCCTGTCCTCCCTTCTTATCC 58.949 57.143 0.00 0.00 0.00 2.59
5524 6776 2.629639 CCCTGTCCTCCCTTCTTATCCA 60.630 54.545 0.00 0.00 0.00 3.41
5525 6777 3.321950 CCTGTCCTCCCTTCTTATCCAT 58.678 50.000 0.00 0.00 0.00 3.41
5526 6778 3.326297 CCTGTCCTCCCTTCTTATCCATC 59.674 52.174 0.00 0.00 0.00 3.51
5527 6779 3.318313 TGTCCTCCCTTCTTATCCATCC 58.682 50.000 0.00 0.00 0.00 3.51
5528 6780 3.311327 TGTCCTCCCTTCTTATCCATCCA 60.311 47.826 0.00 0.00 0.00 3.41
5529 6781 3.071747 GTCCTCCCTTCTTATCCATCCAC 59.928 52.174 0.00 0.00 0.00 4.02
5530 6782 3.048600 CCTCCCTTCTTATCCATCCACA 58.951 50.000 0.00 0.00 0.00 4.17
5531 6783 3.181450 CCTCCCTTCTTATCCATCCACAC 60.181 52.174 0.00 0.00 0.00 3.82
5532 6784 3.455910 CTCCCTTCTTATCCATCCACACA 59.544 47.826 0.00 0.00 0.00 3.72
5533 6785 3.849574 TCCCTTCTTATCCATCCACACAA 59.150 43.478 0.00 0.00 0.00 3.33
5534 6786 4.478317 TCCCTTCTTATCCATCCACACAAT 59.522 41.667 0.00 0.00 0.00 2.71
5535 6787 4.823989 CCCTTCTTATCCATCCACACAATC 59.176 45.833 0.00 0.00 0.00 2.67
5536 6788 5.398353 CCCTTCTTATCCATCCACACAATCT 60.398 44.000 0.00 0.00 0.00 2.40
5537 6789 6.125029 CCTTCTTATCCATCCACACAATCTT 58.875 40.000 0.00 0.00 0.00 2.40
5538 6790 7.282585 CCTTCTTATCCATCCACACAATCTTA 58.717 38.462 0.00 0.00 0.00 2.10
5539 6791 7.941238 CCTTCTTATCCATCCACACAATCTTAT 59.059 37.037 0.00 0.00 0.00 1.73
5540 6792 8.908786 TTCTTATCCATCCACACAATCTTATC 57.091 34.615 0.00 0.00 0.00 1.75
5541 6793 7.453393 TCTTATCCATCCACACAATCTTATCC 58.547 38.462 0.00 0.00 0.00 2.59
5542 6794 5.919348 ATCCATCCACACAATCTTATCCT 57.081 39.130 0.00 0.00 0.00 3.24
5543 6795 5.296151 TCCATCCACACAATCTTATCCTC 57.704 43.478 0.00 0.00 0.00 3.71
5544 6796 4.971282 TCCATCCACACAATCTTATCCTCT 59.029 41.667 0.00 0.00 0.00 3.69
5545 6797 5.070981 TCCATCCACACAATCTTATCCTCTC 59.929 44.000 0.00 0.00 0.00 3.20
5546 6798 5.303971 CATCCACACAATCTTATCCTCTCC 58.696 45.833 0.00 0.00 0.00 3.71
5547 6799 3.711704 TCCACACAATCTTATCCTCTCCC 59.288 47.826 0.00 0.00 0.00 4.30
5548 6800 3.713764 CCACACAATCTTATCCTCTCCCT 59.286 47.826 0.00 0.00 0.00 4.20
5549 6801 4.202305 CCACACAATCTTATCCTCTCCCTC 60.202 50.000 0.00 0.00 0.00 4.30
5550 6802 3.970640 ACACAATCTTATCCTCTCCCTCC 59.029 47.826 0.00 0.00 0.00 4.30
5551 6803 3.969976 CACAATCTTATCCTCTCCCTCCA 59.030 47.826 0.00 0.00 0.00 3.86
5552 6804 3.970640 ACAATCTTATCCTCTCCCTCCAC 59.029 47.826 0.00 0.00 0.00 4.02
5553 6805 4.230455 CAATCTTATCCTCTCCCTCCACT 58.770 47.826 0.00 0.00 0.00 4.00
5554 6806 3.320610 TCTTATCCTCTCCCTCCACTG 57.679 52.381 0.00 0.00 0.00 3.66
5555 6807 2.587777 TCTTATCCTCTCCCTCCACTGT 59.412 50.000 0.00 0.00 0.00 3.55
5556 6808 3.012959 TCTTATCCTCTCCCTCCACTGTT 59.987 47.826 0.00 0.00 0.00 3.16
5557 6809 2.350863 ATCCTCTCCCTCCACTGTTT 57.649 50.000 0.00 0.00 0.00 2.83
5558 6810 1.645710 TCCTCTCCCTCCACTGTTTC 58.354 55.000 0.00 0.00 0.00 2.78
5559 6811 1.150135 TCCTCTCCCTCCACTGTTTCT 59.850 52.381 0.00 0.00 0.00 2.52
5560 6812 1.552792 CCTCTCCCTCCACTGTTTCTC 59.447 57.143 0.00 0.00 0.00 2.87
5561 6813 2.534990 CTCTCCCTCCACTGTTTCTCT 58.465 52.381 0.00 0.00 0.00 3.10
5562 6814 2.903135 CTCTCCCTCCACTGTTTCTCTT 59.097 50.000 0.00 0.00 0.00 2.85
5563 6815 2.900546 TCTCCCTCCACTGTTTCTCTTC 59.099 50.000 0.00 0.00 0.00 2.87
5564 6816 1.978580 TCCCTCCACTGTTTCTCTTCC 59.021 52.381 0.00 0.00 0.00 3.46
5565 6817 1.003696 CCCTCCACTGTTTCTCTTCCC 59.996 57.143 0.00 0.00 0.00 3.97
5566 6818 1.003696 CCTCCACTGTTTCTCTTCCCC 59.996 57.143 0.00 0.00 0.00 4.81
5567 6819 1.981495 CTCCACTGTTTCTCTTCCCCT 59.019 52.381 0.00 0.00 0.00 4.79
5568 6820 1.978580 TCCACTGTTTCTCTTCCCCTC 59.021 52.381 0.00 0.00 0.00 4.30
5569 6821 1.699634 CCACTGTTTCTCTTCCCCTCA 59.300 52.381 0.00 0.00 0.00 3.86
5570 6822 2.106511 CCACTGTTTCTCTTCCCCTCAA 59.893 50.000 0.00 0.00 0.00 3.02
5571 6823 3.245052 CCACTGTTTCTCTTCCCCTCAAT 60.245 47.826 0.00 0.00 0.00 2.57
5572 6824 4.006319 CACTGTTTCTCTTCCCCTCAATC 58.994 47.826 0.00 0.00 0.00 2.67
5573 6825 3.913163 ACTGTTTCTCTTCCCCTCAATCT 59.087 43.478 0.00 0.00 0.00 2.40
5574 6826 4.019771 ACTGTTTCTCTTCCCCTCAATCTC 60.020 45.833 0.00 0.00 0.00 2.75
5575 6827 3.055819 TGTTTCTCTTCCCCTCAATCTCG 60.056 47.826 0.00 0.00 0.00 4.04
5576 6828 1.115467 TCTCTTCCCCTCAATCTCGC 58.885 55.000 0.00 0.00 0.00 5.03
5577 6829 0.105778 CTCTTCCCCTCAATCTCGCC 59.894 60.000 0.00 0.00 0.00 5.54
5578 6830 0.325671 TCTTCCCCTCAATCTCGCCT 60.326 55.000 0.00 0.00 0.00 5.52
5579 6831 0.105778 CTTCCCCTCAATCTCGCCTC 59.894 60.000 0.00 0.00 0.00 4.70
5580 6832 1.338136 TTCCCCTCAATCTCGCCTCC 61.338 60.000 0.00 0.00 0.00 4.30
5581 6833 1.764054 CCCCTCAATCTCGCCTCCT 60.764 63.158 0.00 0.00 0.00 3.69
5582 6834 1.745264 CCCTCAATCTCGCCTCCTC 59.255 63.158 0.00 0.00 0.00 3.71
5583 6835 1.745264 CCTCAATCTCGCCTCCTCC 59.255 63.158 0.00 0.00 0.00 4.30
5584 6836 0.758685 CCTCAATCTCGCCTCCTCCT 60.759 60.000 0.00 0.00 0.00 3.69
5585 6837 0.673437 CTCAATCTCGCCTCCTCCTC 59.327 60.000 0.00 0.00 0.00 3.71
5586 6838 0.260230 TCAATCTCGCCTCCTCCTCT 59.740 55.000 0.00 0.00 0.00 3.69
5587 6839 0.673437 CAATCTCGCCTCCTCCTCTC 59.327 60.000 0.00 0.00 0.00 3.20
5588 6840 0.555769 AATCTCGCCTCCTCCTCTCT 59.444 55.000 0.00 0.00 0.00 3.10
5589 6841 0.178992 ATCTCGCCTCCTCCTCTCTG 60.179 60.000 0.00 0.00 0.00 3.35
5590 6842 2.441164 TCGCCTCCTCCTCTCTGC 60.441 66.667 0.00 0.00 0.00 4.26
5591 6843 3.535962 CGCCTCCTCCTCTCTGCC 61.536 72.222 0.00 0.00 0.00 4.85
5592 6844 2.042025 GCCTCCTCCTCTCTGCCT 60.042 66.667 0.00 0.00 0.00 4.75
5593 6845 2.133641 GCCTCCTCCTCTCTGCCTC 61.134 68.421 0.00 0.00 0.00 4.70
5594 6846 1.620259 CCTCCTCCTCTCTGCCTCT 59.380 63.158 0.00 0.00 0.00 3.69
5595 6847 0.032217 CCTCCTCCTCTCTGCCTCTT 60.032 60.000 0.00 0.00 0.00 2.85
5596 6848 1.402787 CTCCTCCTCTCTGCCTCTTC 58.597 60.000 0.00 0.00 0.00 2.87
5597 6849 1.006813 TCCTCCTCTCTGCCTCTTCT 58.993 55.000 0.00 0.00 0.00 2.85
5598 6850 1.360852 TCCTCCTCTCTGCCTCTTCTT 59.639 52.381 0.00 0.00 0.00 2.52
5599 6851 1.756538 CCTCCTCTCTGCCTCTTCTTC 59.243 57.143 0.00 0.00 0.00 2.87
5600 6852 1.756538 CTCCTCTCTGCCTCTTCTTCC 59.243 57.143 0.00 0.00 0.00 3.46
5601 6853 0.829990 CCTCTCTGCCTCTTCTTCCC 59.170 60.000 0.00 0.00 0.00 3.97
5602 6854 0.829990 CTCTCTGCCTCTTCTTCCCC 59.170 60.000 0.00 0.00 0.00 4.81
5603 6855 0.117140 TCTCTGCCTCTTCTTCCCCA 59.883 55.000 0.00 0.00 0.00 4.96
5604 6856 0.251634 CTCTGCCTCTTCTTCCCCAC 59.748 60.000 0.00 0.00 0.00 4.61
5605 6857 0.473694 TCTGCCTCTTCTTCCCCACA 60.474 55.000 0.00 0.00 0.00 4.17
5606 6858 0.035630 CTGCCTCTTCTTCCCCACAG 60.036 60.000 0.00 0.00 0.00 3.66
5607 6859 1.377856 GCCTCTTCTTCCCCACAGC 60.378 63.158 0.00 0.00 0.00 4.40
5608 6860 1.078848 CCTCTTCTTCCCCACAGCG 60.079 63.158 0.00 0.00 0.00 5.18
5609 6861 1.078848 CTCTTCTTCCCCACAGCGG 60.079 63.158 0.00 0.00 0.00 5.52
5610 6862 2.747855 CTTCTTCCCCACAGCGGC 60.748 66.667 0.00 0.00 0.00 6.53
5611 6863 4.344865 TTCTTCCCCACAGCGGCC 62.345 66.667 0.00 0.00 0.00 6.13
5613 6865 4.431131 CTTCCCCACAGCGGCCAT 62.431 66.667 2.24 0.00 0.00 4.40
5614 6866 4.738998 TTCCCCACAGCGGCCATG 62.739 66.667 2.24 2.93 0.00 3.66
5618 6870 4.415150 CCACAGCGGCCATGACCT 62.415 66.667 11.77 0.00 0.00 3.85
5619 6871 2.360350 CACAGCGGCCATGACCTT 60.360 61.111 11.77 0.00 0.00 3.50
5620 6872 2.360350 ACAGCGGCCATGACCTTG 60.360 61.111 11.77 0.00 0.00 3.61
5621 6873 3.818787 CAGCGGCCATGACCTTGC 61.819 66.667 2.24 0.00 0.00 4.01
5624 6876 3.136123 CGGCCATGACCTTGCCAG 61.136 66.667 2.24 0.52 45.63 4.85
5625 6877 2.036256 GGCCATGACCTTGCCAGT 59.964 61.111 0.00 0.00 44.70 4.00
5626 6878 1.607467 GGCCATGACCTTGCCAGTT 60.607 57.895 0.00 0.00 44.70 3.16
5627 6879 1.588082 GCCATGACCTTGCCAGTTG 59.412 57.895 0.00 0.00 0.00 3.16
5628 6880 0.895100 GCCATGACCTTGCCAGTTGA 60.895 55.000 0.00 0.00 0.00 3.18
5629 6881 0.883833 CCATGACCTTGCCAGTTGAC 59.116 55.000 0.00 0.00 0.00 3.18
5630 6882 0.883833 CATGACCTTGCCAGTTGACC 59.116 55.000 0.00 0.00 0.00 4.02
5631 6883 0.773644 ATGACCTTGCCAGTTGACCT 59.226 50.000 0.00 0.00 0.00 3.85
5632 6884 0.179020 TGACCTTGCCAGTTGACCTG 60.179 55.000 0.00 0.00 41.15 4.00
5640 6892 3.254629 CAGTTGACCTGGTCATGGG 57.745 57.895 28.76 16.94 42.40 4.00
5641 6893 0.692476 CAGTTGACCTGGTCATGGGA 59.308 55.000 28.76 12.41 42.40 4.37
5642 6894 1.073763 CAGTTGACCTGGTCATGGGAA 59.926 52.381 28.76 12.03 42.40 3.97
5643 6895 1.352352 AGTTGACCTGGTCATGGGAAG 59.648 52.381 28.76 0.00 42.40 3.46
5644 6896 0.038166 TTGACCTGGTCATGGGAAGC 59.962 55.000 28.76 0.00 42.40 3.86
5645 6897 1.077429 GACCTGGTCATGGGAAGCC 60.077 63.158 21.70 0.00 32.09 4.35
5646 6898 2.276740 CCTGGTCATGGGAAGCCC 59.723 66.667 0.00 0.00 45.71 5.19
5669 6921 4.011517 GGCCTGACCCGGTTCGAA 62.012 66.667 0.00 0.00 0.00 3.71
5670 6922 2.031465 GCCTGACCCGGTTCGAAA 59.969 61.111 0.00 0.00 0.00 3.46
5671 6923 1.598685 GCCTGACCCGGTTCGAAAA 60.599 57.895 0.00 0.00 0.00 2.29
5672 6924 1.167781 GCCTGACCCGGTTCGAAAAA 61.168 55.000 0.00 0.00 0.00 1.94
5673 6925 0.872388 CCTGACCCGGTTCGAAAAAG 59.128 55.000 0.00 0.00 0.00 2.27
5674 6926 0.237498 CTGACCCGGTTCGAAAAAGC 59.763 55.000 0.00 0.00 0.00 3.51
5675 6927 1.167781 TGACCCGGTTCGAAAAAGCC 61.168 55.000 0.00 0.00 0.00 4.35
5676 6928 1.859427 GACCCGGTTCGAAAAAGCCC 61.859 60.000 0.00 0.00 0.00 5.19
5677 6929 2.559330 CCGGTTCGAAAAAGCCCG 59.441 61.111 15.14 15.14 38.39 6.13
5678 6930 1.962306 CCGGTTCGAAAAAGCCCGA 60.962 57.895 21.65 0.00 41.08 5.14
5679 6931 1.205820 CGGTTCGAAAAAGCCCGAC 59.794 57.895 16.66 0.00 41.08 4.79
5680 6932 1.577922 GGTTCGAAAAAGCCCGACC 59.422 57.895 0.00 0.00 34.26 4.79
5681 6933 1.577922 GTTCGAAAAAGCCCGACCC 59.422 57.895 0.00 0.00 34.26 4.46
5682 6934 1.148723 TTCGAAAAAGCCCGACCCA 59.851 52.632 0.00 0.00 34.26 4.51
5683 6935 0.887387 TTCGAAAAAGCCCGACCCAG 60.887 55.000 0.00 0.00 34.26 4.45
5684 6936 2.962569 GAAAAAGCCCGACCCAGC 59.037 61.111 0.00 0.00 0.00 4.85
5685 6937 2.600470 AAAAAGCCCGACCCAGCC 60.600 61.111 0.00 0.00 0.00 4.85
5686 6938 4.678743 AAAAGCCCGACCCAGCCC 62.679 66.667 0.00 0.00 0.00 5.19
5707 6959 4.777854 GGCCGGGCTTGGGGATTT 62.778 66.667 22.87 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 7.021196 CCATTTACATTAACCAAGTCAAGTCG 58.979 38.462 0.00 0.00 0.00 4.18
136 166 2.076863 GTGCAAATTCCACGTAGCTCT 58.923 47.619 0.00 0.00 0.00 4.09
169 199 7.549134 CCCTTTGAAGTTTTTATAATTCTGCCC 59.451 37.037 0.00 0.00 0.00 5.36
170 200 8.094548 ACCCTTTGAAGTTTTTATAATTCTGCC 58.905 33.333 0.00 0.00 0.00 4.85
195 226 8.608844 AACATGCTAGGTATGCTTTATCTTAC 57.391 34.615 0.00 0.00 0.00 2.34
246 277 8.143193 TGTGACTGCAAAATTTATGTCTTCAAT 58.857 29.630 0.00 0.00 0.00 2.57
441 472 1.679032 GCTGGTAGGTCAATCCACACC 60.679 57.143 0.00 0.00 41.27 4.16
454 485 2.010582 GCTCCGTCTCCTGCTGGTAG 62.011 65.000 9.73 6.19 34.23 3.18
656 690 2.601702 TTCCGCCAAGATCTGCCCA 61.602 57.895 0.00 0.00 0.00 5.36
693 731 0.661483 GCAAAAACTGTCTGAGCCGC 60.661 55.000 0.00 0.00 0.00 6.53
694 732 0.662619 TGCAAAAACTGTCTGAGCCG 59.337 50.000 0.00 0.00 0.00 5.52
772 810 2.751837 CGGGCAGAAGGGAAAGCC 60.752 66.667 0.00 0.00 46.28 4.35
773 811 1.179174 AAACGGGCAGAAGGGAAAGC 61.179 55.000 0.00 0.00 0.00 3.51
774 812 0.598065 CAAACGGGCAGAAGGGAAAG 59.402 55.000 0.00 0.00 0.00 2.62
775 813 0.106419 ACAAACGGGCAGAAGGGAAA 60.106 50.000 0.00 0.00 0.00 3.13
776 814 0.106419 AACAAACGGGCAGAAGGGAA 60.106 50.000 0.00 0.00 0.00 3.97
795 833 1.705002 ATGCGATTCGGAATGGGGGA 61.705 55.000 8.18 0.00 0.00 4.81
796 834 1.228245 ATGCGATTCGGAATGGGGG 60.228 57.895 8.18 0.00 0.00 5.40
837 875 2.352225 CCCGATAGATCTTCGCTTCTGG 60.352 54.545 16.83 10.99 35.31 3.86
1246 1284 0.958822 GACAGCAAACCGAAATGGGT 59.041 50.000 0.00 0.00 42.41 4.51
1269 1307 5.182380 ACCCTACACACAAAATAAATGACCG 59.818 40.000 0.00 0.00 0.00 4.79
1293 1335 5.974370 AGATTTGTTCCTACTATTACCCCCA 59.026 40.000 0.00 0.00 0.00 4.96
1296 1338 6.706716 GCTCAGATTTGTTCCTACTATTACCC 59.293 42.308 0.00 0.00 0.00 3.69
1297 1339 7.501844 AGCTCAGATTTGTTCCTACTATTACC 58.498 38.462 0.00 0.00 0.00 2.85
1325 1367 0.895100 AAAGCAGGAATGCGGCTTCA 60.895 50.000 12.58 0.00 46.39 3.02
1353 1395 8.394877 CAAACATCAGCGACAGGTAATTTAATA 58.605 33.333 0.00 0.00 0.00 0.98
1354 1396 7.094377 ACAAACATCAGCGACAGGTAATTTAAT 60.094 33.333 0.00 0.00 0.00 1.40
1367 1409 1.577468 AACGACACAAACATCAGCGA 58.423 45.000 0.00 0.00 0.00 4.93
1384 1426 6.636850 CAGCACACCAAAATTTCAGTACTAAC 59.363 38.462 0.00 0.00 0.00 2.34
1396 1438 0.752054 CCACACCAGCACACCAAAAT 59.248 50.000 0.00 0.00 0.00 1.82
1409 1451 2.152016 GACAGCTAAGAAACCCACACC 58.848 52.381 0.00 0.00 0.00 4.16
1456 1499 1.598924 GCAGTGCTTGAAGAACAGCAC 60.599 52.381 14.96 15.00 45.07 4.40
1590 1633 5.246656 TGGATTCCTCATTGAAAACTGCAAT 59.753 36.000 3.95 0.00 36.45 3.56
1792 1835 4.590918 ACTCTAGAACCTTCATCTGTCGA 58.409 43.478 0.00 0.00 0.00 4.20
1843 1886 3.431233 CCAGCTAATGATCATGTAGCACG 59.569 47.826 30.27 24.49 42.22 5.34
1902 1945 3.957497 ACCATGACTTGCACCAAAAGTAA 59.043 39.130 0.00 0.00 37.98 2.24
1919 1962 5.909621 AGATGAAGATGTTTCCAACCATG 57.090 39.130 0.00 0.00 0.00 3.66
1945 1988 6.790319 TCTAGGGCATCTACATCTACATGTA 58.210 40.000 5.25 5.25 41.81 2.29
2035 2176 4.037208 CCATGATCTAGGCAAACAACATCC 59.963 45.833 0.00 0.00 0.00 3.51
2069 2210 2.937799 AGGCATTTGCACACACAAAAAG 59.062 40.909 4.74 0.00 42.45 2.27
2082 2224 5.813672 CACATTCCTTCCATTTAGGCATTTG 59.186 40.000 0.00 0.00 37.29 2.32
2110 2252 6.243216 AGGTTCCATATTAAGTAAGGCGAA 57.757 37.500 0.00 0.00 0.00 4.70
2156 2298 7.063593 TCTAGAACCTATTACTGAGCTCATGT 58.936 38.462 18.63 18.59 0.00 3.21
2159 2301 9.456147 GATATCTAGAACCTATTACTGAGCTCA 57.544 37.037 17.19 17.19 0.00 4.26
2311 2455 0.899717 TGATTGGGCCAAGAAGCACC 60.900 55.000 25.16 7.76 34.27 5.01
2364 2508 0.107831 CGACCAACTCCCTTGTTCCA 59.892 55.000 0.00 0.00 0.00 3.53
2437 2581 7.615403 TGAGAGCATGAACTAGACAAAATAGT 58.385 34.615 0.00 0.00 34.96 2.12
2670 2814 3.526899 TCTGAAAGTCATACCTGGGGAA 58.473 45.455 0.00 0.00 33.76 3.97
2739 2883 1.137872 CAGCCAGGAGTTAGTAGCCAG 59.862 57.143 0.00 0.00 0.00 4.85
2821 2965 7.626452 GCAGAAGATACAATTAAGACCAACACC 60.626 40.741 0.00 0.00 0.00 4.16
2872 3018 2.452600 AACTTTGTCTGCCTGGGAAA 57.547 45.000 0.00 0.00 0.00 3.13
2894 3040 4.538490 TGGAACCTCATTGGGTATACAACT 59.462 41.667 5.01 0.00 38.87 3.16
3081 3229 7.827701 TCTTCAAACTCATGAATCTAGTACGT 58.172 34.615 0.00 0.00 38.55 3.57
3155 3303 3.633986 GCTCCCTGCAAATTGTAGCTAAT 59.366 43.478 5.53 0.00 42.31 1.73
3157 3305 2.643551 GCTCCCTGCAAATTGTAGCTA 58.356 47.619 5.53 0.00 42.31 3.32
3425 3573 9.247861 AGAAAGGCTGTGAGACAAATTTATATT 57.752 29.630 0.00 0.00 0.00 1.28
3492 3640 6.433093 ACAAACTCCAAACTGTTTTGTCTAGT 59.567 34.615 2.41 0.00 40.61 2.57
3546 3694 5.006552 TGAAAACAAGGACGTTACCTTTACG 59.993 40.000 5.82 0.00 46.61 3.18
3730 3920 0.930726 TTCCCAGTTGGTTCCAAGGT 59.069 50.000 4.37 0.00 34.77 3.50
3774 3964 5.788450 AGTGTTTCACAAAATTGACACCAA 58.212 33.333 10.46 0.00 36.74 3.67
4048 4288 4.552184 GCCGAAAAGGTACTGAATAATCGC 60.552 45.833 0.00 0.00 40.86 4.58
4127 4368 6.757897 TTTTTACCTGGCTAACATCATGAG 57.242 37.500 0.09 0.00 0.00 2.90
4263 4544 3.695060 GACTCGAGACTTCCCATGACTAA 59.305 47.826 21.68 0.00 0.00 2.24
4306 4587 9.129209 GCCTTTTAAAGCTTAAGTCAATAACAG 57.871 33.333 0.00 0.00 0.00 3.16
4450 4741 3.001939 CCATACGCTTTCATTTACGGGAC 59.998 47.826 0.00 0.00 0.00 4.46
4669 4961 2.385875 CGTGCTTCATGCTCTGCGT 61.386 57.895 0.00 0.00 43.37 5.24
4703 4995 3.658709 CTTGTCTGAGTCTTCCTTCACC 58.341 50.000 0.00 0.00 0.00 4.02
4704 4996 3.063485 GCTTGTCTGAGTCTTCCTTCAC 58.937 50.000 0.00 0.00 0.00 3.18
4820 5113 2.106511 ACAGTAGGGTGCTCATGTTGTT 59.893 45.455 0.00 0.00 0.00 2.83
4900 5193 6.627087 AAATCTCACCTATTCCTCAAGTCA 57.373 37.500 0.00 0.00 0.00 3.41
4941 5234 2.742774 CGTCAGGACATATGCATCGAA 58.257 47.619 0.19 0.00 0.00 3.71
4945 5238 3.969287 ATAGCGTCAGGACATATGCAT 57.031 42.857 3.79 3.79 0.00 3.96
4993 5286 5.296780 GCAACCTGCTGCATACTCTAATTTA 59.703 40.000 1.31 0.00 42.17 1.40
5005 5300 2.668212 GGTACGCAACCTGCTGCA 60.668 61.111 0.88 0.88 45.75 4.41
5047 5342 5.136828 TGGTGCTCTTCCTTTTGTAAATGA 58.863 37.500 0.00 0.00 0.00 2.57
5078 5373 3.883489 GGGTAGTCAAGTGCTGTTTCTTT 59.117 43.478 0.00 0.00 0.00 2.52
5092 5387 1.404986 GCATTGTGTAGCGGGTAGTCA 60.405 52.381 0.00 0.00 0.00 3.41
5093 5388 1.287425 GCATTGTGTAGCGGGTAGTC 58.713 55.000 0.00 0.00 0.00 2.59
5099 5394 1.506262 GGGTTGCATTGTGTAGCGG 59.494 57.895 0.00 0.00 0.00 5.52
5127 5422 3.704231 AAGCTACGGGCCATGGCAG 62.704 63.158 36.56 29.90 44.11 4.85
5133 5428 2.791347 TGAAATAAAGCTACGGGCCA 57.209 45.000 4.39 0.00 43.05 5.36
5134 5429 3.211045 TGATGAAATAAAGCTACGGGCC 58.789 45.455 0.00 0.00 43.05 5.80
5136 5431 4.881850 ACCTTGATGAAATAAAGCTACGGG 59.118 41.667 0.00 0.00 33.10 5.28
5167 5462 3.055458 TCGCAACTGGGATCAATCTGTTA 60.055 43.478 0.00 0.00 31.73 2.41
5169 5464 1.278985 TCGCAACTGGGATCAATCTGT 59.721 47.619 0.00 0.00 31.73 3.41
5170 5465 2.028420 TCGCAACTGGGATCAATCTG 57.972 50.000 0.00 0.00 31.73 2.90
5207 6458 4.251268 GGCGTCACAGATAACCTTACTTT 58.749 43.478 0.00 0.00 0.00 2.66
5235 6486 1.154225 CCGCCGTTCAGACATTTGC 60.154 57.895 0.00 0.00 0.00 3.68
5252 6503 5.065474 TGAACGAAAAATTGATCCGGATACC 59.935 40.000 19.15 6.56 0.00 2.73
5260 6511 3.057609 CCGCGTTGAACGAAAAATTGATC 59.942 43.478 23.12 0.00 46.05 2.92
5316 6568 4.334759 CCAGATAGTGCCAATTCACAAGAG 59.665 45.833 0.67 0.00 39.35 2.85
5320 6572 2.575735 TCCCAGATAGTGCCAATTCACA 59.424 45.455 0.67 0.00 39.35 3.58
5321 6573 3.281727 TCCCAGATAGTGCCAATTCAC 57.718 47.619 0.00 0.00 37.24 3.18
5323 6575 2.952310 GGTTCCCAGATAGTGCCAATTC 59.048 50.000 0.00 0.00 0.00 2.17
5330 6582 4.547671 TCTCCTTAGGTTCCCAGATAGTG 58.452 47.826 0.00 0.00 0.00 2.74
5333 6585 5.970640 ACAAATCTCCTTAGGTTCCCAGATA 59.029 40.000 0.00 0.00 0.00 1.98
5335 6587 4.175962 ACAAATCTCCTTAGGTTCCCAGA 58.824 43.478 0.00 0.00 0.00 3.86
5336 6588 4.576330 ACAAATCTCCTTAGGTTCCCAG 57.424 45.455 0.00 0.00 0.00 4.45
5338 6590 5.672503 GTCTACAAATCTCCTTAGGTTCCC 58.327 45.833 0.00 0.00 0.00 3.97
5339 6591 5.105432 ACGTCTACAAATCTCCTTAGGTTCC 60.105 44.000 0.00 0.00 0.00 3.62
5341 6593 5.997384 ACGTCTACAAATCTCCTTAGGTT 57.003 39.130 0.00 0.00 0.00 3.50
5342 6594 5.337330 CCAACGTCTACAAATCTCCTTAGGT 60.337 44.000 0.00 0.00 0.00 3.08
5343 6595 5.105473 TCCAACGTCTACAAATCTCCTTAGG 60.105 44.000 0.00 0.00 0.00 2.69
5344 6596 5.805994 GTCCAACGTCTACAAATCTCCTTAG 59.194 44.000 0.00 0.00 0.00 2.18
5345 6597 5.479375 AGTCCAACGTCTACAAATCTCCTTA 59.521 40.000 0.00 0.00 0.00 2.69
5346 6598 4.283722 AGTCCAACGTCTACAAATCTCCTT 59.716 41.667 0.00 0.00 0.00 3.36
5347 6599 3.833070 AGTCCAACGTCTACAAATCTCCT 59.167 43.478 0.00 0.00 0.00 3.69
5348 6600 4.189639 AGTCCAACGTCTACAAATCTCC 57.810 45.455 0.00 0.00 0.00 3.71
5349 6601 7.972277 TGTATTAGTCCAACGTCTACAAATCTC 59.028 37.037 0.00 0.00 0.00 2.75
5350 6602 7.833786 TGTATTAGTCCAACGTCTACAAATCT 58.166 34.615 0.00 0.00 0.00 2.40
5351 6603 8.470040 TTGTATTAGTCCAACGTCTACAAATC 57.530 34.615 0.00 0.00 0.00 2.17
5352 6604 7.548075 CCTTGTATTAGTCCAACGTCTACAAAT 59.452 37.037 0.00 0.00 30.01 2.32
5353 6605 6.869913 CCTTGTATTAGTCCAACGTCTACAAA 59.130 38.462 0.00 0.00 30.01 2.83
5354 6606 6.392354 CCTTGTATTAGTCCAACGTCTACAA 58.608 40.000 0.00 0.00 0.00 2.41
5355 6607 5.105635 CCCTTGTATTAGTCCAACGTCTACA 60.106 44.000 0.00 0.00 0.00 2.74
5356 6608 5.126061 TCCCTTGTATTAGTCCAACGTCTAC 59.874 44.000 0.00 0.00 0.00 2.59
5357 6609 5.263599 TCCCTTGTATTAGTCCAACGTCTA 58.736 41.667 0.00 0.00 0.00 2.59
5358 6610 4.091549 TCCCTTGTATTAGTCCAACGTCT 58.908 43.478 0.00 0.00 0.00 4.18
5359 6611 4.460948 TCCCTTGTATTAGTCCAACGTC 57.539 45.455 0.00 0.00 0.00 4.34
5360 6612 4.895668 TTCCCTTGTATTAGTCCAACGT 57.104 40.909 0.00 0.00 0.00 3.99
5361 6613 4.092383 CGTTTCCCTTGTATTAGTCCAACG 59.908 45.833 0.00 0.00 0.00 4.10
5362 6614 4.999311 ACGTTTCCCTTGTATTAGTCCAAC 59.001 41.667 0.00 0.00 0.00 3.77
5363 6615 5.231702 ACGTTTCCCTTGTATTAGTCCAA 57.768 39.130 0.00 0.00 0.00 3.53
5364 6616 4.895668 ACGTTTCCCTTGTATTAGTCCA 57.104 40.909 0.00 0.00 0.00 4.02
5365 6617 5.471116 ACAAACGTTTCCCTTGTATTAGTCC 59.529 40.000 11.37 0.00 31.63 3.85
5366 6618 6.368213 CACAAACGTTTCCCTTGTATTAGTC 58.632 40.000 11.37 0.00 32.16 2.59
5367 6619 5.239963 CCACAAACGTTTCCCTTGTATTAGT 59.760 40.000 11.37 0.00 32.16 2.24
5368 6620 5.695818 CCACAAACGTTTCCCTTGTATTAG 58.304 41.667 11.37 0.00 32.16 1.73
5369 6621 4.023021 GCCACAAACGTTTCCCTTGTATTA 60.023 41.667 11.37 0.00 32.16 0.98
5370 6622 3.243602 GCCACAAACGTTTCCCTTGTATT 60.244 43.478 11.37 0.00 32.16 1.89
5371 6623 2.295070 GCCACAAACGTTTCCCTTGTAT 59.705 45.455 11.37 0.00 32.16 2.29
5372 6624 1.677052 GCCACAAACGTTTCCCTTGTA 59.323 47.619 11.37 0.00 32.16 2.41
5373 6625 0.458260 GCCACAAACGTTTCCCTTGT 59.542 50.000 11.37 3.38 33.62 3.16
5374 6626 0.249280 GGCCACAAACGTTTCCCTTG 60.249 55.000 11.37 2.65 0.00 3.61
5375 6627 1.730451 CGGCCACAAACGTTTCCCTT 61.730 55.000 11.37 0.00 0.00 3.95
5376 6628 2.190841 CGGCCACAAACGTTTCCCT 61.191 57.895 11.37 0.00 0.00 4.20
5377 6629 2.333581 CGGCCACAAACGTTTCCC 59.666 61.111 11.37 8.33 0.00 3.97
5378 6630 2.333581 CCGGCCACAAACGTTTCC 59.666 61.111 11.37 8.47 0.00 3.13
5379 6631 1.298788 CACCGGCCACAAACGTTTC 60.299 57.895 11.37 0.00 0.00 2.78
5380 6632 2.802106 CACCGGCCACAAACGTTT 59.198 55.556 7.96 7.96 0.00 3.60
5381 6633 3.894947 GCACCGGCCACAAACGTT 61.895 61.111 0.00 0.00 0.00 3.99
5403 6655 4.796495 ACCGGCCCAATCTTCGGC 62.796 66.667 0.00 0.00 45.65 5.54
5404 6656 2.513897 GACCGGCCCAATCTTCGG 60.514 66.667 0.00 0.00 46.95 4.30
5405 6657 2.890474 CGACCGGCCCAATCTTCG 60.890 66.667 0.00 0.00 0.00 3.79
5406 6658 3.202706 GCGACCGGCCCAATCTTC 61.203 66.667 0.00 0.00 34.80 2.87
5407 6659 3.344137 ATGCGACCGGCCCAATCTT 62.344 57.895 0.00 0.00 42.61 2.40
5408 6660 3.797353 ATGCGACCGGCCCAATCT 61.797 61.111 0.00 0.00 42.61 2.40
5409 6661 3.585990 CATGCGACCGGCCCAATC 61.586 66.667 0.00 0.00 42.61 2.67
5422 6674 1.082561 CATCGTACATGCGGCATGC 60.083 57.895 35.80 22.52 44.80 4.06
5423 6675 0.879839 TCCATCGTACATGCGGCATG 60.880 55.000 34.64 34.64 46.18 4.06
5424 6676 0.179059 TTCCATCGTACATGCGGCAT 60.179 50.000 10.23 10.23 0.00 4.40
5425 6677 0.391793 TTTCCATCGTACATGCGGCA 60.392 50.000 4.58 4.58 0.00 5.69
5426 6678 0.304705 CTTTCCATCGTACATGCGGC 59.695 55.000 0.00 0.00 0.00 6.53
5427 6679 1.934589 TCTTTCCATCGTACATGCGG 58.065 50.000 0.00 0.00 0.00 5.69
5428 6680 2.285026 CGTTCTTTCCATCGTACATGCG 60.285 50.000 0.00 0.00 0.00 4.73
5429 6681 2.927477 TCGTTCTTTCCATCGTACATGC 59.073 45.455 0.00 0.00 0.00 4.06
5430 6682 4.085568 CGATCGTTCTTTCCATCGTACATG 60.086 45.833 7.03 0.00 34.69 3.21
5431 6683 4.042398 CGATCGTTCTTTCCATCGTACAT 58.958 43.478 7.03 0.00 34.69 2.29
5432 6684 3.127376 TCGATCGTTCTTTCCATCGTACA 59.873 43.478 15.94 0.00 39.33 2.90
5433 6685 3.688272 TCGATCGTTCTTTCCATCGTAC 58.312 45.455 15.94 0.00 39.33 3.67
5434 6686 3.376234 ACTCGATCGTTCTTTCCATCGTA 59.624 43.478 15.94 0.00 39.33 3.43
5435 6687 2.163815 ACTCGATCGTTCTTTCCATCGT 59.836 45.455 15.94 0.00 39.33 3.73
5436 6688 2.531912 CACTCGATCGTTCTTTCCATCG 59.468 50.000 15.94 0.00 39.60 3.84
5437 6689 2.282820 GCACTCGATCGTTCTTTCCATC 59.717 50.000 15.94 0.00 0.00 3.51
5438 6690 2.093973 AGCACTCGATCGTTCTTTCCAT 60.094 45.455 15.94 0.00 0.00 3.41
5439 6691 1.272490 AGCACTCGATCGTTCTTTCCA 59.728 47.619 15.94 0.00 0.00 3.53
5440 6692 1.921230 GAGCACTCGATCGTTCTTTCC 59.079 52.381 15.94 0.00 0.00 3.13
5441 6693 1.921230 GGAGCACTCGATCGTTCTTTC 59.079 52.381 15.94 8.77 0.00 2.62
5442 6694 1.546476 AGGAGCACTCGATCGTTCTTT 59.454 47.619 15.94 0.00 0.00 2.52
5443 6695 1.135257 CAGGAGCACTCGATCGTTCTT 60.135 52.381 15.94 0.00 0.00 2.52
5444 6696 0.453793 CAGGAGCACTCGATCGTTCT 59.546 55.000 15.94 7.84 0.00 3.01
5445 6697 0.526524 CCAGGAGCACTCGATCGTTC 60.527 60.000 15.94 6.42 0.00 3.95
5446 6698 1.513158 CCAGGAGCACTCGATCGTT 59.487 57.895 15.94 0.04 0.00 3.85
5447 6699 3.069980 GCCAGGAGCACTCGATCGT 62.070 63.158 15.94 0.00 42.97 3.73
5448 6700 2.279120 GCCAGGAGCACTCGATCG 60.279 66.667 9.36 9.36 42.97 3.69
5449 6701 2.107953 GGCCAGGAGCACTCGATC 59.892 66.667 0.00 0.00 46.50 3.69
5450 6702 3.474570 GGGCCAGGAGCACTCGAT 61.475 66.667 4.39 0.00 43.83 3.59
5456 6708 4.704103 ACGAGAGGGCCAGGAGCA 62.704 66.667 6.18 0.00 46.50 4.26
5457 6709 4.154347 CACGAGAGGGCCAGGAGC 62.154 72.222 6.18 0.00 42.60 4.70
5458 6710 1.760086 ATCACGAGAGGGCCAGGAG 60.760 63.158 6.18 0.00 0.00 3.69
5459 6711 2.060383 CATCACGAGAGGGCCAGGA 61.060 63.158 6.18 0.00 0.00 3.86
5460 6712 2.060383 TCATCACGAGAGGGCCAGG 61.060 63.158 6.18 0.00 0.00 4.45
5461 6713 1.142748 GTCATCACGAGAGGGCCAG 59.857 63.158 6.18 0.00 0.00 4.85
5462 6714 3.298958 GTCATCACGAGAGGGCCA 58.701 61.111 6.18 0.00 0.00 5.36
5472 6724 0.317160 TCCACAGGACACGTCATCAC 59.683 55.000 0.00 0.00 0.00 3.06
5473 6725 2.740121 TCCACAGGACACGTCATCA 58.260 52.632 0.00 0.00 0.00 3.07
5483 6735 3.936203 GTGCACGGGTCCACAGGA 61.936 66.667 0.00 0.00 32.37 3.86
5499 6751 4.658786 AAGGGAGGACAGGGCGGT 62.659 66.667 0.00 0.00 0.00 5.68
5500 6752 3.787001 GAAGGGAGGACAGGGCGG 61.787 72.222 0.00 0.00 0.00 6.13
5501 6753 0.976073 TAAGAAGGGAGGACAGGGCG 60.976 60.000 0.00 0.00 0.00 6.13
5502 6754 1.418264 GATAAGAAGGGAGGACAGGGC 59.582 57.143 0.00 0.00 0.00 5.19
5503 6755 2.050918 GGATAAGAAGGGAGGACAGGG 58.949 57.143 0.00 0.00 0.00 4.45
5504 6756 2.764269 TGGATAAGAAGGGAGGACAGG 58.236 52.381 0.00 0.00 0.00 4.00
5505 6757 3.326297 GGATGGATAAGAAGGGAGGACAG 59.674 52.174 0.00 0.00 0.00 3.51
5506 6758 3.311327 TGGATGGATAAGAAGGGAGGACA 60.311 47.826 0.00 0.00 0.00 4.02
5507 6759 3.071747 GTGGATGGATAAGAAGGGAGGAC 59.928 52.174 0.00 0.00 0.00 3.85
5508 6760 3.311327 TGTGGATGGATAAGAAGGGAGGA 60.311 47.826 0.00 0.00 0.00 3.71
5509 6761 3.048600 TGTGGATGGATAAGAAGGGAGG 58.951 50.000 0.00 0.00 0.00 4.30
5510 6762 3.455910 TGTGTGGATGGATAAGAAGGGAG 59.544 47.826 0.00 0.00 0.00 4.30
5511 6763 3.459828 TGTGTGGATGGATAAGAAGGGA 58.540 45.455 0.00 0.00 0.00 4.20
5512 6764 3.931907 TGTGTGGATGGATAAGAAGGG 57.068 47.619 0.00 0.00 0.00 3.95
5513 6765 5.688807 AGATTGTGTGGATGGATAAGAAGG 58.311 41.667 0.00 0.00 0.00 3.46
5514 6766 8.915057 ATAAGATTGTGTGGATGGATAAGAAG 57.085 34.615 0.00 0.00 0.00 2.85
5515 6767 7.939039 GGATAAGATTGTGTGGATGGATAAGAA 59.061 37.037 0.00 0.00 0.00 2.52
5516 6768 7.293299 AGGATAAGATTGTGTGGATGGATAAGA 59.707 37.037 0.00 0.00 0.00 2.10
5517 6769 7.456725 AGGATAAGATTGTGTGGATGGATAAG 58.543 38.462 0.00 0.00 0.00 1.73
5518 6770 7.293299 AGAGGATAAGATTGTGTGGATGGATAA 59.707 37.037 0.00 0.00 0.00 1.75
5519 6771 6.789457 AGAGGATAAGATTGTGTGGATGGATA 59.211 38.462 0.00 0.00 0.00 2.59
5520 6772 5.610132 AGAGGATAAGATTGTGTGGATGGAT 59.390 40.000 0.00 0.00 0.00 3.41
5521 6773 4.971282 AGAGGATAAGATTGTGTGGATGGA 59.029 41.667 0.00 0.00 0.00 3.41
5522 6774 5.301835 AGAGGATAAGATTGTGTGGATGG 57.698 43.478 0.00 0.00 0.00 3.51
5523 6775 5.303971 GGAGAGGATAAGATTGTGTGGATG 58.696 45.833 0.00 0.00 0.00 3.51
5524 6776 4.349342 GGGAGAGGATAAGATTGTGTGGAT 59.651 45.833 0.00 0.00 0.00 3.41
5525 6777 3.711704 GGGAGAGGATAAGATTGTGTGGA 59.288 47.826 0.00 0.00 0.00 4.02
5526 6778 3.713764 AGGGAGAGGATAAGATTGTGTGG 59.286 47.826 0.00 0.00 0.00 4.17
5527 6779 4.202305 GGAGGGAGAGGATAAGATTGTGTG 60.202 50.000 0.00 0.00 0.00 3.82
5528 6780 3.970640 GGAGGGAGAGGATAAGATTGTGT 59.029 47.826 0.00 0.00 0.00 3.72
5529 6781 3.969976 TGGAGGGAGAGGATAAGATTGTG 59.030 47.826 0.00 0.00 0.00 3.33
5530 6782 3.970640 GTGGAGGGAGAGGATAAGATTGT 59.029 47.826 0.00 0.00 0.00 2.71
5531 6783 4.040217 CAGTGGAGGGAGAGGATAAGATTG 59.960 50.000 0.00 0.00 0.00 2.67
5532 6784 4.230455 CAGTGGAGGGAGAGGATAAGATT 58.770 47.826 0.00 0.00 0.00 2.40
5533 6785 3.208692 ACAGTGGAGGGAGAGGATAAGAT 59.791 47.826 0.00 0.00 0.00 2.40
5534 6786 2.587777 ACAGTGGAGGGAGAGGATAAGA 59.412 50.000 0.00 0.00 0.00 2.10
5535 6787 3.039252 ACAGTGGAGGGAGAGGATAAG 57.961 52.381 0.00 0.00 0.00 1.73
5536 6788 3.491766 AACAGTGGAGGGAGAGGATAA 57.508 47.619 0.00 0.00 0.00 1.75
5537 6789 3.012959 AGAAACAGTGGAGGGAGAGGATA 59.987 47.826 0.00 0.00 0.00 2.59
5538 6790 2.192263 GAAACAGTGGAGGGAGAGGAT 58.808 52.381 0.00 0.00 0.00 3.24
5539 6791 1.150135 AGAAACAGTGGAGGGAGAGGA 59.850 52.381 0.00 0.00 0.00 3.71
5540 6792 1.552792 GAGAAACAGTGGAGGGAGAGG 59.447 57.143 0.00 0.00 0.00 3.69
5541 6793 2.534990 AGAGAAACAGTGGAGGGAGAG 58.465 52.381 0.00 0.00 0.00 3.20
5542 6794 2.704190 AGAGAAACAGTGGAGGGAGA 57.296 50.000 0.00 0.00 0.00 3.71
5543 6795 2.027653 GGAAGAGAAACAGTGGAGGGAG 60.028 54.545 0.00 0.00 0.00 4.30
5544 6796 1.978580 GGAAGAGAAACAGTGGAGGGA 59.021 52.381 0.00 0.00 0.00 4.20
5545 6797 1.003696 GGGAAGAGAAACAGTGGAGGG 59.996 57.143 0.00 0.00 0.00 4.30
5546 6798 1.003696 GGGGAAGAGAAACAGTGGAGG 59.996 57.143 0.00 0.00 0.00 4.30
5547 6799 1.981495 AGGGGAAGAGAAACAGTGGAG 59.019 52.381 0.00 0.00 0.00 3.86
5548 6800 1.978580 GAGGGGAAGAGAAACAGTGGA 59.021 52.381 0.00 0.00 0.00 4.02
5549 6801 1.699634 TGAGGGGAAGAGAAACAGTGG 59.300 52.381 0.00 0.00 0.00 4.00
5550 6802 3.492102 TTGAGGGGAAGAGAAACAGTG 57.508 47.619 0.00 0.00 0.00 3.66
5551 6803 3.913163 AGATTGAGGGGAAGAGAAACAGT 59.087 43.478 0.00 0.00 0.00 3.55
5552 6804 4.512484 GAGATTGAGGGGAAGAGAAACAG 58.488 47.826 0.00 0.00 0.00 3.16
5553 6805 3.055819 CGAGATTGAGGGGAAGAGAAACA 60.056 47.826 0.00 0.00 0.00 2.83
5554 6806 3.526534 CGAGATTGAGGGGAAGAGAAAC 58.473 50.000 0.00 0.00 0.00 2.78
5555 6807 2.093447 GCGAGATTGAGGGGAAGAGAAA 60.093 50.000 0.00 0.00 0.00 2.52
5556 6808 1.482593 GCGAGATTGAGGGGAAGAGAA 59.517 52.381 0.00 0.00 0.00 2.87
5557 6809 1.115467 GCGAGATTGAGGGGAAGAGA 58.885 55.000 0.00 0.00 0.00 3.10
5558 6810 0.105778 GGCGAGATTGAGGGGAAGAG 59.894 60.000 0.00 0.00 0.00 2.85
5559 6811 0.325671 AGGCGAGATTGAGGGGAAGA 60.326 55.000 0.00 0.00 0.00 2.87
5560 6812 0.105778 GAGGCGAGATTGAGGGGAAG 59.894 60.000 0.00 0.00 0.00 3.46
5561 6813 1.338136 GGAGGCGAGATTGAGGGGAA 61.338 60.000 0.00 0.00 0.00 3.97
5562 6814 1.762460 GGAGGCGAGATTGAGGGGA 60.762 63.158 0.00 0.00 0.00 4.81
5563 6815 1.753368 GAGGAGGCGAGATTGAGGGG 61.753 65.000 0.00 0.00 0.00 4.79
5564 6816 1.745264 GAGGAGGCGAGATTGAGGG 59.255 63.158 0.00 0.00 0.00 4.30
5565 6817 0.758685 AGGAGGAGGCGAGATTGAGG 60.759 60.000 0.00 0.00 0.00 3.86
5566 6818 0.673437 GAGGAGGAGGCGAGATTGAG 59.327 60.000 0.00 0.00 0.00 3.02
5567 6819 0.260230 AGAGGAGGAGGCGAGATTGA 59.740 55.000 0.00 0.00 0.00 2.57
5568 6820 0.673437 GAGAGGAGGAGGCGAGATTG 59.327 60.000 0.00 0.00 0.00 2.67
5569 6821 0.555769 AGAGAGGAGGAGGCGAGATT 59.444 55.000 0.00 0.00 0.00 2.40
5570 6822 0.178992 CAGAGAGGAGGAGGCGAGAT 60.179 60.000 0.00 0.00 0.00 2.75
5571 6823 1.225983 CAGAGAGGAGGAGGCGAGA 59.774 63.158 0.00 0.00 0.00 4.04
5572 6824 2.489275 GCAGAGAGGAGGAGGCGAG 61.489 68.421 0.00 0.00 0.00 5.03
5573 6825 2.441164 GCAGAGAGGAGGAGGCGA 60.441 66.667 0.00 0.00 0.00 5.54
5574 6826 3.535962 GGCAGAGAGGAGGAGGCG 61.536 72.222 0.00 0.00 0.00 5.52
5575 6827 2.042025 AGGCAGAGAGGAGGAGGC 60.042 66.667 0.00 0.00 0.00 4.70
5576 6828 0.032217 AAGAGGCAGAGAGGAGGAGG 60.032 60.000 0.00 0.00 0.00 4.30
5577 6829 1.063717 AGAAGAGGCAGAGAGGAGGAG 60.064 57.143 0.00 0.00 0.00 3.69
5578 6830 1.006813 AGAAGAGGCAGAGAGGAGGA 58.993 55.000 0.00 0.00 0.00 3.71
5579 6831 1.756538 GAAGAAGAGGCAGAGAGGAGG 59.243 57.143 0.00 0.00 0.00 4.30
5580 6832 1.756538 GGAAGAAGAGGCAGAGAGGAG 59.243 57.143 0.00 0.00 0.00 3.69
5581 6833 1.621072 GGGAAGAAGAGGCAGAGAGGA 60.621 57.143 0.00 0.00 0.00 3.71
5582 6834 0.829990 GGGAAGAAGAGGCAGAGAGG 59.170 60.000 0.00 0.00 0.00 3.69
5583 6835 0.829990 GGGGAAGAAGAGGCAGAGAG 59.170 60.000 0.00 0.00 0.00 3.20
5584 6836 0.117140 TGGGGAAGAAGAGGCAGAGA 59.883 55.000 0.00 0.00 0.00 3.10
5585 6837 0.251634 GTGGGGAAGAAGAGGCAGAG 59.748 60.000 0.00 0.00 0.00 3.35
5586 6838 0.473694 TGTGGGGAAGAAGAGGCAGA 60.474 55.000 0.00 0.00 0.00 4.26
5587 6839 0.035630 CTGTGGGGAAGAAGAGGCAG 60.036 60.000 0.00 0.00 0.00 4.85
5588 6840 2.069776 CTGTGGGGAAGAAGAGGCA 58.930 57.895 0.00 0.00 0.00 4.75
5589 6841 1.377856 GCTGTGGGGAAGAAGAGGC 60.378 63.158 0.00 0.00 0.00 4.70
5590 6842 1.078848 CGCTGTGGGGAAGAAGAGG 60.079 63.158 0.00 0.00 0.00 3.69
5591 6843 1.078848 CCGCTGTGGGGAAGAAGAG 60.079 63.158 0.00 0.00 37.91 2.85
5592 6844 3.068881 CCGCTGTGGGGAAGAAGA 58.931 61.111 0.00 0.00 37.91 2.87
5593 6845 2.747855 GCCGCTGTGGGGAAGAAG 60.748 66.667 9.65 0.00 37.91 2.85
5594 6846 4.344865 GGCCGCTGTGGGGAAGAA 62.345 66.667 9.65 0.00 37.91 2.52
5596 6848 4.431131 ATGGCCGCTGTGGGGAAG 62.431 66.667 9.65 0.00 37.91 3.46
5597 6849 4.738998 CATGGCCGCTGTGGGGAA 62.739 66.667 9.65 0.00 37.91 3.97
5601 6853 3.925630 AAGGTCATGGCCGCTGTGG 62.926 63.158 11.52 2.05 42.50 4.17
5602 6854 2.360350 AAGGTCATGGCCGCTGTG 60.360 61.111 11.52 0.00 0.00 3.66
5603 6855 2.360350 CAAGGTCATGGCCGCTGT 60.360 61.111 11.52 0.00 0.00 4.40
5604 6856 3.818787 GCAAGGTCATGGCCGCTG 61.819 66.667 11.52 13.64 0.00 5.18
5609 6861 0.895100 TCAACTGGCAAGGTCATGGC 60.895 55.000 0.00 0.00 45.44 4.40
5610 6862 0.883833 GTCAACTGGCAAGGTCATGG 59.116 55.000 0.00 0.00 0.00 3.66
5611 6863 0.883833 GGTCAACTGGCAAGGTCATG 59.116 55.000 0.00 0.00 0.00 3.07
5612 6864 0.773644 AGGTCAACTGGCAAGGTCAT 59.226 50.000 0.00 0.00 0.00 3.06
5613 6865 0.179020 CAGGTCAACTGGCAAGGTCA 60.179 55.000 0.00 0.00 43.70 4.02
5614 6866 2.633860 CAGGTCAACTGGCAAGGTC 58.366 57.895 0.00 0.00 43.70 3.85
5615 6867 4.907457 CAGGTCAACTGGCAAGGT 57.093 55.556 0.00 0.00 43.70 3.50
5622 6874 0.692476 TCCCATGACCAGGTCAACTG 59.308 55.000 26.53 19.71 45.96 3.16
5623 6875 1.352352 CTTCCCATGACCAGGTCAACT 59.648 52.381 26.53 8.22 45.96 3.16
5624 6876 1.826385 CTTCCCATGACCAGGTCAAC 58.174 55.000 26.53 0.00 45.96 3.18
5625 6877 0.038166 GCTTCCCATGACCAGGTCAA 59.962 55.000 26.53 7.01 45.96 3.18
5626 6878 1.685224 GCTTCCCATGACCAGGTCA 59.315 57.895 25.06 25.06 46.90 4.02
5627 6879 1.077429 GGCTTCCCATGACCAGGTC 60.077 63.158 13.35 13.35 0.00 3.85
5628 6880 2.616458 GGGCTTCCCATGACCAGGT 61.616 63.158 0.00 0.00 44.65 4.00
5629 6881 2.276740 GGGCTTCCCATGACCAGG 59.723 66.667 0.00 0.00 44.65 4.45
5630 6882 2.124570 CGGGCTTCCCATGACCAG 60.125 66.667 0.00 0.00 45.83 4.00
5631 6883 3.727258 CCGGGCTTCCCATGACCA 61.727 66.667 0.00 0.00 45.83 4.02
5652 6904 3.540367 TTTCGAACCGGGTCAGGCC 62.540 63.158 21.79 0.00 33.69 5.19
5653 6905 1.167781 TTTTTCGAACCGGGTCAGGC 61.168 55.000 21.79 0.00 33.69 4.85
5654 6906 0.872388 CTTTTTCGAACCGGGTCAGG 59.128 55.000 21.79 3.82 37.30 3.86
5655 6907 0.237498 GCTTTTTCGAACCGGGTCAG 59.763 55.000 21.79 12.65 0.00 3.51
5656 6908 1.167781 GGCTTTTTCGAACCGGGTCA 61.168 55.000 21.79 3.64 0.00 4.02
5657 6909 1.577922 GGCTTTTTCGAACCGGGTC 59.422 57.895 10.31 10.31 0.00 4.46
5658 6910 1.900016 GGGCTTTTTCGAACCGGGT 60.900 57.895 6.32 0.00 0.00 5.28
5659 6911 2.959372 GGGCTTTTTCGAACCGGG 59.041 61.111 6.32 0.00 0.00 5.73
5660 6912 1.962306 TCGGGCTTTTTCGAACCGG 60.962 57.895 20.04 12.39 44.36 5.28
5661 6913 1.205820 GTCGGGCTTTTTCGAACCG 59.794 57.895 15.77 15.77 45.52 4.44
5662 6914 1.577922 GGTCGGGCTTTTTCGAACC 59.422 57.895 0.00 0.00 37.15 3.62
5663 6915 1.167781 TGGGTCGGGCTTTTTCGAAC 61.168 55.000 0.00 0.00 41.80 3.95
5664 6916 0.887387 CTGGGTCGGGCTTTTTCGAA 60.887 55.000 0.00 0.00 37.14 3.71
5665 6917 1.302192 CTGGGTCGGGCTTTTTCGA 60.302 57.895 0.00 0.00 0.00 3.71
5666 6918 2.978018 GCTGGGTCGGGCTTTTTCG 61.978 63.158 0.00 0.00 0.00 3.46
5667 6919 2.636412 GGCTGGGTCGGGCTTTTTC 61.636 63.158 0.00 0.00 32.26 2.29
5668 6920 2.600470 GGCTGGGTCGGGCTTTTT 60.600 61.111 0.00 0.00 32.26 1.94
5669 6921 4.678743 GGGCTGGGTCGGGCTTTT 62.679 66.667 0.50 0.00 35.52 2.27
5690 6942 4.777854 AAATCCCCAAGCCCGGCC 62.778 66.667 5.55 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.