Multiple sequence alignment - TraesCS3B01G261900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G261900 chr3B 100.000 4501 0 0 1 4501 420039741 420035241 0.000000e+00 8312.0
1 TraesCS3B01G261900 chr3B 85.616 146 15 4 4162 4307 598998729 598998590 1.010000e-31 148.0
2 TraesCS3B01G261900 chr3B 85.714 98 13 1 4362 4459 598998696 598998600 7.970000e-18 102.0
3 TraesCS3B01G261900 chr3D 90.193 2019 82 45 769 2755 301221600 301223534 0.000000e+00 2525.0
4 TraesCS3B01G261900 chr3D 87.465 1436 79 49 2773 4160 301223520 301224902 0.000000e+00 1561.0
5 TraesCS3B01G261900 chr3D 90.849 754 35 14 1 742 301220871 301221602 0.000000e+00 979.0
6 TraesCS3B01G261900 chr3D 83.133 166 23 3 4162 4324 48622715 48622878 3.630000e-31 147.0
7 TraesCS3B01G261900 chr3A 91.573 1151 51 14 812 1949 434131056 434129939 0.000000e+00 1546.0
8 TraesCS3B01G261900 chr3A 88.964 1042 51 25 2013 3023 434129898 434128890 0.000000e+00 1229.0
9 TraesCS3B01G261900 chr3A 93.103 754 34 9 1 740 434131829 434131080 0.000000e+00 1088.0
10 TraesCS3B01G261900 chr3A 86.826 668 52 18 3025 3681 434128854 434128212 0.000000e+00 713.0
11 TraesCS3B01G261900 chr3A 91.089 202 7 4 3958 4155 434126397 434126203 3.450000e-66 263.0
12 TraesCS3B01G261900 chr3A 88.718 195 20 2 3773 3966 434128174 434127981 2.090000e-58 237.0
13 TraesCS3B01G261900 chr3A 80.672 119 19 3 4375 4491 240376083 240375967 6.200000e-14 89.8
14 TraesCS3B01G261900 chr2A 92.105 342 25 1 4162 4501 39975436 39975777 8.760000e-132 481.0
15 TraesCS3B01G261900 chr6D 91.254 343 18 4 4162 4499 332958966 332958631 1.480000e-124 457.0
16 TraesCS3B01G261900 chr5A 90.725 345 26 3 4162 4501 566626583 566626240 5.310000e-124 455.0
17 TraesCS3B01G261900 chr5A 85.380 171 21 4 4162 4331 658359683 658359516 1.660000e-39 174.0
18 TraesCS3B01G261900 chr7A 89.655 348 27 5 4162 4501 177314729 177314383 6.910000e-118 435.0
19 TraesCS3B01G261900 chr2B 87.786 131 11 4 4185 4313 669950185 669950058 1.010000e-31 148.0
20 TraesCS3B01G261900 chr2B 83.553 152 22 3 4162 4311 16256718 16256568 6.070000e-29 139.0
21 TraesCS3B01G261900 chrUn 82.727 110 17 2 4352 4460 30700929 30700821 3.710000e-16 97.1
22 TraesCS3B01G261900 chr6A 81.818 110 18 2 4352 4460 41670241 41670133 1.720000e-14 91.6
23 TraesCS3B01G261900 chr5D 80.342 117 20 3 4344 4460 534008759 534008872 8.020000e-13 86.1
24 TraesCS3B01G261900 chr7B 97.917 48 0 1 2118 2165 323828668 323828714 1.040000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G261900 chr3B 420035241 420039741 4500 True 8312.000000 8312 100.000000 1 4501 1 chr3B.!!$R1 4500
1 TraesCS3B01G261900 chr3D 301220871 301224902 4031 False 1688.333333 2525 89.502333 1 4160 3 chr3D.!!$F2 4159
2 TraesCS3B01G261900 chr3A 434126203 434131829 5626 True 846.000000 1546 90.045500 1 4155 6 chr3A.!!$R2 4154

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
838 857 0.108138 CCAAAGCTGCTAGGCGTACT 60.108 55.0 0.90 0.00 37.29 2.73 F
1017 1039 0.329261 CCATGGACAAGGAGGAGCAA 59.671 55.0 5.56 0.00 0.00 3.91 F
2009 2046 0.040425 AAGTGCGCACGGTCATTTTC 60.040 50.0 32.94 7.07 36.20 2.29 F
2287 2327 0.108756 GGTTAGTGCCCTCAGTCGAC 60.109 60.0 7.70 7.70 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1992 2029 0.040425 AAGAAAATGACCGTGCGCAC 60.040 50.0 30.42 30.42 0.0 5.34 R
2494 2562 0.179702 ATCACATGACCTCAGCGCAT 59.820 50.0 11.47 0.00 0.0 4.73 R
3281 3411 0.044702 AGACATCACCCCCATCCTGA 59.955 55.0 0.00 0.00 0.0 3.86 R
3832 3969 0.258774 AACACCTGGTCCAAGCAACT 59.741 50.0 0.00 0.00 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 83 3.244078 TGTGACAACTGTAGCTTGTAGGG 60.244 47.826 0.00 0.00 31.83 3.53
107 114 3.629398 GCCCATCATTTTGAACTCGATCT 59.371 43.478 0.00 0.00 0.00 2.75
121 128 2.680841 CTCGATCTCTCCGAGTTGACTT 59.319 50.000 0.00 0.00 45.89 3.01
334 350 1.008538 CTGCTTTTGGTGTGACCGC 60.009 57.895 0.00 0.00 42.58 5.68
381 397 1.905894 TGCACATCACACTTAGCCCTA 59.094 47.619 0.00 0.00 0.00 3.53
411 427 2.553602 CAAACTACTGCTTGCATCCACA 59.446 45.455 0.00 0.00 0.00 4.17
412 428 2.566833 ACTACTGCTTGCATCCACAA 57.433 45.000 0.00 0.00 0.00 3.33
559 575 1.686052 GATTGTTGCTGTTGGGTTCCA 59.314 47.619 0.00 0.00 0.00 3.53
560 576 1.110442 TTGTTGCTGTTGGGTTCCAG 58.890 50.000 0.00 0.00 33.81 3.86
563 579 0.817634 TTGCTGTTGGGTTCCAGTCG 60.818 55.000 0.00 0.00 33.81 4.18
565 581 1.450211 CTGTTGGGTTCCAGTCGGT 59.550 57.895 0.00 0.00 33.81 4.69
572 589 1.542492 GGTTCCAGTCGGTCAGAGTA 58.458 55.000 0.00 0.00 0.00 2.59
573 590 1.891150 GGTTCCAGTCGGTCAGAGTAA 59.109 52.381 0.00 0.00 0.00 2.24
621 638 5.762711 GCCAAATTTACAACCAAGGACAAAT 59.237 36.000 0.00 0.00 0.00 2.32
625 642 7.604657 AATTTACAACCAAGGACAAATACCA 57.395 32.000 0.00 0.00 0.00 3.25
626 643 6.642707 TTTACAACCAAGGACAAATACCAG 57.357 37.500 0.00 0.00 0.00 4.00
627 644 3.496331 ACAACCAAGGACAAATACCAGG 58.504 45.455 0.00 0.00 0.00 4.45
628 645 3.117284 ACAACCAAGGACAAATACCAGGT 60.117 43.478 0.00 0.00 38.86 4.00
653 670 1.287146 ACTCCCACCTACATCTACCGT 59.713 52.381 0.00 0.00 0.00 4.83
656 673 1.481871 CCACCTACATCTACCGTGGT 58.518 55.000 0.00 0.00 39.33 4.16
667 685 2.769652 TACCGTGGTAGCGTGGACCT 62.770 60.000 9.02 0.00 37.88 3.85
739 757 6.676237 TCAAGTTCCATTTTTCCTTTTTGC 57.324 33.333 0.00 0.00 0.00 3.68
740 758 5.293079 TCAAGTTCCATTTTTCCTTTTTGCG 59.707 36.000 0.00 0.00 0.00 4.85
741 759 4.765273 AGTTCCATTTTTCCTTTTTGCGT 58.235 34.783 0.00 0.00 0.00 5.24
742 760 4.570369 AGTTCCATTTTTCCTTTTTGCGTG 59.430 37.500 0.00 0.00 0.00 5.34
743 761 3.462021 TCCATTTTTCCTTTTTGCGTGG 58.538 40.909 0.00 0.00 0.00 4.94
744 762 3.118592 TCCATTTTTCCTTTTTGCGTGGT 60.119 39.130 0.00 0.00 0.00 4.16
745 763 4.099573 TCCATTTTTCCTTTTTGCGTGGTA 59.900 37.500 0.00 0.00 0.00 3.25
746 764 4.994217 CCATTTTTCCTTTTTGCGTGGTAT 59.006 37.500 0.00 0.00 0.00 2.73
747 765 6.015350 TCCATTTTTCCTTTTTGCGTGGTATA 60.015 34.615 0.00 0.00 0.00 1.47
748 766 6.090223 CCATTTTTCCTTTTTGCGTGGTATAC 59.910 38.462 0.00 0.00 0.00 1.47
793 811 2.362717 CGGGTTCAAGGGCTTTTAAACA 59.637 45.455 6.68 0.00 0.00 2.83
801 819 2.893489 AGGGCTTTTAAACAGAGCAAGG 59.107 45.455 11.45 0.00 38.14 3.61
802 820 2.890945 GGGCTTTTAAACAGAGCAAGGA 59.109 45.455 11.45 0.00 38.14 3.36
803 821 3.320826 GGGCTTTTAAACAGAGCAAGGAA 59.679 43.478 11.45 0.00 38.14 3.36
805 823 5.511373 GGGCTTTTAAACAGAGCAAGGAAAT 60.511 40.000 11.45 0.00 38.14 2.17
806 824 6.295067 GGGCTTTTAAACAGAGCAAGGAAATA 60.295 38.462 11.45 0.00 38.14 1.40
807 825 6.586463 GGCTTTTAAACAGAGCAAGGAAATAC 59.414 38.462 11.45 0.00 38.14 1.89
808 826 7.371159 GCTTTTAAACAGAGCAAGGAAATACT 58.629 34.615 5.65 0.00 36.45 2.12
809 827 7.327032 GCTTTTAAACAGAGCAAGGAAATACTG 59.673 37.037 5.65 0.00 36.45 2.74
810 828 4.773323 AAACAGAGCAAGGAAATACTGC 57.227 40.909 0.00 0.00 0.00 4.40
838 857 0.108138 CCAAAGCTGCTAGGCGTACT 60.108 55.000 0.90 0.00 37.29 2.73
876 895 2.587194 CTCCTGCGGATGAAGGCG 60.587 66.667 0.00 0.00 41.32 5.52
877 896 3.376935 CTCCTGCGGATGAAGGCGT 62.377 63.158 0.00 0.00 41.32 5.68
878 897 2.016393 CTCCTGCGGATGAAGGCGTA 62.016 60.000 0.00 0.00 41.32 4.42
879 898 1.883084 CCTGCGGATGAAGGCGTAC 60.883 63.158 0.00 0.00 32.77 3.67
880 899 2.202690 TGCGGATGAAGGCGTACG 60.203 61.111 11.84 11.84 40.39 3.67
882 901 3.320078 CGGATGAAGGCGTACGCG 61.320 66.667 31.78 13.24 43.06 6.01
923 944 6.680148 ATAAAACCCCTTGCACAGTAAAAT 57.320 33.333 0.00 0.00 0.00 1.82
948 970 3.201266 ACCTCCACTCCACAGTAAAAACA 59.799 43.478 0.00 0.00 0.00 2.83
959 981 2.093106 AGTAAAAACACACGCCCACAA 58.907 42.857 0.00 0.00 0.00 3.33
977 999 4.039092 GCAAGCAGAGGCCCCAGA 62.039 66.667 0.00 0.00 42.56 3.86
991 1013 0.391130 CCCAGAACCGATCGAAGCAA 60.391 55.000 18.66 0.00 0.00 3.91
1017 1039 0.329261 CCATGGACAAGGAGGAGCAA 59.671 55.000 5.56 0.00 0.00 3.91
1022 1044 1.625818 GGACAAGGAGGAGCAAGAAGA 59.374 52.381 0.00 0.00 0.00 2.87
1150 1172 3.121030 CCGACTCGCTGGCCTTTG 61.121 66.667 3.32 0.00 0.00 2.77
1401 1423 2.512515 GGCGAGGTGCTGATGACC 60.513 66.667 0.00 0.00 45.43 4.02
1403 1425 1.375908 GCGAGGTGCTGATGACCAA 60.376 57.895 0.00 0.00 41.73 3.67
1530 1552 3.387947 GAGGAGTTCGCCGGGGAA 61.388 66.667 28.37 28.37 0.00 3.97
1576 1598 3.790437 CCGGCATGGAGGTGAGCT 61.790 66.667 0.00 0.00 42.00 4.09
1654 1687 2.349590 TCCACAATCACAATGAGCTCG 58.650 47.619 9.64 0.00 0.00 5.03
1670 1703 3.443054 GCTCGTGCTCTATCTACGTAG 57.557 52.381 16.73 16.73 38.80 3.51
1671 1704 2.411806 GCTCGTGCTCTATCTACGTAGC 60.412 54.545 18.00 8.29 38.80 3.58
1672 1705 1.791204 TCGTGCTCTATCTACGTAGCG 59.209 52.381 18.00 12.38 37.80 4.26
1679 1712 5.930569 TGCTCTATCTACGTAGCGAAGATTA 59.069 40.000 18.00 8.61 37.80 1.75
1722 1755 4.391523 TGTTTTCTTGCTGCCTTTTGTTTC 59.608 37.500 0.00 0.00 0.00 2.78
1750 1783 7.197071 TCTGTTGTAGTTCGTGCAATTATTT 57.803 32.000 0.00 0.00 32.88 1.40
1821 1854 2.807108 CGGTGCCTAGCCTATTTTCTCC 60.807 54.545 0.00 0.00 0.00 3.71
1822 1855 2.484889 GTGCCTAGCCTATTTTCTCCG 58.515 52.381 0.00 0.00 0.00 4.63
1827 1860 3.132289 CCTAGCCTATTTTCTCCGTGTCA 59.868 47.826 0.00 0.00 0.00 3.58
1829 1862 1.659098 GCCTATTTTCTCCGTGTCACG 59.341 52.381 18.54 18.54 42.11 4.35
1915 1948 3.827722 TGATCCGTTTTGTTTCCCTTCT 58.172 40.909 0.00 0.00 0.00 2.85
1949 1986 1.720694 ATTTATGCCCGCCCGTTTCG 61.721 55.000 0.00 0.00 0.00 3.46
1950 1987 3.608993 TTATGCCCGCCCGTTTCGT 62.609 57.895 0.00 0.00 0.00 3.85
1954 1991 4.065281 CCCGCCCGTTTCGTCTCT 62.065 66.667 0.00 0.00 0.00 3.10
1955 1992 2.506438 CCGCCCGTTTCGTCTCTC 60.506 66.667 0.00 0.00 0.00 3.20
1956 1993 2.874780 CGCCCGTTTCGTCTCTCG 60.875 66.667 0.00 0.00 41.41 4.04
1957 1994 3.179939 GCCCGTTTCGTCTCTCGC 61.180 66.667 0.00 0.00 39.67 5.03
1958 1995 2.506438 CCCGTTTCGTCTCTCGCC 60.506 66.667 0.00 0.00 39.67 5.54
1959 1996 2.874780 CCGTTTCGTCTCTCGCCG 60.875 66.667 0.00 0.00 39.67 6.46
1960 1997 2.126965 CGTTTCGTCTCTCGCCGT 60.127 61.111 0.00 0.00 39.67 5.68
1961 1998 1.728426 CGTTTCGTCTCTCGCCGTT 60.728 57.895 0.00 0.00 39.67 4.44
1962 1999 1.773496 GTTTCGTCTCTCGCCGTTG 59.227 57.895 0.00 0.00 39.67 4.10
1963 2000 1.372499 TTTCGTCTCTCGCCGTTGG 60.372 57.895 0.00 0.00 39.67 3.77
1964 2001 1.798234 TTTCGTCTCTCGCCGTTGGA 61.798 55.000 0.00 0.00 39.67 3.53
1965 2002 2.196382 TTCGTCTCTCGCCGTTGGAG 62.196 60.000 0.00 0.00 39.67 3.86
1966 2003 2.507324 GTCTCTCGCCGTTGGAGC 60.507 66.667 0.00 0.00 0.00 4.70
1974 2011 2.956964 CCGTTGGAGCGAGCGATC 60.957 66.667 0.00 0.00 0.00 3.69
1992 2029 4.815553 CGATCATTCACGCTGAAACTAAG 58.184 43.478 4.87 0.00 40.12 2.18
1993 2030 4.327357 CGATCATTCACGCTGAAACTAAGT 59.673 41.667 4.87 0.00 40.12 2.24
1994 2031 4.990543 TCATTCACGCTGAAACTAAGTG 57.009 40.909 4.87 0.00 40.12 3.16
1995 2032 3.186409 TCATTCACGCTGAAACTAAGTGC 59.814 43.478 4.87 0.00 40.12 4.40
1997 2034 4.725758 CGCTGAAACTAAGTGCGC 57.274 55.556 0.00 0.00 40.15 6.09
1998 2035 1.859398 CGCTGAAACTAAGTGCGCA 59.141 52.632 5.66 5.66 40.15 6.09
1999 2036 0.451135 CGCTGAAACTAAGTGCGCAC 60.451 55.000 32.79 32.79 40.15 5.34
2000 2037 0.451135 GCTGAAACTAAGTGCGCACG 60.451 55.000 32.94 22.01 36.20 5.34
2001 2038 0.163788 CTGAAACTAAGTGCGCACGG 59.836 55.000 32.94 26.89 36.20 4.94
2002 2039 0.531090 TGAAACTAAGTGCGCACGGT 60.531 50.000 32.94 27.50 36.20 4.83
2004 2041 0.531090 AAACTAAGTGCGCACGGTCA 60.531 50.000 32.94 18.48 36.20 4.02
2006 2043 0.320421 ACTAAGTGCGCACGGTCATT 60.320 50.000 32.94 23.38 36.20 2.57
2007 2044 0.796312 CTAAGTGCGCACGGTCATTT 59.204 50.000 32.94 22.69 36.20 2.32
2008 2045 1.196808 CTAAGTGCGCACGGTCATTTT 59.803 47.619 32.94 22.00 36.20 1.82
2009 2046 0.040425 AAGTGCGCACGGTCATTTTC 60.040 50.000 32.94 7.07 36.20 2.29
2011 2048 0.040425 GTGCGCACGGTCATTTTCTT 60.040 50.000 26.77 0.00 0.00 2.52
2044 2084 0.111061 TGTGCTGCCAAAGGAGATGT 59.889 50.000 0.00 0.00 0.00 3.06
2272 2312 8.592809 ACATCAAATCAGGCAAAATTAAGGTTA 58.407 29.630 0.00 0.00 0.00 2.85
2275 2315 8.087750 TCAAATCAGGCAAAATTAAGGTTAGTG 58.912 33.333 0.00 0.00 0.00 2.74
2276 2316 5.385509 TCAGGCAAAATTAAGGTTAGTGC 57.614 39.130 0.00 0.00 0.00 4.40
2278 2318 3.857052 GGCAAAATTAAGGTTAGTGCCC 58.143 45.455 0.20 0.00 43.41 5.36
2279 2319 3.513912 GGCAAAATTAAGGTTAGTGCCCT 59.486 43.478 0.20 0.00 43.41 5.19
2280 2320 4.381612 GGCAAAATTAAGGTTAGTGCCCTC 60.382 45.833 0.20 0.00 43.41 4.30
2281 2321 4.219725 GCAAAATTAAGGTTAGTGCCCTCA 59.780 41.667 0.00 0.00 0.00 3.86
2282 2322 5.622233 GCAAAATTAAGGTTAGTGCCCTCAG 60.622 44.000 0.00 0.00 0.00 3.35
2283 2323 4.929146 AATTAAGGTTAGTGCCCTCAGT 57.071 40.909 0.00 0.00 0.00 3.41
2284 2324 3.975168 TTAAGGTTAGTGCCCTCAGTC 57.025 47.619 0.00 0.00 0.00 3.51
2285 2325 0.608640 AAGGTTAGTGCCCTCAGTCG 59.391 55.000 0.00 0.00 0.00 4.18
2286 2326 0.251653 AGGTTAGTGCCCTCAGTCGA 60.252 55.000 0.00 0.00 0.00 4.20
2287 2327 0.108756 GGTTAGTGCCCTCAGTCGAC 60.109 60.000 7.70 7.70 0.00 4.20
2288 2328 0.889306 GTTAGTGCCCTCAGTCGACT 59.111 55.000 13.58 13.58 0.00 4.18
2289 2329 2.089980 GTTAGTGCCCTCAGTCGACTA 58.910 52.381 19.57 6.17 0.00 2.59
2290 2330 2.039818 TAGTGCCCTCAGTCGACTAG 57.960 55.000 19.57 15.08 0.00 2.57
2291 2331 1.139947 GTGCCCTCAGTCGACTAGC 59.860 63.158 19.57 18.21 0.00 3.42
2292 2332 2.052690 TGCCCTCAGTCGACTAGCC 61.053 63.158 19.57 5.89 0.00 3.93
2293 2333 1.755008 GCCCTCAGTCGACTAGCCT 60.755 63.158 19.57 0.00 0.00 4.58
2294 2334 1.324005 GCCCTCAGTCGACTAGCCTT 61.324 60.000 19.57 0.00 0.00 4.35
2302 2342 0.242825 TCGACTAGCCTTGTTCCACG 59.757 55.000 0.00 0.00 0.00 4.94
2305 2345 2.762745 GACTAGCCTTGTTCCACGAAA 58.237 47.619 0.00 0.00 0.00 3.46
2308 2348 2.341846 AGCCTTGTTCCACGAAAGAA 57.658 45.000 0.00 0.00 0.00 2.52
2314 2354 6.657541 AGCCTTGTTCCACGAAAGAATAATTA 59.342 34.615 0.00 0.00 0.00 1.40
2340 2380 1.258720 GGCGTAAACTGTCGAAACGTT 59.741 47.619 0.00 0.00 36.03 3.99
2341 2381 2.470999 GGCGTAAACTGTCGAAACGTTA 59.529 45.455 0.00 0.00 36.03 3.18
2342 2382 3.420927 GGCGTAAACTGTCGAAACGTTAG 60.421 47.826 0.00 0.00 36.03 2.34
2343 2383 3.704008 CGTAAACTGTCGAAACGTTAGC 58.296 45.455 0.00 0.00 0.00 3.09
2344 2384 3.420927 CGTAAACTGTCGAAACGTTAGCC 60.421 47.826 0.00 0.00 0.00 3.93
2345 2385 1.134226 AACTGTCGAAACGTTAGCCG 58.866 50.000 0.00 6.27 44.03 5.52
2411 2451 1.888512 GGCCTTGAATGAAAGCTCACA 59.111 47.619 0.00 0.00 33.30 3.58
2440 2486 1.865865 TTTCTTCTCTGTCGCCACAC 58.134 50.000 0.00 0.00 0.00 3.82
2459 2520 2.110835 ACCACAGCACATGCACGA 59.889 55.556 6.64 0.00 45.16 4.35
2494 2562 4.081365 TCTGCCGATTTCCTTGTGTATGTA 60.081 41.667 0.00 0.00 0.00 2.29
2550 2621 1.079750 GTGAAGGAGGTGACGAGGC 60.080 63.158 0.00 0.00 0.00 4.70
2721 2801 0.950555 TTGGTCTGCACAGCTTAGCG 60.951 55.000 0.00 0.00 0.00 4.26
2722 2802 2.744768 GGTCTGCACAGCTTAGCGC 61.745 63.158 0.00 0.00 39.57 5.92
2897 2986 0.685097 CCTTTCTCCCGAACTGTCCA 59.315 55.000 0.00 0.00 0.00 4.02
3143 3273 5.552870 ACTTGGTTGAGTCTGACATACTT 57.447 39.130 10.88 0.00 0.00 2.24
3144 3274 6.665992 ACTTGGTTGAGTCTGACATACTTA 57.334 37.500 10.88 0.00 0.00 2.24
3145 3275 6.456501 ACTTGGTTGAGTCTGACATACTTAC 58.543 40.000 10.88 0.00 0.00 2.34
3146 3276 6.041637 ACTTGGTTGAGTCTGACATACTTACA 59.958 38.462 10.88 0.00 0.00 2.41
3147 3277 6.025749 TGGTTGAGTCTGACATACTTACAG 57.974 41.667 10.88 0.00 0.00 2.74
3148 3278 5.538813 TGGTTGAGTCTGACATACTTACAGT 59.461 40.000 10.88 0.00 33.93 3.55
3149 3279 6.717997 TGGTTGAGTCTGACATACTTACAGTA 59.282 38.462 10.88 0.00 34.82 2.74
3166 3296 9.901172 ACTTACAGTAGATTTTACCCCATTAAG 57.099 33.333 0.00 0.00 0.00 1.85
3171 3301 6.935208 AGTAGATTTTACCCCATTAAGATCGC 59.065 38.462 0.00 0.00 31.08 4.58
3173 3303 7.074653 AGATTTTACCCCATTAAGATCGCTA 57.925 36.000 0.00 0.00 31.08 4.26
3174 3304 7.162082 AGATTTTACCCCATTAAGATCGCTAG 58.838 38.462 0.00 0.00 31.08 3.42
3175 3305 6.488769 TTTTACCCCATTAAGATCGCTAGA 57.511 37.500 0.00 0.00 0.00 2.43
3176 3306 5.723672 TTACCCCATTAAGATCGCTAGAG 57.276 43.478 0.00 0.00 0.00 2.43
3177 3307 2.300437 ACCCCATTAAGATCGCTAGAGC 59.700 50.000 0.00 0.00 37.78 4.09
3178 3308 2.354203 CCCCATTAAGATCGCTAGAGCC 60.354 54.545 0.00 0.00 37.91 4.70
3179 3309 2.564947 CCCATTAAGATCGCTAGAGCCT 59.435 50.000 0.00 0.00 37.91 4.58
3180 3310 3.764434 CCCATTAAGATCGCTAGAGCCTA 59.236 47.826 0.00 0.00 37.91 3.93
3181 3311 4.220821 CCCATTAAGATCGCTAGAGCCTAA 59.779 45.833 0.00 0.00 37.91 2.69
3182 3312 5.406649 CCATTAAGATCGCTAGAGCCTAAG 58.593 45.833 0.00 0.00 37.91 2.18
3183 3313 4.506886 TTAAGATCGCTAGAGCCTAAGC 57.493 45.455 0.00 0.00 37.91 3.09
3236 3366 4.069304 TGTAACTGTATGCGCTCCTTTTT 58.931 39.130 9.73 0.00 0.00 1.94
3281 3411 4.339247 CCATGGCTGATCGTTCCTAATTTT 59.661 41.667 0.00 0.00 0.00 1.82
3290 3420 4.523083 TCGTTCCTAATTTTCAGGATGGG 58.477 43.478 0.00 0.00 41.81 4.00
3293 3423 3.206464 TCCTAATTTTCAGGATGGGGGT 58.794 45.455 0.00 0.00 37.27 4.95
3359 3489 2.281900 TGGAAAGGGCGAAACGGG 60.282 61.111 0.00 0.00 0.00 5.28
3404 3534 1.306141 AGGGCTCCTCGGAACATCA 60.306 57.895 0.00 0.00 0.00 3.07
3420 3550 1.051008 ATCATCAGACGCCCTATGCA 58.949 50.000 0.00 0.00 41.33 3.96
3435 3565 4.282957 CCCTATGCATCGCCAGAGATATAT 59.717 45.833 0.19 0.00 0.00 0.86
3438 3568 7.034397 CCTATGCATCGCCAGAGATATATATG 58.966 42.308 0.19 0.00 0.00 1.78
3465 3595 4.625607 TGGAGGGAAAGAGAAAGAGAAC 57.374 45.455 0.00 0.00 0.00 3.01
3466 3596 3.006967 TGGAGGGAAAGAGAAAGAGAACG 59.993 47.826 0.00 0.00 0.00 3.95
3467 3597 3.258622 GGAGGGAAAGAGAAAGAGAACGA 59.741 47.826 0.00 0.00 0.00 3.85
3468 3598 4.490743 GAGGGAAAGAGAAAGAGAACGAG 58.509 47.826 0.00 0.00 0.00 4.18
3469 3599 4.153411 AGGGAAAGAGAAAGAGAACGAGA 58.847 43.478 0.00 0.00 0.00 4.04
3470 3600 4.589374 AGGGAAAGAGAAAGAGAACGAGAA 59.411 41.667 0.00 0.00 0.00 2.87
3489 3619 5.394224 CGAGAAAGAGATAAACCCACTAGCA 60.394 44.000 0.00 0.00 0.00 3.49
3527 3657 6.647229 TGATAGCTCTGTTTGATTCTCATGT 58.353 36.000 0.00 0.00 0.00 3.21
3543 3673 4.152223 TCTCATGTGAATGTACAGCGTTTG 59.848 41.667 0.33 0.00 33.44 2.93
3568 3698 7.880713 TGAGTAGGAGTTTTGTGCATATAACAA 59.119 33.333 16.60 1.45 35.78 2.83
3570 3700 6.267496 AGGAGTTTTGTGCATATAACAACC 57.733 37.500 16.60 17.00 37.26 3.77
3588 3722 2.259818 CGTCTCTTGCCTGTCGCT 59.740 61.111 0.00 0.00 38.78 4.93
3652 3786 4.201990 GGAGTAGAACGGTGGTATGTGTAG 60.202 50.000 0.00 0.00 0.00 2.74
3663 3797 2.034305 GGTATGTGTAGCGTGTCCCTAG 59.966 54.545 0.00 0.00 0.00 3.02
3684 3818 1.790387 CACGTAAGCCAGCTTCTGC 59.210 57.895 8.43 0.24 45.62 4.26
3686 3820 1.375908 CGTAAGCCAGCTTCTGCCA 60.376 57.895 8.43 0.00 40.80 4.92
3688 3822 0.036010 GTAAGCCAGCTTCTGCCAGA 60.036 55.000 8.43 0.00 40.80 3.86
3693 3829 1.613836 CCAGCTTCTGCCAGAGTTTT 58.386 50.000 0.00 0.00 40.80 2.43
3748 3884 7.656707 TTTTTGAGAAATAATTGCCAAGAGC 57.343 32.000 0.00 0.00 44.14 4.09
3754 3890 5.294552 AGAAATAATTGCCAAGAGCTACGAC 59.705 40.000 0.00 0.00 44.23 4.34
3820 3957 1.105759 GCCCATGAATCCAGCCTGAC 61.106 60.000 0.00 0.00 0.00 3.51
3869 4006 2.156098 GTTGTTAGCCCAATTCGGTGA 58.844 47.619 0.00 0.00 0.00 4.02
3871 4008 1.626321 TGTTAGCCCAATTCGGTGAGA 59.374 47.619 0.00 0.00 0.00 3.27
3891 4029 1.172175 GAGAAAGGCTGGGCTGAAAG 58.828 55.000 0.00 0.00 0.00 2.62
3896 4034 3.984732 GCTGGGCTGAAAGGGGGT 61.985 66.667 0.00 0.00 0.00 4.95
3952 4090 4.481368 TGCTACGACCTTTCCAATACAT 57.519 40.909 0.00 0.00 0.00 2.29
3971 4109 5.712152 ACATAGCAGTTTTTCCCTTCTTG 57.288 39.130 0.00 0.00 0.00 3.02
3973 4111 6.303839 ACATAGCAGTTTTTCCCTTCTTGTA 58.696 36.000 0.00 0.00 0.00 2.41
3974 4112 6.775629 ACATAGCAGTTTTTCCCTTCTTGTAA 59.224 34.615 0.00 0.00 0.00 2.41
4033 5762 6.127253 GCACTATAGGGTAGTACAAGTCCAAA 60.127 42.308 3.43 0.00 0.00 3.28
4138 5871 6.385033 ACAAAAGCTTCATCTTGCATAGTTC 58.615 36.000 0.00 0.00 0.00 3.01
4160 5893 3.253230 GCAAATCAAAATGGGGACGAAG 58.747 45.455 0.00 0.00 0.00 3.79
4161 5894 3.848726 CAAATCAAAATGGGGACGAAGG 58.151 45.455 0.00 0.00 0.00 3.46
4162 5895 1.474330 ATCAAAATGGGGACGAAGGC 58.526 50.000 0.00 0.00 0.00 4.35
4163 5896 0.610785 TCAAAATGGGGACGAAGGCC 60.611 55.000 0.00 0.00 0.00 5.19
4164 5897 1.304962 AAAATGGGGACGAAGGCCC 60.305 57.895 1.36 1.36 45.25 5.80
4165 5898 1.800229 AAAATGGGGACGAAGGCCCT 61.800 55.000 11.26 0.00 45.30 5.19
4166 5899 2.211468 AAATGGGGACGAAGGCCCTC 62.211 60.000 11.26 0.00 45.30 4.30
4169 5902 3.471806 GGGACGAAGGCCCTCCTC 61.472 72.222 3.13 0.00 43.40 3.71
4170 5903 2.364448 GGACGAAGGCCCTCCTCT 60.364 66.667 0.00 0.00 43.40 3.69
4171 5904 2.726351 GGACGAAGGCCCTCCTCTG 61.726 68.421 0.00 0.00 43.40 3.35
4172 5905 2.685380 ACGAAGGCCCTCCTCTGG 60.685 66.667 0.00 0.00 43.40 3.86
4178 5911 4.459089 GCCCTCCTCTGGCGACAC 62.459 72.222 0.00 0.00 39.48 3.67
4179 5912 4.135153 CCCTCCTCTGGCGACACG 62.135 72.222 0.00 0.00 35.60 4.49
4180 5913 4.135153 CCTCCTCTGGCGACACGG 62.135 72.222 0.00 0.00 35.60 4.94
4181 5914 4.135153 CTCCTCTGGCGACACGGG 62.135 72.222 0.00 0.00 35.60 5.28
4186 5919 4.323477 CTGGCGACACGGGGGAAA 62.323 66.667 0.00 0.00 35.60 3.13
4187 5920 4.629523 TGGCGACACGGGGGAAAC 62.630 66.667 0.00 0.00 33.40 2.78
4217 5950 2.757077 CGCAAGGAAACCCTCCCT 59.243 61.111 0.00 0.00 46.81 4.20
4218 5951 1.377333 CGCAAGGAAACCCTCCCTC 60.377 63.158 0.00 0.00 46.81 4.30
4219 5952 1.000771 GCAAGGAAACCCTCCCTCC 60.001 63.158 0.00 0.00 46.81 4.30
4220 5953 1.299976 CAAGGAAACCCTCCCTCCG 59.700 63.158 0.00 0.00 46.81 4.63
4221 5954 2.603652 AAGGAAACCCTCCCTCCGC 61.604 63.158 0.00 0.00 46.81 5.54
4222 5955 4.111053 GGAAACCCTCCCTCCGCC 62.111 72.222 0.00 0.00 38.44 6.13
4223 5956 3.009714 GAAACCCTCCCTCCGCCT 61.010 66.667 0.00 0.00 0.00 5.52
4224 5957 1.688187 GAAACCCTCCCTCCGCCTA 60.688 63.158 0.00 0.00 0.00 3.93
4225 5958 1.969200 GAAACCCTCCCTCCGCCTAC 61.969 65.000 0.00 0.00 0.00 3.18
4226 5959 2.472607 AAACCCTCCCTCCGCCTACT 62.473 60.000 0.00 0.00 0.00 2.57
4227 5960 2.522193 CCCTCCCTCCGCCTACTC 60.522 72.222 0.00 0.00 0.00 2.59
4228 5961 2.522193 CCTCCCTCCGCCTACTCC 60.522 72.222 0.00 0.00 0.00 3.85
4229 5962 2.522193 CTCCCTCCGCCTACTCCC 60.522 72.222 0.00 0.00 0.00 4.30
4230 5963 4.517934 TCCCTCCGCCTACTCCCG 62.518 72.222 0.00 0.00 0.00 5.14
4233 5966 3.905678 CTCCGCCTACTCCCGCTG 61.906 72.222 0.00 0.00 0.00 5.18
4295 6028 4.796495 GGATGGTGGCGGTGGGAC 62.796 72.222 0.00 0.00 0.00 4.46
4305 6038 4.383861 GGTGGGACGGGTCGGTTC 62.384 72.222 0.00 0.00 0.00 3.62
4306 6039 4.383861 GTGGGACGGGTCGGTTCC 62.384 72.222 0.00 0.00 0.00 3.62
4310 6043 3.767806 GACGGGTCGGTTCCCCTC 61.768 72.222 5.85 1.62 44.32 4.30
4339 6072 4.614036 CCCCACCCCACCCACAAC 62.614 72.222 0.00 0.00 0.00 3.32
4340 6073 4.614036 CCCACCCCACCCACAACC 62.614 72.222 0.00 0.00 0.00 3.77
4341 6074 3.507713 CCACCCCACCCACAACCT 61.508 66.667 0.00 0.00 0.00 3.50
4342 6075 2.115266 CACCCCACCCACAACCTC 59.885 66.667 0.00 0.00 0.00 3.85
4343 6076 3.566210 ACCCCACCCACAACCTCG 61.566 66.667 0.00 0.00 0.00 4.63
4344 6077 3.246112 CCCCACCCACAACCTCGA 61.246 66.667 0.00 0.00 0.00 4.04
4345 6078 2.347490 CCCACCCACAACCTCGAG 59.653 66.667 5.13 5.13 0.00 4.04
4346 6079 2.214216 CCCACCCACAACCTCGAGA 61.214 63.158 15.71 0.00 0.00 4.04
4347 6080 1.553690 CCCACCCACAACCTCGAGAT 61.554 60.000 15.71 0.00 0.00 2.75
4348 6081 0.108138 CCACCCACAACCTCGAGATC 60.108 60.000 15.71 0.00 0.00 2.75
4349 6082 0.108138 CACCCACAACCTCGAGATCC 60.108 60.000 15.71 0.00 0.00 3.36
4350 6083 0.544357 ACCCACAACCTCGAGATCCA 60.544 55.000 15.71 0.00 0.00 3.41
4351 6084 0.108138 CCCACAACCTCGAGATCCAC 60.108 60.000 15.71 0.00 0.00 4.02
4352 6085 0.108138 CCACAACCTCGAGATCCACC 60.108 60.000 15.71 0.00 0.00 4.61
4353 6086 0.608130 CACAACCTCGAGATCCACCA 59.392 55.000 15.71 0.00 0.00 4.17
4354 6087 0.898320 ACAACCTCGAGATCCACCAG 59.102 55.000 15.71 0.00 0.00 4.00
4355 6088 0.460987 CAACCTCGAGATCCACCAGC 60.461 60.000 15.71 0.00 0.00 4.85
4356 6089 1.617947 AACCTCGAGATCCACCAGCC 61.618 60.000 15.71 0.00 0.00 4.85
4357 6090 2.415010 CTCGAGATCCACCAGCCG 59.585 66.667 6.58 0.00 0.00 5.52
4358 6091 2.362503 TCGAGATCCACCAGCCGT 60.363 61.111 0.00 0.00 0.00 5.68
4359 6092 2.105128 CGAGATCCACCAGCCGTC 59.895 66.667 0.00 0.00 0.00 4.79
4360 6093 2.105128 GAGATCCACCAGCCGTCG 59.895 66.667 0.00 0.00 0.00 5.12
4361 6094 4.148825 AGATCCACCAGCCGTCGC 62.149 66.667 0.00 0.00 0.00 5.19
4384 6117 3.403558 GGAAGCTCCCCCTTCGCT 61.404 66.667 0.00 0.00 41.63 4.93
4385 6118 2.188207 GAAGCTCCCCCTTCGCTC 59.812 66.667 0.00 0.00 32.72 5.03
4386 6119 3.724914 GAAGCTCCCCCTTCGCTCG 62.725 68.421 0.00 0.00 32.72 5.03
4474 6207 3.156334 CGGTTTTCGCCTCTCACG 58.844 61.111 0.00 0.00 0.00 4.35
4475 6208 2.861006 GGTTTTCGCCTCTCACGC 59.139 61.111 0.00 0.00 0.00 5.34
4476 6209 1.668151 GGTTTTCGCCTCTCACGCT 60.668 57.895 0.00 0.00 0.00 5.07
4477 6210 1.228657 GGTTTTCGCCTCTCACGCTT 61.229 55.000 0.00 0.00 0.00 4.68
4478 6211 0.164002 GTTTTCGCCTCTCACGCTTC 59.836 55.000 0.00 0.00 0.00 3.86
4479 6212 0.949105 TTTTCGCCTCTCACGCTTCC 60.949 55.000 0.00 0.00 0.00 3.46
4480 6213 2.781595 TTTCGCCTCTCACGCTTCCC 62.782 60.000 0.00 0.00 0.00 3.97
4481 6214 4.821589 CGCCTCTCACGCTTCCCC 62.822 72.222 0.00 0.00 0.00 4.81
4482 6215 4.475135 GCCTCTCACGCTTCCCCC 62.475 72.222 0.00 0.00 0.00 5.40
4483 6216 2.685380 CCTCTCACGCTTCCCCCT 60.685 66.667 0.00 0.00 0.00 4.79
4484 6217 1.381327 CCTCTCACGCTTCCCCCTA 60.381 63.158 0.00 0.00 0.00 3.53
4485 6218 1.677637 CCTCTCACGCTTCCCCCTAC 61.678 65.000 0.00 0.00 0.00 3.18
4486 6219 1.677637 CTCTCACGCTTCCCCCTACC 61.678 65.000 0.00 0.00 0.00 3.18
4487 6220 2.686106 TCACGCTTCCCCCTACCC 60.686 66.667 0.00 0.00 0.00 3.69
4488 6221 3.793888 CACGCTTCCCCCTACCCC 61.794 72.222 0.00 0.00 0.00 4.95
4492 6225 2.772622 CTTCCCCCTACCCCGCAT 60.773 66.667 0.00 0.00 0.00 4.73
4493 6226 2.770904 TTCCCCCTACCCCGCATC 60.771 66.667 0.00 0.00 0.00 3.91
4494 6227 4.892291 TCCCCCTACCCCGCATCC 62.892 72.222 0.00 0.00 0.00 3.51
4499 6232 2.923035 CTACCCCGCATCCCCGAT 60.923 66.667 0.00 0.00 0.00 4.18
4500 6233 2.446994 TACCCCGCATCCCCGATT 60.447 61.111 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 83 1.069049 CAAAATGATGGGCGGGAATCC 59.931 52.381 0.00 0.00 0.00 3.01
107 114 2.295349 GTGGTACAAGTCAACTCGGAGA 59.705 50.000 12.86 0.00 44.16 3.71
121 128 1.502690 AGTTGTGGACTGGTGGTACA 58.497 50.000 0.00 0.00 37.17 2.90
163 172 2.311542 TGGTAGTCCAATGGCCAAAGAT 59.688 45.455 10.96 0.00 41.25 2.40
334 350 0.323178 AGTGGCAGAGCAATTCCAGG 60.323 55.000 0.00 0.00 0.00 4.45
381 397 1.276421 AGCAGTAGTTTGGACAGCGAT 59.724 47.619 0.00 0.00 0.00 4.58
559 575 2.159366 CGCAAGATTACTCTGACCGACT 60.159 50.000 0.00 0.00 43.02 4.18
560 576 2.186076 CGCAAGATTACTCTGACCGAC 58.814 52.381 0.00 0.00 43.02 4.79
563 579 7.277098 TGTTAATAACGCAAGATTACTCTGACC 59.723 37.037 0.00 0.00 43.62 4.02
565 581 8.248253 TCTGTTAATAACGCAAGATTACTCTGA 58.752 33.333 0.00 0.00 43.62 3.27
572 589 7.624344 GCTTGTCTCTGTTAATAACGCAAGATT 60.624 37.037 18.46 0.00 43.62 2.40
573 590 6.183360 GCTTGTCTCTGTTAATAACGCAAGAT 60.183 38.462 18.46 0.00 43.62 2.40
628 645 3.484953 AGATGTAGGTGGGAGTTACCA 57.515 47.619 0.00 0.00 40.74 3.25
634 651 1.681793 CACGGTAGATGTAGGTGGGAG 59.318 57.143 0.00 0.00 0.00 4.30
653 670 1.002257 TACGAGGTCCACGCTACCA 60.002 57.895 8.77 0.00 39.64 3.25
656 673 3.489731 CGTACGAGGTCCACGCTA 58.510 61.111 10.44 0.00 0.00 4.26
759 777 2.299521 TGAACCCGAACGTGGATTTTT 58.700 42.857 0.00 0.00 0.00 1.94
760 778 1.970092 TGAACCCGAACGTGGATTTT 58.030 45.000 0.00 0.00 0.00 1.82
761 779 1.877443 CTTGAACCCGAACGTGGATTT 59.123 47.619 0.00 0.00 0.00 2.17
762 780 1.519408 CTTGAACCCGAACGTGGATT 58.481 50.000 0.00 0.00 0.00 3.01
763 781 0.321298 CCTTGAACCCGAACGTGGAT 60.321 55.000 0.00 0.00 0.00 3.41
764 782 1.070105 CCTTGAACCCGAACGTGGA 59.930 57.895 0.00 0.00 0.00 4.02
765 783 1.964373 CCCTTGAACCCGAACGTGG 60.964 63.158 0.00 0.00 0.00 4.94
766 784 2.613506 GCCCTTGAACCCGAACGTG 61.614 63.158 0.00 0.00 0.00 4.49
767 785 2.281276 GCCCTTGAACCCGAACGT 60.281 61.111 0.00 0.00 0.00 3.99
793 811 2.028112 TCGTGCAGTATTTCCTTGCTCT 60.028 45.455 0.00 0.00 38.60 4.09
801 819 2.346803 TGGAAGCTCGTGCAGTATTTC 58.653 47.619 12.58 6.09 42.74 2.17
802 820 2.472695 TGGAAGCTCGTGCAGTATTT 57.527 45.000 12.58 0.00 42.74 1.40
803 821 2.472695 TTGGAAGCTCGTGCAGTATT 57.527 45.000 12.58 0.00 42.74 1.89
805 823 1.795768 CTTTGGAAGCTCGTGCAGTA 58.204 50.000 12.58 0.00 42.74 2.74
806 824 2.621763 CTTTGGAAGCTCGTGCAGT 58.378 52.632 12.58 0.00 42.74 4.40
876 895 1.742510 TTTTGGCTAGGGCGCGTAC 60.743 57.895 8.43 0.21 39.81 3.67
877 896 1.742510 GTTTTGGCTAGGGCGCGTA 60.743 57.895 8.43 0.00 39.81 4.42
878 897 3.053896 GTTTTGGCTAGGGCGCGT 61.054 61.111 8.43 0.00 39.81 6.01
879 898 3.810896 GGTTTTGGCTAGGGCGCG 61.811 66.667 0.00 0.00 39.81 6.86
880 899 3.449227 GGGTTTTGGCTAGGGCGC 61.449 66.667 0.00 0.00 39.81 6.53
881 900 1.917336 TAGGGGTTTTGGCTAGGGCG 61.917 60.000 0.00 0.00 39.81 6.13
882 901 0.556258 ATAGGGGTTTTGGCTAGGGC 59.444 55.000 0.00 0.00 37.82 5.19
883 902 4.529716 TTTATAGGGGTTTTGGCTAGGG 57.470 45.455 0.00 0.00 0.00 3.53
887 906 3.446968 GGGTTTTATAGGGGTTTTGGCT 58.553 45.455 0.00 0.00 0.00 4.75
923 944 2.984435 TACTGTGGAGTGGAGGTGTA 57.016 50.000 0.00 0.00 33.21 2.90
948 970 3.595758 GCTTGCTTGTGGGCGTGT 61.596 61.111 0.00 0.00 34.52 4.49
959 981 4.044439 CTGGGGCCTCTGCTTGCT 62.044 66.667 3.07 0.00 37.74 3.91
977 999 0.034896 ACTGGTTGCTTCGATCGGTT 59.965 50.000 16.41 0.00 0.00 4.44
991 1013 1.075482 CCTTGTCCATGGCACTGGT 59.925 57.895 6.96 0.00 37.57 4.00
1401 1423 3.357079 GCCACGACCAGCCACTTG 61.357 66.667 0.00 0.00 0.00 3.16
1530 1552 1.075600 CCCCACCACCAACACCTTT 60.076 57.895 0.00 0.00 0.00 3.11
1576 1598 1.590665 CATGCCGGCACAAATCCAA 59.409 52.632 35.50 5.26 0.00 3.53
1654 1687 3.493877 TCTTCGCTACGTAGATAGAGCAC 59.506 47.826 26.53 4.72 34.49 4.40
1659 1692 6.684979 CAGCATAATCTTCGCTACGTAGATAG 59.315 42.308 26.53 17.36 41.62 2.08
1663 1696 4.537965 ACAGCATAATCTTCGCTACGTAG 58.462 43.478 18.47 18.47 33.82 3.51
1667 1700 5.529791 TCCTAACAGCATAATCTTCGCTAC 58.470 41.667 0.00 0.00 33.82 3.58
1669 1702 4.672587 TCCTAACAGCATAATCTTCGCT 57.327 40.909 0.00 0.00 36.10 4.93
1670 1703 4.390297 GGATCCTAACAGCATAATCTTCGC 59.610 45.833 3.84 0.00 0.00 4.70
1671 1704 4.623167 CGGATCCTAACAGCATAATCTTCG 59.377 45.833 10.75 0.00 0.00 3.79
1672 1705 5.542779 ACGGATCCTAACAGCATAATCTTC 58.457 41.667 10.75 0.00 0.00 2.87
1699 1732 3.608316 ACAAAAGGCAGCAAGAAAACA 57.392 38.095 0.00 0.00 0.00 2.83
1700 1733 4.631377 AGAAACAAAAGGCAGCAAGAAAAC 59.369 37.500 0.00 0.00 0.00 2.43
1701 1734 4.831107 AGAAACAAAAGGCAGCAAGAAAA 58.169 34.783 0.00 0.00 0.00 2.29
1702 1735 4.470334 AGAAACAAAAGGCAGCAAGAAA 57.530 36.364 0.00 0.00 0.00 2.52
1722 1755 4.530094 TGCACGAACTACAACAGAAAAG 57.470 40.909 0.00 0.00 0.00 2.27
1750 1783 4.389374 CACCAAAGAGGAGCAGAGTAAAA 58.611 43.478 0.00 0.00 41.22 1.52
1822 1855 3.851845 TAGGGTGCGTGCGTGACAC 62.852 63.158 0.00 0.00 46.45 3.67
1827 1860 2.357034 CAAGTAGGGTGCGTGCGT 60.357 61.111 0.00 0.00 0.00 5.24
1829 1862 2.358737 AGCAAGTAGGGTGCGTGC 60.359 61.111 0.00 0.00 46.86 5.34
1834 1867 0.254178 AGATGGCAGCAAGTAGGGTG 59.746 55.000 5.19 0.00 39.22 4.61
1838 1871 3.943381 TCATGAAAGATGGCAGCAAGTAG 59.057 43.478 5.19 0.00 0.00 2.57
1915 1948 6.624861 CGGGCATAAATAGTTGAAGCAAAAGA 60.625 38.462 0.00 0.00 0.00 2.52
1949 1986 2.507324 GCTCCAACGGCGAGAGAC 60.507 66.667 23.21 13.93 0.00 3.36
1957 1994 2.956964 GATCGCTCGCTCCAACGG 60.957 66.667 0.00 0.00 0.00 4.44
1958 1995 1.148157 AATGATCGCTCGCTCCAACG 61.148 55.000 0.00 0.00 0.00 4.10
1959 1996 0.579156 GAATGATCGCTCGCTCCAAC 59.421 55.000 0.00 0.00 0.00 3.77
1960 1997 0.175531 TGAATGATCGCTCGCTCCAA 59.824 50.000 0.00 0.00 0.00 3.53
1961 1998 0.528466 GTGAATGATCGCTCGCTCCA 60.528 55.000 1.25 0.00 33.18 3.86
1962 1999 1.543941 CGTGAATGATCGCTCGCTCC 61.544 60.000 6.02 0.00 33.80 4.70
1963 2000 1.842686 CGTGAATGATCGCTCGCTC 59.157 57.895 6.02 0.00 33.80 5.03
1964 2001 4.003534 CGTGAATGATCGCTCGCT 57.996 55.556 6.02 0.00 33.80 4.93
1970 2007 4.327357 ACTTAGTTTCAGCGTGAATGATCG 59.673 41.667 2.09 0.00 36.11 3.69
1971 2008 5.554636 CACTTAGTTTCAGCGTGAATGATC 58.445 41.667 2.09 0.00 36.11 2.92
1972 2009 4.142816 GCACTTAGTTTCAGCGTGAATGAT 60.143 41.667 0.00 0.00 36.11 2.45
1973 2010 3.186409 GCACTTAGTTTCAGCGTGAATGA 59.814 43.478 0.00 0.00 36.11 2.57
1974 2011 3.482786 GCACTTAGTTTCAGCGTGAATG 58.517 45.455 0.00 0.00 36.11 2.67
1984 2021 0.163146 GACCGTGCGCACTTAGTTTC 59.837 55.000 35.27 18.58 0.00 2.78
1992 2029 0.040425 AAGAAAATGACCGTGCGCAC 60.040 50.000 30.42 30.42 0.00 5.34
1993 2030 0.665835 AAAGAAAATGACCGTGCGCA 59.334 45.000 5.66 5.66 0.00 6.09
1994 2031 1.451651 CAAAAGAAAATGACCGTGCGC 59.548 47.619 0.00 0.00 0.00 6.09
1995 2032 2.726633 ACAAAAGAAAATGACCGTGCG 58.273 42.857 0.00 0.00 0.00 5.34
1996 2033 4.602995 TGTACAAAAGAAAATGACCGTGC 58.397 39.130 0.00 0.00 0.00 5.34
1997 2034 5.212194 CCTGTACAAAAGAAAATGACCGTG 58.788 41.667 0.00 0.00 0.00 4.94
1998 2035 4.885325 ACCTGTACAAAAGAAAATGACCGT 59.115 37.500 0.00 0.00 0.00 4.83
1999 2036 5.432885 ACCTGTACAAAAGAAAATGACCG 57.567 39.130 0.00 0.00 0.00 4.79
2000 2037 5.300792 TGGACCTGTACAAAAGAAAATGACC 59.699 40.000 0.00 0.00 0.00 4.02
2001 2038 6.385649 TGGACCTGTACAAAAGAAAATGAC 57.614 37.500 0.00 0.00 0.00 3.06
2002 2039 6.549364 ACATGGACCTGTACAAAAGAAAATGA 59.451 34.615 0.00 0.00 0.00 2.57
2004 2041 6.738453 GCACATGGACCTGTACAAAAGAAAAT 60.738 38.462 0.00 0.00 0.00 1.82
2006 2043 4.037446 GCACATGGACCTGTACAAAAGAAA 59.963 41.667 0.00 0.00 0.00 2.52
2007 2044 3.568007 GCACATGGACCTGTACAAAAGAA 59.432 43.478 0.00 0.00 0.00 2.52
2008 2045 3.146066 GCACATGGACCTGTACAAAAGA 58.854 45.455 0.00 0.00 0.00 2.52
2009 2046 3.058016 CAGCACATGGACCTGTACAAAAG 60.058 47.826 0.00 0.00 0.00 2.27
2011 2048 2.503331 CAGCACATGGACCTGTACAAA 58.497 47.619 0.00 0.00 0.00 2.83
2044 2084 2.483441 CAAACGTGGACACACCCAA 58.517 52.632 3.12 0.00 44.86 4.12
2077 2117 2.638354 CCGGCAGCCATTTGAGCAA 61.638 57.895 13.30 0.00 0.00 3.91
2272 2312 1.316706 GCTAGTCGACTGAGGGCACT 61.317 60.000 28.12 0.00 0.00 4.40
2275 2315 1.324005 AAGGCTAGTCGACTGAGGGC 61.324 60.000 28.12 25.27 0.00 5.19
2276 2316 0.457851 CAAGGCTAGTCGACTGAGGG 59.542 60.000 28.12 15.18 0.00 4.30
2277 2317 1.178276 ACAAGGCTAGTCGACTGAGG 58.822 55.000 28.12 17.51 0.00 3.86
2278 2318 2.416162 GGAACAAGGCTAGTCGACTGAG 60.416 54.545 28.12 19.86 0.00 3.35
2279 2319 1.544691 GGAACAAGGCTAGTCGACTGA 59.455 52.381 28.12 10.96 0.00 3.41
2280 2320 1.272490 TGGAACAAGGCTAGTCGACTG 59.728 52.381 28.12 17.79 31.92 3.51
2281 2321 1.272769 GTGGAACAAGGCTAGTCGACT 59.727 52.381 23.66 23.66 44.16 4.18
2282 2322 1.711206 GTGGAACAAGGCTAGTCGAC 58.289 55.000 7.70 7.70 44.16 4.20
2283 2323 0.242825 CGTGGAACAAGGCTAGTCGA 59.757 55.000 0.00 0.00 44.16 4.20
2284 2324 0.242825 TCGTGGAACAAGGCTAGTCG 59.757 55.000 0.00 0.00 44.16 4.18
2285 2325 2.450609 TTCGTGGAACAAGGCTAGTC 57.549 50.000 0.00 0.00 44.16 2.59
2286 2326 2.367567 TCTTTCGTGGAACAAGGCTAGT 59.632 45.455 0.00 0.00 44.16 2.57
2287 2327 3.040147 TCTTTCGTGGAACAAGGCTAG 57.960 47.619 0.00 0.00 44.16 3.42
2288 2328 3.478857 TTCTTTCGTGGAACAAGGCTA 57.521 42.857 0.00 0.00 44.16 3.93
2289 2329 2.341846 TTCTTTCGTGGAACAAGGCT 57.658 45.000 0.00 0.00 44.16 4.58
2290 2330 4.759516 TTATTCTTTCGTGGAACAAGGC 57.240 40.909 0.00 0.00 44.16 4.35
2291 2331 8.726988 TCTTAATTATTCTTTCGTGGAACAAGG 58.273 33.333 0.00 0.00 44.16 3.61
2305 2345 9.174166 ACAGTTTACGCCAATCTTAATTATTCT 57.826 29.630 0.00 0.00 0.00 2.40
2308 2348 7.493320 TCGACAGTTTACGCCAATCTTAATTAT 59.507 33.333 0.00 0.00 0.00 1.28
2314 2354 3.034721 TCGACAGTTTACGCCAATCTT 57.965 42.857 0.00 0.00 0.00 2.40
2384 2424 0.405198 TTCATTCAAGGCCTGGCTGA 59.595 50.000 19.68 12.64 0.00 4.26
2411 2451 4.322567 GACAGAGAAGAAATGGAGCTTGT 58.677 43.478 0.00 0.00 0.00 3.16
2440 2486 2.646719 GTGCATGTGCTGTGGTGG 59.353 61.111 6.55 0.00 42.66 4.61
2459 2520 2.806608 TCGGCAGAGAAACGTAAAGT 57.193 45.000 0.00 0.00 0.00 2.66
2494 2562 0.179702 ATCACATGACCTCAGCGCAT 59.820 50.000 11.47 0.00 0.00 4.73
2721 2801 2.069273 CTACTGTGCCAGTACTGTTGC 58.931 52.381 21.18 17.82 43.46 4.17
2722 2802 2.688507 CCTACTGTGCCAGTACTGTTG 58.311 52.381 21.18 8.35 43.46 3.33
2897 2986 2.992114 ACTTGGCGCGAGAGAGGT 60.992 61.111 12.10 0.00 0.00 3.85
3023 3112 6.313905 GCACCCGAAATAGACCATATAGATTG 59.686 42.308 0.00 0.00 0.00 2.67
3100 3229 3.160679 AGCACTACCTTTCTTGCCAAT 57.839 42.857 0.00 0.00 35.47 3.16
3101 3230 2.656947 AGCACTACCTTTCTTGCCAA 57.343 45.000 0.00 0.00 35.47 4.52
3144 3274 7.931948 CGATCTTAATGGGGTAAAATCTACTGT 59.068 37.037 0.00 0.00 0.00 3.55
3145 3275 7.095187 GCGATCTTAATGGGGTAAAATCTACTG 60.095 40.741 0.00 0.00 0.00 2.74
3146 3276 6.935208 GCGATCTTAATGGGGTAAAATCTACT 59.065 38.462 0.00 0.00 0.00 2.57
3147 3277 6.935208 AGCGATCTTAATGGGGTAAAATCTAC 59.065 38.462 0.00 0.00 0.00 2.59
3148 3278 7.074653 AGCGATCTTAATGGGGTAAAATCTA 57.925 36.000 0.00 0.00 0.00 1.98
3149 3279 5.941788 AGCGATCTTAATGGGGTAAAATCT 58.058 37.500 0.00 0.00 0.00 2.40
3194 3324 7.733402 TTACATAGGCTGTAACGTTCTTTTT 57.267 32.000 2.82 0.00 43.72 1.94
3204 3334 5.286438 CGCATACAGTTACATAGGCTGTAA 58.714 41.667 0.00 0.00 45.20 2.41
3205 3335 4.794981 GCGCATACAGTTACATAGGCTGTA 60.795 45.833 0.30 6.17 45.83 2.74
3206 3336 3.717707 CGCATACAGTTACATAGGCTGT 58.282 45.455 0.00 0.00 44.49 4.40
3207 3337 2.476619 GCGCATACAGTTACATAGGCTG 59.523 50.000 0.30 0.00 36.41 4.85
3212 3342 4.665833 AAGGAGCGCATACAGTTACATA 57.334 40.909 11.47 0.00 0.00 2.29
3213 3343 3.543680 AAGGAGCGCATACAGTTACAT 57.456 42.857 11.47 0.00 0.00 2.29
3236 3366 7.297936 TGGAGTGTATCAGACTAGACAAAAA 57.702 36.000 0.00 0.00 0.00 1.94
3237 3367 6.911250 TGGAGTGTATCAGACTAGACAAAA 57.089 37.500 0.00 0.00 0.00 2.44
3246 3376 2.432146 TCAGCCATGGAGTGTATCAGAC 59.568 50.000 18.40 0.00 0.00 3.51
3281 3411 0.044702 AGACATCACCCCCATCCTGA 59.955 55.000 0.00 0.00 0.00 3.86
3293 3423 3.141398 GCCTTCTGTTGTGAAGACATCA 58.859 45.455 5.90 0.00 44.40 3.07
3307 3437 1.007387 GTTTTGGGCGTGCCTTCTG 60.007 57.895 11.25 0.00 36.10 3.02
3359 3489 0.739561 AGAATCCGACGGTGTAGAGC 59.260 55.000 14.79 0.00 0.00 4.09
3399 3529 1.270518 GCATAGGGCGTCTGATGATGT 60.271 52.381 0.00 0.00 0.00 3.06
3435 3565 2.175499 CTCTTTCCCTCCATTGGCCATA 59.825 50.000 6.09 0.00 0.00 2.74
3438 3568 0.625849 TCTCTTTCCCTCCATTGGCC 59.374 55.000 0.00 0.00 0.00 5.36
3465 3595 5.044558 GCTAGTGGGTTTATCTCTTTCTCG 58.955 45.833 0.00 0.00 0.00 4.04
3466 3596 5.978814 TGCTAGTGGGTTTATCTCTTTCTC 58.021 41.667 0.00 0.00 0.00 2.87
3467 3597 6.374417 TTGCTAGTGGGTTTATCTCTTTCT 57.626 37.500 0.00 0.00 0.00 2.52
3468 3598 6.599638 ACATTGCTAGTGGGTTTATCTCTTTC 59.400 38.462 0.00 0.00 0.00 2.62
3469 3599 6.375455 CACATTGCTAGTGGGTTTATCTCTTT 59.625 38.462 0.00 0.00 33.43 2.52
3470 3600 5.882557 CACATTGCTAGTGGGTTTATCTCTT 59.117 40.000 0.00 0.00 33.43 2.85
3498 3628 6.983307 GAGAATCAAACAGAGCTATCAGCTTA 59.017 38.462 1.60 0.00 44.13 3.09
3527 3657 4.021807 TCCTACTCAAACGCTGTACATTCA 60.022 41.667 0.00 0.00 0.00 2.57
3543 3673 7.843490 TGTTATATGCACAAAACTCCTACTC 57.157 36.000 0.00 0.00 0.00 2.59
3568 3698 2.932234 CGACAGGCAAGAGACGGGT 61.932 63.158 0.00 0.00 0.00 5.28
3570 3700 2.811317 GCGACAGGCAAGAGACGG 60.811 66.667 0.00 0.00 42.87 4.79
3588 3722 3.661944 CATTTAGCAAATGTTGTGCCCA 58.338 40.909 11.27 0.00 43.27 5.36
3663 3797 0.390472 AGAAGCTGGCTTACGTGCTC 60.390 55.000 7.87 0.00 36.26 4.26
3724 3860 7.444299 AGCTCTTGGCAATTATTTCTCAAAAA 58.556 30.769 0.00 0.00 44.79 1.94
3725 3861 6.996509 AGCTCTTGGCAATTATTTCTCAAAA 58.003 32.000 0.00 0.00 44.79 2.44
3726 3862 6.594788 AGCTCTTGGCAATTATTTCTCAAA 57.405 33.333 0.00 0.00 44.79 2.69
3728 3864 5.294306 CGTAGCTCTTGGCAATTATTTCTCA 59.706 40.000 0.00 0.00 44.79 3.27
3729 3865 5.523916 TCGTAGCTCTTGGCAATTATTTCTC 59.476 40.000 0.00 0.00 44.79 2.87
3730 3866 5.294552 GTCGTAGCTCTTGGCAATTATTTCT 59.705 40.000 0.00 0.00 44.79 2.52
3731 3867 5.502606 GTCGTAGCTCTTGGCAATTATTTC 58.497 41.667 0.00 0.00 44.79 2.17
3732 3868 4.034048 CGTCGTAGCTCTTGGCAATTATTT 59.966 41.667 0.00 0.00 44.79 1.40
3733 3869 3.555956 CGTCGTAGCTCTTGGCAATTATT 59.444 43.478 0.00 0.00 44.79 1.40
3734 3870 3.123804 CGTCGTAGCTCTTGGCAATTAT 58.876 45.455 0.00 0.00 44.79 1.28
3735 3871 2.536365 CGTCGTAGCTCTTGGCAATTA 58.464 47.619 0.00 0.00 44.79 1.40
3736 3872 1.359848 CGTCGTAGCTCTTGGCAATT 58.640 50.000 0.00 0.00 44.79 2.32
3737 3873 1.084370 GCGTCGTAGCTCTTGGCAAT 61.084 55.000 0.00 0.00 44.79 3.56
3738 3874 1.736645 GCGTCGTAGCTCTTGGCAA 60.737 57.895 0.00 0.00 44.79 4.52
3739 3875 2.126071 GCGTCGTAGCTCTTGGCA 60.126 61.111 0.00 0.00 44.79 4.92
3740 3876 3.248171 CGCGTCGTAGCTCTTGGC 61.248 66.667 0.00 0.00 42.19 4.52
3741 3877 1.403972 GAACGCGTCGTAGCTCTTGG 61.404 60.000 14.44 0.00 39.99 3.61
3742 3878 1.721257 CGAACGCGTCGTAGCTCTTG 61.721 60.000 14.44 0.00 45.09 3.02
3743 3879 1.511464 CGAACGCGTCGTAGCTCTT 60.511 57.895 14.44 0.00 45.09 2.85
3744 3880 2.097918 CGAACGCGTCGTAGCTCT 59.902 61.111 14.44 0.00 45.09 4.09
3766 3902 2.037136 CGAAAGAGGTGGCTGCTGG 61.037 63.158 0.00 0.00 0.00 4.85
3777 3914 4.547859 CCCATGAGGCCGAAAGAG 57.452 61.111 0.00 0.00 0.00 2.85
3806 3943 2.268920 GGCGTCAGGCTGGATTCA 59.731 61.111 15.73 0.00 42.94 2.57
3832 3969 0.258774 AACACCTGGTCCAAGCAACT 59.741 50.000 0.00 0.00 0.00 3.16
3869 4006 0.546267 TCAGCCCAGCCTTTCTCTCT 60.546 55.000 0.00 0.00 0.00 3.10
3871 4008 0.773644 TTTCAGCCCAGCCTTTCTCT 59.226 50.000 0.00 0.00 0.00 3.10
3891 4029 1.227383 CAGCCCATACTCAACCCCC 59.773 63.158 0.00 0.00 0.00 5.40
3939 4077 7.035612 GGAAAAACTGCTATGTATTGGAAAGG 58.964 38.462 0.00 0.00 0.00 3.11
3940 4078 7.035612 GGGAAAAACTGCTATGTATTGGAAAG 58.964 38.462 0.00 0.00 0.00 2.62
3952 4090 7.648039 TTTTACAAGAAGGGAAAAACTGCTA 57.352 32.000 0.00 0.00 0.00 3.49
4007 5736 4.891756 GGACTTGTACTACCCTATAGTGCA 59.108 45.833 0.00 1.34 38.15 4.57
4090 5819 5.445069 TGTGGGACATATGTTAAATCCTGG 58.555 41.667 10.30 0.00 44.52 4.45
4138 5871 1.201181 TCGTCCCCATTTTGATTTGCG 59.799 47.619 0.00 0.00 0.00 4.85
4162 5895 4.135153 CGTGTCGCCAGAGGAGGG 62.135 72.222 0.00 0.00 0.00 4.30
4163 5896 4.135153 CCGTGTCGCCAGAGGAGG 62.135 72.222 0.00 0.00 0.00 4.30
4164 5897 4.135153 CCCGTGTCGCCAGAGGAG 62.135 72.222 0.00 0.00 0.00 3.69
4169 5902 4.323477 TTTCCCCCGTGTCGCCAG 62.323 66.667 0.00 0.00 0.00 4.85
4170 5903 4.629523 GTTTCCCCCGTGTCGCCA 62.630 66.667 0.00 0.00 0.00 5.69
4197 5930 3.431725 GAGGGTTTCCTTGCGGCG 61.432 66.667 0.51 0.51 45.05 6.46
4198 5931 3.062466 GGAGGGTTTCCTTGCGGC 61.062 66.667 0.00 0.00 45.05 6.53
4199 5932 2.361230 GGGAGGGTTTCCTTGCGG 60.361 66.667 0.00 0.00 45.05 5.69
4200 5933 1.377333 GAGGGAGGGTTTCCTTGCG 60.377 63.158 0.00 0.00 45.05 4.85
4201 5934 1.000771 GGAGGGAGGGTTTCCTTGC 60.001 63.158 0.00 0.00 45.05 4.01
4202 5935 1.299976 CGGAGGGAGGGTTTCCTTG 59.700 63.158 0.00 0.00 45.05 3.61
4203 5936 2.603652 GCGGAGGGAGGGTTTCCTT 61.604 63.158 0.00 0.00 45.05 3.36
4205 5938 4.111053 GGCGGAGGGAGGGTTTCC 62.111 72.222 0.00 0.00 46.00 3.13
4206 5939 1.688187 TAGGCGGAGGGAGGGTTTC 60.688 63.158 0.00 0.00 0.00 2.78
4207 5940 1.993948 GTAGGCGGAGGGAGGGTTT 60.994 63.158 0.00 0.00 0.00 3.27
4208 5941 2.365237 GTAGGCGGAGGGAGGGTT 60.365 66.667 0.00 0.00 0.00 4.11
4209 5942 3.357082 AGTAGGCGGAGGGAGGGT 61.357 66.667 0.00 0.00 0.00 4.34
4210 5943 2.522193 GAGTAGGCGGAGGGAGGG 60.522 72.222 0.00 0.00 0.00 4.30
4211 5944 2.522193 GGAGTAGGCGGAGGGAGG 60.522 72.222 0.00 0.00 0.00 4.30
4212 5945 2.522193 GGGAGTAGGCGGAGGGAG 60.522 72.222 0.00 0.00 0.00 4.30
4213 5946 4.517934 CGGGAGTAGGCGGAGGGA 62.518 72.222 0.00 0.00 0.00 4.20
4216 5949 3.905678 CAGCGGGAGTAGGCGGAG 61.906 72.222 0.00 0.00 0.00 4.63
4278 6011 4.796495 GTCCCACCGCCACCATCC 62.796 72.222 0.00 0.00 0.00 3.51
4288 6021 4.383861 GAACCGACCCGTCCCACC 62.384 72.222 0.00 0.00 0.00 4.61
4289 6022 4.383861 GGAACCGACCCGTCCCAC 62.384 72.222 0.00 0.00 0.00 4.61
4322 6055 4.614036 GTTGTGGGTGGGGTGGGG 62.614 72.222 0.00 0.00 0.00 4.96
4323 6056 4.614036 GGTTGTGGGTGGGGTGGG 62.614 72.222 0.00 0.00 0.00 4.61
4324 6057 3.507377 GAGGTTGTGGGTGGGGTGG 62.507 68.421 0.00 0.00 0.00 4.61
4325 6058 2.115266 GAGGTTGTGGGTGGGGTG 59.885 66.667 0.00 0.00 0.00 4.61
4326 6059 3.566210 CGAGGTTGTGGGTGGGGT 61.566 66.667 0.00 0.00 0.00 4.95
4327 6060 3.246112 TCGAGGTTGTGGGTGGGG 61.246 66.667 0.00 0.00 0.00 4.96
4328 6061 1.553690 ATCTCGAGGTTGTGGGTGGG 61.554 60.000 13.56 0.00 0.00 4.61
4329 6062 0.108138 GATCTCGAGGTTGTGGGTGG 60.108 60.000 13.56 0.00 0.00 4.61
4330 6063 0.108138 GGATCTCGAGGTTGTGGGTG 60.108 60.000 13.56 0.00 0.00 4.61
4331 6064 0.544357 TGGATCTCGAGGTTGTGGGT 60.544 55.000 13.56 0.00 0.00 4.51
4332 6065 0.108138 GTGGATCTCGAGGTTGTGGG 60.108 60.000 13.56 0.00 0.00 4.61
4333 6066 0.108138 GGTGGATCTCGAGGTTGTGG 60.108 60.000 13.56 0.00 0.00 4.17
4334 6067 0.608130 TGGTGGATCTCGAGGTTGTG 59.392 55.000 13.56 0.00 0.00 3.33
4335 6068 0.898320 CTGGTGGATCTCGAGGTTGT 59.102 55.000 13.56 0.00 0.00 3.32
4336 6069 0.460987 GCTGGTGGATCTCGAGGTTG 60.461 60.000 13.56 0.00 0.00 3.77
4337 6070 1.617947 GGCTGGTGGATCTCGAGGTT 61.618 60.000 13.56 0.00 0.00 3.50
4338 6071 2.060980 GGCTGGTGGATCTCGAGGT 61.061 63.158 13.56 4.76 0.00 3.85
4339 6072 2.818132 GGCTGGTGGATCTCGAGG 59.182 66.667 13.56 0.00 0.00 4.63
4340 6073 2.343163 GACGGCTGGTGGATCTCGAG 62.343 65.000 5.93 5.93 0.00 4.04
4341 6074 2.362503 ACGGCTGGTGGATCTCGA 60.363 61.111 0.00 0.00 0.00 4.04
4342 6075 2.105128 GACGGCTGGTGGATCTCG 59.895 66.667 0.00 0.00 0.00 4.04
4343 6076 2.105128 CGACGGCTGGTGGATCTC 59.895 66.667 0.00 0.00 0.00 2.75
4344 6077 4.148825 GCGACGGCTGGTGGATCT 62.149 66.667 0.00 0.00 35.83 2.75
4367 6100 3.393149 GAGCGAAGGGGGAGCTTCC 62.393 68.421 0.70 0.70 41.84 3.46
4368 6101 2.188207 GAGCGAAGGGGGAGCTTC 59.812 66.667 0.00 0.00 41.84 3.86
4369 6102 3.775654 CGAGCGAAGGGGGAGCTT 61.776 66.667 0.00 0.00 41.84 3.74
4457 6190 3.011760 GCGTGAGAGGCGAAAACCG 62.012 63.158 0.00 0.00 42.21 4.44
4458 6191 1.228657 AAGCGTGAGAGGCGAAAACC 61.229 55.000 0.00 0.00 33.62 3.27
4459 6192 0.164002 GAAGCGTGAGAGGCGAAAAC 59.836 55.000 0.00 0.00 33.62 2.43
4460 6193 0.949105 GGAAGCGTGAGAGGCGAAAA 60.949 55.000 0.00 0.00 33.62 2.29
4461 6194 1.374252 GGAAGCGTGAGAGGCGAAA 60.374 57.895 0.00 0.00 33.62 3.46
4462 6195 2.261671 GGAAGCGTGAGAGGCGAA 59.738 61.111 0.00 0.00 33.62 4.70
4463 6196 3.760035 GGGAAGCGTGAGAGGCGA 61.760 66.667 0.00 0.00 33.62 5.54
4464 6197 4.821589 GGGGAAGCGTGAGAGGCG 62.822 72.222 0.00 0.00 33.62 5.52
4465 6198 4.475135 GGGGGAAGCGTGAGAGGC 62.475 72.222 0.00 0.00 0.00 4.70
4466 6199 1.381327 TAGGGGGAAGCGTGAGAGG 60.381 63.158 0.00 0.00 0.00 3.69
4467 6200 1.677637 GGTAGGGGGAAGCGTGAGAG 61.678 65.000 0.00 0.00 0.00 3.20
4468 6201 1.684734 GGTAGGGGGAAGCGTGAGA 60.685 63.158 0.00 0.00 0.00 3.27
4469 6202 2.732619 GGGTAGGGGGAAGCGTGAG 61.733 68.421 0.00 0.00 0.00 3.51
4470 6203 2.686106 GGGTAGGGGGAAGCGTGA 60.686 66.667 0.00 0.00 0.00 4.35
4471 6204 3.793888 GGGGTAGGGGGAAGCGTG 61.794 72.222 0.00 0.00 0.00 5.34
4475 6208 2.772622 ATGCGGGGTAGGGGGAAG 60.773 66.667 0.00 0.00 0.00 3.46
4476 6209 2.770904 GATGCGGGGTAGGGGGAA 60.771 66.667 0.00 0.00 0.00 3.97
4477 6210 4.892291 GGATGCGGGGTAGGGGGA 62.892 72.222 0.00 0.00 0.00 4.81
4482 6215 2.516888 AATCGGGGATGCGGGGTAG 61.517 63.158 0.00 0.00 0.00 3.18
4483 6216 2.446994 AATCGGGGATGCGGGGTA 60.447 61.111 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.