Multiple sequence alignment - TraesCS3B01G262700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G262700 chr3B 100.000 2671 0 0 1 2671 421533121 421530451 0.000000e+00 4933.0
1 TraesCS3B01G262700 chr3B 86.319 709 64 18 703 1402 50959673 50958989 0.000000e+00 741.0
2 TraesCS3B01G262700 chr3B 81.151 695 92 26 384 1046 50942477 50943164 3.050000e-144 521.0
3 TraesCS3B01G262700 chr3B 88.424 311 21 7 1103 1402 50943174 50943480 7.030000e-96 361.0
4 TraesCS3B01G262700 chr3B 87.013 308 28 6 1103 1402 50654381 50654078 1.180000e-88 337.0
5 TraesCS3B01G262700 chr3B 74.902 510 67 38 1833 2294 50943688 50944184 2.730000e-40 176.0
6 TraesCS3B01G262700 chr3B 75.719 313 43 22 1854 2153 50653534 50653242 2.790000e-25 126.0
7 TraesCS3B01G262700 chr3A 95.046 2301 85 17 380 2671 436274729 436272449 0.000000e+00 3591.0
8 TraesCS3B01G262700 chr3A 80.058 687 95 25 384 1046 40390702 40390034 3.110000e-129 472.0
9 TraesCS3B01G262700 chr3A 81.212 495 51 25 1932 2411 40389331 40388864 7.030000e-96 361.0
10 TraesCS3B01G262700 chr3A 87.342 316 25 8 1097 1402 40390022 40389712 5.470000e-92 348.0
11 TraesCS3B01G262700 chr3A 87.708 301 24 5 1111 1402 40556132 40555836 3.290000e-89 339.0
12 TraesCS3B01G262700 chr3D 94.608 2281 92 15 383 2655 299744492 299746749 0.000000e+00 3502.0
13 TraesCS3B01G262700 chr3D 81.958 1042 122 41 387 1402 29813105 29812104 0.000000e+00 822.0
14 TraesCS3B01G262700 chr3D 79.846 1042 99 53 384 1402 29801556 29800603 0.000000e+00 658.0
15 TraesCS3B01G262700 chr3D 78.571 350 40 25 1833 2161 29811842 29811507 5.830000e-47 198.0
16 TraesCS3B01G262700 chr3D 82.759 232 27 9 2116 2341 29852995 29852771 7.540000e-46 195.0
17 TraesCS3B01G262700 chr3D 95.455 88 2 1 1490 1575 29861192 29861105 3.590000e-29 139.0
18 TraesCS3B01G262700 chr3D 84.615 91 14 0 2321 2411 29788385 29788295 1.020000e-14 91.6
19 TraesCS3B01G262700 chr7B 83.593 707 65 28 709 1402 707946959 707946291 1.360000e-172 616.0
20 TraesCS3B01G262700 chr7B 85.166 391 48 7 1 388 692932738 692933121 2.490000e-105 392.0
21 TraesCS3B01G262700 chr7B 81.746 378 53 12 11 380 143166272 143165903 4.320000e-78 302.0
22 TraesCS3B01G262700 chr7B 78.671 286 32 16 385 647 707947581 707947302 2.130000e-36 163.0
23 TraesCS3B01G262700 chr7B 81.875 160 28 1 2498 2657 550876981 550877139 1.670000e-27 134.0
24 TraesCS3B01G262700 chr7B 76.159 302 40 25 1833 2118 707946070 707945785 2.160000e-26 130.0
25 TraesCS3B01G262700 chr6B 94.211 380 20 1 1 380 286596418 286596795 1.780000e-161 579.0
26 TraesCS3B01G262700 chr5B 97.938 291 6 0 90 380 471335565 471335855 3.070000e-139 505.0
27 TraesCS3B01G262700 chr5B 85.938 384 49 4 1 380 640143181 640143563 3.200000e-109 405.0
28 TraesCS3B01G262700 chr5B 90.968 155 10 3 234 387 535335236 535335085 3.490000e-49 206.0
29 TraesCS3B01G262700 chr2B 89.239 381 30 3 1 380 681334175 681334545 1.450000e-127 466.0
30 TraesCS3B01G262700 chr4B 87.435 382 46 2 1 380 445173671 445173290 3.160000e-119 438.0
31 TraesCS3B01G262700 chr1B 81.132 371 39 14 23 380 273666645 273666997 4.380000e-68 268.0
32 TraesCS3B01G262700 chr7D 82.464 211 32 2 2462 2671 392642232 392642026 2.110000e-41 180.0
33 TraesCS3B01G262700 chr4D 85.714 168 23 1 2498 2664 473830546 473830713 2.730000e-40 176.0
34 TraesCS3B01G262700 chr6D 86.486 74 8 2 309 380 2441408 2441335 2.200000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G262700 chr3B 421530451 421533121 2670 True 4933.000000 4933 100.000000 1 2671 1 chr3B.!!$R2 2670
1 TraesCS3B01G262700 chr3B 50958989 50959673 684 True 741.000000 741 86.319000 703 1402 1 chr3B.!!$R1 699
2 TraesCS3B01G262700 chr3B 50942477 50944184 1707 False 352.666667 521 81.492333 384 2294 3 chr3B.!!$F1 1910
3 TraesCS3B01G262700 chr3B 50653242 50654381 1139 True 231.500000 337 81.366000 1103 2153 2 chr3B.!!$R3 1050
4 TraesCS3B01G262700 chr3A 436272449 436274729 2280 True 3591.000000 3591 95.046000 380 2671 1 chr3A.!!$R2 2291
5 TraesCS3B01G262700 chr3A 40388864 40390702 1838 True 393.666667 472 82.870667 384 2411 3 chr3A.!!$R3 2027
6 TraesCS3B01G262700 chr3D 299744492 299746749 2257 False 3502.000000 3502 94.608000 383 2655 1 chr3D.!!$F1 2272
7 TraesCS3B01G262700 chr3D 29800603 29801556 953 True 658.000000 658 79.846000 384 1402 1 chr3D.!!$R2 1018
8 TraesCS3B01G262700 chr3D 29811507 29813105 1598 True 510.000000 822 80.264500 387 2161 2 chr3D.!!$R5 1774
9 TraesCS3B01G262700 chr7B 707945785 707947581 1796 True 303.000000 616 79.474333 385 2118 3 chr7B.!!$R2 1733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
353 354 0.109504 TAGCAAAAATGAACGGGCGC 60.11 50.0 0.0 0.0 0.0 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1811 2528 1.83363 TGGATAGCCTGTTGACTCCTG 59.166 52.381 0.0 0.0 34.31 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.988815 ACCTTTTTAAAAATATGTGTACATGCA 57.011 25.926 13.55 0.00 37.15 3.96
38 39 9.956797 CTTTTTAAAAATATGTGTACATGCAGC 57.043 29.630 13.55 0.00 37.15 5.25
39 40 9.703892 TTTTTAAAAATATGTGTACATGCAGCT 57.296 25.926 9.31 0.00 37.15 4.24
42 43 7.864108 AAAAATATGTGTACATGCAGCTAGA 57.136 32.000 7.73 0.00 37.15 2.43
43 44 7.488187 AAAATATGTGTACATGCAGCTAGAG 57.512 36.000 7.73 0.00 37.15 2.43
44 45 2.967599 TGTGTACATGCAGCTAGAGG 57.032 50.000 0.00 0.00 0.00 3.69
45 46 1.482182 TGTGTACATGCAGCTAGAGGG 59.518 52.381 0.00 0.00 0.00 4.30
46 47 1.757118 GTGTACATGCAGCTAGAGGGA 59.243 52.381 0.00 0.00 0.00 4.20
47 48 2.168521 GTGTACATGCAGCTAGAGGGAA 59.831 50.000 0.00 0.00 0.00 3.97
48 49 2.432146 TGTACATGCAGCTAGAGGGAAG 59.568 50.000 0.00 0.00 0.00 3.46
49 50 1.577736 ACATGCAGCTAGAGGGAAGT 58.422 50.000 0.00 0.00 0.00 3.01
50 51 1.484240 ACATGCAGCTAGAGGGAAGTC 59.516 52.381 0.00 0.00 0.00 3.01
51 52 1.483827 CATGCAGCTAGAGGGAAGTCA 59.516 52.381 0.00 0.00 0.00 3.41
52 53 1.644509 TGCAGCTAGAGGGAAGTCAA 58.355 50.000 0.00 0.00 0.00 3.18
53 54 1.977854 TGCAGCTAGAGGGAAGTCAAA 59.022 47.619 0.00 0.00 0.00 2.69
54 55 2.573462 TGCAGCTAGAGGGAAGTCAAAT 59.427 45.455 0.00 0.00 0.00 2.32
55 56 3.202097 GCAGCTAGAGGGAAGTCAAATC 58.798 50.000 0.00 0.00 0.00 2.17
56 57 3.369892 GCAGCTAGAGGGAAGTCAAATCA 60.370 47.826 0.00 0.00 0.00 2.57
57 58 4.440880 CAGCTAGAGGGAAGTCAAATCAG 58.559 47.826 0.00 0.00 0.00 2.90
58 59 3.454082 AGCTAGAGGGAAGTCAAATCAGG 59.546 47.826 0.00 0.00 0.00 3.86
59 60 3.198853 GCTAGAGGGAAGTCAAATCAGGT 59.801 47.826 0.00 0.00 0.00 4.00
60 61 4.323868 GCTAGAGGGAAGTCAAATCAGGTT 60.324 45.833 0.00 0.00 0.00 3.50
61 62 4.026356 AGAGGGAAGTCAAATCAGGTTG 57.974 45.455 0.00 0.00 0.00 3.77
62 63 3.395941 AGAGGGAAGTCAAATCAGGTTGT 59.604 43.478 0.00 0.00 0.00 3.32
63 64 3.753797 GAGGGAAGTCAAATCAGGTTGTC 59.246 47.826 0.00 0.00 0.00 3.18
64 65 3.138283 AGGGAAGTCAAATCAGGTTGTCA 59.862 43.478 0.00 0.00 0.00 3.58
65 66 3.253432 GGGAAGTCAAATCAGGTTGTCAC 59.747 47.826 0.00 0.00 0.00 3.67
66 67 3.882888 GGAAGTCAAATCAGGTTGTCACA 59.117 43.478 0.00 0.00 0.00 3.58
67 68 4.520492 GGAAGTCAAATCAGGTTGTCACAT 59.480 41.667 0.00 0.00 0.00 3.21
68 69 5.443185 AAGTCAAATCAGGTTGTCACATG 57.557 39.130 0.00 0.00 35.94 3.21
69 70 4.464008 AGTCAAATCAGGTTGTCACATGT 58.536 39.130 0.00 0.00 36.07 3.21
70 71 4.889409 AGTCAAATCAGGTTGTCACATGTT 59.111 37.500 0.00 0.00 36.07 2.71
71 72 5.360714 AGTCAAATCAGGTTGTCACATGTTT 59.639 36.000 0.00 0.00 36.07 2.83
72 73 5.459762 GTCAAATCAGGTTGTCACATGTTTG 59.540 40.000 0.00 0.00 37.22 2.93
73 74 5.126869 TCAAATCAGGTTGTCACATGTTTGT 59.873 36.000 0.00 0.00 37.20 2.83
74 75 4.836125 ATCAGGTTGTCACATGTTTGTC 57.164 40.909 0.00 0.00 36.07 3.18
75 76 2.948979 TCAGGTTGTCACATGTTTGTCC 59.051 45.455 0.00 0.00 36.07 4.02
76 77 2.687425 CAGGTTGTCACATGTTTGTCCA 59.313 45.455 0.00 0.00 32.34 4.02
77 78 3.130164 CAGGTTGTCACATGTTTGTCCAA 59.870 43.478 0.00 0.00 32.34 3.53
78 79 3.130340 AGGTTGTCACATGTTTGTCCAAC 59.870 43.478 0.00 5.10 40.59 3.77
79 80 3.105203 GTTGTCACATGTTTGTCCAACG 58.895 45.455 0.00 0.00 38.36 4.10
80 81 2.633488 TGTCACATGTTTGTCCAACGA 58.367 42.857 0.00 0.00 38.36 3.85
81 82 3.010420 TGTCACATGTTTGTCCAACGAA 58.990 40.909 0.00 0.00 38.36 3.85
82 83 3.440522 TGTCACATGTTTGTCCAACGAAA 59.559 39.130 0.00 0.00 38.36 3.46
83 84 4.097135 TGTCACATGTTTGTCCAACGAAAT 59.903 37.500 0.00 0.00 38.36 2.17
84 85 4.675114 GTCACATGTTTGTCCAACGAAATC 59.325 41.667 0.00 0.00 38.36 2.17
85 86 4.578516 TCACATGTTTGTCCAACGAAATCT 59.421 37.500 0.00 0.00 38.36 2.40
86 87 5.760743 TCACATGTTTGTCCAACGAAATCTA 59.239 36.000 0.00 0.00 38.36 1.98
87 88 5.851177 CACATGTTTGTCCAACGAAATCTAC 59.149 40.000 0.00 0.00 38.36 2.59
88 89 5.529430 ACATGTTTGTCCAACGAAATCTACA 59.471 36.000 0.00 0.00 38.36 2.74
89 90 5.412526 TGTTTGTCCAACGAAATCTACAC 57.587 39.130 0.00 0.00 38.36 2.90
90 91 4.876679 TGTTTGTCCAACGAAATCTACACA 59.123 37.500 0.00 0.00 38.36 3.72
91 92 5.529430 TGTTTGTCCAACGAAATCTACACAT 59.471 36.000 0.00 0.00 38.36 3.21
92 93 5.605564 TTGTCCAACGAAATCTACACATG 57.394 39.130 0.00 0.00 0.00 3.21
93 94 3.435327 TGTCCAACGAAATCTACACATGC 59.565 43.478 0.00 0.00 0.00 4.06
94 95 3.435327 GTCCAACGAAATCTACACATGCA 59.565 43.478 0.00 0.00 0.00 3.96
95 96 4.068599 TCCAACGAAATCTACACATGCAA 58.931 39.130 0.00 0.00 0.00 4.08
96 97 4.517075 TCCAACGAAATCTACACATGCAAA 59.483 37.500 0.00 0.00 0.00 3.68
97 98 4.853196 CCAACGAAATCTACACATGCAAAG 59.147 41.667 0.00 0.00 0.00 2.77
98 99 5.451908 CAACGAAATCTACACATGCAAAGT 58.548 37.500 0.00 0.00 0.00 2.66
99 100 5.689383 ACGAAATCTACACATGCAAAGTT 57.311 34.783 0.00 0.00 0.00 2.66
100 101 5.689819 ACGAAATCTACACATGCAAAGTTC 58.310 37.500 0.00 0.00 0.00 3.01
101 102 5.238432 ACGAAATCTACACATGCAAAGTTCA 59.762 36.000 0.00 0.00 0.00 3.18
102 103 5.791974 CGAAATCTACACATGCAAAGTTCAG 59.208 40.000 0.00 0.00 0.00 3.02
103 104 5.633830 AATCTACACATGCAAAGTTCAGG 57.366 39.130 0.00 0.00 0.00 3.86
104 105 4.350368 TCTACACATGCAAAGTTCAGGA 57.650 40.909 0.00 0.00 0.00 3.86
105 106 4.910195 TCTACACATGCAAAGTTCAGGAT 58.090 39.130 0.00 0.00 0.00 3.24
106 107 6.048732 TCTACACATGCAAAGTTCAGGATA 57.951 37.500 0.00 0.00 0.00 2.59
107 108 6.472016 TCTACACATGCAAAGTTCAGGATAA 58.528 36.000 0.00 0.00 0.00 1.75
108 109 5.633830 ACACATGCAAAGTTCAGGATAAG 57.366 39.130 0.00 0.00 0.00 1.73
109 110 5.316167 ACACATGCAAAGTTCAGGATAAGA 58.684 37.500 0.00 0.00 0.00 2.10
110 111 5.948162 ACACATGCAAAGTTCAGGATAAGAT 59.052 36.000 0.00 0.00 0.00 2.40
111 112 6.127814 ACACATGCAAAGTTCAGGATAAGATG 60.128 38.462 0.00 0.00 0.00 2.90
112 113 6.094464 CACATGCAAAGTTCAGGATAAGATGA 59.906 38.462 0.00 0.00 0.00 2.92
113 114 6.094603 ACATGCAAAGTTCAGGATAAGATGAC 59.905 38.462 0.00 0.00 0.00 3.06
114 115 5.559770 TGCAAAGTTCAGGATAAGATGACA 58.440 37.500 0.00 0.00 0.00 3.58
115 116 6.003326 TGCAAAGTTCAGGATAAGATGACAA 58.997 36.000 0.00 0.00 0.00 3.18
116 117 6.072508 TGCAAAGTTCAGGATAAGATGACAAC 60.073 38.462 0.00 0.00 0.00 3.32
117 118 6.537566 CAAAGTTCAGGATAAGATGACAACG 58.462 40.000 0.00 0.00 0.00 4.10
118 119 5.661056 AGTTCAGGATAAGATGACAACGA 57.339 39.130 0.00 0.00 0.00 3.85
119 120 5.655488 AGTTCAGGATAAGATGACAACGAG 58.345 41.667 0.00 0.00 0.00 4.18
120 121 5.186021 AGTTCAGGATAAGATGACAACGAGT 59.814 40.000 0.00 0.00 0.00 4.18
121 122 6.377429 AGTTCAGGATAAGATGACAACGAGTA 59.623 38.462 0.00 0.00 0.00 2.59
122 123 6.378710 TCAGGATAAGATGACAACGAGTAG 57.621 41.667 0.00 0.00 0.00 2.57
123 124 5.299531 TCAGGATAAGATGACAACGAGTAGG 59.700 44.000 0.00 0.00 0.00 3.18
124 125 5.067936 CAGGATAAGATGACAACGAGTAGGT 59.932 44.000 0.00 0.00 0.00 3.08
125 126 5.299782 AGGATAAGATGACAACGAGTAGGTC 59.700 44.000 0.00 0.00 0.00 3.85
126 127 5.067413 GGATAAGATGACAACGAGTAGGTCA 59.933 44.000 11.31 11.31 44.73 4.02
127 128 3.851976 AGATGACAACGAGTAGGTCAC 57.148 47.619 11.19 7.26 43.58 3.67
128 129 3.154710 AGATGACAACGAGTAGGTCACA 58.845 45.455 11.19 0.00 43.58 3.58
129 130 2.787601 TGACAACGAGTAGGTCACAC 57.212 50.000 6.57 0.00 36.69 3.82
130 131 2.304092 TGACAACGAGTAGGTCACACT 58.696 47.619 6.57 0.00 36.69 3.55
131 132 2.691526 TGACAACGAGTAGGTCACACTT 59.308 45.455 6.57 0.00 36.69 3.16
132 133 3.050619 GACAACGAGTAGGTCACACTTG 58.949 50.000 0.00 0.00 34.16 3.16
133 134 2.691526 ACAACGAGTAGGTCACACTTGA 59.308 45.455 0.00 0.00 32.59 3.02
134 135 3.131577 ACAACGAGTAGGTCACACTTGAA 59.868 43.478 0.00 0.00 31.90 2.69
135 136 4.116961 CAACGAGTAGGTCACACTTGAAA 58.883 43.478 0.00 0.00 31.90 2.69
136 137 4.395959 ACGAGTAGGTCACACTTGAAAA 57.604 40.909 0.00 0.00 31.90 2.29
137 138 4.957296 ACGAGTAGGTCACACTTGAAAAT 58.043 39.130 0.00 0.00 31.90 1.82
138 139 4.750098 ACGAGTAGGTCACACTTGAAAATG 59.250 41.667 0.00 0.00 31.90 2.32
139 140 4.988540 CGAGTAGGTCACACTTGAAAATGA 59.011 41.667 0.00 0.00 31.90 2.57
140 141 5.639506 CGAGTAGGTCACACTTGAAAATGAT 59.360 40.000 0.00 0.00 31.90 2.45
141 142 6.401474 CGAGTAGGTCACACTTGAAAATGATG 60.401 42.308 0.00 0.00 31.90 3.07
142 143 5.707298 AGTAGGTCACACTTGAAAATGATGG 59.293 40.000 0.00 0.00 31.90 3.51
143 144 4.473444 AGGTCACACTTGAAAATGATGGT 58.527 39.130 0.00 0.00 31.90 3.55
144 145 4.279169 AGGTCACACTTGAAAATGATGGTG 59.721 41.667 0.00 0.00 31.90 4.17
145 146 4.278170 GGTCACACTTGAAAATGATGGTGA 59.722 41.667 0.00 0.00 31.90 4.02
146 147 5.221224 GGTCACACTTGAAAATGATGGTGAA 60.221 40.000 0.00 0.00 35.99 3.18
147 148 5.916883 GTCACACTTGAAAATGATGGTGAAG 59.083 40.000 0.00 0.00 35.99 3.02
148 149 5.009911 TCACACTTGAAAATGATGGTGAAGG 59.990 40.000 0.00 0.00 31.75 3.46
149 150 5.009911 CACACTTGAAAATGATGGTGAAGGA 59.990 40.000 0.00 0.00 0.00 3.36
150 151 5.010012 ACACTTGAAAATGATGGTGAAGGAC 59.990 40.000 0.00 0.00 0.00 3.85
151 152 5.242393 CACTTGAAAATGATGGTGAAGGACT 59.758 40.000 0.00 0.00 0.00 3.85
152 153 5.835280 ACTTGAAAATGATGGTGAAGGACTT 59.165 36.000 0.00 0.00 0.00 3.01
153 154 6.324770 ACTTGAAAATGATGGTGAAGGACTTT 59.675 34.615 0.00 0.00 0.00 2.66
154 155 6.729690 TGAAAATGATGGTGAAGGACTTTT 57.270 33.333 0.00 0.00 0.00 2.27
155 156 7.831691 TGAAAATGATGGTGAAGGACTTTTA 57.168 32.000 0.00 0.00 0.00 1.52
156 157 7.657336 TGAAAATGATGGTGAAGGACTTTTAC 58.343 34.615 0.00 0.00 0.00 2.01
157 158 7.286546 TGAAAATGATGGTGAAGGACTTTTACA 59.713 33.333 0.00 0.00 0.00 2.41
158 159 6.824305 AATGATGGTGAAGGACTTTTACAG 57.176 37.500 0.00 0.00 0.00 2.74
159 160 5.560722 TGATGGTGAAGGACTTTTACAGA 57.439 39.130 0.00 0.00 0.00 3.41
160 161 6.126863 TGATGGTGAAGGACTTTTACAGAT 57.873 37.500 0.00 0.00 0.00 2.90
161 162 6.173339 TGATGGTGAAGGACTTTTACAGATC 58.827 40.000 0.00 0.00 0.00 2.75
162 163 5.560722 TGGTGAAGGACTTTTACAGATCA 57.439 39.130 0.00 0.00 0.00 2.92
163 164 6.126863 TGGTGAAGGACTTTTACAGATCAT 57.873 37.500 0.00 0.00 0.00 2.45
164 165 6.542821 TGGTGAAGGACTTTTACAGATCATT 58.457 36.000 0.00 0.00 0.00 2.57
165 166 7.004086 TGGTGAAGGACTTTTACAGATCATTT 58.996 34.615 0.00 0.00 0.00 2.32
166 167 7.040478 TGGTGAAGGACTTTTACAGATCATTTG 60.040 37.037 0.00 0.00 0.00 2.32
167 168 7.040409 GGTGAAGGACTTTTACAGATCATTTGT 60.040 37.037 0.00 0.00 0.00 2.83
168 169 8.017946 GTGAAGGACTTTTACAGATCATTTGTC 58.982 37.037 0.00 0.00 0.00 3.18
169 170 7.174946 TGAAGGACTTTTACAGATCATTTGTCC 59.825 37.037 0.00 0.00 41.00 4.02
170 171 6.542821 AGGACTTTTACAGATCATTTGTCCA 58.457 36.000 15.93 0.00 42.54 4.02
171 172 7.177878 AGGACTTTTACAGATCATTTGTCCAT 58.822 34.615 15.93 4.84 42.54 3.41
172 173 7.671398 AGGACTTTTACAGATCATTTGTCCATT 59.329 33.333 15.93 1.33 42.54 3.16
173 174 7.756722 GGACTTTTACAGATCATTTGTCCATTG 59.243 37.037 0.00 0.00 40.56 2.82
174 175 8.408043 ACTTTTACAGATCATTTGTCCATTGA 57.592 30.769 0.00 0.00 0.00 2.57
175 176 8.299570 ACTTTTACAGATCATTTGTCCATTGAC 58.700 33.333 0.00 0.00 42.12 3.18
176 177 8.408043 TTTTACAGATCATTTGTCCATTGACT 57.592 30.769 0.00 0.00 42.28 3.41
177 178 5.892160 ACAGATCATTTGTCCATTGACTG 57.108 39.130 0.00 0.00 42.28 3.51
178 179 5.319453 ACAGATCATTTGTCCATTGACTGT 58.681 37.500 0.00 0.00 42.28 3.55
179 180 5.413833 ACAGATCATTTGTCCATTGACTGTC 59.586 40.000 0.00 0.00 42.28 3.51
180 181 4.946157 AGATCATTTGTCCATTGACTGTCC 59.054 41.667 5.17 0.00 42.28 4.02
181 182 4.097551 TCATTTGTCCATTGACTGTCCA 57.902 40.909 5.17 0.00 42.28 4.02
182 183 4.665451 TCATTTGTCCATTGACTGTCCAT 58.335 39.130 5.17 0.00 42.28 3.41
183 184 5.814481 TCATTTGTCCATTGACTGTCCATA 58.186 37.500 5.17 0.00 42.28 2.74
184 185 6.244654 TCATTTGTCCATTGACTGTCCATAA 58.755 36.000 5.17 0.00 42.28 1.90
185 186 6.375174 TCATTTGTCCATTGACTGTCCATAAG 59.625 38.462 5.17 0.00 42.28 1.73
186 187 5.497464 TTGTCCATTGACTGTCCATAAGA 57.503 39.130 5.17 0.00 42.28 2.10
187 188 4.832248 TGTCCATTGACTGTCCATAAGAC 58.168 43.478 5.17 10.35 42.28 3.01
188 189 4.532126 TGTCCATTGACTGTCCATAAGACT 59.468 41.667 17.53 0.00 41.65 3.24
189 190 5.013079 TGTCCATTGACTGTCCATAAGACTT 59.987 40.000 17.53 0.00 41.65 3.01
190 191 5.352569 GTCCATTGACTGTCCATAAGACTTG 59.647 44.000 5.17 0.00 46.46 3.16
191 192 5.248248 TCCATTGACTGTCCATAAGACTTGA 59.752 40.000 5.17 0.00 46.46 3.02
192 193 5.939883 CCATTGACTGTCCATAAGACTTGAA 59.060 40.000 5.17 0.00 46.46 2.69
193 194 6.128172 CCATTGACTGTCCATAAGACTTGAAC 60.128 42.308 5.17 0.00 46.46 3.18
194 195 4.894784 TGACTGTCCATAAGACTTGAACC 58.105 43.478 5.17 0.00 46.46 3.62
195 196 4.346709 TGACTGTCCATAAGACTTGAACCA 59.653 41.667 5.17 0.00 46.46 3.67
196 197 5.163248 TGACTGTCCATAAGACTTGAACCAA 60.163 40.000 5.17 0.00 46.46 3.67
197 198 5.063880 ACTGTCCATAAGACTTGAACCAAC 58.936 41.667 0.00 0.00 46.46 3.77
198 199 5.163195 ACTGTCCATAAGACTTGAACCAACT 60.163 40.000 0.00 0.00 46.46 3.16
199 200 5.690865 TGTCCATAAGACTTGAACCAACTT 58.309 37.500 0.00 0.00 46.46 2.66
200 201 5.763204 TGTCCATAAGACTTGAACCAACTTC 59.237 40.000 0.00 0.00 46.46 3.01
201 202 5.763204 GTCCATAAGACTTGAACCAACTTCA 59.237 40.000 0.00 0.00 42.69 3.02
202 203 5.763204 TCCATAAGACTTGAACCAACTTCAC 59.237 40.000 0.00 0.00 38.70 3.18
203 204 5.530915 CCATAAGACTTGAACCAACTTCACA 59.469 40.000 0.00 0.00 38.70 3.58
204 205 6.039270 CCATAAGACTTGAACCAACTTCACAA 59.961 38.462 0.00 0.00 38.70 3.33
205 206 7.255590 CCATAAGACTTGAACCAACTTCACAAT 60.256 37.037 0.00 0.00 38.70 2.71
206 207 8.783093 CATAAGACTTGAACCAACTTCACAATA 58.217 33.333 0.00 0.00 38.70 1.90
207 208 6.619801 AGACTTGAACCAACTTCACAATAC 57.380 37.500 0.00 0.00 38.70 1.89
208 209 6.119536 AGACTTGAACCAACTTCACAATACA 58.880 36.000 0.00 0.00 38.70 2.29
209 210 6.772716 AGACTTGAACCAACTTCACAATACAT 59.227 34.615 0.00 0.00 38.70 2.29
210 211 7.936847 AGACTTGAACCAACTTCACAATACATA 59.063 33.333 0.00 0.00 38.70 2.29
211 212 8.099364 ACTTGAACCAACTTCACAATACATAG 57.901 34.615 0.00 0.00 38.70 2.23
212 213 7.719633 ACTTGAACCAACTTCACAATACATAGT 59.280 33.333 0.00 0.00 38.70 2.12
213 214 8.458573 TTGAACCAACTTCACAATACATAGTT 57.541 30.769 0.00 0.00 38.70 2.24
214 215 8.094798 TGAACCAACTTCACAATACATAGTTC 57.905 34.615 0.00 0.00 33.65 3.01
215 216 7.717436 TGAACCAACTTCACAATACATAGTTCA 59.283 33.333 0.00 0.00 37.10 3.18
216 217 7.672983 ACCAACTTCACAATACATAGTTCAG 57.327 36.000 0.00 0.00 0.00 3.02
217 218 7.224297 ACCAACTTCACAATACATAGTTCAGT 58.776 34.615 0.00 0.00 0.00 3.41
218 219 7.719633 ACCAACTTCACAATACATAGTTCAGTT 59.280 33.333 0.00 0.00 0.00 3.16
219 220 8.230486 CCAACTTCACAATACATAGTTCAGTTC 58.770 37.037 0.00 0.00 0.00 3.01
220 221 8.773645 CAACTTCACAATACATAGTTCAGTTCA 58.226 33.333 0.00 0.00 0.00 3.18
221 222 8.311650 ACTTCACAATACATAGTTCAGTTCAC 57.688 34.615 0.00 0.00 0.00 3.18
222 223 7.931407 ACTTCACAATACATAGTTCAGTTCACA 59.069 33.333 0.00 0.00 0.00 3.58
223 224 7.652300 TCACAATACATAGTTCAGTTCACAC 57.348 36.000 0.00 0.00 0.00 3.82
224 225 6.649141 TCACAATACATAGTTCAGTTCACACC 59.351 38.462 0.00 0.00 0.00 4.16
225 226 6.426633 CACAATACATAGTTCAGTTCACACCA 59.573 38.462 0.00 0.00 0.00 4.17
226 227 6.995686 ACAATACATAGTTCAGTTCACACCAA 59.004 34.615 0.00 0.00 0.00 3.67
227 228 7.500892 ACAATACATAGTTCAGTTCACACCAAA 59.499 33.333 0.00 0.00 0.00 3.28
228 229 8.514594 CAATACATAGTTCAGTTCACACCAAAT 58.485 33.333 0.00 0.00 0.00 2.32
229 230 6.959639 ACATAGTTCAGTTCACACCAAATT 57.040 33.333 0.00 0.00 0.00 1.82
230 231 6.738114 ACATAGTTCAGTTCACACCAAATTG 58.262 36.000 0.00 0.00 0.00 2.32
231 232 4.045636 AGTTCAGTTCACACCAAATTGC 57.954 40.909 0.00 0.00 0.00 3.56
232 233 3.446873 AGTTCAGTTCACACCAAATTGCA 59.553 39.130 0.00 0.00 0.00 4.08
233 234 4.081752 AGTTCAGTTCACACCAAATTGCAA 60.082 37.500 0.00 0.00 0.00 4.08
234 235 4.462508 TCAGTTCACACCAAATTGCAAA 57.537 36.364 1.71 0.00 0.00 3.68
235 236 5.021033 TCAGTTCACACCAAATTGCAAAT 57.979 34.783 1.71 0.00 0.00 2.32
236 237 5.049167 TCAGTTCACACCAAATTGCAAATC 58.951 37.500 1.71 0.00 0.00 2.17
237 238 5.051816 CAGTTCACACCAAATTGCAAATCT 58.948 37.500 1.71 0.00 0.00 2.40
238 239 6.040278 TCAGTTCACACCAAATTGCAAATCTA 59.960 34.615 1.71 0.00 0.00 1.98
239 240 6.700960 CAGTTCACACCAAATTGCAAATCTAA 59.299 34.615 1.71 0.00 0.00 2.10
240 241 6.701400 AGTTCACACCAAATTGCAAATCTAAC 59.299 34.615 1.71 0.00 0.00 2.34
241 242 6.403866 TCACACCAAATTGCAAATCTAACT 57.596 33.333 1.71 0.00 0.00 2.24
242 243 6.815089 TCACACCAAATTGCAAATCTAACTT 58.185 32.000 1.71 0.00 0.00 2.66
243 244 6.922957 TCACACCAAATTGCAAATCTAACTTC 59.077 34.615 1.71 0.00 0.00 3.01
244 245 6.146021 CACACCAAATTGCAAATCTAACTTCC 59.854 38.462 1.71 0.00 0.00 3.46
245 246 6.183360 ACACCAAATTGCAAATCTAACTTCCA 60.183 34.615 1.71 0.00 0.00 3.53
246 247 6.875195 CACCAAATTGCAAATCTAACTTCCAT 59.125 34.615 1.71 0.00 0.00 3.41
247 248 6.875195 ACCAAATTGCAAATCTAACTTCCATG 59.125 34.615 1.71 0.00 0.00 3.66
248 249 6.183360 CCAAATTGCAAATCTAACTTCCATGC 60.183 38.462 1.71 0.00 0.00 4.06
249 250 5.927281 ATTGCAAATCTAACTTCCATGCT 57.073 34.783 1.71 0.00 33.66 3.79
250 251 5.726980 TTGCAAATCTAACTTCCATGCTT 57.273 34.783 0.00 0.00 33.66 3.91
251 252 5.314923 TGCAAATCTAACTTCCATGCTTC 57.685 39.130 0.00 0.00 33.66 3.86
252 253 4.766373 TGCAAATCTAACTTCCATGCTTCA 59.234 37.500 0.00 0.00 33.66 3.02
253 254 5.419788 TGCAAATCTAACTTCCATGCTTCAT 59.580 36.000 0.00 0.00 33.66 2.57
254 255 6.071221 TGCAAATCTAACTTCCATGCTTCATT 60.071 34.615 0.00 0.00 33.66 2.57
255 256 6.815142 GCAAATCTAACTTCCATGCTTCATTT 59.185 34.615 0.00 0.00 0.00 2.32
256 257 7.009907 GCAAATCTAACTTCCATGCTTCATTTC 59.990 37.037 0.00 0.00 0.00 2.17
257 258 7.951347 AATCTAACTTCCATGCTTCATTTCT 57.049 32.000 0.00 0.00 0.00 2.52
258 259 6.992063 TCTAACTTCCATGCTTCATTTCTC 57.008 37.500 0.00 0.00 0.00 2.87
259 260 6.475504 TCTAACTTCCATGCTTCATTTCTCA 58.524 36.000 0.00 0.00 0.00 3.27
260 261 6.942005 TCTAACTTCCATGCTTCATTTCTCAA 59.058 34.615 0.00 0.00 0.00 3.02
261 262 5.382618 ACTTCCATGCTTCATTTCTCAAC 57.617 39.130 0.00 0.00 0.00 3.18
262 263 4.828939 ACTTCCATGCTTCATTTCTCAACA 59.171 37.500 0.00 0.00 0.00 3.33
263 264 5.479375 ACTTCCATGCTTCATTTCTCAACAT 59.521 36.000 0.00 0.00 0.00 2.71
264 265 6.660521 ACTTCCATGCTTCATTTCTCAACATA 59.339 34.615 0.00 0.00 0.00 2.29
265 266 7.341256 ACTTCCATGCTTCATTTCTCAACATAT 59.659 33.333 0.00 0.00 0.00 1.78
266 267 7.649533 TCCATGCTTCATTTCTCAACATATT 57.350 32.000 0.00 0.00 0.00 1.28
267 268 8.070034 TCCATGCTTCATTTCTCAACATATTT 57.930 30.769 0.00 0.00 0.00 1.40
268 269 9.187996 TCCATGCTTCATTTCTCAACATATTTA 57.812 29.630 0.00 0.00 0.00 1.40
269 270 9.976511 CCATGCTTCATTTCTCAACATATTTAT 57.023 29.630 0.00 0.00 0.00 1.40
296 297 9.125026 ACAAATCCTATATGACTTCCATGTTTC 57.875 33.333 0.00 0.00 36.71 2.78
297 298 9.123902 CAAATCCTATATGACTTCCATGTTTCA 57.876 33.333 0.00 0.00 36.71 2.69
298 299 9.872684 AAATCCTATATGACTTCCATGTTTCAT 57.127 29.630 0.00 0.00 36.71 2.57
299 300 8.859236 ATCCTATATGACTTCCATGTTTCATG 57.141 34.615 3.11 3.11 36.71 3.07
300 301 7.805163 TCCTATATGACTTCCATGTTTCATGT 58.195 34.615 8.57 0.00 36.71 3.21
301 302 7.933577 TCCTATATGACTTCCATGTTTCATGTC 59.066 37.037 8.57 0.00 36.71 3.06
302 303 7.935755 CCTATATGACTTCCATGTTTCATGTCT 59.064 37.037 8.57 0.00 36.71 3.41
303 304 9.334947 CTATATGACTTCCATGTTTCATGTCTT 57.665 33.333 8.57 0.00 36.71 3.01
304 305 6.906157 ATGACTTCCATGTTTCATGTCTTT 57.094 33.333 8.57 0.00 33.39 2.52
305 306 6.075762 TGACTTCCATGTTTCATGTCTTTG 57.924 37.500 8.57 0.00 0.00 2.77
306 307 5.593909 TGACTTCCATGTTTCATGTCTTTGT 59.406 36.000 8.57 1.67 0.00 2.83
307 308 6.770303 TGACTTCCATGTTTCATGTCTTTGTA 59.230 34.615 8.57 0.00 0.00 2.41
308 309 7.448161 TGACTTCCATGTTTCATGTCTTTGTAT 59.552 33.333 8.57 0.00 0.00 2.29
309 310 8.862325 ACTTCCATGTTTCATGTCTTTGTATA 57.138 30.769 8.57 0.00 0.00 1.47
310 311 8.730680 ACTTCCATGTTTCATGTCTTTGTATAC 58.269 33.333 8.57 0.00 0.00 1.47
311 312 8.862325 TTCCATGTTTCATGTCTTTGTATACT 57.138 30.769 4.17 0.00 0.00 2.12
312 313 8.862325 TCCATGTTTCATGTCTTTGTATACTT 57.138 30.769 4.17 0.00 0.00 2.24
313 314 8.729756 TCCATGTTTCATGTCTTTGTATACTTG 58.270 33.333 4.17 0.00 0.00 3.16
314 315 8.514594 CCATGTTTCATGTCTTTGTATACTTGT 58.485 33.333 4.17 0.00 0.00 3.16
315 316 9.546909 CATGTTTCATGTCTTTGTATACTTGTC 57.453 33.333 4.17 0.00 0.00 3.18
316 317 8.669946 TGTTTCATGTCTTTGTATACTTGTCA 57.330 30.769 4.17 0.00 0.00 3.58
317 318 9.114952 TGTTTCATGTCTTTGTATACTTGTCAA 57.885 29.630 4.17 0.00 0.00 3.18
318 319 9.944663 GTTTCATGTCTTTGTATACTTGTCAAA 57.055 29.630 4.17 0.00 0.00 2.69
322 323 9.559958 CATGTCTTTGTATACTTGTCAAAATCC 57.440 33.333 4.17 0.00 32.06 3.01
323 324 8.106247 TGTCTTTGTATACTTGTCAAAATCCC 57.894 34.615 4.17 0.00 32.06 3.85
324 325 7.942341 TGTCTTTGTATACTTGTCAAAATCCCT 59.058 33.333 4.17 0.00 32.06 4.20
325 326 9.444600 GTCTTTGTATACTTGTCAAAATCCCTA 57.555 33.333 4.17 0.00 32.06 3.53
326 327 9.444600 TCTTTGTATACTTGTCAAAATCCCTAC 57.555 33.333 4.17 0.00 32.06 3.18
327 328 8.570068 TTTGTATACTTGTCAAAATCCCTACC 57.430 34.615 4.17 0.00 0.00 3.18
328 329 7.260387 TGTATACTTGTCAAAATCCCTACCA 57.740 36.000 4.17 0.00 0.00 3.25
329 330 7.867921 TGTATACTTGTCAAAATCCCTACCAT 58.132 34.615 4.17 0.00 0.00 3.55
330 331 8.333235 TGTATACTTGTCAAAATCCCTACCATT 58.667 33.333 4.17 0.00 0.00 3.16
331 332 9.185680 GTATACTTGTCAAAATCCCTACCATTT 57.814 33.333 0.00 0.00 0.00 2.32
332 333 6.994421 ACTTGTCAAAATCCCTACCATTTT 57.006 33.333 0.00 0.00 34.42 1.82
333 334 9.762381 ATACTTGTCAAAATCCCTACCATTTTA 57.238 29.630 0.00 0.00 32.74 1.52
334 335 8.664669 ACTTGTCAAAATCCCTACCATTTTAT 57.335 30.769 0.00 0.00 32.74 1.40
335 336 9.762381 ACTTGTCAAAATCCCTACCATTTTATA 57.238 29.630 0.00 0.00 32.74 0.98
337 338 8.232913 TGTCAAAATCCCTACCATTTTATAGC 57.767 34.615 0.00 0.00 32.74 2.97
338 339 7.836685 TGTCAAAATCCCTACCATTTTATAGCA 59.163 33.333 0.00 0.00 32.74 3.49
339 340 8.691797 GTCAAAATCCCTACCATTTTATAGCAA 58.308 33.333 0.00 0.00 32.74 3.91
340 341 9.261035 TCAAAATCCCTACCATTTTATAGCAAA 57.739 29.630 0.00 0.00 32.74 3.68
341 342 9.883142 CAAAATCCCTACCATTTTATAGCAAAA 57.117 29.630 0.00 0.00 32.74 2.44
351 352 6.902224 ATTTTATAGCAAAAATGAACGGGC 57.098 33.333 4.28 0.00 37.60 6.13
352 353 2.559998 ATAGCAAAAATGAACGGGCG 57.440 45.000 0.00 0.00 0.00 6.13
353 354 0.109504 TAGCAAAAATGAACGGGCGC 60.110 50.000 0.00 0.00 0.00 6.53
354 355 1.663074 GCAAAAATGAACGGGCGCA 60.663 52.632 10.83 0.00 0.00 6.09
355 356 1.616872 GCAAAAATGAACGGGCGCAG 61.617 55.000 10.83 4.90 0.00 5.18
377 378 2.354656 GCGCGCCGTCATGATCTA 60.355 61.111 23.24 0.00 0.00 1.98
378 379 2.368105 GCGCGCCGTCATGATCTAG 61.368 63.158 23.24 0.00 0.00 2.43
505 518 2.036764 GAGGCGGCGCAGATTAACAC 62.037 60.000 34.36 12.67 0.00 3.32
538 559 2.105960 AAGAAGCAGACGCAACGCAC 62.106 55.000 0.00 0.00 42.27 5.34
618 655 4.384056 AGATGCCATTGATAAAGACTCCG 58.616 43.478 0.00 0.00 0.00 4.63
658 1007 1.454276 GTGTCGACGATGCTTTTTCGA 59.546 47.619 11.62 4.66 39.81 3.71
669 1020 1.071605 CTTTTTCGACCTCTCGCTGG 58.928 55.000 0.00 0.00 39.96 4.85
683 1034 3.636231 CTGGCCGGTGGTCCTGAA 61.636 66.667 2.29 0.00 0.00 3.02
684 1035 3.612247 CTGGCCGGTGGTCCTGAAG 62.612 68.421 2.29 0.00 0.00 3.02
685 1036 3.319198 GGCCGGTGGTCCTGAAGA 61.319 66.667 1.90 0.00 0.00 2.87
1009 1365 4.202000 CGGCTATACTCTGCAGATATCAGG 60.202 50.000 18.63 6.87 32.63 3.86
1051 1424 2.538141 CCACCACCACCACCCATCT 61.538 63.158 0.00 0.00 0.00 2.90
1062 1435 1.620589 ACCCATCTGCCCCATCACT 60.621 57.895 0.00 0.00 0.00 3.41
1065 1438 0.109342 CCATCTGCCCCATCACTACC 59.891 60.000 0.00 0.00 0.00 3.18
1066 1439 1.135094 CATCTGCCCCATCACTACCT 58.865 55.000 0.00 0.00 0.00 3.08
1068 1441 0.339859 TCTGCCCCATCACTACCTCT 59.660 55.000 0.00 0.00 0.00 3.69
1069 1442 0.755686 CTGCCCCATCACTACCTCTC 59.244 60.000 0.00 0.00 0.00 3.20
1070 1443 0.042581 TGCCCCATCACTACCTCTCA 59.957 55.000 0.00 0.00 0.00 3.27
1071 1444 1.204146 GCCCCATCACTACCTCTCAA 58.796 55.000 0.00 0.00 0.00 3.02
1072 1445 1.771255 GCCCCATCACTACCTCTCAAT 59.229 52.381 0.00 0.00 0.00 2.57
1074 1447 3.041211 CCCCATCACTACCTCTCAATCA 58.959 50.000 0.00 0.00 0.00 2.57
1075 1448 3.181461 CCCCATCACTACCTCTCAATCAC 60.181 52.174 0.00 0.00 0.00 3.06
1076 1449 3.708631 CCCATCACTACCTCTCAATCACT 59.291 47.826 0.00 0.00 0.00 3.41
1133 1513 1.569479 GCGCTCCGACTTCAAGCTTT 61.569 55.000 0.00 0.00 33.83 3.51
1143 1523 2.245096 CTTCAAGCTTTTGATTCGCCG 58.755 47.619 0.00 0.00 0.00 6.46
1192 1583 1.215647 GGCGTCGAAGGTCATGAGT 59.784 57.895 0.00 0.00 0.00 3.41
1378 1774 2.461110 CCGGCGAAACGAATCTGGG 61.461 63.158 9.30 0.00 35.47 4.45
1577 2102 0.379316 CCGCTTAATTAACCCACCGC 59.621 55.000 0.00 0.00 0.00 5.68
1702 2242 6.980978 CGGATATCTTGTTCAGTACATCACTT 59.019 38.462 2.05 0.00 36.44 3.16
1811 2528 5.229423 TCACTTGTTTAATTTGCATCTGGC 58.771 37.500 0.00 0.00 45.13 4.85
2176 2946 4.162888 TGCATATAGCTAGGCATATGCTGT 59.837 41.667 27.42 16.40 45.12 4.40
2397 3200 1.006519 TGGGTGGGATGTTTATGGGTG 59.993 52.381 0.00 0.00 0.00 4.61
2429 3232 3.431912 TGTGTGACTGCGCTTAACTTATG 59.568 43.478 9.73 0.00 0.00 1.90
2433 3236 2.866762 GACTGCGCTTAACTTATGAGGG 59.133 50.000 9.73 0.00 0.00 4.30
2533 3336 8.375506 TCTAGTGGTTCAACATTAATCTTGTCT 58.624 33.333 3.75 0.81 0.00 3.41
2606 3409 4.847512 TGATTTGAGTGTAGGTAGGGGAAA 59.152 41.667 0.00 0.00 0.00 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.988815 TGCATGTACACATATTTTTAAAAAGGT 57.011 25.926 17.72 12.73 34.26 3.50
12 13 9.956797 GCTGCATGTACACATATTTTTAAAAAG 57.043 29.630 17.72 7.94 34.26 2.27
13 14 9.703892 AGCTGCATGTACACATATTTTTAAAAA 57.296 25.926 15.38 15.38 34.26 1.94
16 17 9.389755 TCTAGCTGCATGTACACATATTTTTAA 57.610 29.630 0.00 0.00 34.26 1.52
17 18 8.956533 TCTAGCTGCATGTACACATATTTTTA 57.043 30.769 0.00 0.00 34.26 1.52
18 19 7.012704 CCTCTAGCTGCATGTACACATATTTTT 59.987 37.037 0.00 0.00 34.26 1.94
19 20 6.484643 CCTCTAGCTGCATGTACACATATTTT 59.515 38.462 0.00 0.00 34.26 1.82
20 21 5.994054 CCTCTAGCTGCATGTACACATATTT 59.006 40.000 0.00 0.00 34.26 1.40
21 22 5.512060 CCCTCTAGCTGCATGTACACATATT 60.512 44.000 0.00 0.00 34.26 1.28
22 23 4.020751 CCCTCTAGCTGCATGTACACATAT 60.021 45.833 0.00 0.00 34.26 1.78
23 24 3.321968 CCCTCTAGCTGCATGTACACATA 59.678 47.826 0.00 0.00 34.26 2.29
24 25 2.103771 CCCTCTAGCTGCATGTACACAT 59.896 50.000 0.00 0.00 36.96 3.21
25 26 1.482182 CCCTCTAGCTGCATGTACACA 59.518 52.381 0.00 0.00 0.00 3.72
26 27 1.757118 TCCCTCTAGCTGCATGTACAC 59.243 52.381 0.00 0.00 0.00 2.90
27 28 2.159179 TCCCTCTAGCTGCATGTACA 57.841 50.000 1.02 0.00 0.00 2.90
28 29 2.432510 ACTTCCCTCTAGCTGCATGTAC 59.567 50.000 1.02 0.00 0.00 2.90
29 30 2.695666 GACTTCCCTCTAGCTGCATGTA 59.304 50.000 1.02 0.00 0.00 2.29
30 31 1.484240 GACTTCCCTCTAGCTGCATGT 59.516 52.381 1.02 0.00 0.00 3.21
31 32 1.483827 TGACTTCCCTCTAGCTGCATG 59.516 52.381 1.02 0.00 0.00 4.06
32 33 1.871418 TGACTTCCCTCTAGCTGCAT 58.129 50.000 1.02 0.00 0.00 3.96
33 34 1.644509 TTGACTTCCCTCTAGCTGCA 58.355 50.000 1.02 0.00 0.00 4.41
34 35 2.770164 TTTGACTTCCCTCTAGCTGC 57.230 50.000 0.00 0.00 0.00 5.25
35 36 4.440880 CTGATTTGACTTCCCTCTAGCTG 58.559 47.826 0.00 0.00 0.00 4.24
36 37 3.454082 CCTGATTTGACTTCCCTCTAGCT 59.546 47.826 0.00 0.00 0.00 3.32
37 38 3.198853 ACCTGATTTGACTTCCCTCTAGC 59.801 47.826 0.00 0.00 0.00 3.42
38 39 5.181748 CAACCTGATTTGACTTCCCTCTAG 58.818 45.833 0.00 0.00 0.00 2.43
39 40 4.597507 ACAACCTGATTTGACTTCCCTCTA 59.402 41.667 0.00 0.00 0.00 2.43
40 41 3.395941 ACAACCTGATTTGACTTCCCTCT 59.604 43.478 0.00 0.00 0.00 3.69
41 42 3.753797 GACAACCTGATTTGACTTCCCTC 59.246 47.826 0.00 0.00 0.00 4.30
42 43 3.138283 TGACAACCTGATTTGACTTCCCT 59.862 43.478 0.00 0.00 0.00 4.20
43 44 3.253432 GTGACAACCTGATTTGACTTCCC 59.747 47.826 0.00 0.00 0.00 3.97
44 45 3.882888 TGTGACAACCTGATTTGACTTCC 59.117 43.478 0.00 0.00 0.00 3.46
45 46 5.009010 ACATGTGACAACCTGATTTGACTTC 59.991 40.000 0.00 0.00 0.00 3.01
46 47 4.889409 ACATGTGACAACCTGATTTGACTT 59.111 37.500 0.00 0.00 0.00 3.01
47 48 4.464008 ACATGTGACAACCTGATTTGACT 58.536 39.130 0.00 0.00 0.00 3.41
48 49 4.836125 ACATGTGACAACCTGATTTGAC 57.164 40.909 0.00 0.00 0.00 3.18
49 50 5.126869 ACAAACATGTGACAACCTGATTTGA 59.873 36.000 0.00 0.00 33.13 2.69
50 51 5.350633 ACAAACATGTGACAACCTGATTTG 58.649 37.500 0.00 0.00 33.93 2.32
51 52 5.451798 GGACAAACATGTGACAACCTGATTT 60.452 40.000 0.00 0.00 0.00 2.17
52 53 4.037923 GGACAAACATGTGACAACCTGATT 59.962 41.667 0.00 0.00 0.00 2.57
53 54 3.569701 GGACAAACATGTGACAACCTGAT 59.430 43.478 0.00 0.00 0.00 2.90
54 55 2.948979 GGACAAACATGTGACAACCTGA 59.051 45.455 0.00 0.00 0.00 3.86
55 56 2.687425 TGGACAAACATGTGACAACCTG 59.313 45.455 0.00 0.00 0.00 4.00
56 57 3.011566 TGGACAAACATGTGACAACCT 57.988 42.857 0.00 0.00 0.00 3.50
57 58 3.443976 GTTGGACAAACATGTGACAACC 58.556 45.455 0.00 0.72 38.75 3.77
58 59 3.105203 CGTTGGACAAACATGTGACAAC 58.895 45.455 0.00 9.74 38.84 3.32
59 60 3.010420 TCGTTGGACAAACATGTGACAA 58.990 40.909 0.00 0.00 38.84 3.18
60 61 2.633488 TCGTTGGACAAACATGTGACA 58.367 42.857 0.00 0.00 38.84 3.58
61 62 3.684103 TTCGTTGGACAAACATGTGAC 57.316 42.857 0.00 0.00 38.84 3.67
62 63 4.578516 AGATTTCGTTGGACAAACATGTGA 59.421 37.500 0.00 0.00 38.84 3.58
63 64 4.858935 AGATTTCGTTGGACAAACATGTG 58.141 39.130 0.00 0.00 38.84 3.21
64 65 5.529430 TGTAGATTTCGTTGGACAAACATGT 59.471 36.000 0.00 0.00 38.84 3.21
65 66 5.851177 GTGTAGATTTCGTTGGACAAACATG 59.149 40.000 0.00 0.00 38.84 3.21
66 67 5.529430 TGTGTAGATTTCGTTGGACAAACAT 59.471 36.000 0.00 0.00 38.84 2.71
67 68 4.876679 TGTGTAGATTTCGTTGGACAAACA 59.123 37.500 0.00 0.00 38.84 2.83
68 69 5.412526 TGTGTAGATTTCGTTGGACAAAC 57.587 39.130 0.00 0.00 35.25 2.93
69 70 5.561919 GCATGTGTAGATTTCGTTGGACAAA 60.562 40.000 0.00 0.00 0.00 2.83
70 71 4.083537 GCATGTGTAGATTTCGTTGGACAA 60.084 41.667 0.00 0.00 0.00 3.18
71 72 3.435327 GCATGTGTAGATTTCGTTGGACA 59.565 43.478 0.00 0.00 0.00 4.02
72 73 3.435327 TGCATGTGTAGATTTCGTTGGAC 59.565 43.478 0.00 0.00 0.00 4.02
73 74 3.669536 TGCATGTGTAGATTTCGTTGGA 58.330 40.909 0.00 0.00 0.00 3.53
74 75 4.418013 TTGCATGTGTAGATTTCGTTGG 57.582 40.909 0.00 0.00 0.00 3.77
75 76 5.451908 ACTTTGCATGTGTAGATTTCGTTG 58.548 37.500 0.00 0.00 0.00 4.10
76 77 5.689383 ACTTTGCATGTGTAGATTTCGTT 57.311 34.783 0.00 0.00 0.00 3.85
77 78 5.238432 TGAACTTTGCATGTGTAGATTTCGT 59.762 36.000 0.00 0.00 0.00 3.85
78 79 5.688823 TGAACTTTGCATGTGTAGATTTCG 58.311 37.500 0.00 0.00 0.00 3.46
79 80 6.072508 TCCTGAACTTTGCATGTGTAGATTTC 60.073 38.462 0.00 0.00 0.00 2.17
80 81 5.769662 TCCTGAACTTTGCATGTGTAGATTT 59.230 36.000 0.00 0.00 0.00 2.17
81 82 5.316167 TCCTGAACTTTGCATGTGTAGATT 58.684 37.500 0.00 0.00 0.00 2.40
82 83 4.910195 TCCTGAACTTTGCATGTGTAGAT 58.090 39.130 0.00 0.00 0.00 1.98
83 84 4.350368 TCCTGAACTTTGCATGTGTAGA 57.650 40.909 0.00 0.00 0.00 2.59
84 85 6.595326 TCTTATCCTGAACTTTGCATGTGTAG 59.405 38.462 0.00 0.00 0.00 2.74
85 86 6.472016 TCTTATCCTGAACTTTGCATGTGTA 58.528 36.000 0.00 0.00 0.00 2.90
86 87 5.316167 TCTTATCCTGAACTTTGCATGTGT 58.684 37.500 0.00 0.00 0.00 3.72
87 88 5.885230 TCTTATCCTGAACTTTGCATGTG 57.115 39.130 0.00 0.00 0.00 3.21
88 89 6.094603 GTCATCTTATCCTGAACTTTGCATGT 59.905 38.462 0.00 0.00 0.00 3.21
89 90 6.094464 TGTCATCTTATCCTGAACTTTGCATG 59.906 38.462 0.00 0.00 0.00 4.06
90 91 6.182627 TGTCATCTTATCCTGAACTTTGCAT 58.817 36.000 0.00 0.00 0.00 3.96
91 92 5.559770 TGTCATCTTATCCTGAACTTTGCA 58.440 37.500 0.00 0.00 0.00 4.08
92 93 6.317857 GTTGTCATCTTATCCTGAACTTTGC 58.682 40.000 0.00 0.00 0.00 3.68
93 94 6.368791 TCGTTGTCATCTTATCCTGAACTTTG 59.631 38.462 0.00 0.00 0.00 2.77
94 95 6.464222 TCGTTGTCATCTTATCCTGAACTTT 58.536 36.000 0.00 0.00 0.00 2.66
95 96 6.037786 TCGTTGTCATCTTATCCTGAACTT 57.962 37.500 0.00 0.00 0.00 2.66
96 97 5.186021 ACTCGTTGTCATCTTATCCTGAACT 59.814 40.000 0.00 0.00 0.00 3.01
97 98 5.411781 ACTCGTTGTCATCTTATCCTGAAC 58.588 41.667 0.00 0.00 0.00 3.18
98 99 5.661056 ACTCGTTGTCATCTTATCCTGAA 57.339 39.130 0.00 0.00 0.00 3.02
99 100 5.299531 CCTACTCGTTGTCATCTTATCCTGA 59.700 44.000 0.00 0.00 0.00 3.86
100 101 5.067936 ACCTACTCGTTGTCATCTTATCCTG 59.932 44.000 0.00 0.00 0.00 3.86
101 102 5.202004 ACCTACTCGTTGTCATCTTATCCT 58.798 41.667 0.00 0.00 0.00 3.24
102 103 5.067413 TGACCTACTCGTTGTCATCTTATCC 59.933 44.000 0.00 0.00 34.28 2.59
103 104 5.972382 GTGACCTACTCGTTGTCATCTTATC 59.028 44.000 0.00 0.00 40.75 1.75
104 105 5.417894 TGTGACCTACTCGTTGTCATCTTAT 59.582 40.000 0.00 0.00 40.75 1.73
105 106 4.763279 TGTGACCTACTCGTTGTCATCTTA 59.237 41.667 0.00 0.00 40.75 2.10
106 107 3.572682 TGTGACCTACTCGTTGTCATCTT 59.427 43.478 0.00 0.00 40.75 2.40
107 108 3.057456 GTGTGACCTACTCGTTGTCATCT 60.057 47.826 0.00 0.00 40.75 2.90
108 109 3.057456 AGTGTGACCTACTCGTTGTCATC 60.057 47.826 0.00 0.00 40.75 2.92
109 110 2.891580 AGTGTGACCTACTCGTTGTCAT 59.108 45.455 0.00 0.00 40.75 3.06
110 111 2.304092 AGTGTGACCTACTCGTTGTCA 58.696 47.619 0.00 0.00 36.71 3.58
111 112 3.050619 CAAGTGTGACCTACTCGTTGTC 58.949 50.000 0.00 0.00 0.00 3.18
112 113 2.691526 TCAAGTGTGACCTACTCGTTGT 59.308 45.455 0.00 0.00 0.00 3.32
113 114 3.364889 TCAAGTGTGACCTACTCGTTG 57.635 47.619 0.00 0.00 0.00 4.10
114 115 4.395959 TTTCAAGTGTGACCTACTCGTT 57.604 40.909 0.00 0.00 31.90 3.85
115 116 4.395959 TTTTCAAGTGTGACCTACTCGT 57.604 40.909 0.00 0.00 31.90 4.18
116 117 4.988540 TCATTTTCAAGTGTGACCTACTCG 59.011 41.667 0.00 0.00 31.90 4.18
117 118 6.128172 CCATCATTTTCAAGTGTGACCTACTC 60.128 42.308 0.00 0.00 31.90 2.59
118 119 5.707298 CCATCATTTTCAAGTGTGACCTACT 59.293 40.000 0.00 0.00 31.90 2.57
119 120 5.473504 ACCATCATTTTCAAGTGTGACCTAC 59.526 40.000 0.00 0.00 31.90 3.18
120 121 5.473162 CACCATCATTTTCAAGTGTGACCTA 59.527 40.000 0.00 0.00 31.90 3.08
121 122 4.279169 CACCATCATTTTCAAGTGTGACCT 59.721 41.667 0.00 0.00 31.90 3.85
122 123 4.278170 TCACCATCATTTTCAAGTGTGACC 59.722 41.667 0.00 0.00 31.90 4.02
123 124 5.437289 TCACCATCATTTTCAAGTGTGAC 57.563 39.130 0.00 0.00 31.90 3.67
124 125 5.009911 CCTTCACCATCATTTTCAAGTGTGA 59.990 40.000 0.00 0.00 0.00 3.58
125 126 5.009911 TCCTTCACCATCATTTTCAAGTGTG 59.990 40.000 0.00 0.00 0.00 3.82
126 127 5.010012 GTCCTTCACCATCATTTTCAAGTGT 59.990 40.000 0.00 0.00 0.00 3.55
127 128 5.242393 AGTCCTTCACCATCATTTTCAAGTG 59.758 40.000 0.00 0.00 0.00 3.16
128 129 5.388654 AGTCCTTCACCATCATTTTCAAGT 58.611 37.500 0.00 0.00 0.00 3.16
129 130 5.972107 AGTCCTTCACCATCATTTTCAAG 57.028 39.130 0.00 0.00 0.00 3.02
130 131 6.729690 AAAGTCCTTCACCATCATTTTCAA 57.270 33.333 0.00 0.00 0.00 2.69
131 132 6.729690 AAAAGTCCTTCACCATCATTTTCA 57.270 33.333 0.00 0.00 0.00 2.69
132 133 7.657336 TGTAAAAGTCCTTCACCATCATTTTC 58.343 34.615 0.00 0.00 0.00 2.29
133 134 7.505585 TCTGTAAAAGTCCTTCACCATCATTTT 59.494 33.333 0.00 0.00 0.00 1.82
134 135 7.004086 TCTGTAAAAGTCCTTCACCATCATTT 58.996 34.615 0.00 0.00 0.00 2.32
135 136 6.542821 TCTGTAAAAGTCCTTCACCATCATT 58.457 36.000 0.00 0.00 0.00 2.57
136 137 6.126863 TCTGTAAAAGTCCTTCACCATCAT 57.873 37.500 0.00 0.00 0.00 2.45
137 138 5.560722 TCTGTAAAAGTCCTTCACCATCA 57.439 39.130 0.00 0.00 0.00 3.07
138 139 6.173339 TGATCTGTAAAAGTCCTTCACCATC 58.827 40.000 0.00 0.00 0.00 3.51
139 140 6.126863 TGATCTGTAAAAGTCCTTCACCAT 57.873 37.500 0.00 0.00 0.00 3.55
140 141 5.560722 TGATCTGTAAAAGTCCTTCACCA 57.439 39.130 0.00 0.00 0.00 4.17
141 142 7.040409 ACAAATGATCTGTAAAAGTCCTTCACC 60.040 37.037 0.00 0.00 0.00 4.02
142 143 7.875971 ACAAATGATCTGTAAAAGTCCTTCAC 58.124 34.615 0.00 0.00 0.00 3.18
143 144 7.174946 GGACAAATGATCTGTAAAAGTCCTTCA 59.825 37.037 0.00 0.00 39.79 3.02
144 145 7.174946 TGGACAAATGATCTGTAAAAGTCCTTC 59.825 37.037 0.00 0.00 42.54 3.46
145 146 7.004086 TGGACAAATGATCTGTAAAAGTCCTT 58.996 34.615 0.00 0.00 42.54 3.36
146 147 6.542821 TGGACAAATGATCTGTAAAAGTCCT 58.457 36.000 0.00 0.00 42.54 3.85
147 148 6.817765 TGGACAAATGATCTGTAAAAGTCC 57.182 37.500 0.00 0.00 42.44 3.85
148 149 8.514594 TCAATGGACAAATGATCTGTAAAAGTC 58.485 33.333 0.00 0.00 0.00 3.01
149 150 8.299570 GTCAATGGACAAATGATCTGTAAAAGT 58.700 33.333 0.00 0.00 43.73 2.66
150 151 8.517878 AGTCAATGGACAAATGATCTGTAAAAG 58.482 33.333 2.34 0.00 46.80 2.27
151 152 8.298854 CAGTCAATGGACAAATGATCTGTAAAA 58.701 33.333 2.34 0.00 46.80 1.52
152 153 7.448161 ACAGTCAATGGACAAATGATCTGTAAA 59.552 33.333 2.34 0.00 46.80 2.01
153 154 6.942005 ACAGTCAATGGACAAATGATCTGTAA 59.058 34.615 2.34 0.00 46.80 2.41
154 155 6.475504 ACAGTCAATGGACAAATGATCTGTA 58.524 36.000 2.34 0.00 46.80 2.74
155 156 5.319453 ACAGTCAATGGACAAATGATCTGT 58.681 37.500 2.34 13.85 46.80 3.41
156 157 5.163683 GGACAGTCAATGGACAAATGATCTG 60.164 44.000 2.34 13.13 46.80 2.90
157 158 4.946157 GGACAGTCAATGGACAAATGATCT 59.054 41.667 2.34 0.00 46.80 2.75
158 159 4.701651 TGGACAGTCAATGGACAAATGATC 59.298 41.667 2.34 0.00 46.80 2.92
159 160 4.665451 TGGACAGTCAATGGACAAATGAT 58.335 39.130 2.34 0.00 46.80 2.45
160 161 4.097551 TGGACAGTCAATGGACAAATGA 57.902 40.909 2.34 0.00 46.80 2.57
161 162 6.375174 TCTTATGGACAGTCAATGGACAAATG 59.625 38.462 2.34 0.00 46.80 2.32
162 163 6.375455 GTCTTATGGACAGTCAATGGACAAAT 59.625 38.462 15.47 0.00 42.64 2.32
163 164 5.705441 GTCTTATGGACAGTCAATGGACAAA 59.295 40.000 15.47 0.00 42.64 2.83
164 165 5.013079 AGTCTTATGGACAGTCAATGGACAA 59.987 40.000 19.51 1.42 46.72 3.18
165 166 4.532126 AGTCTTATGGACAGTCAATGGACA 59.468 41.667 19.51 3.87 46.72 4.02
166 167 5.091261 AGTCTTATGGACAGTCAATGGAC 57.909 43.478 13.72 13.72 46.72 4.02
167 168 5.248248 TCAAGTCTTATGGACAGTCAATGGA 59.752 40.000 2.17 0.00 46.72 3.41
168 169 5.491070 TCAAGTCTTATGGACAGTCAATGG 58.509 41.667 2.17 0.00 46.72 3.16
169 170 6.128172 GGTTCAAGTCTTATGGACAGTCAATG 60.128 42.308 2.17 0.00 46.72 2.82
170 171 5.940470 GGTTCAAGTCTTATGGACAGTCAAT 59.060 40.000 2.17 0.00 46.72 2.57
171 172 5.163248 TGGTTCAAGTCTTATGGACAGTCAA 60.163 40.000 2.17 0.00 46.72 3.18
172 173 4.346709 TGGTTCAAGTCTTATGGACAGTCA 59.653 41.667 2.17 0.00 46.72 3.41
173 174 4.894784 TGGTTCAAGTCTTATGGACAGTC 58.105 43.478 0.00 0.00 46.72 3.51
174 175 4.974645 TGGTTCAAGTCTTATGGACAGT 57.025 40.909 0.00 0.00 46.72 3.55
175 176 5.308825 AGTTGGTTCAAGTCTTATGGACAG 58.691 41.667 0.00 0.00 46.72 3.51
176 177 5.304686 AGTTGGTTCAAGTCTTATGGACA 57.695 39.130 0.00 0.00 46.72 4.02
177 178 5.763204 TGAAGTTGGTTCAAGTCTTATGGAC 59.237 40.000 0.00 0.00 42.49 4.02
178 179 5.935945 TGAAGTTGGTTCAAGTCTTATGGA 58.064 37.500 0.00 0.00 42.49 3.41
189 190 7.717436 TGAACTATGTATTGTGAAGTTGGTTCA 59.283 33.333 0.00 0.00 43.26 3.18
190 191 8.094798 TGAACTATGTATTGTGAAGTTGGTTC 57.905 34.615 0.00 0.00 35.48 3.62
191 192 7.719633 ACTGAACTATGTATTGTGAAGTTGGTT 59.280 33.333 0.00 0.00 30.83 3.67
192 193 7.224297 ACTGAACTATGTATTGTGAAGTTGGT 58.776 34.615 0.00 0.00 30.83 3.67
193 194 7.672983 ACTGAACTATGTATTGTGAAGTTGG 57.327 36.000 0.00 0.00 30.83 3.77
194 195 8.773645 TGAACTGAACTATGTATTGTGAAGTTG 58.226 33.333 9.81 0.00 30.83 3.16
195 196 8.774586 GTGAACTGAACTATGTATTGTGAAGTT 58.225 33.333 6.69 6.69 33.26 2.66
196 197 7.931407 TGTGAACTGAACTATGTATTGTGAAGT 59.069 33.333 0.00 0.00 0.00 3.01
197 198 8.223769 GTGTGAACTGAACTATGTATTGTGAAG 58.776 37.037 0.00 0.00 0.00 3.02
198 199 7.172532 GGTGTGAACTGAACTATGTATTGTGAA 59.827 37.037 0.00 0.00 0.00 3.18
199 200 6.649141 GGTGTGAACTGAACTATGTATTGTGA 59.351 38.462 0.00 0.00 0.00 3.58
200 201 6.426633 TGGTGTGAACTGAACTATGTATTGTG 59.573 38.462 0.00 0.00 0.00 3.33
201 202 6.530120 TGGTGTGAACTGAACTATGTATTGT 58.470 36.000 0.00 0.00 0.00 2.71
202 203 7.433708 TTGGTGTGAACTGAACTATGTATTG 57.566 36.000 0.00 0.00 0.00 1.90
203 204 8.635765 ATTTGGTGTGAACTGAACTATGTATT 57.364 30.769 0.00 0.00 0.00 1.89
204 205 8.514594 CAATTTGGTGTGAACTGAACTATGTAT 58.485 33.333 0.00 0.00 0.00 2.29
205 206 7.521423 GCAATTTGGTGTGAACTGAACTATGTA 60.521 37.037 0.00 0.00 0.00 2.29
206 207 6.735694 GCAATTTGGTGTGAACTGAACTATGT 60.736 38.462 0.00 0.00 0.00 2.29
207 208 5.630680 GCAATTTGGTGTGAACTGAACTATG 59.369 40.000 0.00 0.00 0.00 2.23
208 209 5.301551 TGCAATTTGGTGTGAACTGAACTAT 59.698 36.000 0.00 0.00 0.00 2.12
209 210 4.642437 TGCAATTTGGTGTGAACTGAACTA 59.358 37.500 0.00 0.00 0.00 2.24
210 211 3.446873 TGCAATTTGGTGTGAACTGAACT 59.553 39.130 0.00 0.00 0.00 3.01
211 212 3.779759 TGCAATTTGGTGTGAACTGAAC 58.220 40.909 0.00 0.00 0.00 3.18
212 213 4.462508 TTGCAATTTGGTGTGAACTGAA 57.537 36.364 0.00 0.00 0.00 3.02
213 214 4.462508 TTTGCAATTTGGTGTGAACTGA 57.537 36.364 0.00 0.00 0.00 3.41
214 215 5.051816 AGATTTGCAATTTGGTGTGAACTG 58.948 37.500 0.00 0.00 0.00 3.16
215 216 5.280654 AGATTTGCAATTTGGTGTGAACT 57.719 34.783 0.00 0.00 0.00 3.01
216 217 6.701400 AGTTAGATTTGCAATTTGGTGTGAAC 59.299 34.615 0.00 0.00 0.00 3.18
217 218 6.815089 AGTTAGATTTGCAATTTGGTGTGAA 58.185 32.000 0.00 0.00 0.00 3.18
218 219 6.403866 AGTTAGATTTGCAATTTGGTGTGA 57.596 33.333 0.00 0.00 0.00 3.58
219 220 6.146021 GGAAGTTAGATTTGCAATTTGGTGTG 59.854 38.462 0.00 0.00 0.00 3.82
220 221 6.183360 TGGAAGTTAGATTTGCAATTTGGTGT 60.183 34.615 0.00 0.00 0.00 4.16
221 222 6.222389 TGGAAGTTAGATTTGCAATTTGGTG 58.778 36.000 0.00 0.00 0.00 4.17
222 223 6.418057 TGGAAGTTAGATTTGCAATTTGGT 57.582 33.333 0.00 0.00 0.00 3.67
223 224 6.183360 GCATGGAAGTTAGATTTGCAATTTGG 60.183 38.462 0.00 0.00 29.63 3.28
224 225 6.592607 AGCATGGAAGTTAGATTTGCAATTTG 59.407 34.615 0.00 0.00 29.63 2.32
225 226 6.704310 AGCATGGAAGTTAGATTTGCAATTT 58.296 32.000 0.00 0.00 29.63 1.82
226 227 6.290294 AGCATGGAAGTTAGATTTGCAATT 57.710 33.333 0.00 0.00 29.63 2.32
227 228 5.927281 AGCATGGAAGTTAGATTTGCAAT 57.073 34.783 0.00 0.00 29.63 3.56
228 229 5.243507 TGAAGCATGGAAGTTAGATTTGCAA 59.756 36.000 0.00 0.00 29.63 4.08
229 230 4.766373 TGAAGCATGGAAGTTAGATTTGCA 59.234 37.500 0.00 0.00 0.00 4.08
230 231 5.314923 TGAAGCATGGAAGTTAGATTTGC 57.685 39.130 0.00 0.00 0.00 3.68
231 232 8.248945 AGAAATGAAGCATGGAAGTTAGATTTG 58.751 33.333 0.00 0.00 0.00 2.32
232 233 8.358582 AGAAATGAAGCATGGAAGTTAGATTT 57.641 30.769 0.00 0.00 0.00 2.17
233 234 7.613022 TGAGAAATGAAGCATGGAAGTTAGATT 59.387 33.333 0.00 0.00 0.00 2.40
234 235 7.114754 TGAGAAATGAAGCATGGAAGTTAGAT 58.885 34.615 0.00 0.00 0.00 1.98
235 236 6.475504 TGAGAAATGAAGCATGGAAGTTAGA 58.524 36.000 0.00 0.00 0.00 2.10
236 237 6.748333 TGAGAAATGAAGCATGGAAGTTAG 57.252 37.500 0.00 0.00 0.00 2.34
237 238 6.489700 TGTTGAGAAATGAAGCATGGAAGTTA 59.510 34.615 0.00 0.00 0.00 2.24
238 239 5.302568 TGTTGAGAAATGAAGCATGGAAGTT 59.697 36.000 0.00 0.00 0.00 2.66
239 240 4.828939 TGTTGAGAAATGAAGCATGGAAGT 59.171 37.500 0.00 0.00 0.00 3.01
240 241 5.381174 TGTTGAGAAATGAAGCATGGAAG 57.619 39.130 0.00 0.00 0.00 3.46
241 242 5.988310 ATGTTGAGAAATGAAGCATGGAA 57.012 34.783 0.00 0.00 0.00 3.53
242 243 7.649533 AATATGTTGAGAAATGAAGCATGGA 57.350 32.000 0.00 0.00 0.00 3.41
243 244 9.976511 ATAAATATGTTGAGAAATGAAGCATGG 57.023 29.630 0.00 0.00 0.00 3.66
270 271 9.125026 GAAACATGGAAGTCATATAGGATTTGT 57.875 33.333 0.00 0.00 34.12 2.83
271 272 9.123902 TGAAACATGGAAGTCATATAGGATTTG 57.876 33.333 0.00 0.00 34.12 2.32
272 273 9.872684 ATGAAACATGGAAGTCATATAGGATTT 57.127 29.630 0.00 0.00 34.12 2.17
273 274 9.293404 CATGAAACATGGAAGTCATATAGGATT 57.707 33.333 0.00 0.00 34.12 3.01
274 275 8.443176 ACATGAAACATGGAAGTCATATAGGAT 58.557 33.333 14.70 0.00 34.12 3.24
275 276 7.805163 ACATGAAACATGGAAGTCATATAGGA 58.195 34.615 14.70 0.00 34.12 2.94
276 277 7.935755 AGACATGAAACATGGAAGTCATATAGG 59.064 37.037 14.70 0.00 34.12 2.57
277 278 8.899427 AGACATGAAACATGGAAGTCATATAG 57.101 34.615 14.70 0.00 34.12 1.31
278 279 9.685276 AAAGACATGAAACATGGAAGTCATATA 57.315 29.630 14.70 0.00 34.12 0.86
279 280 8.464404 CAAAGACATGAAACATGGAAGTCATAT 58.536 33.333 14.70 0.00 34.12 1.78
280 281 7.448161 ACAAAGACATGAAACATGGAAGTCATA 59.552 33.333 14.70 0.00 34.12 2.15
281 282 6.266103 ACAAAGACATGAAACATGGAAGTCAT 59.734 34.615 14.70 0.00 36.31 3.06
282 283 5.593909 ACAAAGACATGAAACATGGAAGTCA 59.406 36.000 14.70 0.00 0.00 3.41
283 284 6.076981 ACAAAGACATGAAACATGGAAGTC 57.923 37.500 14.70 4.83 0.00 3.01
284 285 7.765695 ATACAAAGACATGAAACATGGAAGT 57.234 32.000 14.70 8.77 0.00 3.01
285 286 8.950210 AGTATACAAAGACATGAAACATGGAAG 58.050 33.333 14.70 4.36 0.00 3.46
286 287 8.862325 AGTATACAAAGACATGAAACATGGAA 57.138 30.769 14.70 0.00 0.00 3.53
287 288 8.729756 CAAGTATACAAAGACATGAAACATGGA 58.270 33.333 14.70 0.00 0.00 3.41
288 289 8.514594 ACAAGTATACAAAGACATGAAACATGG 58.485 33.333 14.70 1.33 0.00 3.66
289 290 9.546909 GACAAGTATACAAAGACATGAAACATG 57.453 33.333 5.50 9.72 0.00 3.21
290 291 9.283768 TGACAAGTATACAAAGACATGAAACAT 57.716 29.630 5.50 0.00 0.00 2.71
291 292 8.669946 TGACAAGTATACAAAGACATGAAACA 57.330 30.769 5.50 0.00 0.00 2.83
292 293 9.944663 TTTGACAAGTATACAAAGACATGAAAC 57.055 29.630 5.50 0.00 0.00 2.78
296 297 9.559958 GGATTTTGACAAGTATACAAAGACATG 57.440 33.333 5.50 0.00 35.48 3.21
297 298 8.739972 GGGATTTTGACAAGTATACAAAGACAT 58.260 33.333 5.50 0.00 35.48 3.06
298 299 7.942341 AGGGATTTTGACAAGTATACAAAGACA 59.058 33.333 5.50 0.00 35.48 3.41
299 300 8.336801 AGGGATTTTGACAAGTATACAAAGAC 57.663 34.615 5.50 0.00 35.48 3.01
300 301 9.444600 GTAGGGATTTTGACAAGTATACAAAGA 57.555 33.333 5.50 0.00 35.48 2.52
301 302 8.674607 GGTAGGGATTTTGACAAGTATACAAAG 58.325 37.037 5.50 0.00 35.48 2.77
302 303 8.164733 TGGTAGGGATTTTGACAAGTATACAAA 58.835 33.333 5.50 0.00 0.00 2.83
303 304 7.691213 TGGTAGGGATTTTGACAAGTATACAA 58.309 34.615 5.50 0.00 0.00 2.41
304 305 7.260387 TGGTAGGGATTTTGACAAGTATACA 57.740 36.000 5.50 0.00 0.00 2.29
305 306 8.747538 AATGGTAGGGATTTTGACAAGTATAC 57.252 34.615 0.00 0.00 0.00 1.47
306 307 9.762381 AAAATGGTAGGGATTTTGACAAGTATA 57.238 29.630 0.00 0.00 32.89 1.47
307 308 8.664669 AAAATGGTAGGGATTTTGACAAGTAT 57.335 30.769 0.00 0.00 32.89 2.12
308 309 9.762381 ATAAAATGGTAGGGATTTTGACAAGTA 57.238 29.630 0.00 0.00 35.25 2.24
309 310 6.994421 AAAATGGTAGGGATTTTGACAAGT 57.006 33.333 0.00 0.00 32.89 3.16
311 312 8.691797 GCTATAAAATGGTAGGGATTTTGACAA 58.308 33.333 0.00 0.00 35.25 3.18
312 313 7.836685 TGCTATAAAATGGTAGGGATTTTGACA 59.163 33.333 0.00 0.00 35.25 3.58
313 314 8.232913 TGCTATAAAATGGTAGGGATTTTGAC 57.767 34.615 0.00 0.00 35.25 3.18
314 315 8.830915 TTGCTATAAAATGGTAGGGATTTTGA 57.169 30.769 0.00 0.00 35.25 2.69
315 316 9.883142 TTTTGCTATAAAATGGTAGGGATTTTG 57.117 29.630 0.00 0.00 35.25 2.44
328 329 5.518487 CGCCCGTTCATTTTTGCTATAAAAT 59.482 36.000 0.00 0.00 38.02 1.82
329 330 4.859798 CGCCCGTTCATTTTTGCTATAAAA 59.140 37.500 0.00 0.00 0.00 1.52
330 331 4.416620 CGCCCGTTCATTTTTGCTATAAA 58.583 39.130 0.00 0.00 0.00 1.40
331 332 3.732471 GCGCCCGTTCATTTTTGCTATAA 60.732 43.478 0.00 0.00 0.00 0.98
332 333 2.223386 GCGCCCGTTCATTTTTGCTATA 60.223 45.455 0.00 0.00 0.00 1.31
333 334 1.469079 GCGCCCGTTCATTTTTGCTAT 60.469 47.619 0.00 0.00 0.00 2.97
334 335 0.109504 GCGCCCGTTCATTTTTGCTA 60.110 50.000 0.00 0.00 0.00 3.49
335 336 1.372872 GCGCCCGTTCATTTTTGCT 60.373 52.632 0.00 0.00 0.00 3.91
336 337 1.616872 CTGCGCCCGTTCATTTTTGC 61.617 55.000 4.18 0.00 0.00 3.68
337 338 1.616872 GCTGCGCCCGTTCATTTTTG 61.617 55.000 4.18 0.00 0.00 2.44
338 339 1.372872 GCTGCGCCCGTTCATTTTT 60.373 52.632 4.18 0.00 0.00 1.94
339 340 2.081425 TTGCTGCGCCCGTTCATTTT 62.081 50.000 4.18 0.00 0.00 1.82
340 341 2.560119 TTGCTGCGCCCGTTCATTT 61.560 52.632 4.18 0.00 0.00 2.32
341 342 2.983030 TTGCTGCGCCCGTTCATT 60.983 55.556 4.18 0.00 0.00 2.57
342 343 3.737172 GTTGCTGCGCCCGTTCAT 61.737 61.111 4.18 0.00 0.00 2.57
360 361 2.354656 TAGATCATGACGGCGCGC 60.355 61.111 25.94 25.94 0.00 6.86
361 362 0.999228 GACTAGATCATGACGGCGCG 60.999 60.000 6.90 0.00 0.00 6.86
362 363 0.999228 CGACTAGATCATGACGGCGC 60.999 60.000 6.90 0.00 0.00 6.53
363 364 0.308068 ACGACTAGATCATGACGGCG 59.692 55.000 4.80 4.80 0.00 6.46
364 365 3.833545 ATACGACTAGATCATGACGGC 57.166 47.619 0.00 0.00 0.00 5.68
371 372 9.841880 GTGCTGATTATTAATACGACTAGATCA 57.158 33.333 0.00 0.00 0.00 2.92
372 373 9.291664 GGTGCTGATTATTAATACGACTAGATC 57.708 37.037 0.00 0.00 0.00 2.75
373 374 8.803235 TGGTGCTGATTATTAATACGACTAGAT 58.197 33.333 0.00 0.00 0.00 1.98
374 375 8.080417 GTGGTGCTGATTATTAATACGACTAGA 58.920 37.037 0.00 0.00 0.00 2.43
375 376 7.060748 CGTGGTGCTGATTATTAATACGACTAG 59.939 40.741 0.00 0.00 0.00 2.57
376 377 6.859508 CGTGGTGCTGATTATTAATACGACTA 59.140 38.462 0.00 0.00 0.00 2.59
377 378 5.690409 CGTGGTGCTGATTATTAATACGACT 59.310 40.000 0.00 0.00 0.00 4.18
378 379 5.461078 ACGTGGTGCTGATTATTAATACGAC 59.539 40.000 10.82 3.62 0.00 4.34
457 458 4.598062 GGCATAAACAAAGACGATTAGGC 58.402 43.478 0.00 0.00 35.11 3.93
505 518 0.179062 CTTCTTCCTCCGGCCATCAG 60.179 60.000 2.24 0.00 0.00 2.90
538 559 4.045104 GGATATATATTCTGTCGCCTGCG 58.955 47.826 4.92 4.92 41.35 5.18
618 655 4.156922 ACACAGATCAGTAGACTAGTGCAC 59.843 45.833 9.40 9.40 0.00 4.57
669 1020 2.047179 GTCTTCAGGACCACCGGC 60.047 66.667 0.00 0.00 41.83 6.13
678 1029 2.993853 GGCCTCCAGGTCTTCAGG 59.006 66.667 0.00 0.00 36.72 3.86
1009 1365 0.883833 AATGCTAGCTGTGTTGGTGC 59.116 50.000 17.23 0.00 0.00 5.01
1051 1424 0.042581 TGAGAGGTAGTGATGGGGCA 59.957 55.000 0.00 0.00 0.00 5.36
1062 1435 3.701542 CTGGCAGTAGTGATTGAGAGGTA 59.298 47.826 6.28 0.00 0.00 3.08
1065 1438 3.883830 ACTGGCAGTAGTGATTGAGAG 57.116 47.619 20.61 0.00 0.00 3.20
1066 1439 4.991153 CTACTGGCAGTAGTGATTGAGA 57.009 45.455 35.70 12.01 42.41 3.27
1074 1447 7.180165 GCTTAAGCTAGCTACTGGCAGTAGT 62.180 48.000 40.11 31.34 42.75 2.73
1075 1448 4.794655 GCTTAAGCTAGCTACTGGCAGTAG 60.795 50.000 38.29 38.29 43.17 2.57
1076 1449 3.068307 GCTTAAGCTAGCTACTGGCAGTA 59.932 47.826 24.84 24.84 40.47 2.74
1120 1499 2.904932 GCGAATCAAAAGCTTGAAGTCG 59.095 45.455 16.61 16.61 46.11 4.18
1133 1513 0.176910 TGAGTATGCCGGCGAATCAA 59.823 50.000 23.88 6.59 0.00 2.57
1259 1653 4.241555 CTTCCTATGCCGCCCGCT 62.242 66.667 0.00 0.00 38.78 5.52
1577 2102 1.869774 TCAAGCATATGTAGCCAGCG 58.130 50.000 4.29 0.00 0.00 5.18
1586 2111 8.944029 ACTAAGCATAGCTAAATCAAGCATATG 58.056 33.333 0.00 0.00 45.30 1.78
1633 2162 6.095720 TCGATCAAAAACACAAGGGTACTTTT 59.904 34.615 0.00 0.00 33.81 2.27
1640 2169 4.202010 ACAAGTCGATCAAAAACACAAGGG 60.202 41.667 0.00 0.00 0.00 3.95
1811 2528 1.833630 TGGATAGCCTGTTGACTCCTG 59.166 52.381 0.00 0.00 34.31 3.86
2176 2946 9.232473 GGGCAGATGTATATATATGATCGAGTA 57.768 37.037 8.14 0.00 0.00 2.59
2397 3200 1.195448 GCAGTCACACACTACACATGC 59.805 52.381 0.00 0.00 32.21 4.06
2429 3232 1.203001 TCAATGTTGTCCCAACCCCTC 60.203 52.381 4.78 0.00 0.00 4.30
2433 3236 5.418840 ACATAATCTCAATGTTGTCCCAACC 59.581 40.000 4.78 0.00 33.83 3.77
2593 3396 2.185387 TCACTGCTTTCCCCTACCTAC 58.815 52.381 0.00 0.00 0.00 3.18
2595 3398 1.742308 TTCACTGCTTTCCCCTACCT 58.258 50.000 0.00 0.00 0.00 3.08
2606 3409 7.489113 CACAACTAAGTCAAAAATTTCACTGCT 59.511 33.333 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.