Multiple sequence alignment - TraesCS3B01G261500
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G261500
chr3B
100.000
6729
0
0
1
6729
419760792
419767520
0.000000e+00
12427.0
1
TraesCS3B01G261500
chr3B
91.860
86
6
1
6240
6325
752687047
752687131
1.190000e-22
119.0
2
TraesCS3B01G261500
chr3D
95.342
5560
191
25
630
6144
301445997
301440461
0.000000e+00
8770.0
3
TraesCS3B01G261500
chr3D
94.728
569
16
3
6159
6727
301440477
301439923
0.000000e+00
872.0
4
TraesCS3B01G261500
chr3D
89.474
95
4
3
6240
6333
557459100
557459189
1.530000e-21
115.0
5
TraesCS3B01G261500
chr3D
89.655
87
4
3
6240
6326
557459180
557459099
9.230000e-19
106.0
6
TraesCS3B01G261500
chr3A
96.536
3378
103
6
2582
5948
433997287
434000661
0.000000e+00
5578.0
7
TraesCS3B01G261500
chr3A
90.672
2069
110
35
555
2589
433994351
433996370
0.000000e+00
2675.0
8
TraesCS3B01G261500
chr3A
95.637
573
21
3
6159
6729
434000812
434001382
0.000000e+00
917.0
9
TraesCS3B01G261500
chr3A
88.571
560
64
0
1
560
433993764
433994323
0.000000e+00
680.0
10
TraesCS3B01G261500
chr3A
97.076
171
4
1
5975
6144
434000658
434000828
3.070000e-73
287.0
11
TraesCS3B01G261500
chr7B
88.195
2465
286
5
3115
5576
624351116
624353578
0.000000e+00
2935.0
12
TraesCS3B01G261500
chr5D
88.116
2457
286
6
3125
5578
534856926
534859379
0.000000e+00
2915.0
13
TraesCS3B01G261500
chr5D
87.817
2487
292
10
3114
5595
534637021
534639501
0.000000e+00
2904.0
14
TraesCS3B01G261500
chr5D
89.062
64
7
0
336
399
241848258
241848321
5.590000e-11
80.5
15
TraesCS3B01G261500
chr5B
87.997
2466
289
7
3114
5575
674892238
674894700
0.000000e+00
2907.0
16
TraesCS3B01G261500
chr5B
87.919
2475
289
9
3125
5595
675080219
675082687
0.000000e+00
2905.0
17
TraesCS3B01G261500
chr7D
87.792
2482
298
4
3115
5594
568598492
568600970
0.000000e+00
2900.0
18
TraesCS3B01G261500
chr7D
92.632
95
5
2
6240
6333
20239060
20238967
1.180000e-27
135.0
19
TraesCS3B01G261500
chr7A
87.631
2482
302
4
3115
5594
657353214
657355692
0.000000e+00
2878.0
20
TraesCS3B01G261500
chr7A
92.632
95
5
2
6240
6333
20293356
20293263
1.180000e-27
135.0
21
TraesCS3B01G261500
chr4A
83.673
147
21
3
2137
2282
636687839
636687695
1.180000e-27
135.0
22
TraesCS3B01G261500
chr6B
82.051
156
24
3
363
516
127749011
127749164
5.480000e-26
130.0
23
TraesCS3B01G261500
chr4D
90.805
87
7
1
6241
6327
326380842
326380757
1.530000e-21
115.0
24
TraesCS3B01G261500
chr1B
89.362
94
7
3
6240
6332
491083400
491083491
1.530000e-21
115.0
25
TraesCS3B01G261500
chr2B
85.714
105
13
2
6490
6592
442337633
442337737
7.130000e-20
110.0
26
TraesCS3B01G261500
chr2A
85.294
102
13
2
6493
6592
504546816
504546715
3.320000e-18
104.0
27
TraesCS3B01G261500
chr2D
83.810
105
15
2
6490
6592
372813173
372813277
1.540000e-16
99.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G261500
chr3B
419760792
419767520
6728
False
12427.0
12427
100.0000
1
6729
1
chr3B.!!$F1
6728
1
TraesCS3B01G261500
chr3D
301439923
301445997
6074
True
4821.0
8770
95.0350
630
6727
2
chr3D.!!$R2
6097
2
TraesCS3B01G261500
chr3A
433993764
434001382
7618
False
2027.4
5578
93.6984
1
6729
5
chr3A.!!$F1
6728
3
TraesCS3B01G261500
chr7B
624351116
624353578
2462
False
2935.0
2935
88.1950
3115
5576
1
chr7B.!!$F1
2461
4
TraesCS3B01G261500
chr5D
534856926
534859379
2453
False
2915.0
2915
88.1160
3125
5578
1
chr5D.!!$F3
2453
5
TraesCS3B01G261500
chr5D
534637021
534639501
2480
False
2904.0
2904
87.8170
3114
5595
1
chr5D.!!$F2
2481
6
TraesCS3B01G261500
chr5B
674892238
674894700
2462
False
2907.0
2907
87.9970
3114
5575
1
chr5B.!!$F1
2461
7
TraesCS3B01G261500
chr5B
675080219
675082687
2468
False
2905.0
2905
87.9190
3125
5595
1
chr5B.!!$F2
2470
8
TraesCS3B01G261500
chr7D
568598492
568600970
2478
False
2900.0
2900
87.7920
3115
5594
1
chr7D.!!$F1
2479
9
TraesCS3B01G261500
chr7A
657353214
657355692
2478
False
2878.0
2878
87.6310
3115
5594
1
chr7A.!!$F1
2479
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
417
418
0.179034
CTCCTACAGGGCATGAAGGC
60.179
60.000
5.99
0.0
43.27
4.35
F
1242
1286
0.034767
TCCCTGTAGATCGTCCGTGT
60.035
55.000
0.00
0.0
0.00
4.49
F
1249
1293
0.387929
AGATCGTCCGTGTGTTGTGT
59.612
50.000
0.00
0.0
0.00
3.72
F
2286
2361
0.546122
GGACCATGGTATGTGCTGGA
59.454
55.000
19.80
0.0
32.92
3.86
F
3911
4918
2.022195
CTGCATGAATGACCAGAAGGG
58.978
52.381
0.00
0.0
44.81
3.95
F
4758
5765
0.321671
TTCTTGAGAAGTCCTGCCGG
59.678
55.000
0.00
0.0
0.00
6.13
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2289
2364
0.313987
GTGCAACCCAAGCAGTAACC
59.686
55.000
0.00
0.0
43.63
2.85
R
2537
2612
0.698238
TGGGCATGTGTTCTAGGCTT
59.302
50.000
0.00
0.0
0.00
4.35
R
2538
2613
0.921896
ATGGGCATGTGTTCTAGGCT
59.078
50.000
0.00
0.0
0.00
4.58
R
4092
5099
0.335019
GGGGGCCCTCATACAAGTTT
59.665
55.000
24.38
0.0
0.00
2.66
R
4956
5963
1.603455
CATGTTCGGCCCAGTGGTT
60.603
57.895
8.74
0.0
0.00
3.67
R
6609
7623
0.250901
ACGCCAGCCAAATCACTCTT
60.251
50.000
0.00
0.0
0.00
2.85
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
26
27
4.767255
GCCTCCTGCTGTCCCACG
62.767
72.222
0.00
0.00
36.87
4.94
56
57
0.182299
TGTCCCTGACACATGCACAA
59.818
50.000
0.00
0.00
37.67
3.33
67
68
2.413112
CACATGCACAAACTACCTCGAG
59.587
50.000
5.13
5.13
0.00
4.04
80
81
4.580995
ACTACCTCGAGTTGGATCATGTAG
59.419
45.833
12.31
13.56
0.00
2.74
82
83
3.634448
ACCTCGAGTTGGATCATGTAGAG
59.366
47.826
12.31
0.00
0.00
2.43
95
96
9.093458
TGGATCATGTAGAGCTCATTAAAGATA
57.907
33.333
17.77
0.00
31.91
1.98
105
106
7.563188
AGAGCTCATTAAAGATAGACCTCTTCA
59.437
37.037
17.77
0.00
34.40
3.02
123
124
1.474478
TCACGCTCATGAGAGAACTCC
59.526
52.381
30.04
8.62
44.98
3.85
130
131
1.045911
ATGAGAGAACTCCCGCTCCC
61.046
60.000
0.00
0.00
41.99
4.30
146
147
1.490910
CTCCCCTCATAAACCCTCACC
59.509
57.143
0.00
0.00
0.00
4.02
174
175
0.459899
GTGCCATTCCGGAAAATCCC
59.540
55.000
23.08
8.70
36.56
3.85
177
178
1.308998
CCATTCCGGAAAATCCCTCG
58.691
55.000
23.08
2.43
36.56
4.63
184
185
2.034124
CGGAAAATCCCTCGGTAGGTA
58.966
52.381
0.00
0.00
41.89
3.08
186
187
3.828451
CGGAAAATCCCTCGGTAGGTATA
59.172
47.826
0.00
0.00
41.89
1.47
205
206
0.905357
ACTGGCATGGTGACTAGGTC
59.095
55.000
0.00
0.00
0.00
3.85
219
220
2.840651
ACTAGGTCAGAGGGGAAACATG
59.159
50.000
0.00
0.00
0.00
3.21
224
225
2.303022
GTCAGAGGGGAAACATGAGACA
59.697
50.000
0.00
0.00
0.00
3.41
231
232
5.070685
AGGGGAAACATGAGACAGTTTTAC
58.929
41.667
0.00
0.00
38.01
2.01
243
244
1.474077
CAGTTTTACCCATGCTCAGGC
59.526
52.381
0.00
0.00
39.26
4.85
245
246
0.324275
TTTTACCCATGCTCAGGCCC
60.324
55.000
0.00
0.00
37.74
5.80
250
251
2.192443
CATGCTCAGGCCCTCTGG
59.808
66.667
0.00
0.00
43.53
3.86
271
272
6.555360
TCTGGAAGAGATAAAATCCTACTCCC
59.445
42.308
0.00
0.00
38.67
4.30
300
301
7.017155
TCTGTGTATATTGCTATTGGGGTGTAT
59.983
37.037
0.00
0.00
0.00
2.29
309
310
7.144234
TGCTATTGGGGTGTATAAAGTACAT
57.856
36.000
0.00
0.00
0.00
2.29
340
341
4.153655
CGAAGGATTGCATGATATGTGGAG
59.846
45.833
0.00
0.00
0.00
3.86
361
362
1.758514
GAGTCCTCCATGGCTCCGA
60.759
63.158
6.96
0.00
34.84
4.55
395
396
2.802787
ACGACAAGACTTCCAGAGTG
57.197
50.000
0.00
0.00
39.19
3.51
401
402
3.070302
ACAAGACTTCCAGAGTGTTCTCC
59.930
47.826
0.00
0.00
39.64
3.71
404
405
4.083565
AGACTTCCAGAGTGTTCTCCTAC
58.916
47.826
0.00
0.00
41.26
3.18
410
411
1.203187
AGAGTGTTCTCCTACAGGGCA
60.203
52.381
0.00
0.00
41.26
5.36
411
412
1.834263
GAGTGTTCTCCTACAGGGCAT
59.166
52.381
0.00
0.00
34.87
4.40
412
413
1.556911
AGTGTTCTCCTACAGGGCATG
59.443
52.381
0.00
0.00
35.41
4.06
417
418
0.179034
CTCCTACAGGGCATGAAGGC
60.179
60.000
5.99
0.00
43.27
4.35
428
429
2.508526
GCATGAAGGCCCTACTAATGG
58.491
52.381
0.00
0.00
0.00
3.16
451
452
4.832608
GGCGCAACCGACCTAGGG
62.833
72.222
14.81
0.00
36.14
3.53
491
492
3.440415
GCCGGTAACCAGCAAGGC
61.440
66.667
1.90
0.00
43.14
4.35
493
494
2.047655
CGGTAACCAGCAAGGCGA
60.048
61.111
0.00
0.00
43.14
5.54
523
524
4.382254
CCTGAGCCATAACACCGTTAGTAA
60.382
45.833
0.00
0.00
0.00
2.24
526
527
3.516700
AGCCATAACACCGTTAGTAACCT
59.483
43.478
7.45
0.00
0.00
3.50
527
528
4.019950
AGCCATAACACCGTTAGTAACCTT
60.020
41.667
7.45
0.00
0.00
3.50
533
534
4.129380
ACACCGTTAGTAACCTTTGAACC
58.871
43.478
7.45
0.00
0.00
3.62
534
535
4.128643
CACCGTTAGTAACCTTTGAACCA
58.871
43.478
7.45
0.00
0.00
3.67
537
538
4.450080
CCGTTAGTAACCTTTGAACCAGTC
59.550
45.833
7.45
0.00
0.00
3.51
544
545
2.443255
ACCTTTGAACCAGTCATCAGGT
59.557
45.455
3.10
3.10
42.04
4.00
549
550
1.620822
AACCAGTCATCAGGTTTGGC
58.379
50.000
0.00
0.00
45.46
4.52
555
556
1.135199
GTCATCAGGTTTGGCTGCATG
60.135
52.381
0.50
0.00
0.00
4.06
578
612
5.065859
TGCCGAACACGATCAATCAAATATT
59.934
36.000
0.00
0.00
0.00
1.28
579
613
5.396362
GCCGAACACGATCAATCAAATATTG
59.604
40.000
0.00
0.00
0.00
1.90
588
622
9.241317
ACGATCAATCAAATATTGAAAGCAATC
57.759
29.630
4.67
0.00
43.43
2.67
589
623
9.459640
CGATCAATCAAATATTGAAAGCAATCT
57.540
29.630
4.67
0.00
43.43
2.40
607
641
6.319658
AGCAATCTATTTTGTCCATACCACAG
59.680
38.462
0.00
0.00
0.00
3.66
631
666
7.955324
CAGTGGACATAAACACAAATACTTACG
59.045
37.037
0.00
0.00
39.99
3.18
632
667
7.118680
AGTGGACATAAACACAAATACTTACGG
59.881
37.037
0.00
0.00
39.99
4.02
635
670
7.201582
GGACATAAACACAAATACTTACGGAGG
60.202
40.741
0.00
0.00
0.00
4.30
636
671
7.163441
ACATAAACACAAATACTTACGGAGGT
58.837
34.615
0.00
0.00
0.00
3.85
688
723
7.161404
TGTTCATAGTAGAGCAGATTTGTTGT
58.839
34.615
0.00
0.00
0.00
3.32
925
968
1.140816
GCGCATTCTCCGAACTATCC
58.859
55.000
0.30
0.00
0.00
2.59
944
987
0.250234
CCTTCCTTGGTGCAGATCGA
59.750
55.000
0.00
0.00
0.00
3.59
1031
1074
2.486203
CACTACGCAGCCAATAAAACCA
59.514
45.455
0.00
0.00
0.00
3.67
1035
1078
0.972883
GCAGCCAATAAAACCACCCA
59.027
50.000
0.00
0.00
0.00
4.51
1220
1264
1.102978
TCCTTGTGCTCGATCGATCA
58.897
50.000
24.40
18.34
0.00
2.92
1242
1286
0.034767
TCCCTGTAGATCGTCCGTGT
60.035
55.000
0.00
0.00
0.00
4.49
1244
1288
0.809385
CCTGTAGATCGTCCGTGTGT
59.191
55.000
0.00
0.00
0.00
3.72
1247
1291
1.610038
TGTAGATCGTCCGTGTGTTGT
59.390
47.619
0.00
0.00
0.00
3.32
1248
1292
1.983605
GTAGATCGTCCGTGTGTTGTG
59.016
52.381
0.00
0.00
0.00
3.33
1249
1293
0.387929
AGATCGTCCGTGTGTTGTGT
59.612
50.000
0.00
0.00
0.00
3.72
1337
1383
7.636150
TGTAGTAGGTACAAGTAATGGTCTC
57.364
40.000
0.00
0.00
38.78
3.36
1385
1431
9.599866
CTGGTAGATGTATCTTTTGTATCACAA
57.400
33.333
0.00
0.00
38.32
3.33
1462
1508
2.528688
GCCGTTCTGTTGAAACGTTTTC
59.471
45.455
15.89
9.01
33.52
2.29
1467
1513
1.843753
CTGTTGAAACGTTTTCGGTGC
59.156
47.619
15.89
1.44
45.05
5.01
1468
1514
1.469308
TGTTGAAACGTTTTCGGTGCT
59.531
42.857
15.89
0.00
45.05
4.40
1469
1515
2.676839
TGTTGAAACGTTTTCGGTGCTA
59.323
40.909
15.89
0.00
45.05
3.49
1470
1516
3.031126
GTTGAAACGTTTTCGGTGCTAC
58.969
45.455
15.89
4.65
45.05
3.58
1471
1517
1.258458
TGAAACGTTTTCGGTGCTACG
59.742
47.619
15.89
0.00
45.05
3.51
1486
1532
5.004630
CGGTGCTACGTATTTTACATTCGAA
59.995
40.000
0.00
0.00
0.00
3.71
1490
1536
8.721476
GTGCTACGTATTTTACATTCGAATTTG
58.279
33.333
8.21
2.13
0.00
2.32
1503
1549
5.759506
TTCGAATTTGTTTCCAGTAGCAA
57.240
34.783
0.00
0.00
0.00
3.91
1575
1642
3.758755
AGTTTCTGCAGAGTGACATGA
57.241
42.857
17.43
0.00
0.00
3.07
1656
1723
6.748132
TGATTCATGCGATTCACTAGATACA
58.252
36.000
0.00
0.00
28.89
2.29
1710
1777
6.946229
TGATACAAGAGCTTCGTTTAGTTC
57.054
37.500
0.00
0.00
0.00
3.01
1714
1781
4.745620
ACAAGAGCTTCGTTTAGTTCTGTC
59.254
41.667
0.00
0.00
36.09
3.51
1715
1782
4.585955
AGAGCTTCGTTTAGTTCTGTCA
57.414
40.909
0.00
0.00
34.85
3.58
1718
1785
3.997021
AGCTTCGTTTAGTTCTGTCATGG
59.003
43.478
0.00
0.00
0.00
3.66
1731
1798
3.202818
TCTGTCATGGCAATCTTGGGTAT
59.797
43.478
0.00
0.00
0.00
2.73
1732
1799
3.956199
CTGTCATGGCAATCTTGGGTATT
59.044
43.478
0.00
0.00
0.00
1.89
1831
1898
6.449635
TTGTGTTGCAGTCTAAAGTTCATT
57.550
33.333
0.00
0.00
0.00
2.57
1952
2019
4.734398
TGTTTTCAACCTGTGCTTTGAT
57.266
36.364
0.00
0.00
31.87
2.57
1953
2020
5.083533
TGTTTTCAACCTGTGCTTTGATT
57.916
34.783
0.00
0.00
31.87
2.57
1979
2046
7.945033
TTTTTACCATGTCTGCAGAATTTTC
57.055
32.000
20.19
6.12
0.00
2.29
2219
2294
3.034635
AGTAGAAGGACTCCGCATCATT
58.965
45.455
0.00
0.00
0.00
2.57
2286
2361
0.546122
GGACCATGGTATGTGCTGGA
59.454
55.000
19.80
0.00
32.92
3.86
2289
2364
2.684881
GACCATGGTATGTGCTGGAAAG
59.315
50.000
19.80
0.00
32.92
2.62
2369
2444
4.442753
GGTTGATCCCTTTTTGCTTGTTCA
60.443
41.667
0.00
0.00
0.00
3.18
2535
2610
6.486320
TGTTCATGATGTCTCTTGTTTTGCTA
59.514
34.615
0.00
0.00
0.00
3.49
2536
2611
6.732531
TCATGATGTCTCTTGTTTTGCTAG
57.267
37.500
0.00
0.00
0.00
3.42
2537
2612
6.466812
TCATGATGTCTCTTGTTTTGCTAGA
58.533
36.000
0.00
0.00
0.00
2.43
2538
2613
6.936335
TCATGATGTCTCTTGTTTTGCTAGAA
59.064
34.615
0.00
0.00
0.00
2.10
2539
2614
6.791887
TGATGTCTCTTGTTTTGCTAGAAG
57.208
37.500
0.00
0.00
0.00
2.85
2540
2615
5.180117
TGATGTCTCTTGTTTTGCTAGAAGC
59.820
40.000
0.00
0.00
42.82
3.86
2541
2616
3.815401
TGTCTCTTGTTTTGCTAGAAGCC
59.185
43.478
0.00
0.00
41.51
4.35
2542
2617
4.068599
GTCTCTTGTTTTGCTAGAAGCCT
58.931
43.478
0.00
0.00
41.51
4.58
2608
3607
9.877137
TTGCATAATATAGCTCGTTTACATTTG
57.123
29.630
0.00
0.00
0.00
2.32
2655
3654
5.688621
CCTGAAAATTGCAATCCATATGACG
59.311
40.000
13.38
0.00
0.00
4.35
2765
3764
7.982252
TCTGATCATCCAGGATTTAAAGCTAT
58.018
34.615
0.00
0.00
34.99
2.97
2981
3980
9.983024
TTAGTAATCCCTGAATTCCAACATTTA
57.017
29.630
2.27
0.00
0.00
1.40
2996
3995
8.561738
TCCAACATTTATGTACTCTCCTTTTC
57.438
34.615
0.00
0.00
40.80
2.29
3033
4032
4.645136
TCGACTGTGCTCTATCTTTATGGT
59.355
41.667
0.00
0.00
0.00
3.55
3522
4529
3.131709
ACTGTGAACAAGATGGACAGG
57.868
47.619
0.00
0.00
38.69
4.00
3911
4918
2.022195
CTGCATGAATGACCAGAAGGG
58.978
52.381
0.00
0.00
44.81
3.95
4065
5072
4.370776
TGATATTCCACCTTCCTTCTCCA
58.629
43.478
0.00
0.00
0.00
3.86
4092
5099
5.386958
AAGCACAGAAGTATCGTGTAGAA
57.613
39.130
0.00
0.00
34.63
2.10
4125
5132
1.202818
GGCCCCCTTGATGATGTCTAC
60.203
57.143
0.00
0.00
0.00
2.59
4131
5138
2.282555
CCTTGATGATGTCTACGCAACG
59.717
50.000
0.00
0.00
0.00
4.10
4158
5165
1.202818
AGAAACTGTGACCCAGAAGGC
60.203
52.381
0.00
0.00
44.49
4.35
4435
5442
5.413833
CAGTTCATCACAAAGAATGCTACCT
59.586
40.000
0.00
0.00
0.00
3.08
4623
5630
2.224161
GGAAGAGTCTGGCGAGCATATT
60.224
50.000
0.00
0.00
0.00
1.28
4731
5738
1.433534
CTCCTGTTGTCTCTTTCCGC
58.566
55.000
0.00
0.00
0.00
5.54
4758
5765
0.321671
TTCTTGAGAAGTCCTGCCGG
59.678
55.000
0.00
0.00
0.00
6.13
4779
5786
0.325933
CTGTGATGAGCAAGTCCCCA
59.674
55.000
0.00
0.00
0.00
4.96
4956
5963
1.848652
TTTGGTGTTTTGGACCCGAA
58.151
45.000
0.00
0.00
31.84
4.30
5590
6597
8.686334
TCTAAATTTTTGCTCCCATGTTATCTC
58.314
33.333
0.00
0.00
0.00
2.75
5629
6636
7.759489
TTTTTATCTATGCTTGGTCTGTGTT
57.241
32.000
0.00
0.00
0.00
3.32
5637
6644
5.738619
TGCTTGGTCTGTGTTAAGAGATA
57.261
39.130
0.00
0.00
0.00
1.98
5638
6645
5.479306
TGCTTGGTCTGTGTTAAGAGATAC
58.521
41.667
0.00
0.00
0.00
2.24
5706
6715
9.413048
CCTATTTCGGTCTCTTATCAGATTTAC
57.587
37.037
0.00
0.00
0.00
2.01
5755
6767
6.251376
GCTTGATTGAGTGGTTAATTTTAGCG
59.749
38.462
0.00
0.00
0.00
4.26
5964
6976
6.312399
ACGCTCATTGATTCTGTTTGTAAA
57.688
33.333
0.00
0.00
0.00
2.01
6044
7056
9.424319
CACTGTACACTGTATTATTTCTTGACT
57.576
33.333
0.00
0.00
0.00
3.41
6127
7140
2.431683
GCAACCTGGGCAGACTCA
59.568
61.111
0.00
0.00
0.00
3.41
6128
7141
1.228245
GCAACCTGGGCAGACTCAA
60.228
57.895
0.00
0.00
0.00
3.02
6129
7142
1.239968
GCAACCTGGGCAGACTCAAG
61.240
60.000
0.00
0.00
0.00
3.02
6130
7143
0.109342
CAACCTGGGCAGACTCAAGT
59.891
55.000
0.00
0.00
0.00
3.16
6131
7144
0.398318
AACCTGGGCAGACTCAAGTC
59.602
55.000
1.79
1.79
45.08
3.01
6132
7145
1.298014
CCTGGGCAGACTCAAGTCC
59.702
63.158
6.54
0.00
45.85
3.85
6133
7146
1.197430
CCTGGGCAGACTCAAGTCCT
61.197
60.000
6.54
0.00
45.85
3.85
6134
7147
0.036577
CTGGGCAGACTCAAGTCCTG
60.037
60.000
6.54
6.03
45.85
3.86
6135
7148
0.471780
TGGGCAGACTCAAGTCCTGA
60.472
55.000
6.54
0.00
45.85
3.86
6136
7149
0.687354
GGGCAGACTCAAGTCCTGAA
59.313
55.000
6.54
0.00
45.85
3.02
6137
7150
1.280421
GGGCAGACTCAAGTCCTGAAT
59.720
52.381
6.54
0.00
45.85
2.57
6138
7151
2.290577
GGGCAGACTCAAGTCCTGAATT
60.291
50.000
6.54
0.00
45.85
2.17
6139
7152
2.746362
GGCAGACTCAAGTCCTGAATTG
59.254
50.000
6.54
1.10
45.85
2.32
6140
7153
3.406764
GCAGACTCAAGTCCTGAATTGT
58.593
45.455
6.54
0.00
45.85
2.71
6141
7154
3.817647
GCAGACTCAAGTCCTGAATTGTT
59.182
43.478
6.54
0.00
45.85
2.83
6142
7155
4.276926
GCAGACTCAAGTCCTGAATTGTTT
59.723
41.667
6.54
0.00
45.85
2.83
6143
7156
5.221126
GCAGACTCAAGTCCTGAATTGTTTT
60.221
40.000
6.54
0.00
45.85
2.43
6144
7157
6.681368
GCAGACTCAAGTCCTGAATTGTTTTT
60.681
38.462
6.54
0.00
45.85
1.94
6193
7206
5.518128
TGTTTTCGTTTTGACATTGTCCATG
59.482
36.000
14.05
4.38
39.07
3.66
6195
7208
4.221926
TCGTTTTGACATTGTCCATGTG
57.778
40.909
14.05
2.31
46.96
3.21
6196
7209
2.725723
CGTTTTGACATTGTCCATGTGC
59.274
45.455
14.05
0.00
46.96
4.57
6197
7210
3.550639
CGTTTTGACATTGTCCATGTGCT
60.551
43.478
14.05
0.00
46.96
4.40
6198
7211
3.921119
TTTGACATTGTCCATGTGCTC
57.079
42.857
14.05
0.00
46.96
4.26
6200
7213
0.729116
GACATTGTCCATGTGCTCCG
59.271
55.000
5.44
0.00
46.96
4.63
6202
7215
0.392863
CATTGTCCATGTGCTCCGGA
60.393
55.000
2.93
2.93
0.00
5.14
6204
7217
2.662596
GTCCATGTGCTCCGGACA
59.337
61.111
15.78
0.00
46.98
4.02
6205
7218
1.741770
GTCCATGTGCTCCGGACAC
60.742
63.158
22.58
22.58
46.98
3.67
6359
7373
2.256306
GGGAGCCAAAAGATTTTCCCA
58.744
47.619
7.60
0.00
33.16
4.37
6511
7525
6.378280
CCCTGCTAATATTTGTTTCAGGTCTT
59.622
38.462
15.46
0.00
38.27
3.01
6596
7610
6.610741
CCAATATGGTTTTAGAGTCTCTGC
57.389
41.667
12.92
0.50
31.35
4.26
6607
7621
4.630644
AGAGTCTCTGCCAAGATGAAAA
57.369
40.909
0.18
0.00
0.00
2.29
6609
7623
4.285517
AGAGTCTCTGCCAAGATGAAAAGA
59.714
41.667
0.18
0.00
0.00
2.52
6671
7686
4.022676
TGCACACACGATTGTCTTCTAGTA
60.023
41.667
0.00
0.00
31.66
1.82
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
14
15
0.388649
GTACTCACGTGGGACAGCAG
60.389
60.000
25.18
9.65
41.80
4.24
17
18
0.243907
CTGGTACTCACGTGGGACAG
59.756
60.000
25.18
21.45
41.80
3.51
53
54
3.576982
TGATCCAACTCGAGGTAGTTTGT
59.423
43.478
18.41
0.00
37.61
2.83
56
57
3.769844
ACATGATCCAACTCGAGGTAGTT
59.230
43.478
18.41
0.00
40.33
2.24
67
68
7.712639
TCTTTAATGAGCTCTACATGATCCAAC
59.287
37.037
16.19
0.00
0.00
3.77
82
83
6.419413
CGTGAAGAGGTCTATCTTTAATGAGC
59.581
42.308
0.00
0.00
39.63
4.26
95
96
1.476085
CTCATGAGCGTGAAGAGGTCT
59.524
52.381
10.38
0.00
37.07
3.85
105
106
0.820871
GGGAGTTCTCTCATGAGCGT
59.179
55.000
18.36
0.00
42.05
5.07
123
124
1.148498
GGGTTTATGAGGGGAGCGG
59.852
63.158
0.00
0.00
0.00
5.52
130
131
1.200519
TCGGGTGAGGGTTTATGAGG
58.799
55.000
0.00
0.00
0.00
3.86
146
147
1.560004
CGGAATGGCACGATGATCGG
61.560
60.000
19.82
9.17
45.59
4.18
174
175
2.231478
CCATGCCAGTATACCTACCGAG
59.769
54.545
0.00
0.00
0.00
4.63
177
178
2.969950
TCACCATGCCAGTATACCTACC
59.030
50.000
0.00
0.00
0.00
3.18
184
185
2.700897
GACCTAGTCACCATGCCAGTAT
59.299
50.000
0.00
0.00
32.09
2.12
186
187
0.905357
GACCTAGTCACCATGCCAGT
59.095
55.000
0.00
0.00
32.09
4.00
205
206
2.304180
ACTGTCTCATGTTTCCCCTCTG
59.696
50.000
0.00
0.00
0.00
3.35
219
220
3.674997
TGAGCATGGGTAAAACTGTCTC
58.325
45.455
0.00
0.00
0.00
3.36
224
225
1.616994
GGCCTGAGCATGGGTAAAACT
60.617
52.381
0.00
0.00
42.56
2.66
231
232
3.095163
AGAGGGCCTGAGCATGGG
61.095
66.667
12.95
0.00
42.56
4.00
243
244
5.903198
AGGATTTTATCTCTTCCAGAGGG
57.097
43.478
0.93
0.00
42.54
4.30
245
246
7.256154
GGGAGTAGGATTTTATCTCTTCCAGAG
60.256
44.444
0.00
0.00
43.64
3.35
250
251
5.011227
AGCGGGAGTAGGATTTTATCTCTTC
59.989
44.000
0.00
0.00
0.00
2.87
262
263
0.622136
TACACAGAGCGGGAGTAGGA
59.378
55.000
0.00
0.00
0.00
2.94
271
272
4.389992
CCCAATAGCAATATACACAGAGCG
59.610
45.833
0.00
0.00
0.00
5.03
300
301
9.537192
CAATCCTTCGGTTATACATGTACTTTA
57.463
33.333
7.96
0.00
0.00
1.85
309
310
5.029807
TCATGCAATCCTTCGGTTATACA
57.970
39.130
0.00
0.00
0.00
2.29
395
396
2.420687
CCTTCATGCCCTGTAGGAGAAC
60.421
54.545
0.00
0.00
43.34
3.01
401
402
4.567318
GGCCTTCATGCCCTGTAG
57.433
61.111
0.00
0.00
46.11
2.74
410
411
2.959465
GCCATTAGTAGGGCCTTCAT
57.041
50.000
13.45
0.00
45.41
2.57
417
418
2.155065
CCCTGGGCCATTAGTAGGG
58.845
63.158
6.72
9.65
41.90
3.53
454
455
1.745489
CAAGTAGGCCGTCCCAAGC
60.745
63.158
0.00
0.00
35.39
4.01
457
458
3.006728
CCCAAGTAGGCCGTCCCA
61.007
66.667
0.00
0.00
35.39
4.37
466
467
0.107848
CTGGTTACCGGCCCAAGTAG
60.108
60.000
0.00
0.00
0.00
2.57
476
477
2.047655
TCGCCTTGCTGGTTACCG
60.048
61.111
0.00
0.00
38.35
4.02
480
481
4.269523
TGCCTCGCCTTGCTGGTT
62.270
61.111
0.00
0.00
38.35
3.67
501
502
3.247006
ACTAACGGTGTTATGGCTCAG
57.753
47.619
0.00
0.00
0.00
3.35
504
505
3.516700
AGGTTACTAACGGTGTTATGGCT
59.483
43.478
0.00
0.00
0.00
4.75
523
524
2.443255
ACCTGATGACTGGTTCAAAGGT
59.557
45.455
6.30
6.30
44.80
3.50
533
534
0.524862
GCAGCCAAACCTGATGACTG
59.475
55.000
0.00
0.00
34.77
3.51
534
535
0.111061
TGCAGCCAAACCTGATGACT
59.889
50.000
0.00
0.00
34.77
3.41
537
538
0.459585
GCATGCAGCCAAACCTGATG
60.460
55.000
14.21
0.00
37.23
3.07
548
549
2.637715
GATCGTGTTCGGCATGCAGC
62.638
60.000
21.36
4.17
44.65
5.25
549
550
1.349627
GATCGTGTTCGGCATGCAG
59.650
57.895
21.36
16.69
37.69
4.41
555
556
2.892373
TTTGATTGATCGTGTTCGGC
57.108
45.000
0.00
0.00
37.69
5.54
578
612
7.395772
TGGTATGGACAAAATAGATTGCTTTCA
59.604
33.333
0.00
0.00
33.52
2.69
579
613
7.702348
GTGGTATGGACAAAATAGATTGCTTTC
59.298
37.037
0.00
0.00
33.52
2.62
588
622
5.496556
TCCACTGTGGTATGGACAAAATAG
58.503
41.667
25.15
0.00
40.17
1.73
589
623
5.506730
TCCACTGTGGTATGGACAAAATA
57.493
39.130
25.15
0.00
40.17
1.40
597
631
4.394920
GTGTTTATGTCCACTGTGGTATGG
59.605
45.833
25.15
0.52
39.03
2.74
607
641
7.118101
TCCGTAAGTATTTGTGTTTATGTCCAC
59.882
37.037
0.00
0.00
0.00
4.02
613
647
6.596497
CCACCTCCGTAAGTATTTGTGTTTAT
59.404
38.462
0.00
0.00
0.00
1.40
631
666
4.965200
AGCTCTAAATGATACCACCTCC
57.035
45.455
0.00
0.00
0.00
4.30
632
667
5.988561
CAGAAGCTCTAAATGATACCACCTC
59.011
44.000
0.00
0.00
0.00
3.85
635
670
6.341316
TGACAGAAGCTCTAAATGATACCAC
58.659
40.000
0.00
0.00
0.00
4.16
636
671
6.381133
TCTGACAGAAGCTCTAAATGATACCA
59.619
38.462
1.64
0.00
0.00
3.25
688
723
8.465999
CAGCCAAAATACCAATGTGAATACTAA
58.534
33.333
0.00
0.00
0.00
2.24
830
873
4.397481
AACTTGGCCCTTACGTATAGTC
57.603
45.455
0.00
0.00
0.00
2.59
856
899
1.753649
CCGCTCTTCCATCTCTCTCAA
59.246
52.381
0.00
0.00
0.00
3.02
858
901
0.031994
GCCGCTCTTCCATCTCTCTC
59.968
60.000
0.00
0.00
0.00
3.20
859
902
1.398958
GGCCGCTCTTCCATCTCTCT
61.399
60.000
0.00
0.00
0.00
3.10
874
917
2.176273
CGAGCTGATTTCTGGGCCG
61.176
63.158
0.00
0.00
0.00
6.13
925
968
0.250234
TCGATCTGCACCAAGGAAGG
59.750
55.000
0.00
0.00
0.00
3.46
1122
1166
4.537433
AGGATGAAGAGGCGCGGC
62.537
66.667
27.06
27.06
0.00
6.53
1123
1167
2.279784
GAGGATGAAGAGGCGCGG
60.280
66.667
8.83
0.00
0.00
6.46
1124
1168
2.279784
GGAGGATGAAGAGGCGCG
60.280
66.667
0.00
0.00
0.00
6.86
1125
1169
1.227497
CTGGAGGATGAAGAGGCGC
60.227
63.158
0.00
0.00
0.00
6.53
1220
1264
2.100916
CACGGACGATCTACAGGGAATT
59.899
50.000
0.00
0.00
0.00
2.17
1242
1286
2.894126
ACCAAAACCACTCAACACAACA
59.106
40.909
0.00
0.00
0.00
3.33
1244
1288
2.494073
GGACCAAAACCACTCAACACAA
59.506
45.455
0.00
0.00
0.00
3.33
1247
1291
2.374184
CTGGACCAAAACCACTCAACA
58.626
47.619
0.00
0.00
33.57
3.33
1248
1292
1.067060
GCTGGACCAAAACCACTCAAC
59.933
52.381
0.00
0.00
33.57
3.18
1249
1293
1.064017
AGCTGGACCAAAACCACTCAA
60.064
47.619
0.00
0.00
33.57
3.02
1319
1365
3.368116
GCACGAGACCATTACTTGTACCT
60.368
47.826
0.00
0.00
31.66
3.08
1385
1431
3.756963
GGAGAAAAATCTAGGGCGTGTTT
59.243
43.478
0.00
0.00
0.00
2.83
1462
1508
4.500117
TCGAATGTAAAATACGTAGCACCG
59.500
41.667
0.08
3.67
0.00
4.94
1469
1515
9.120422
GGAAACAAATTCGAATGTAAAATACGT
57.880
29.630
12.25
0.00
39.05
3.57
1470
1516
9.119329
TGGAAACAAATTCGAATGTAAAATACG
57.881
29.630
12.25
0.00
39.05
3.06
1486
1532
9.830975
ATTTAAACTTTGCTACTGGAAACAAAT
57.169
25.926
0.00
0.00
42.06
2.32
1701
1768
4.393062
AGATTGCCATGACAGAACTAAACG
59.607
41.667
0.00
0.00
0.00
3.60
1710
1777
1.843368
ACCCAAGATTGCCATGACAG
58.157
50.000
0.00
0.00
0.00
3.51
1800
1867
7.448469
ACTTTAGACTGCAACACAAAATATCCT
59.552
33.333
0.00
0.00
0.00
3.24
1905
1972
5.242393
GGACATCAATATAATGCAAGCCAGT
59.758
40.000
0.00
0.00
0.00
4.00
1971
2038
5.105837
GCAGAGCATGGAAAGAGAAAATTCT
60.106
40.000
0.00
0.00
41.00
2.40
1979
2046
2.941720
GGTAAGCAGAGCATGGAAAGAG
59.058
50.000
0.00
0.00
0.00
2.85
2160
2235
7.137490
TCTTGACTGCTTTTGATTATCACAG
57.863
36.000
8.42
8.42
0.00
3.66
2219
2294
7.935520
TGCGAATATTATTTTGCTTGTCCATA
58.064
30.769
12.77
0.00
37.00
2.74
2286
2361
1.686587
GCAACCCAAGCAGTAACCTTT
59.313
47.619
0.00
0.00
0.00
3.11
2289
2364
0.313987
GTGCAACCCAAGCAGTAACC
59.686
55.000
0.00
0.00
43.63
2.85
2355
2430
8.697067
CAAGAGACAATATGAACAAGCAAAAAG
58.303
33.333
0.00
0.00
0.00
2.27
2392
2467
4.220602
TCACAAGTCTATGCTGAGCAACTA
59.779
41.667
12.69
0.00
43.62
2.24
2504
2579
5.641209
ACAAGAGACATCATGAACAAGCTAC
59.359
40.000
0.00
0.00
0.00
3.58
2535
2610
1.065126
GGGCATGTGTTCTAGGCTTCT
60.065
52.381
0.00
0.00
0.00
2.85
2536
2611
1.340017
TGGGCATGTGTTCTAGGCTTC
60.340
52.381
0.00
0.00
0.00
3.86
2537
2612
0.698238
TGGGCATGTGTTCTAGGCTT
59.302
50.000
0.00
0.00
0.00
4.35
2538
2613
0.921896
ATGGGCATGTGTTCTAGGCT
59.078
50.000
0.00
0.00
0.00
4.58
2539
2614
1.767759
AATGGGCATGTGTTCTAGGC
58.232
50.000
0.00
0.00
0.00
3.93
2540
2615
4.806640
AAAAATGGGCATGTGTTCTAGG
57.193
40.909
0.00
0.00
0.00
3.02
2541
2616
6.757897
TCTAAAAATGGGCATGTGTTCTAG
57.242
37.500
0.00
0.00
0.00
2.43
2542
2617
7.546358
CAATCTAAAAATGGGCATGTGTTCTA
58.454
34.615
0.00
0.00
0.00
2.10
2608
3607
6.094603
AGGATGAAAATACAATCTGACAGCAC
59.905
38.462
0.00
0.00
0.00
4.40
2644
3643
6.591935
AGTATTTGGTCAACGTCATATGGAT
58.408
36.000
2.13
0.00
0.00
3.41
2655
3654
8.726988
TCATGTTTAAGCTAGTATTTGGTCAAC
58.273
33.333
0.00
0.00
0.00
3.18
2765
3764
8.364142
CCCATTTACTTCAGGACAATACAAAAA
58.636
33.333
0.00
0.00
0.00
1.94
2981
3980
2.904434
ACCCACGAAAAGGAGAGTACAT
59.096
45.455
0.00
0.00
0.00
2.29
2996
3995
1.194547
CAGTCGAAACATTGACCCACG
59.805
52.381
0.00
0.00
35.71
4.94
3033
4032
1.873698
AGAAACGGAGCGCTAAAACA
58.126
45.000
11.50
0.00
0.00
2.83
3122
4129
2.047274
GCGTAGACTTGCCTGCCA
60.047
61.111
0.00
0.00
0.00
4.92
3522
4529
1.163554
CCTGAAGCTCAAGGAAGCAC
58.836
55.000
8.66
0.00
45.00
4.40
3911
4918
6.995511
TCTGTAACATAGGCCACAATTTAC
57.004
37.500
5.01
6.43
0.00
2.01
4065
5072
3.859961
CACGATACTTCTGTGCTTTCGAT
59.140
43.478
0.00
0.00
0.00
3.59
4092
5099
0.335019
GGGGGCCCTCATACAAGTTT
59.665
55.000
24.38
0.00
0.00
2.66
4125
5132
2.671396
ACAGTTTCTTATAGCCGTTGCG
59.329
45.455
0.00
0.00
44.33
4.85
4131
5138
4.192317
CTGGGTCACAGTTTCTTATAGCC
58.808
47.826
0.00
0.00
42.42
3.93
4158
5165
4.780815
TGGAAACATACAGCATAAGAGGG
58.219
43.478
0.00
0.00
33.40
4.30
4435
5442
3.118555
TCAACCTCCTTCTCGTTTGTCAA
60.119
43.478
0.00
0.00
0.00
3.18
4623
5630
0.467384
GCTCTCCAGCTCCAGCAATA
59.533
55.000
0.48
0.00
43.09
1.90
4731
5738
2.586900
GACTTCTCAAGAACGGTCTCG
58.413
52.381
1.89
0.00
43.02
4.04
4758
5765
1.677217
GGGGACTTGCTCATCACAGTC
60.677
57.143
0.00
0.00
34.75
3.51
4779
5786
2.038387
AGAGACGGTTGTGCTTGTTT
57.962
45.000
0.00
0.00
0.00
2.83
4956
5963
1.603455
CATGTTCGGCCCAGTGGTT
60.603
57.895
8.74
0.00
0.00
3.67
5609
6616
7.342026
TCTCTTAACACAGACCAAGCATAGATA
59.658
37.037
0.00
0.00
0.00
1.98
5637
6644
4.283722
AGGAACTGGAATACGAAAGAGTGT
59.716
41.667
0.00
0.00
37.18
3.55
5638
6645
4.822026
AGGAACTGGAATACGAAAGAGTG
58.178
43.478
0.00
0.00
37.18
3.51
5746
6758
3.735746
GCAAAGCAACACTCGCTAAAATT
59.264
39.130
0.00
0.00
39.29
1.82
5755
6767
2.157738
AGGAGATGCAAAGCAACACTC
58.842
47.619
0.00
5.85
43.62
3.51
5833
6845
3.763360
CAGTTGGGGCAATTTATCAGACA
59.237
43.478
0.00
0.00
0.00
3.41
6155
7168
7.899178
AAACGAAAACAATTCAGGACTTTTT
57.101
28.000
0.00
0.00
0.00
1.94
6156
7169
7.600752
TCAAAACGAAAACAATTCAGGACTTTT
59.399
29.630
0.00
0.00
0.00
2.27
6157
7170
7.062956
GTCAAAACGAAAACAATTCAGGACTTT
59.937
33.333
0.00
0.00
0.00
2.66
6193
7206
1.670811
CCATTTATGTGTCCGGAGCAC
59.329
52.381
22.58
22.58
0.00
4.40
6194
7207
1.557371
TCCATTTATGTGTCCGGAGCA
59.443
47.619
3.06
7.92
0.00
4.26
6195
7208
2.325583
TCCATTTATGTGTCCGGAGC
57.674
50.000
3.06
0.69
0.00
4.70
6196
7209
3.873910
ACTTCCATTTATGTGTCCGGAG
58.126
45.455
3.06
0.00
0.00
4.63
6197
7210
3.992943
ACTTCCATTTATGTGTCCGGA
57.007
42.857
0.00
0.00
0.00
5.14
6198
7211
4.006989
TGAACTTCCATTTATGTGTCCGG
58.993
43.478
0.00
0.00
0.00
5.14
6200
7213
5.940470
AGAGTGAACTTCCATTTATGTGTCC
59.060
40.000
0.00
0.00
0.00
4.02
6202
7215
6.998074
TCAAGAGTGAACTTCCATTTATGTGT
59.002
34.615
0.00
0.00
0.00
3.72
6203
7216
7.439157
TCAAGAGTGAACTTCCATTTATGTG
57.561
36.000
0.00
0.00
0.00
3.21
6359
7373
6.440010
TCAAATTCATACCAACAATCACCCAT
59.560
34.615
0.00
0.00
0.00
4.00
6466
7480
3.504520
GGGTTTAAAATCTCCGAGTGCAA
59.495
43.478
0.00
0.00
0.00
4.08
6511
7525
7.547019
CAGTCTCACATTTCTTATGCTTCTGTA
59.453
37.037
0.00
0.00
0.00
2.74
6596
7610
7.088905
CCAAATCACTCTTCTTTTCATCTTGG
58.911
38.462
0.00
0.00
0.00
3.61
6607
7621
1.831580
GCCAGCCAAATCACTCTTCT
58.168
50.000
0.00
0.00
0.00
2.85
6609
7623
0.250901
ACGCCAGCCAAATCACTCTT
60.251
50.000
0.00
0.00
0.00
2.85
6671
7686
5.770162
AGAAAATGCAGTTAAGTAACCAGCT
59.230
36.000
0.00
0.00
38.07
4.24
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.