Multiple sequence alignment - TraesCS3B01G261300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G261300 | chr3B | 100.000 | 2465 | 0 | 0 | 1 | 2465 | 419280272 | 419282736 | 0.000000e+00 | 4553.0 |
1 | TraesCS3B01G261300 | chr3A | 87.307 | 2072 | 184 | 38 | 18 | 2046 | 433426522 | 433428557 | 0.000000e+00 | 2296.0 |
2 | TraesCS3B01G261300 | chr3A | 79.866 | 298 | 38 | 9 | 2175 | 2461 | 433429202 | 433429488 | 5.380000e-47 | 198.0 |
3 | TraesCS3B01G261300 | chr3A | 77.545 | 334 | 42 | 20 | 229 | 537 | 710836299 | 710835974 | 1.170000e-38 | 171.0 |
4 | TraesCS3B01G261300 | chr3A | 81.308 | 107 | 15 | 4 | 231 | 332 | 727915532 | 727915638 | 5.650000e-12 | 82.4 |
5 | TraesCS3B01G261300 | chr3D | 90.115 | 1649 | 110 | 34 | 46 | 1673 | 301772849 | 301771233 | 0.000000e+00 | 2093.0 |
6 | TraesCS3B01G261300 | chr3D | 80.366 | 382 | 61 | 8 | 1675 | 2046 | 497760045 | 497759668 | 6.710000e-71 | 278.0 |
7 | TraesCS3B01G261300 | chr3D | 74.699 | 332 | 53 | 20 | 229 | 536 | 433563263 | 433563587 | 4.310000e-23 | 119.0 |
8 | TraesCS3B01G261300 | chr2D | 85.942 | 313 | 32 | 7 | 2151 | 2459 | 73215898 | 73215594 | 8.500000e-85 | 324.0 |
9 | TraesCS3B01G261300 | chr2D | 80.000 | 380 | 64 | 6 | 1675 | 2046 | 380062668 | 380063043 | 1.120000e-68 | 270.0 |
10 | TraesCS3B01G261300 | chr2D | 78.947 | 323 | 40 | 14 | 244 | 539 | 484477909 | 484477588 | 6.960000e-46 | 195.0 |
11 | TraesCS3B01G261300 | chr2D | 77.636 | 313 | 59 | 7 | 2151 | 2459 | 7731058 | 7730753 | 1.950000e-41 | 180.0 |
12 | TraesCS3B01G261300 | chr6A | 84.566 | 311 | 36 | 9 | 2151 | 2457 | 480315383 | 480315081 | 5.150000e-77 | 298.0 |
13 | TraesCS3B01G261300 | chr4B | 80.475 | 379 | 61 | 5 | 1676 | 2046 | 24052244 | 24052617 | 6.710000e-71 | 278.0 |
14 | TraesCS3B01G261300 | chr5B | 88.546 | 227 | 26 | 0 | 1120 | 1346 | 36602520 | 36602294 | 2.410000e-70 | 276.0 |
15 | TraesCS3B01G261300 | chr5B | 83.843 | 229 | 34 | 3 | 1120 | 1346 | 37046654 | 37046881 | 5.340000e-52 | 215.0 |
16 | TraesCS3B01G261300 | chr5B | 84.286 | 210 | 31 | 2 | 1138 | 1346 | 36891386 | 36891594 | 1.160000e-48 | 204.0 |
17 | TraesCS3B01G261300 | chr5B | 77.830 | 212 | 44 | 2 | 2251 | 2459 | 670248926 | 670248715 | 7.160000e-26 | 128.0 |
18 | TraesCS3B01G261300 | chrUn | 80.488 | 369 | 63 | 4 | 1687 | 2046 | 111150659 | 111150291 | 8.680000e-70 | 274.0 |
19 | TraesCS3B01G261300 | chrUn | 76.923 | 182 | 38 | 3 | 2272 | 2450 | 263448264 | 263448084 | 1.560000e-17 | 100.0 |
20 | TraesCS3B01G261300 | chrUn | 76.923 | 182 | 38 | 3 | 2272 | 2450 | 268147506 | 268147326 | 1.560000e-17 | 100.0 |
21 | TraesCS3B01G261300 | chrUn | 94.286 | 35 | 2 | 0 | 509 | 543 | 38014694 | 38014660 | 1.000000e-03 | 54.7 |
22 | TraesCS3B01G261300 | chr7A | 80.435 | 368 | 61 | 5 | 1687 | 2046 | 39240996 | 39241360 | 1.120000e-68 | 270.0 |
23 | TraesCS3B01G261300 | chr7A | 76.655 | 287 | 42 | 13 | 229 | 492 | 112169623 | 112169907 | 4.280000e-28 | 135.0 |
24 | TraesCS3B01G261300 | chr5A | 87.773 | 229 | 24 | 3 | 1120 | 1346 | 30634376 | 30634602 | 5.230000e-67 | 265.0 |
25 | TraesCS3B01G261300 | chr5A | 79.310 | 348 | 65 | 2 | 1698 | 2038 | 290729967 | 290730314 | 1.140000e-58 | 237.0 |
26 | TraesCS3B01G261300 | chr5A | 79.331 | 329 | 38 | 20 | 230 | 536 | 656051543 | 656051223 | 1.160000e-48 | 204.0 |
27 | TraesCS3B01G261300 | chr5A | 86.339 | 183 | 24 | 1 | 355 | 537 | 415411152 | 415410971 | 5.380000e-47 | 198.0 |
28 | TraesCS3B01G261300 | chr5A | 83.333 | 210 | 33 | 2 | 1138 | 1346 | 30659923 | 30660131 | 2.500000e-45 | 193.0 |
29 | TraesCS3B01G261300 | chr5A | 76.506 | 332 | 52 | 16 | 231 | 537 | 295878146 | 295878476 | 9.130000e-35 | 158.0 |
30 | TraesCS3B01G261300 | chr5A | 80.800 | 125 | 12 | 8 | 414 | 536 | 310043364 | 310043478 | 1.210000e-13 | 87.9 |
31 | TraesCS3B01G261300 | chr1A | 79.781 | 366 | 66 | 4 | 1687 | 2044 | 403133617 | 403133252 | 2.430000e-65 | 259.0 |
32 | TraesCS3B01G261300 | chr1A | 79.620 | 368 | 67 | 3 | 1687 | 2046 | 554013663 | 554014030 | 8.750000e-65 | 257.0 |
33 | TraesCS3B01G261300 | chr7B | 78.590 | 383 | 68 | 8 | 1673 | 2046 | 595711089 | 595711466 | 8.810000e-60 | 241.0 |
34 | TraesCS3B01G261300 | chr5D | 84.286 | 210 | 31 | 2 | 1138 | 1346 | 42086921 | 42087129 | 1.160000e-48 | 204.0 |
35 | TraesCS3B01G261300 | chr5D | 84.286 | 210 | 31 | 2 | 1138 | 1346 | 42205818 | 42206026 | 1.160000e-48 | 204.0 |
36 | TraesCS3B01G261300 | chr5D | 78.866 | 194 | 25 | 9 | 356 | 546 | 72877730 | 72877910 | 1.550000e-22 | 117.0 |
37 | TraesCS3B01G261300 | chr7D | 77.812 | 329 | 49 | 14 | 231 | 541 | 616253442 | 616253764 | 5.420000e-42 | 182.0 |
38 | TraesCS3B01G261300 | chr7D | 85.366 | 123 | 17 | 1 | 416 | 537 | 582057993 | 582058115 | 2.570000e-25 | 126.0 |
39 | TraesCS3B01G261300 | chr6D | 75.362 | 345 | 53 | 18 | 224 | 537 | 460563739 | 460563396 | 1.190000e-28 | 137.0 |
40 | TraesCS3B01G261300 | chr4A | 74.815 | 270 | 39 | 14 | 228 | 469 | 665145022 | 665144754 | 7.260000e-16 | 95.3 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G261300 | chr3B | 419280272 | 419282736 | 2464 | False | 4553 | 4553 | 100.0000 | 1 | 2465 | 1 | chr3B.!!$F1 | 2464 |
1 | TraesCS3B01G261300 | chr3A | 433426522 | 433429488 | 2966 | False | 1247 | 2296 | 83.5865 | 18 | 2461 | 2 | chr3A.!!$F2 | 2443 |
2 | TraesCS3B01G261300 | chr3D | 301771233 | 301772849 | 1616 | True | 2093 | 2093 | 90.1150 | 46 | 1673 | 1 | chr3D.!!$R1 | 1627 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
773 | 794 | 0.027586 | GCGCAATTACGTGTCCCATC | 59.972 | 55.0 | 0.3 | 0.0 | 34.88 | 3.51 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2010 | 2054 | 0.036294 | AAACTTAGAGCGTCCCTGCC | 60.036 | 55.0 | 0.0 | 0.0 | 34.65 | 4.85 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
96 | 97 | 6.806739 | CAGACTGTAGAACAATCATTGTACGA | 59.193 | 38.462 | 2.67 | 0.00 | 44.59 | 3.43 |
204 | 207 | 3.629398 | AGAATGACATTTTGGATCTCGGC | 59.371 | 43.478 | 1.39 | 0.00 | 0.00 | 5.54 |
271 | 274 | 3.895232 | AGGATGTGAGGTGTATGTGTC | 57.105 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
273 | 276 | 3.196469 | AGGATGTGAGGTGTATGTGTCTG | 59.804 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
274 | 277 | 3.525537 | GATGTGAGGTGTATGTGTCTGG | 58.474 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
304 | 307 | 6.094742 | TCAGAATAAAATACAATGAAGCGGCA | 59.905 | 34.615 | 1.45 | 0.00 | 0.00 | 5.69 |
312 | 315 | 1.745087 | CAATGAAGCGGCAACCTGTAT | 59.255 | 47.619 | 1.45 | 0.00 | 0.00 | 2.29 |
341 | 358 | 7.502120 | AGACAAATTCATGGTAGTATCATGC | 57.498 | 36.000 | 17.21 | 3.22 | 41.11 | 4.06 |
342 | 359 | 7.056006 | AGACAAATTCATGGTAGTATCATGCA | 58.944 | 34.615 | 17.21 | 8.28 | 41.11 | 3.96 |
345 | 362 | 8.698210 | ACAAATTCATGGTAGTATCATGCATTT | 58.302 | 29.630 | 21.28 | 21.28 | 43.64 | 2.32 |
355 | 372 | 7.229506 | GGTAGTATCATGCATTTAAAAGCCTCT | 59.770 | 37.037 | 12.50 | 5.15 | 0.00 | 3.69 |
356 | 373 | 7.651027 | AGTATCATGCATTTAAAAGCCTCTT | 57.349 | 32.000 | 12.50 | 0.00 | 0.00 | 2.85 |
387 | 406 | 5.872617 | CACAACCCTCATCTCAACGTATTTA | 59.127 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
431 | 450 | 8.896744 | ACTTATGTATTATGCCATCATGTATGC | 58.103 | 33.333 | 0.00 | 0.00 | 33.92 | 3.14 |
433 | 452 | 4.635324 | TGTATTATGCCATCATGTATGCCG | 59.365 | 41.667 | 0.00 | 0.00 | 33.92 | 5.69 |
505 | 524 | 2.636768 | GCATTTTGCGTTTAGAGGCT | 57.363 | 45.000 | 0.00 | 0.00 | 37.54 | 4.58 |
507 | 526 | 3.317150 | GCATTTTGCGTTTAGAGGCTTT | 58.683 | 40.909 | 0.00 | 0.00 | 37.54 | 3.51 |
552 | 571 | 7.237920 | AGCAATTTCAGTTTCAAATGTCAAC | 57.762 | 32.000 | 0.00 | 0.00 | 0.00 | 3.18 |
593 | 612 | 0.389817 | TCTGACGGCATGTGCACTAC | 60.390 | 55.000 | 19.41 | 7.09 | 44.36 | 2.73 |
694 | 714 | 5.592282 | TGTCAATTCACAAACTGGAGCTAAA | 59.408 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
699 | 719 | 8.490355 | CAATTCACAAACTGGAGCTAAATTTTC | 58.510 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
711 | 731 | 8.908903 | TGGAGCTAAATTTTCTTTCACAAACTA | 58.091 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
726 | 746 | 3.119316 | ACAAACTAGTGCTGAGGAGATCG | 60.119 | 47.826 | 11.26 | 0.00 | 0.00 | 3.69 |
771 | 792 | 2.384309 | CGCGCAATTACGTGTCCCA | 61.384 | 57.895 | 8.75 | 0.00 | 38.69 | 4.37 |
772 | 793 | 1.701545 | CGCGCAATTACGTGTCCCAT | 61.702 | 55.000 | 8.75 | 0.00 | 38.69 | 4.00 |
773 | 794 | 0.027586 | GCGCAATTACGTGTCCCATC | 59.972 | 55.000 | 0.30 | 0.00 | 34.88 | 3.51 |
774 | 795 | 1.364721 | CGCAATTACGTGTCCCATCA | 58.635 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
844 | 866 | 2.013400 | ACAATTGAACACACGTGAGCA | 58.987 | 42.857 | 25.01 | 11.15 | 0.00 | 4.26 |
886 | 908 | 1.078848 | ATCCAGCAAGCGGAGTCAC | 60.079 | 57.895 | 10.40 | 0.00 | 35.56 | 3.67 |
1017 | 1039 | 1.075542 | TCACAACGATTAGCAAGCGG | 58.924 | 50.000 | 10.38 | 0.00 | 45.98 | 5.52 |
1018 | 1040 | 1.075542 | CACAACGATTAGCAAGCGGA | 58.924 | 50.000 | 10.38 | 0.00 | 45.98 | 5.54 |
1019 | 1041 | 1.061131 | CACAACGATTAGCAAGCGGAG | 59.939 | 52.381 | 10.38 | 5.61 | 45.98 | 4.63 |
1020 | 1042 | 1.337823 | ACAACGATTAGCAAGCGGAGT | 60.338 | 47.619 | 10.38 | 6.10 | 45.98 | 3.85 |
1021 | 1043 | 2.094390 | ACAACGATTAGCAAGCGGAGTA | 60.094 | 45.455 | 10.38 | 0.00 | 45.98 | 2.59 |
1022 | 1044 | 2.493713 | ACGATTAGCAAGCGGAGTAG | 57.506 | 50.000 | 10.38 | 0.00 | 45.98 | 2.57 |
1023 | 1045 | 1.132588 | CGATTAGCAAGCGGAGTAGC | 58.867 | 55.000 | 0.00 | 0.00 | 36.51 | 3.58 |
1047 | 1073 | 2.545526 | ACCATCAATTTCTAGCGCATCG | 59.454 | 45.455 | 11.47 | 0.00 | 0.00 | 3.84 |
1068 | 1094 | 3.871006 | CGATCCATCCATCAAACTTCGAA | 59.129 | 43.478 | 0.00 | 0.00 | 0.00 | 3.71 |
1069 | 1095 | 4.260375 | CGATCCATCCATCAAACTTCGAAC | 60.260 | 45.833 | 0.00 | 0.00 | 0.00 | 3.95 |
1070 | 1096 | 4.014569 | TCCATCCATCAAACTTCGAACA | 57.985 | 40.909 | 0.00 | 0.00 | 0.00 | 3.18 |
1091 | 1117 | 4.190001 | CACAAGCATTCTATCTGACAGCT | 58.810 | 43.478 | 0.00 | 0.00 | 36.85 | 4.24 |
1157 | 1183 | 2.280797 | GTGCAGTGCGGGACAAGA | 60.281 | 61.111 | 11.20 | 0.00 | 0.00 | 3.02 |
1429 | 1455 | 3.801698 | CTGTGTCATGTAATCTGGGAGG | 58.198 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1468 | 1494 | 3.120477 | TCAGCGTGTGTTTAATAAAGCGG | 60.120 | 43.478 | 0.00 | 0.00 | 0.00 | 5.52 |
1483 | 1509 | 1.947146 | GCGGGGTTTTTGTTGTCGC | 60.947 | 57.895 | 0.00 | 0.00 | 35.12 | 5.19 |
1517 | 1543 | 2.202703 | CGCCGTGGCTGTACCTAC | 60.203 | 66.667 | 9.55 | 0.00 | 40.22 | 3.18 |
1535 | 1561 | 5.100259 | ACCTACTATTTGTTCGTCGATGTG | 58.900 | 41.667 | 4.21 | 0.00 | 0.00 | 3.21 |
1579 | 1605 | 1.480954 | CCCCGAGTGCTGTGTAATAGT | 59.519 | 52.381 | 0.00 | 0.00 | 0.00 | 2.12 |
1624 | 1650 | 8.788806 | TCTTTTCGGAAAATGCTCTTTATGTAA | 58.211 | 29.630 | 15.64 | 0.00 | 0.00 | 2.41 |
1648 | 1674 | 3.739830 | GCTCCCTCCGATCTTCTCTTTTC | 60.740 | 52.174 | 0.00 | 0.00 | 0.00 | 2.29 |
1660 | 1686 | 7.806960 | CGATCTTCTCTTTTCTGAAAAATGCTT | 59.193 | 33.333 | 15.67 | 0.04 | 34.00 | 3.91 |
1734 | 1772 | 9.405587 | CAACTTAAAATGTCCGTACAATCATTT | 57.594 | 29.630 | 11.00 | 11.00 | 39.58 | 2.32 |
1745 | 1783 | 9.698617 | GTCCGTACAATCATTTATTACAAACTC | 57.301 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
1746 | 1784 | 8.885722 | TCCGTACAATCATTTATTACAAACTCC | 58.114 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
1748 | 1786 | 7.372396 | CGTACAATCATTTATTACAAACTCCGC | 59.628 | 37.037 | 0.00 | 0.00 | 0.00 | 5.54 |
1752 | 1790 | 5.004448 | TCATTTATTACAAACTCCGCCACA | 58.996 | 37.500 | 0.00 | 0.00 | 0.00 | 4.17 |
1755 | 1793 | 1.588674 | TTACAAACTCCGCCACACAG | 58.411 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
1757 | 1795 | 2.113139 | AAACTCCGCCACACAGGG | 59.887 | 61.111 | 0.00 | 0.00 | 38.09 | 4.45 |
1781 | 1819 | 6.128822 | GGCGGAACAGAATGAAAAAGAAAATC | 60.129 | 38.462 | 0.00 | 0.00 | 39.69 | 2.17 |
1821 | 1862 | 3.371965 | ACTAAACTTATCTCGGGAGCCA | 58.628 | 45.455 | 0.00 | 0.00 | 0.00 | 4.75 |
1823 | 1864 | 0.831307 | AACTTATCTCGGGAGCCACC | 59.169 | 55.000 | 0.00 | 0.00 | 38.08 | 4.61 |
1853 | 1897 | 5.045872 | GCCCTGTTGATCTTTGAAATATGC | 58.954 | 41.667 | 0.00 | 0.00 | 0.00 | 3.14 |
1876 | 1920 | 5.867716 | GCAAATTCAACAGCATCTTTGAGAT | 59.132 | 36.000 | 0.00 | 0.00 | 34.74 | 2.75 |
1883 | 1927 | 8.791327 | TCAACAGCATCTTTGAGATATTTACA | 57.209 | 30.769 | 0.00 | 0.00 | 32.12 | 2.41 |
1886 | 1930 | 8.565896 | ACAGCATCTTTGAGATATTTACAACA | 57.434 | 30.769 | 0.00 | 0.00 | 32.12 | 3.33 |
1887 | 1931 | 9.182214 | ACAGCATCTTTGAGATATTTACAACAT | 57.818 | 29.630 | 0.00 | 0.00 | 32.12 | 2.71 |
1910 | 1954 | 6.152638 | TCCTCCTTTAAATCAACAAGGGAT | 57.847 | 37.500 | 0.00 | 0.00 | 38.13 | 3.85 |
1914 | 1958 | 6.310941 | TCCTTTAAATCAACAAGGGATGACA | 58.689 | 36.000 | 0.00 | 0.00 | 38.13 | 3.58 |
1918 | 1962 | 7.537596 | TTAAATCAACAAGGGATGACATGTT | 57.462 | 32.000 | 0.00 | 0.00 | 36.49 | 2.71 |
1927 | 1971 | 6.664816 | ACAAGGGATGACATGTTCATACAATT | 59.335 | 34.615 | 17.11 | 10.95 | 46.61 | 2.32 |
1937 | 1981 | 7.092716 | ACATGTTCATACAATTTCTTCCAAGC | 58.907 | 34.615 | 0.00 | 0.00 | 37.91 | 4.01 |
1941 | 1985 | 6.647334 | TCATACAATTTCTTCCAAGCACAA | 57.353 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
1945 | 1989 | 4.060205 | CAATTTCTTCCAAGCACAAAGGG | 58.940 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
1946 | 1990 | 1.039856 | TTCTTCCAAGCACAAAGGGC | 58.960 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
1947 | 1991 | 0.106268 | TCTTCCAAGCACAAAGGGCA | 60.106 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
1951 | 1995 | 0.530431 | CCAAGCACAAAGGGCACAAC | 60.530 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1957 | 2001 | 2.192861 | CAAAGGGCACAACGGAGCA | 61.193 | 57.895 | 0.00 | 0.00 | 31.64 | 4.26 |
1962 | 2006 | 1.523154 | GGGCACAACGGAGCAATCAA | 61.523 | 55.000 | 0.00 | 0.00 | 31.64 | 2.57 |
1966 | 2010 | 3.059166 | GCACAACGGAGCAATCAATTTT | 58.941 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
1967 | 2011 | 3.494251 | GCACAACGGAGCAATCAATTTTT | 59.506 | 39.130 | 0.00 | 0.00 | 0.00 | 1.94 |
1968 | 2012 | 4.683781 | GCACAACGGAGCAATCAATTTTTA | 59.316 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
1969 | 2013 | 5.176590 | GCACAACGGAGCAATCAATTTTTAA | 59.823 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
1970 | 2014 | 6.292596 | GCACAACGGAGCAATCAATTTTTAAA | 60.293 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
1971 | 2015 | 7.625553 | CACAACGGAGCAATCAATTTTTAAAA | 58.374 | 30.769 | 0.00 | 0.00 | 0.00 | 1.52 |
1972 | 2016 | 8.281893 | CACAACGGAGCAATCAATTTTTAAAAT | 58.718 | 29.630 | 0.55 | 0.00 | 0.00 | 1.82 |
1973 | 2017 | 9.482627 | ACAACGGAGCAATCAATTTTTAAAATA | 57.517 | 25.926 | 3.17 | 0.00 | 0.00 | 1.40 |
1976 | 2020 | 9.482627 | ACGGAGCAATCAATTTTTAAAATAACA | 57.517 | 25.926 | 3.17 | 0.00 | 0.00 | 2.41 |
1977 | 2021 | 9.956797 | CGGAGCAATCAATTTTTAAAATAACAG | 57.043 | 29.630 | 3.17 | 0.00 | 0.00 | 3.16 |
1994 | 2038 | 9.871238 | AAAATAACAGATACGTCTAGTGTCATT | 57.129 | 29.630 | 0.00 | 0.00 | 42.57 | 2.57 |
1995 | 2039 | 9.871238 | AAATAACAGATACGTCTAGTGTCATTT | 57.129 | 29.630 | 0.00 | 0.00 | 42.57 | 2.32 |
1996 | 2040 | 9.517609 | AATAACAGATACGTCTAGTGTCATTTC | 57.482 | 33.333 | 0.00 | 0.00 | 42.57 | 2.17 |
1997 | 2041 | 6.510879 | ACAGATACGTCTAGTGTCATTTCA | 57.489 | 37.500 | 0.00 | 0.00 | 42.57 | 2.69 |
1998 | 2042 | 6.920817 | ACAGATACGTCTAGTGTCATTTCAA | 58.079 | 36.000 | 0.00 | 0.00 | 42.57 | 2.69 |
1999 | 2043 | 7.548097 | ACAGATACGTCTAGTGTCATTTCAAT | 58.452 | 34.615 | 0.00 | 0.00 | 42.57 | 2.57 |
2000 | 2044 | 8.683615 | ACAGATACGTCTAGTGTCATTTCAATA | 58.316 | 33.333 | 0.00 | 0.00 | 42.57 | 1.90 |
2001 | 2045 | 9.684448 | CAGATACGTCTAGTGTCATTTCAATAT | 57.316 | 33.333 | 0.00 | 0.00 | 42.57 | 1.28 |
2005 | 2049 | 8.858003 | ACGTCTAGTGTCATTTCAATATACAG | 57.142 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
2006 | 2050 | 7.921214 | ACGTCTAGTGTCATTTCAATATACAGG | 59.079 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
2007 | 2051 | 7.096023 | CGTCTAGTGTCATTTCAATATACAGGC | 60.096 | 40.741 | 0.00 | 0.00 | 0.00 | 4.85 |
2008 | 2052 | 7.171678 | GTCTAGTGTCATTTCAATATACAGGCC | 59.828 | 40.741 | 0.00 | 0.00 | 0.00 | 5.19 |
2009 | 2053 | 5.133221 | AGTGTCATTTCAATATACAGGCCC | 58.867 | 41.667 | 0.00 | 0.00 | 0.00 | 5.80 |
2010 | 2054 | 4.024048 | GTGTCATTTCAATATACAGGCCCG | 60.024 | 45.833 | 0.00 | 0.00 | 0.00 | 6.13 |
2011 | 2055 | 3.502211 | GTCATTTCAATATACAGGCCCGG | 59.498 | 47.826 | 0.00 | 0.00 | 0.00 | 5.73 |
2012 | 2056 | 1.975660 | TTTCAATATACAGGCCCGGC | 58.024 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
2013 | 2057 | 0.840617 | TTCAATATACAGGCCCGGCA | 59.159 | 50.000 | 12.58 | 0.00 | 0.00 | 5.69 |
2014 | 2058 | 0.396435 | TCAATATACAGGCCCGGCAG | 59.604 | 55.000 | 12.58 | 5.60 | 0.00 | 4.85 |
2015 | 2059 | 0.606401 | CAATATACAGGCCCGGCAGG | 60.606 | 60.000 | 12.58 | 4.78 | 39.47 | 4.85 |
2025 | 2069 | 3.458163 | CCGGCAGGGACGCTCTAA | 61.458 | 66.667 | 0.00 | 0.00 | 38.47 | 2.10 |
2026 | 2070 | 2.105128 | CGGCAGGGACGCTCTAAG | 59.895 | 66.667 | 0.00 | 0.00 | 0.00 | 2.18 |
2027 | 2071 | 2.711922 | CGGCAGGGACGCTCTAAGT | 61.712 | 63.158 | 0.00 | 0.00 | 0.00 | 2.24 |
2028 | 2072 | 1.597461 | GGCAGGGACGCTCTAAGTT | 59.403 | 57.895 | 0.00 | 0.00 | 0.00 | 2.66 |
2029 | 2073 | 0.036294 | GGCAGGGACGCTCTAAGTTT | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2030 | 2074 | 1.360820 | GCAGGGACGCTCTAAGTTTC | 58.639 | 55.000 | 0.00 | 0.00 | 0.00 | 2.78 |
2031 | 2075 | 1.630148 | CAGGGACGCTCTAAGTTTCG | 58.370 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2032 | 2076 | 0.108756 | AGGGACGCTCTAAGTTTCGC | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
2033 | 2077 | 0.108756 | GGGACGCTCTAAGTTTCGCT | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 4.93 |
2034 | 2078 | 1.672145 | GGGACGCTCTAAGTTTCGCTT | 60.672 | 52.381 | 0.00 | 0.00 | 41.05 | 4.68 |
2035 | 2079 | 1.654602 | GGACGCTCTAAGTTTCGCTTC | 59.345 | 52.381 | 0.00 | 0.00 | 38.57 | 3.86 |
2036 | 2080 | 1.654602 | GACGCTCTAAGTTTCGCTTCC | 59.345 | 52.381 | 0.00 | 0.00 | 38.57 | 3.46 |
2037 | 2081 | 1.272769 | ACGCTCTAAGTTTCGCTTCCT | 59.727 | 47.619 | 0.00 | 0.00 | 38.57 | 3.36 |
2038 | 2082 | 1.656095 | CGCTCTAAGTTTCGCTTCCTG | 59.344 | 52.381 | 0.00 | 0.00 | 38.57 | 3.86 |
2039 | 2083 | 2.671351 | CGCTCTAAGTTTCGCTTCCTGA | 60.671 | 50.000 | 0.00 | 0.00 | 38.57 | 3.86 |
2040 | 2084 | 2.668945 | GCTCTAAGTTTCGCTTCCTGAC | 59.331 | 50.000 | 0.00 | 0.00 | 38.57 | 3.51 |
2041 | 2085 | 3.861131 | GCTCTAAGTTTCGCTTCCTGACA | 60.861 | 47.826 | 0.00 | 0.00 | 38.57 | 3.58 |
2042 | 2086 | 3.650139 | TCTAAGTTTCGCTTCCTGACAC | 58.350 | 45.455 | 0.00 | 0.00 | 38.57 | 3.67 |
2043 | 2087 | 2.622064 | AAGTTTCGCTTCCTGACACT | 57.378 | 45.000 | 0.00 | 0.00 | 30.06 | 3.55 |
2044 | 2088 | 3.746045 | AAGTTTCGCTTCCTGACACTA | 57.254 | 42.857 | 0.00 | 0.00 | 30.06 | 2.74 |
2045 | 2089 | 3.963428 | AGTTTCGCTTCCTGACACTAT | 57.037 | 42.857 | 0.00 | 0.00 | 0.00 | 2.12 |
2046 | 2090 | 4.273148 | AGTTTCGCTTCCTGACACTATT | 57.727 | 40.909 | 0.00 | 0.00 | 0.00 | 1.73 |
2047 | 2091 | 4.642429 | AGTTTCGCTTCCTGACACTATTT | 58.358 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
2048 | 2092 | 5.063880 | AGTTTCGCTTCCTGACACTATTTT | 58.936 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
2049 | 2093 | 5.531287 | AGTTTCGCTTCCTGACACTATTTTT | 59.469 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
2057 | 2101 | 9.129209 | GCTTCCTGACACTATTTTTAAAATGAC | 57.871 | 33.333 | 12.62 | 0.00 | 0.00 | 3.06 |
2059 | 2103 | 8.610248 | TCCTGACACTATTTTTAAAATGACGA | 57.390 | 30.769 | 12.62 | 0.00 | 0.00 | 4.20 |
2060 | 2104 | 9.058174 | TCCTGACACTATTTTTAAAATGACGAA | 57.942 | 29.630 | 12.62 | 0.00 | 0.00 | 3.85 |
2061 | 2105 | 9.840427 | CCTGACACTATTTTTAAAATGACGAAT | 57.160 | 29.630 | 12.62 | 0.00 | 0.00 | 3.34 |
2089 | 2133 | 6.647067 | GTCTAGTGTCATTCCAATATACAGGC | 59.353 | 42.308 | 0.00 | 0.00 | 0.00 | 4.85 |
2094 | 2138 | 2.922740 | TTCCAATATACAGGCCCGAC | 57.077 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2097 | 2141 | 1.691976 | CCAATATACAGGCCCGACAGA | 59.308 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
2108 | 2152 | 1.630148 | CCCGACAGAAACGCTCTAAG | 58.370 | 55.000 | 0.00 | 0.00 | 31.12 | 2.18 |
2111 | 2155 | 3.057734 | CCGACAGAAACGCTCTAAGTTT | 58.942 | 45.455 | 0.00 | 0.00 | 43.60 | 2.66 |
2117 | 2161 | 4.129878 | GAAACGCTCTAAGTTTCGCTTT | 57.870 | 40.909 | 6.14 | 0.00 | 44.99 | 3.51 |
2123 | 2168 | 3.741344 | GCTCTAAGTTTCGCTTTCTGACA | 59.259 | 43.478 | 0.00 | 0.00 | 38.57 | 3.58 |
2133 | 2178 | 4.174009 | TCGCTTTCTGACACTATAGCAAC | 58.826 | 43.478 | 0.00 | 0.00 | 0.00 | 4.17 |
2138 | 2183 | 6.360370 | TTTCTGACACTATAGCAACCTCTT | 57.640 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
2142 | 2187 | 8.941995 | TCTGACACTATAGCAACCTCTTATAT | 57.058 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
2148 | 2193 | 9.737427 | CACTATAGCAACCTCTTATATAATCGG | 57.263 | 37.037 | 0.00 | 2.58 | 0.00 | 4.18 |
2172 | 2738 | 8.244802 | CGGTATTAATCTTGTAGACCTATGAGG | 58.755 | 40.741 | 0.00 | 0.00 | 42.49 | 3.86 |
2202 | 2845 | 4.526970 | TGCCAATGAATAACCTTCCTCTC | 58.473 | 43.478 | 0.00 | 0.00 | 0.00 | 3.20 |
2216 | 2859 | 6.525629 | ACCTTCCTCTCAATATTAATGGTCG | 58.474 | 40.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2226 | 2869 | 7.648142 | TCAATATTAATGGTCGGCTGAAATTC | 58.352 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
2229 | 2872 | 1.463674 | ATGGTCGGCTGAAATTCCAC | 58.536 | 50.000 | 4.81 | 0.00 | 0.00 | 4.02 |
2233 | 2876 | 0.984230 | TCGGCTGAAATTCCACCTCT | 59.016 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2234 | 2877 | 1.089920 | CGGCTGAAATTCCACCTCTG | 58.910 | 55.000 | 0.00 | 0.00 | 0.00 | 3.35 |
2238 | 2881 | 3.347216 | GCTGAAATTCCACCTCTGCTTA | 58.653 | 45.455 | 0.00 | 0.00 | 32.93 | 3.09 |
2239 | 2882 | 3.376546 | GCTGAAATTCCACCTCTGCTTAG | 59.623 | 47.826 | 0.00 | 0.00 | 32.93 | 2.18 |
2240 | 2883 | 3.347216 | TGAAATTCCACCTCTGCTTAGC | 58.653 | 45.455 | 0.00 | 0.00 | 0.00 | 3.09 |
2242 | 2885 | 3.728385 | AATTCCACCTCTGCTTAGCTT | 57.272 | 42.857 | 5.60 | 0.00 | 0.00 | 3.74 |
2244 | 2887 | 4.844349 | ATTCCACCTCTGCTTAGCTTTA | 57.156 | 40.909 | 5.60 | 0.00 | 0.00 | 1.85 |
2245 | 2888 | 3.611766 | TCCACCTCTGCTTAGCTTTAC | 57.388 | 47.619 | 5.60 | 0.00 | 0.00 | 2.01 |
2248 | 2891 | 4.041691 | TCCACCTCTGCTTAGCTTTACTTT | 59.958 | 41.667 | 5.60 | 0.00 | 0.00 | 2.66 |
2249 | 2892 | 5.247564 | TCCACCTCTGCTTAGCTTTACTTTA | 59.752 | 40.000 | 5.60 | 0.00 | 0.00 | 1.85 |
2250 | 2893 | 5.351740 | CCACCTCTGCTTAGCTTTACTTTAC | 59.648 | 44.000 | 5.60 | 0.00 | 0.00 | 2.01 |
2251 | 2894 | 5.351740 | CACCTCTGCTTAGCTTTACTTTACC | 59.648 | 44.000 | 5.60 | 0.00 | 0.00 | 2.85 |
2252 | 2895 | 5.248705 | ACCTCTGCTTAGCTTTACTTTACCT | 59.751 | 40.000 | 5.60 | 0.00 | 0.00 | 3.08 |
2253 | 2896 | 6.174049 | CCTCTGCTTAGCTTTACTTTACCTT | 58.826 | 40.000 | 5.60 | 0.00 | 0.00 | 3.50 |
2254 | 2897 | 6.655425 | CCTCTGCTTAGCTTTACTTTACCTTT | 59.345 | 38.462 | 5.60 | 0.00 | 0.00 | 3.11 |
2255 | 2898 | 7.822822 | CCTCTGCTTAGCTTTACTTTACCTTTA | 59.177 | 37.037 | 5.60 | 0.00 | 0.00 | 1.85 |
2256 | 2899 | 9.384764 | CTCTGCTTAGCTTTACTTTACCTTTAT | 57.615 | 33.333 | 5.60 | 0.00 | 0.00 | 1.40 |
2257 | 2900 | 9.734984 | TCTGCTTAGCTTTACTTTACCTTTATT | 57.265 | 29.630 | 5.60 | 0.00 | 0.00 | 1.40 |
2258 | 2901 | 9.774742 | CTGCTTAGCTTTACTTTACCTTTATTG | 57.225 | 33.333 | 5.60 | 0.00 | 0.00 | 1.90 |
2259 | 2902 | 8.241367 | TGCTTAGCTTTACTTTACCTTTATTGC | 58.759 | 33.333 | 5.60 | 0.00 | 0.00 | 3.56 |
2260 | 2903 | 8.241367 | GCTTAGCTTTACTTTACCTTTATTGCA | 58.759 | 33.333 | 0.00 | 0.00 | 0.00 | 4.08 |
2261 | 2904 | 9.556030 | CTTAGCTTTACTTTACCTTTATTGCAC | 57.444 | 33.333 | 0.00 | 0.00 | 0.00 | 4.57 |
2262 | 2905 | 7.519032 | AGCTTTACTTTACCTTTATTGCACA | 57.481 | 32.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2268 | 2911 | 7.759489 | ACTTTACCTTTATTGCACATCTTCA | 57.241 | 32.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2270 | 2913 | 7.230510 | ACTTTACCTTTATTGCACATCTTCACA | 59.769 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
2302 | 2945 | 4.335874 | AGCATGACAAGATGAGAAAGATGC | 59.664 | 41.667 | 0.00 | 0.00 | 35.09 | 3.91 |
2303 | 2946 | 4.335874 | GCATGACAAGATGAGAAAGATGCT | 59.664 | 41.667 | 0.00 | 0.00 | 32.72 | 3.79 |
2310 | 2953 | 8.571461 | ACAAGATGAGAAAGATGCTCAATAAA | 57.429 | 30.769 | 0.00 | 0.00 | 44.71 | 1.40 |
2311 | 2954 | 8.675504 | ACAAGATGAGAAAGATGCTCAATAAAG | 58.324 | 33.333 | 0.00 | 0.00 | 44.71 | 1.85 |
2314 | 2957 | 9.240734 | AGATGAGAAAGATGCTCAATAAAGTTT | 57.759 | 29.630 | 0.00 | 0.00 | 44.71 | 2.66 |
2326 | 2969 | 7.094805 | TGCTCAATAAAGTTTTACGAAGCTCAT | 60.095 | 33.333 | 0.00 | 0.00 | 30.84 | 2.90 |
2334 | 2977 | 9.485206 | AAAGTTTTACGAAGCTCATTAAGTCTA | 57.515 | 29.630 | 0.00 | 0.00 | 0.00 | 2.59 |
2344 | 2987 | 8.900983 | AAGCTCATTAAGTCTAAGATGGATTC | 57.099 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
2345 | 2988 | 7.449247 | AGCTCATTAAGTCTAAGATGGATTCC | 58.551 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
2349 | 2992 | 8.265055 | TCATTAAGTCTAAGATGGATTCCGTTT | 58.735 | 33.333 | 0.00 | 0.00 | 0.00 | 3.60 |
2356 | 2999 | 4.152284 | AGATGGATTCCGTTTCCTTACC | 57.848 | 45.455 | 0.00 | 0.00 | 34.17 | 2.85 |
2367 | 3010 | 5.239963 | TCCGTTTCCTTACCAAAGATCAAAC | 59.760 | 40.000 | 0.00 | 0.00 | 34.37 | 2.93 |
2375 | 3018 | 7.176690 | TCCTTACCAAAGATCAAACCATTTCTC | 59.823 | 37.037 | 0.00 | 0.00 | 34.37 | 2.87 |
2380 | 3023 | 7.033791 | CCAAAGATCAAACCATTTCTCAGATG | 58.966 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
2381 | 3024 | 5.831702 | AGATCAAACCATTTCTCAGATGC | 57.168 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
2382 | 3025 | 5.507637 | AGATCAAACCATTTCTCAGATGCT | 58.492 | 37.500 | 0.00 | 0.00 | 0.00 | 3.79 |
2390 | 3033 | 6.479884 | ACCATTTCTCAGATGCTAAACTCTT | 58.520 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
2391 | 3034 | 6.597280 | ACCATTTCTCAGATGCTAAACTCTTC | 59.403 | 38.462 | 0.00 | 0.00 | 0.00 | 2.87 |
2392 | 3035 | 6.238049 | CCATTTCTCAGATGCTAAACTCTTCG | 60.238 | 42.308 | 0.00 | 0.00 | 0.00 | 3.79 |
2406 | 3049 | 7.905493 | GCTAAACTCTTCGGAACATGAAAATAG | 59.095 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
2410 | 3053 | 7.584987 | ACTCTTCGGAACATGAAAATAGTTTG | 58.415 | 34.615 | 0.00 | 0.00 | 0.00 | 2.93 |
2411 | 3054 | 6.378582 | TCTTCGGAACATGAAAATAGTTTGC | 58.621 | 36.000 | 0.00 | 0.00 | 0.00 | 3.68 |
2413 | 3056 | 5.938322 | TCGGAACATGAAAATAGTTTGCTC | 58.062 | 37.500 | 0.00 | 0.00 | 0.00 | 4.26 |
2414 | 3057 | 4.788100 | CGGAACATGAAAATAGTTTGCTCG | 59.212 | 41.667 | 0.00 | 0.00 | 0.00 | 5.03 |
2416 | 3059 | 5.569059 | GGAACATGAAAATAGTTTGCTCGTG | 59.431 | 40.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2417 | 3060 | 4.475944 | ACATGAAAATAGTTTGCTCGTGC | 58.524 | 39.130 | 0.00 | 1.71 | 40.20 | 5.34 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 6.239217 | TGTGGCTTCAATCATGTAGATACT | 57.761 | 37.500 | 0.00 | 0.00 | 35.39 | 2.12 |
1 | 2 | 7.502120 | AATGTGGCTTCAATCATGTAGATAC | 57.498 | 36.000 | 0.00 | 0.00 | 35.39 | 2.24 |
3 | 4 | 9.445878 | CTATAATGTGGCTTCAATCATGTAGAT | 57.554 | 33.333 | 0.00 | 0.00 | 39.09 | 1.98 |
4 | 5 | 8.650490 | TCTATAATGTGGCTTCAATCATGTAGA | 58.350 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
5 | 6 | 8.837788 | TCTATAATGTGGCTTCAATCATGTAG | 57.162 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
7 | 8 | 9.970553 | ATATCTATAATGTGGCTTCAATCATGT | 57.029 | 29.630 | 0.00 | 0.00 | 0.00 | 3.21 |
14 | 15 | 9.929180 | GAGTTGTATATCTATAATGTGGCTTCA | 57.071 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
15 | 16 | 9.372369 | GGAGTTGTATATCTATAATGTGGCTTC | 57.628 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
16 | 17 | 8.880244 | TGGAGTTGTATATCTATAATGTGGCTT | 58.120 | 33.333 | 0.00 | 0.00 | 0.00 | 4.35 |
48 | 49 | 5.471116 | TGGTGCTTCAATCATGTAGATATGC | 59.529 | 40.000 | 0.00 | 0.00 | 35.39 | 3.14 |
190 | 193 | 2.806945 | TGAAGGCCGAGATCCAAAAT | 57.193 | 45.000 | 0.00 | 0.00 | 0.00 | 1.82 |
204 | 207 | 6.284891 | TCAAAAATTTGGCCTCTATGAAGG | 57.715 | 37.500 | 3.32 | 0.00 | 38.66 | 3.46 |
238 | 241 | 6.655003 | CACCTCACATCCTTGTTTACTTGTAT | 59.345 | 38.462 | 0.00 | 0.00 | 32.34 | 2.29 |
300 | 303 | 5.365403 | TTGTCTTTTTATACAGGTTGCCG | 57.635 | 39.130 | 0.00 | 0.00 | 0.00 | 5.69 |
304 | 307 | 9.927668 | CCATGAATTTGTCTTTTTATACAGGTT | 57.072 | 29.630 | 0.00 | 0.00 | 0.00 | 3.50 |
472 | 491 | 8.491605 | AACGCAAAATGCAAAATTCATTAAAG | 57.508 | 26.923 | 2.99 | 0.00 | 45.36 | 1.85 |
476 | 495 | 7.859598 | TCTAAACGCAAAATGCAAAATTCATT | 58.140 | 26.923 | 2.99 | 0.00 | 45.36 | 2.57 |
505 | 524 | 0.392998 | GGAGGCCGAGCTTCATGAAA | 60.393 | 55.000 | 9.88 | 0.00 | 36.34 | 2.69 |
507 | 526 | 1.552799 | TTGGAGGCCGAGCTTCATGA | 61.553 | 55.000 | 0.00 | 0.00 | 36.34 | 3.07 |
603 | 622 | 1.070758 | CCCGATCCATCTTGGTACAGG | 59.929 | 57.143 | 0.00 | 0.00 | 42.39 | 4.00 |
605 | 624 | 1.874129 | ACCCGATCCATCTTGGTACA | 58.126 | 50.000 | 0.00 | 0.00 | 39.03 | 2.90 |
606 | 625 | 3.203716 | GAAACCCGATCCATCTTGGTAC | 58.796 | 50.000 | 0.00 | 0.00 | 39.03 | 3.34 |
610 | 629 | 2.991250 | AGTGAAACCCGATCCATCTTG | 58.009 | 47.619 | 0.00 | 0.00 | 37.80 | 3.02 |
648 | 667 | 2.891936 | TGCGCATGCCGTCATCTC | 60.892 | 61.111 | 13.15 | 0.00 | 41.78 | 2.75 |
649 | 668 | 2.296814 | TAGTGCGCATGCCGTCATCT | 62.297 | 55.000 | 15.91 | 4.80 | 41.78 | 2.90 |
650 | 669 | 1.825285 | CTAGTGCGCATGCCGTCATC | 61.825 | 60.000 | 15.91 | 0.00 | 41.78 | 2.92 |
651 | 670 | 1.884464 | CTAGTGCGCATGCCGTCAT | 60.884 | 57.895 | 15.91 | 0.00 | 41.78 | 3.06 |
652 | 671 | 2.509111 | CTAGTGCGCATGCCGTCA | 60.509 | 61.111 | 15.91 | 4.92 | 41.78 | 4.35 |
653 | 672 | 2.509336 | ACTAGTGCGCATGCCGTC | 60.509 | 61.111 | 15.91 | 0.00 | 41.78 | 4.79 |
694 | 714 | 7.333528 | TCAGCACTAGTTTGTGAAAGAAAAT | 57.666 | 32.000 | 0.00 | 0.00 | 40.12 | 1.82 |
699 | 719 | 4.380531 | TCCTCAGCACTAGTTTGTGAAAG | 58.619 | 43.478 | 0.00 | 0.00 | 40.12 | 2.62 |
711 | 731 | 1.261480 | AACACGATCTCCTCAGCACT | 58.739 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
744 | 764 | 3.666797 | CACGTAATTGCGCGTCAGATATA | 59.333 | 43.478 | 16.17 | 0.00 | 39.48 | 0.86 |
753 | 774 | 2.384309 | TGGGACACGTAATTGCGCG | 61.384 | 57.895 | 16.17 | 9.21 | 34.88 | 6.86 |
828 | 850 | 1.134818 | ACTCTGCTCACGTGTGTTCAA | 60.135 | 47.619 | 16.51 | 0.00 | 0.00 | 2.69 |
886 | 908 | 2.500509 | TGGTTGCAAAAAGTTAGCGG | 57.499 | 45.000 | 0.00 | 0.00 | 0.00 | 5.52 |
1016 | 1038 | 2.622064 | AATTGATGGTCCGCTACTCC | 57.378 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1017 | 1039 | 3.798202 | AGAAATTGATGGTCCGCTACTC | 58.202 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
1018 | 1040 | 3.914426 | AGAAATTGATGGTCCGCTACT | 57.086 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
1019 | 1041 | 3.495001 | GCTAGAAATTGATGGTCCGCTAC | 59.505 | 47.826 | 0.00 | 0.00 | 0.00 | 3.58 |
1020 | 1042 | 3.728845 | GCTAGAAATTGATGGTCCGCTA | 58.271 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
1021 | 1043 | 2.565841 | GCTAGAAATTGATGGTCCGCT | 58.434 | 47.619 | 0.00 | 0.00 | 0.00 | 5.52 |
1022 | 1044 | 1.261619 | CGCTAGAAATTGATGGTCCGC | 59.738 | 52.381 | 0.00 | 0.00 | 0.00 | 5.54 |
1023 | 1045 | 1.261619 | GCGCTAGAAATTGATGGTCCG | 59.738 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
1047 | 1073 | 4.635765 | TGTTCGAAGTTTGATGGATGGATC | 59.364 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
1068 | 1094 | 3.937706 | GCTGTCAGATAGAATGCTTGTGT | 59.062 | 43.478 | 3.32 | 0.00 | 0.00 | 3.72 |
1069 | 1095 | 4.190001 | AGCTGTCAGATAGAATGCTTGTG | 58.810 | 43.478 | 3.32 | 0.00 | 34.68 | 3.33 |
1070 | 1096 | 4.161942 | AGAGCTGTCAGATAGAATGCTTGT | 59.838 | 41.667 | 3.32 | 0.00 | 37.25 | 3.16 |
1091 | 1117 | 1.304962 | TGAACCAGCCTCCGCTAGA | 60.305 | 57.895 | 0.00 | 0.00 | 46.25 | 2.43 |
1097 | 1123 | 2.152016 | GTTGTTACTGAACCAGCCTCC | 58.848 | 52.381 | 0.00 | 0.00 | 34.37 | 4.30 |
1111 | 1137 | 1.334239 | GCACGAACGCCATTGTTGTTA | 60.334 | 47.619 | 0.00 | 0.00 | 30.75 | 2.41 |
1468 | 1494 | 3.636282 | ATACTGCGACAACAAAAACCC | 57.364 | 42.857 | 0.00 | 0.00 | 0.00 | 4.11 |
1517 | 1543 | 5.763444 | ACTTCACATCGACGAACAAATAG | 57.237 | 39.130 | 0.00 | 0.00 | 0.00 | 1.73 |
1535 | 1561 | 5.405873 | GTGACCAAAACAGCTACTCTACTTC | 59.594 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1579 | 1605 | 6.531503 | AAAGAGGAGTCAAGTTGATCGATA | 57.468 | 37.500 | 9.18 | 0.00 | 0.00 | 2.92 |
1624 | 1650 | 1.133199 | AGAGAAGATCGGAGGGAGCAT | 60.133 | 52.381 | 0.00 | 0.00 | 32.03 | 3.79 |
1722 | 1759 | 7.372396 | GCGGAGTTTGTAATAAATGATTGTACG | 59.628 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
1734 | 1772 | 3.331150 | CTGTGTGGCGGAGTTTGTAATA | 58.669 | 45.455 | 0.00 | 0.00 | 0.00 | 0.98 |
1748 | 1786 | 2.669569 | CTGTTCCGCCCTGTGTGG | 60.670 | 66.667 | 0.00 | 0.00 | 46.66 | 4.17 |
1752 | 1790 | 0.400213 | TTCATTCTGTTCCGCCCTGT | 59.600 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1755 | 1793 | 2.556622 | TCTTTTTCATTCTGTTCCGCCC | 59.443 | 45.455 | 0.00 | 0.00 | 0.00 | 6.13 |
1757 | 1795 | 6.420604 | TGATTTTCTTTTTCATTCTGTTCCGC | 59.579 | 34.615 | 0.00 | 0.00 | 0.00 | 5.54 |
1809 | 1847 | 0.625849 | AATTTGGTGGCTCCCGAGAT | 59.374 | 50.000 | 2.66 | 0.00 | 34.77 | 2.75 |
1810 | 1848 | 0.404040 | AAATTTGGTGGCTCCCGAGA | 59.596 | 50.000 | 2.66 | 0.00 | 34.77 | 4.04 |
1812 | 1850 | 1.531739 | GCAAATTTGGTGGCTCCCGA | 61.532 | 55.000 | 19.47 | 0.00 | 34.77 | 5.14 |
1813 | 1851 | 1.079888 | GCAAATTTGGTGGCTCCCG | 60.080 | 57.895 | 19.47 | 0.00 | 34.77 | 5.14 |
1814 | 1852 | 1.296392 | GGCAAATTTGGTGGCTCCC | 59.704 | 57.895 | 19.47 | 6.65 | 38.46 | 4.30 |
1815 | 1853 | 1.194121 | AGGGCAAATTTGGTGGCTCC | 61.194 | 55.000 | 19.47 | 10.46 | 41.14 | 4.70 |
1816 | 1854 | 0.037046 | CAGGGCAAATTTGGTGGCTC | 60.037 | 55.000 | 19.47 | 5.18 | 41.14 | 4.70 |
1817 | 1855 | 0.763986 | ACAGGGCAAATTTGGTGGCT | 60.764 | 50.000 | 19.47 | 0.00 | 41.14 | 4.75 |
1821 | 1862 | 3.242011 | AGATCAACAGGGCAAATTTGGT | 58.758 | 40.909 | 19.47 | 6.18 | 0.00 | 3.67 |
1823 | 1864 | 5.299148 | TCAAAGATCAACAGGGCAAATTTG | 58.701 | 37.500 | 14.03 | 14.03 | 0.00 | 2.32 |
1853 | 1897 | 9.582431 | AATATCTCAAAGATGCTGTTGAATTTG | 57.418 | 29.630 | 0.00 | 0.00 | 35.37 | 2.32 |
1861 | 1905 | 8.565896 | TGTTGTAAATATCTCAAAGATGCTGT | 57.434 | 30.769 | 0.00 | 0.00 | 35.37 | 4.40 |
1883 | 1927 | 6.211384 | CCCTTGTTGATTTAAAGGAGGATGTT | 59.789 | 38.462 | 2.25 | 0.00 | 42.65 | 2.71 |
1886 | 1930 | 6.152638 | TCCCTTGTTGATTTAAAGGAGGAT | 57.847 | 37.500 | 2.25 | 0.00 | 42.65 | 3.24 |
1887 | 1931 | 5.592587 | TCCCTTGTTGATTTAAAGGAGGA | 57.407 | 39.130 | 2.25 | 0.00 | 42.65 | 3.71 |
1891 | 1935 | 6.588719 | TGTCATCCCTTGTTGATTTAAAGG | 57.411 | 37.500 | 0.00 | 0.00 | 40.21 | 3.11 |
1910 | 1954 | 7.757941 | TGGAAGAAATTGTATGAACATGTCA | 57.242 | 32.000 | 0.00 | 0.00 | 41.67 | 3.58 |
1914 | 1958 | 7.092716 | GTGCTTGGAAGAAATTGTATGAACAT | 58.907 | 34.615 | 0.00 | 0.00 | 34.97 | 2.71 |
1918 | 1962 | 6.647334 | TTGTGCTTGGAAGAAATTGTATGA | 57.353 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
1927 | 1971 | 1.039856 | GCCCTTTGTGCTTGGAAGAA | 58.960 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1937 | 1981 | 1.654220 | CTCCGTTGTGCCCTTTGTG | 59.346 | 57.895 | 0.00 | 0.00 | 0.00 | 3.33 |
1941 | 1985 | 1.228552 | ATTGCTCCGTTGTGCCCTT | 60.229 | 52.632 | 0.00 | 0.00 | 0.00 | 3.95 |
1945 | 1989 | 2.352503 | AATTGATTGCTCCGTTGTGC | 57.647 | 45.000 | 0.00 | 0.00 | 0.00 | 4.57 |
1946 | 1990 | 6.761731 | TTAAAAATTGATTGCTCCGTTGTG | 57.238 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
1947 | 1991 | 7.778470 | TTTTAAAAATTGATTGCTCCGTTGT | 57.222 | 28.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1951 | 1995 | 9.956797 | CTGTTATTTTAAAAATTGATTGCTCCG | 57.043 | 29.630 | 4.44 | 0.00 | 0.00 | 4.63 |
1968 | 2012 | 9.871238 | AATGACACTAGACGTATCTGTTATTTT | 57.129 | 29.630 | 0.00 | 0.00 | 36.29 | 1.82 |
1969 | 2013 | 9.871238 | AAATGACACTAGACGTATCTGTTATTT | 57.129 | 29.630 | 13.48 | 13.48 | 36.29 | 1.40 |
1970 | 2014 | 9.517609 | GAAATGACACTAGACGTATCTGTTATT | 57.482 | 33.333 | 0.00 | 0.00 | 36.29 | 1.40 |
1971 | 2015 | 8.683615 | TGAAATGACACTAGACGTATCTGTTAT | 58.316 | 33.333 | 0.00 | 0.00 | 36.29 | 1.89 |
1972 | 2016 | 8.047413 | TGAAATGACACTAGACGTATCTGTTA | 57.953 | 34.615 | 0.00 | 0.00 | 36.29 | 2.41 |
1973 | 2017 | 6.920817 | TGAAATGACACTAGACGTATCTGTT | 58.079 | 36.000 | 0.00 | 0.00 | 36.29 | 3.16 |
1974 | 2018 | 6.510879 | TGAAATGACACTAGACGTATCTGT | 57.489 | 37.500 | 0.00 | 0.00 | 36.29 | 3.41 |
1975 | 2019 | 7.993821 | ATTGAAATGACACTAGACGTATCTG | 57.006 | 36.000 | 0.00 | 0.00 | 36.29 | 2.90 |
1979 | 2023 | 9.946165 | CTGTATATTGAAATGACACTAGACGTA | 57.054 | 33.333 | 0.00 | 0.00 | 0.00 | 3.57 |
1980 | 2024 | 7.921214 | CCTGTATATTGAAATGACACTAGACGT | 59.079 | 37.037 | 0.00 | 0.00 | 0.00 | 4.34 |
1981 | 2025 | 7.096023 | GCCTGTATATTGAAATGACACTAGACG | 60.096 | 40.741 | 0.00 | 0.00 | 0.00 | 4.18 |
1982 | 2026 | 7.171678 | GGCCTGTATATTGAAATGACACTAGAC | 59.828 | 40.741 | 0.00 | 0.00 | 0.00 | 2.59 |
1983 | 2027 | 7.217200 | GGCCTGTATATTGAAATGACACTAGA | 58.783 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
1984 | 2028 | 6.428159 | GGGCCTGTATATTGAAATGACACTAG | 59.572 | 42.308 | 0.84 | 0.00 | 0.00 | 2.57 |
1985 | 2029 | 6.296026 | GGGCCTGTATATTGAAATGACACTA | 58.704 | 40.000 | 0.84 | 0.00 | 0.00 | 2.74 |
1986 | 2030 | 5.133221 | GGGCCTGTATATTGAAATGACACT | 58.867 | 41.667 | 0.84 | 0.00 | 0.00 | 3.55 |
1987 | 2031 | 4.024048 | CGGGCCTGTATATTGAAATGACAC | 60.024 | 45.833 | 2.29 | 0.00 | 0.00 | 3.67 |
1988 | 2032 | 4.133820 | CGGGCCTGTATATTGAAATGACA | 58.866 | 43.478 | 2.29 | 0.00 | 0.00 | 3.58 |
1989 | 2033 | 3.502211 | CCGGGCCTGTATATTGAAATGAC | 59.498 | 47.826 | 11.58 | 0.00 | 0.00 | 3.06 |
1990 | 2034 | 3.750371 | CCGGGCCTGTATATTGAAATGA | 58.250 | 45.455 | 11.58 | 0.00 | 0.00 | 2.57 |
1991 | 2035 | 2.228822 | GCCGGGCCTGTATATTGAAATG | 59.771 | 50.000 | 11.58 | 0.00 | 0.00 | 2.32 |
1992 | 2036 | 2.158534 | TGCCGGGCCTGTATATTGAAAT | 60.159 | 45.455 | 17.97 | 0.00 | 0.00 | 2.17 |
1993 | 2037 | 1.213182 | TGCCGGGCCTGTATATTGAAA | 59.787 | 47.619 | 17.97 | 0.00 | 0.00 | 2.69 |
1994 | 2038 | 0.840617 | TGCCGGGCCTGTATATTGAA | 59.159 | 50.000 | 17.97 | 0.00 | 0.00 | 2.69 |
1995 | 2039 | 0.396435 | CTGCCGGGCCTGTATATTGA | 59.604 | 55.000 | 17.97 | 0.00 | 0.00 | 2.57 |
1996 | 2040 | 0.606401 | CCTGCCGGGCCTGTATATTG | 60.606 | 60.000 | 17.97 | 0.00 | 0.00 | 1.90 |
1997 | 2041 | 1.761174 | CCTGCCGGGCCTGTATATT | 59.239 | 57.895 | 17.97 | 0.00 | 0.00 | 1.28 |
1998 | 2042 | 2.224159 | CCCTGCCGGGCCTGTATAT | 61.224 | 63.158 | 17.97 | 0.00 | 45.33 | 0.86 |
1999 | 2043 | 2.847234 | CCCTGCCGGGCCTGTATA | 60.847 | 66.667 | 17.97 | 0.00 | 45.33 | 1.47 |
2008 | 2052 | 3.432051 | CTTAGAGCGTCCCTGCCGG | 62.432 | 68.421 | 0.00 | 0.00 | 34.65 | 6.13 |
2009 | 2053 | 2.105128 | CTTAGAGCGTCCCTGCCG | 59.895 | 66.667 | 0.00 | 0.00 | 34.65 | 5.69 |
2010 | 2054 | 0.036294 | AAACTTAGAGCGTCCCTGCC | 60.036 | 55.000 | 0.00 | 0.00 | 34.65 | 4.85 |
2011 | 2055 | 1.360820 | GAAACTTAGAGCGTCCCTGC | 58.639 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2012 | 2056 | 1.630148 | CGAAACTTAGAGCGTCCCTG | 58.370 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
2013 | 2057 | 0.108756 | GCGAAACTTAGAGCGTCCCT | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2014 | 2058 | 0.108756 | AGCGAAACTTAGAGCGTCCC | 60.109 | 55.000 | 0.00 | 0.00 | 34.34 | 4.46 |
2015 | 2059 | 1.654602 | GAAGCGAAACTTAGAGCGTCC | 59.345 | 52.381 | 0.00 | 0.00 | 39.29 | 4.79 |
2016 | 2060 | 1.654602 | GGAAGCGAAACTTAGAGCGTC | 59.345 | 52.381 | 0.00 | 0.00 | 39.29 | 5.19 |
2017 | 2061 | 1.272769 | AGGAAGCGAAACTTAGAGCGT | 59.727 | 47.619 | 0.00 | 0.00 | 39.29 | 5.07 |
2018 | 2062 | 1.656095 | CAGGAAGCGAAACTTAGAGCG | 59.344 | 52.381 | 0.00 | 0.00 | 39.29 | 5.03 |
2019 | 2063 | 2.668945 | GTCAGGAAGCGAAACTTAGAGC | 59.331 | 50.000 | 0.00 | 0.00 | 39.29 | 4.09 |
2020 | 2064 | 3.675698 | GTGTCAGGAAGCGAAACTTAGAG | 59.324 | 47.826 | 0.00 | 0.00 | 39.29 | 2.43 |
2021 | 2065 | 3.321111 | AGTGTCAGGAAGCGAAACTTAGA | 59.679 | 43.478 | 0.00 | 0.00 | 39.29 | 2.10 |
2022 | 2066 | 3.654414 | AGTGTCAGGAAGCGAAACTTAG | 58.346 | 45.455 | 0.00 | 0.00 | 39.29 | 2.18 |
2023 | 2067 | 3.746045 | AGTGTCAGGAAGCGAAACTTA | 57.254 | 42.857 | 0.00 | 0.00 | 39.29 | 2.24 |
2024 | 2068 | 2.622064 | AGTGTCAGGAAGCGAAACTT | 57.378 | 45.000 | 0.00 | 0.00 | 42.98 | 2.66 |
2025 | 2069 | 3.963428 | ATAGTGTCAGGAAGCGAAACT | 57.037 | 42.857 | 0.00 | 0.00 | 35.15 | 2.66 |
2026 | 2070 | 5.358298 | AAAATAGTGTCAGGAAGCGAAAC | 57.642 | 39.130 | 0.00 | 0.00 | 0.00 | 2.78 |
2027 | 2071 | 7.499321 | TTAAAAATAGTGTCAGGAAGCGAAA | 57.501 | 32.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2028 | 2072 | 7.499321 | TTTAAAAATAGTGTCAGGAAGCGAA | 57.501 | 32.000 | 0.00 | 0.00 | 0.00 | 4.70 |
2029 | 2073 | 7.499321 | TTTTAAAAATAGTGTCAGGAAGCGA | 57.501 | 32.000 | 0.00 | 0.00 | 0.00 | 4.93 |
2030 | 2074 | 8.020819 | TCATTTTAAAAATAGTGTCAGGAAGCG | 58.979 | 33.333 | 4.44 | 0.00 | 0.00 | 4.68 |
2031 | 2075 | 9.129209 | GTCATTTTAAAAATAGTGTCAGGAAGC | 57.871 | 33.333 | 4.44 | 0.00 | 0.00 | 3.86 |
2032 | 2076 | 9.329913 | CGTCATTTTAAAAATAGTGTCAGGAAG | 57.670 | 33.333 | 4.44 | 0.00 | 0.00 | 3.46 |
2033 | 2077 | 9.058174 | TCGTCATTTTAAAAATAGTGTCAGGAA | 57.942 | 29.630 | 4.44 | 0.00 | 0.00 | 3.36 |
2034 | 2078 | 8.610248 | TCGTCATTTTAAAAATAGTGTCAGGA | 57.390 | 30.769 | 4.44 | 0.00 | 0.00 | 3.86 |
2035 | 2079 | 9.840427 | ATTCGTCATTTTAAAAATAGTGTCAGG | 57.160 | 29.630 | 4.44 | 0.00 | 0.00 | 3.86 |
2057 | 2101 | 4.916870 | TGGAATGACACTAGACGTATTCG | 58.083 | 43.478 | 0.00 | 0.00 | 43.34 | 3.34 |
2059 | 2103 | 9.909644 | GTATATTGGAATGACACTAGACGTATT | 57.090 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
2060 | 2104 | 9.074576 | TGTATATTGGAATGACACTAGACGTAT | 57.925 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
2061 | 2105 | 8.454570 | TGTATATTGGAATGACACTAGACGTA | 57.545 | 34.615 | 0.00 | 0.00 | 0.00 | 3.57 |
2063 | 2107 | 6.863645 | CCTGTATATTGGAATGACACTAGACG | 59.136 | 42.308 | 0.00 | 0.00 | 0.00 | 4.18 |
2073 | 2117 | 3.074412 | GTCGGGCCTGTATATTGGAATG | 58.926 | 50.000 | 12.43 | 0.00 | 0.00 | 2.67 |
2074 | 2118 | 2.708861 | TGTCGGGCCTGTATATTGGAAT | 59.291 | 45.455 | 12.43 | 0.00 | 0.00 | 3.01 |
2076 | 2120 | 1.691976 | CTGTCGGGCCTGTATATTGGA | 59.308 | 52.381 | 12.43 | 0.00 | 0.00 | 3.53 |
2078 | 2122 | 3.469008 | TTCTGTCGGGCCTGTATATTG | 57.531 | 47.619 | 12.43 | 0.00 | 0.00 | 1.90 |
2089 | 2133 | 1.067776 | ACTTAGAGCGTTTCTGTCGGG | 60.068 | 52.381 | 2.37 | 0.00 | 36.61 | 5.14 |
2094 | 2138 | 2.731976 | AGCGAAACTTAGAGCGTTTCTG | 59.268 | 45.455 | 12.15 | 7.97 | 44.88 | 3.02 |
2097 | 2141 | 3.808174 | AGAAAGCGAAACTTAGAGCGTTT | 59.192 | 39.130 | 0.00 | 0.00 | 37.75 | 3.60 |
2108 | 2152 | 4.625742 | TGCTATAGTGTCAGAAAGCGAAAC | 59.374 | 41.667 | 0.84 | 0.00 | 32.67 | 2.78 |
2111 | 2155 | 4.174009 | GTTGCTATAGTGTCAGAAAGCGA | 58.826 | 43.478 | 0.84 | 0.00 | 32.67 | 4.93 |
2117 | 2161 | 8.941995 | ATATAAGAGGTTGCTATAGTGTCAGA | 57.058 | 34.615 | 0.84 | 0.00 | 0.00 | 3.27 |
2123 | 2168 | 9.476928 | ACCGATTATATAAGAGGTTGCTATAGT | 57.523 | 33.333 | 15.18 | 0.00 | 0.00 | 2.12 |
2172 | 2738 | 0.396974 | TATTCATTGGCAGCCCCCAC | 60.397 | 55.000 | 9.64 | 0.00 | 33.82 | 4.61 |
2202 | 2845 | 6.863126 | GGAATTTCAGCCGACCATTAATATTG | 59.137 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
2213 | 2856 | 1.087501 | GAGGTGGAATTTCAGCCGAC | 58.912 | 55.000 | 12.38 | 1.45 | 35.93 | 4.79 |
2215 | 2858 | 1.089920 | CAGAGGTGGAATTTCAGCCG | 58.910 | 55.000 | 12.38 | 0.00 | 35.93 | 5.52 |
2216 | 2859 | 0.813821 | GCAGAGGTGGAATTTCAGCC | 59.186 | 55.000 | 12.38 | 4.92 | 35.93 | 4.85 |
2226 | 2869 | 3.618690 | AGTAAAGCTAAGCAGAGGTGG | 57.381 | 47.619 | 0.00 | 0.00 | 0.00 | 4.61 |
2229 | 2872 | 5.735766 | AGGTAAAGTAAAGCTAAGCAGAGG | 58.264 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
2233 | 2876 | 8.241367 | GCAATAAAGGTAAAGTAAAGCTAAGCA | 58.759 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
2234 | 2877 | 8.241367 | TGCAATAAAGGTAAAGTAAAGCTAAGC | 58.759 | 33.333 | 0.00 | 0.00 | 0.00 | 3.09 |
2238 | 2881 | 7.519032 | TGTGCAATAAAGGTAAAGTAAAGCT | 57.481 | 32.000 | 0.00 | 0.00 | 0.00 | 3.74 |
2239 | 2882 | 8.244113 | AGATGTGCAATAAAGGTAAAGTAAAGC | 58.756 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
2242 | 2885 | 9.290988 | TGAAGATGTGCAATAAAGGTAAAGTAA | 57.709 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
2244 | 2887 | 7.230510 | TGTGAAGATGTGCAATAAAGGTAAAGT | 59.769 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
2245 | 2888 | 7.592938 | TGTGAAGATGTGCAATAAAGGTAAAG | 58.407 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
2248 | 2891 | 6.404623 | GCATGTGAAGATGTGCAATAAAGGTA | 60.405 | 38.462 | 0.00 | 0.00 | 37.52 | 3.08 |
2249 | 2892 | 5.622914 | GCATGTGAAGATGTGCAATAAAGGT | 60.623 | 40.000 | 0.00 | 0.00 | 37.52 | 3.50 |
2250 | 2893 | 4.802039 | GCATGTGAAGATGTGCAATAAAGG | 59.198 | 41.667 | 0.00 | 0.00 | 37.52 | 3.11 |
2251 | 2894 | 5.404096 | TGCATGTGAAGATGTGCAATAAAG | 58.596 | 37.500 | 0.00 | 0.00 | 43.83 | 1.85 |
2252 | 2895 | 5.388408 | TGCATGTGAAGATGTGCAATAAA | 57.612 | 34.783 | 0.00 | 0.00 | 43.83 | 1.40 |
2257 | 2900 | 3.945981 | AATTGCATGTGAAGATGTGCA | 57.054 | 38.095 | 0.00 | 0.00 | 44.97 | 4.57 |
2258 | 2901 | 4.266976 | GCTAAATTGCATGTGAAGATGTGC | 59.733 | 41.667 | 0.00 | 0.00 | 38.05 | 4.57 |
2259 | 2902 | 5.404096 | TGCTAAATTGCATGTGAAGATGTG | 58.596 | 37.500 | 0.00 | 0.00 | 38.12 | 3.21 |
2260 | 2903 | 5.648178 | TGCTAAATTGCATGTGAAGATGT | 57.352 | 34.783 | 0.00 | 0.00 | 38.12 | 3.06 |
2286 | 2929 | 8.675504 | ACTTTATTGAGCATCTTTCTCATCTTG | 58.324 | 33.333 | 0.00 | 0.00 | 39.96 | 3.02 |
2310 | 2953 | 9.141400 | CTTAGACTTAATGAGCTTCGTAAAACT | 57.859 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
2311 | 2954 | 9.136952 | TCTTAGACTTAATGAGCTTCGTAAAAC | 57.863 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
2314 | 2957 | 7.921214 | CCATCTTAGACTTAATGAGCTTCGTAA | 59.079 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
2326 | 2969 | 7.046033 | GGAAACGGAATCCATCTTAGACTTAA | 58.954 | 38.462 | 0.00 | 0.00 | 36.92 | 1.85 |
2328 | 2971 | 5.189934 | AGGAAACGGAATCCATCTTAGACTT | 59.810 | 40.000 | 0.00 | 0.00 | 39.55 | 3.01 |
2331 | 2974 | 5.693769 | AAGGAAACGGAATCCATCTTAGA | 57.306 | 39.130 | 0.00 | 0.00 | 39.55 | 2.10 |
2334 | 2977 | 4.018779 | TGGTAAGGAAACGGAATCCATCTT | 60.019 | 41.667 | 0.00 | 0.00 | 39.55 | 2.40 |
2344 | 2987 | 5.458015 | GTTTGATCTTTGGTAAGGAAACGG | 58.542 | 41.667 | 0.00 | 0.00 | 32.02 | 4.44 |
2345 | 2988 | 5.009210 | TGGTTTGATCTTTGGTAAGGAAACG | 59.991 | 40.000 | 0.00 | 0.00 | 32.30 | 3.60 |
2349 | 2992 | 7.010160 | AGAAATGGTTTGATCTTTGGTAAGGA | 58.990 | 34.615 | 0.00 | 0.00 | 32.02 | 3.36 |
2356 | 2999 | 6.530534 | GCATCTGAGAAATGGTTTGATCTTTG | 59.469 | 38.462 | 0.00 | 0.00 | 0.00 | 2.77 |
2367 | 3010 | 6.238049 | CGAAGAGTTTAGCATCTGAGAAATGG | 60.238 | 42.308 | 0.00 | 0.00 | 0.00 | 3.16 |
2375 | 3018 | 4.245660 | TGTTCCGAAGAGTTTAGCATCTG | 58.754 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
2380 | 3023 | 5.607119 | TTTCATGTTCCGAAGAGTTTAGC | 57.393 | 39.130 | 0.00 | 0.00 | 0.00 | 3.09 |
2381 | 3024 | 8.936864 | ACTATTTTCATGTTCCGAAGAGTTTAG | 58.063 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
2382 | 3025 | 8.842358 | ACTATTTTCATGTTCCGAAGAGTTTA | 57.158 | 30.769 | 0.00 | 0.00 | 0.00 | 2.01 |
2390 | 3033 | 5.390461 | CGAGCAAACTATTTTCATGTTCCGA | 60.390 | 40.000 | 0.00 | 0.00 | 0.00 | 4.55 |
2391 | 3034 | 4.788100 | CGAGCAAACTATTTTCATGTTCCG | 59.212 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2392 | 3035 | 5.569059 | CACGAGCAAACTATTTTCATGTTCC | 59.431 | 40.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2413 | 3056 | 8.150279 | ATTGGATCAATTAAATTCGTCTGCACG | 61.150 | 37.037 | 0.00 | 0.00 | 37.86 | 5.34 |
2414 | 3057 | 5.879237 | TGGATCAATTAAATTCGTCTGCAC | 58.121 | 37.500 | 0.00 | 0.00 | 0.00 | 4.57 |
2416 | 3059 | 9.515020 | TTTATTGGATCAATTAAATTCGTCTGC | 57.485 | 29.630 | 0.00 | 0.00 | 35.54 | 4.26 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.