Multiple sequence alignment - TraesCS3B01G261100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G261100 chr3B 100.000 2420 0 0 1 2420 419120694 419118275 0.000000e+00 4470.0
1 TraesCS3B01G261100 chr3B 98.860 351 4 0 1853 2203 642073228 642072878 5.680000e-176 627.0
2 TraesCS3B01G261100 chr3D 93.646 1558 69 8 20 1559 301849557 301851102 0.000000e+00 2302.0
3 TraesCS3B01G261100 chr3D 93.043 230 13 2 1604 1833 301851101 301851327 1.390000e-87 333.0
4 TraesCS3B01G261100 chr3A 95.475 663 24 3 5 661 433409548 433408886 0.000000e+00 1053.0
5 TraesCS3B01G261100 chr3A 88.748 631 37 18 647 1269 433408867 433408263 0.000000e+00 741.0
6 TraesCS3B01G261100 chr3A 98.592 355 4 1 1854 2207 445264929 445265283 5.680000e-176 627.0
7 TraesCS3B01G261100 chr3A 90.398 427 23 8 1433 1853 433405787 433405373 1.640000e-151 545.0
8 TraesCS3B01G261100 chr3A 91.979 187 15 0 2234 2420 433391811 433391625 1.850000e-66 263.0
9 TraesCS3B01G261100 chr3A 91.398 93 8 0 1336 1428 433408264 433408172 7.020000e-26 128.0
10 TraesCS3B01G261100 chr3A 100.000 30 0 0 2390 2419 690441269 690441298 3.360000e-04 56.5
11 TraesCS3B01G261100 chr2B 98.607 359 4 1 1852 2210 410060894 410060537 3.390000e-178 634.0
12 TraesCS3B01G261100 chr7A 97.814 366 8 0 1852 2217 647294713 647294348 1.220000e-177 632.0
13 TraesCS3B01G261100 chr7A 98.857 350 4 0 1854 2203 374573674 374574023 2.040000e-175 625.0
14 TraesCS3B01G261100 chr6B 98.596 356 5 0 1852 2207 646711692 646712047 4.390000e-177 630.0
15 TraesCS3B01G261100 chrUn 98.860 351 4 0 1853 2203 229264660 229265010 5.680000e-176 627.0
16 TraesCS3B01G261100 chr1A 98.857 350 4 0 1854 2203 449928450 449928101 2.040000e-175 625.0
17 TraesCS3B01G261100 chr5B 98.310 355 5 1 1853 2206 536044539 536044185 2.640000e-174 621.0
18 TraesCS3B01G261100 chr1B 100.000 36 0 0 316 351 7406676 7406641 1.550000e-07 67.6
19 TraesCS3B01G261100 chr5D 100.000 30 0 0 2390 2419 253624558 253624529 3.360000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G261100 chr3B 419118275 419120694 2419 True 4470.00 4470 100.00000 1 2420 1 chr3B.!!$R1 2419
1 TraesCS3B01G261100 chr3D 301849557 301851327 1770 False 1317.50 2302 93.34450 20 1833 2 chr3D.!!$F1 1813
2 TraesCS3B01G261100 chr3A 433405373 433409548 4175 True 616.75 1053 91.50475 5 1853 4 chr3A.!!$R2 1848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 555 0.250901 GGAAGGCAAGTGCTTCCTCA 60.251 55.0 19.06 0.0 41.17 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2260 4715 0.031585 GAATTTAAATCGCCCGCCCC 59.968 55.0 0.1 0.0 0.0 5.8 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.586243 GGATTTACAAGCTACTCATTCAGCA 59.414 40.000 0.00 0.00 40.36 4.41
53 54 7.757624 TCAAAACAAAAACACAGGAATCAGTAC 59.242 33.333 0.00 0.00 0.00 2.73
169 170 7.136772 GCTTTTCTGGTTACGAAACTTGTATT 58.863 34.615 0.00 0.00 35.81 1.89
217 218 1.468520 TCAAGCGAGGCATACAAAAGC 59.531 47.619 0.00 0.00 0.00 3.51
257 258 2.567169 ACTGGCTACTGCTAACACATCA 59.433 45.455 0.00 0.00 39.59 3.07
392 393 1.118838 CAGCTAAGCAGAGTAGCCCT 58.881 55.000 0.00 0.00 44.22 5.19
428 429 1.162800 CGGCCATTTCTAGCAGGAGC 61.163 60.000 2.24 0.00 42.56 4.70
513 514 4.492160 CCGAGAAGCTGGCGCGTA 62.492 66.667 8.43 0.00 42.32 4.42
514 515 3.248171 CGAGAAGCTGGCGCGTAC 61.248 66.667 8.43 1.23 42.32 3.67
549 555 0.250901 GGAAGGCAAGTGCTTCCTCA 60.251 55.000 19.06 0.00 41.17 3.86
600 606 0.607489 CTGCCCACTGGAGGACAAAG 60.607 60.000 0.00 0.00 0.00 2.77
650 656 6.071952 CCCTGCATTACACTGTATTTCAAACT 60.072 38.462 0.00 0.00 0.00 2.66
681 719 6.368213 GTGAGGAAAAACCACACGTAAATAG 58.632 40.000 0.00 0.00 46.53 1.73
689 727 4.382291 ACCACACGTAAATAGAAGTGCAA 58.618 39.130 0.00 0.00 38.08 4.08
754 797 4.214327 TCACTCACACCGCGCACA 62.214 61.111 8.75 0.00 0.00 4.57
802 845 1.006832 GCGATGGTCGTGCTACAATT 58.993 50.000 1.11 0.00 42.81 2.32
809 852 2.307049 GTCGTGCTACAATTTGTGTGC 58.693 47.619 12.30 15.13 41.89 4.57
845 888 5.063880 TCAGTTAAGCTTTCAACCTCTTCC 58.936 41.667 3.20 0.00 0.00 3.46
874 927 7.348201 CAATAGACTCCATTTCGAAATACTGC 58.652 38.462 22.33 11.32 0.00 4.40
885 938 5.801350 TCGAAATACTGCTCCTGAATTTG 57.199 39.130 0.00 0.00 0.00 2.32
926 979 0.892755 AAACGGTCCGCTGATCTACA 59.107 50.000 12.28 0.00 0.00 2.74
935 988 2.894126 CCGCTGATCTACAAGACCCTAT 59.106 50.000 0.00 0.00 0.00 2.57
956 1009 9.452517 CCCTATCTCCCATATTAATATCCTTCA 57.547 37.037 4.93 0.00 0.00 3.02
975 1028 1.991339 ATAAACCCACCCCGCCTAGC 61.991 60.000 0.00 0.00 0.00 3.42
978 1031 4.041762 CCCACCCCGCCTAGCAAA 62.042 66.667 0.00 0.00 0.00 3.68
979 1032 2.438434 CCACCCCGCCTAGCAAAG 60.438 66.667 0.00 0.00 0.00 2.77
1184 1240 1.153745 CGACGAGGAAGCTCAAGGG 60.154 63.158 0.00 0.00 0.00 3.95
1191 1247 3.978571 GAAGCTCAAGGGGCCGTCC 62.979 68.421 0.00 0.00 0.00 4.79
1341 1397 3.181494 CCATACACTACGACAACGATGGA 60.181 47.826 0.00 0.00 38.09 3.41
1422 1478 4.202461 GGATACATTGGTAGGGCATGAGAA 60.202 45.833 0.00 0.00 31.88 2.87
1468 3904 0.820871 ACCGAAGATCTGCTCAGGAC 59.179 55.000 0.00 0.00 0.00 3.85
1503 3939 3.633986 AGGGCATGATTCTCCGATTTTTC 59.366 43.478 0.00 0.00 0.00 2.29
1513 3950 6.892658 TTCTCCGATTTTTCAATTTCCTCA 57.107 33.333 0.00 0.00 0.00 3.86
1547 3984 2.826777 ATCGCTGAGGCCCCAGTTTG 62.827 60.000 16.53 6.55 36.57 2.93
1551 3988 0.961753 CTGAGGCCCCAGTTTGTTTC 59.038 55.000 6.01 0.00 0.00 2.78
1599 4039 3.762247 CGCCGTTTCCCGTCCCTA 61.762 66.667 0.00 0.00 33.66 3.53
1746 4189 5.163992 ACTCTTGCGTGTAACATTTGATACG 60.164 40.000 0.00 0.00 35.74 3.06
1785 4228 4.095483 CGATTTGGCAGAAGATAAGCAGTT 59.905 41.667 0.00 0.00 0.00 3.16
1786 4229 5.573337 ATTTGGCAGAAGATAAGCAGTTC 57.427 39.130 0.00 0.00 0.00 3.01
1787 4230 3.701205 TGGCAGAAGATAAGCAGTTCA 57.299 42.857 0.00 0.00 0.00 3.18
1788 4231 4.019792 TGGCAGAAGATAAGCAGTTCAA 57.980 40.909 0.00 0.00 0.00 2.69
1789 4232 4.397420 TGGCAGAAGATAAGCAGTTCAAA 58.603 39.130 0.00 0.00 0.00 2.69
1790 4233 4.216257 TGGCAGAAGATAAGCAGTTCAAAC 59.784 41.667 0.00 0.00 0.00 2.93
1791 4234 4.457257 GGCAGAAGATAAGCAGTTCAAACT 59.543 41.667 0.00 0.00 40.60 2.66
1848 4303 1.909376 CAGTGACGATTCCCAGTACG 58.091 55.000 0.00 0.00 0.00 3.67
1853 4308 0.108329 ACGATTCCCAGTACGCCAAG 60.108 55.000 0.00 0.00 0.00 3.61
1854 4309 0.810031 CGATTCCCAGTACGCCAAGG 60.810 60.000 0.00 0.00 0.00 3.61
1855 4310 0.463833 GATTCCCAGTACGCCAAGGG 60.464 60.000 0.00 0.00 42.86 3.95
1856 4311 2.552231 ATTCCCAGTACGCCAAGGGC 62.552 60.000 0.00 0.00 46.75 5.19
1865 4320 4.519610 GCCAAGGGCTTCTTTGGA 57.480 55.556 10.77 0.00 46.69 3.53
1866 4321 2.982026 GCCAAGGGCTTCTTTGGAT 58.018 52.632 10.77 0.00 46.69 3.41
1867 4322 0.820226 GCCAAGGGCTTCTTTGGATC 59.180 55.000 10.77 0.00 46.69 3.36
1868 4323 1.892329 GCCAAGGGCTTCTTTGGATCA 60.892 52.381 10.77 0.00 46.69 2.92
1869 4324 1.821136 CCAAGGGCTTCTTTGGATCAC 59.179 52.381 1.65 0.00 32.41 3.06
1870 4325 2.517959 CAAGGGCTTCTTTGGATCACA 58.482 47.619 0.00 0.00 32.41 3.58
1871 4326 2.490903 CAAGGGCTTCTTTGGATCACAG 59.509 50.000 0.00 0.00 32.41 3.66
1872 4327 1.005215 AGGGCTTCTTTGGATCACAGG 59.995 52.381 0.00 0.00 0.00 4.00
1873 4328 1.004745 GGGCTTCTTTGGATCACAGGA 59.995 52.381 0.00 0.00 0.00 3.86
1874 4329 2.357569 GGGCTTCTTTGGATCACAGGAT 60.358 50.000 0.00 0.00 36.13 3.24
1875 4330 3.359950 GGCTTCTTTGGATCACAGGATT 58.640 45.455 0.00 0.00 32.67 3.01
1876 4331 4.526970 GGCTTCTTTGGATCACAGGATTA 58.473 43.478 0.00 0.00 32.67 1.75
1877 4332 4.578105 GGCTTCTTTGGATCACAGGATTAG 59.422 45.833 0.00 0.00 32.67 1.73
1878 4333 5.431765 GCTTCTTTGGATCACAGGATTAGA 58.568 41.667 0.00 0.00 32.67 2.10
1879 4334 5.882557 GCTTCTTTGGATCACAGGATTAGAA 59.117 40.000 0.00 0.00 32.67 2.10
1880 4335 6.375455 GCTTCTTTGGATCACAGGATTAGAAA 59.625 38.462 0.00 0.00 32.67 2.52
1881 4336 7.094205 GCTTCTTTGGATCACAGGATTAGAAAA 60.094 37.037 0.00 0.00 32.67 2.29
1882 4337 8.884124 TTCTTTGGATCACAGGATTAGAAAAT 57.116 30.769 0.00 0.00 32.67 1.82
1883 4338 9.973661 TTCTTTGGATCACAGGATTAGAAAATA 57.026 29.630 0.00 0.00 32.67 1.40
1884 4339 9.973661 TCTTTGGATCACAGGATTAGAAAATAA 57.026 29.630 0.00 0.00 32.67 1.40
1887 4342 8.752005 TGGATCACAGGATTAGAAAATAAAGG 57.248 34.615 0.00 0.00 32.67 3.11
1888 4343 8.556589 TGGATCACAGGATTAGAAAATAAAGGA 58.443 33.333 0.00 0.00 32.67 3.36
1889 4344 9.408648 GGATCACAGGATTAGAAAATAAAGGAA 57.591 33.333 0.00 0.00 32.67 3.36
1915 4370 3.726291 AAAACACAGGAATTTGACGGG 57.274 42.857 0.00 0.00 0.00 5.28
1916 4371 2.649531 AACACAGGAATTTGACGGGA 57.350 45.000 0.00 0.00 0.00 5.14
1917 4372 2.879103 ACACAGGAATTTGACGGGAT 57.121 45.000 0.00 0.00 0.00 3.85
1918 4373 3.154827 ACACAGGAATTTGACGGGATT 57.845 42.857 0.00 0.00 0.00 3.01
1919 4374 2.819608 ACACAGGAATTTGACGGGATTG 59.180 45.455 0.00 0.00 0.00 2.67
1920 4375 2.819608 CACAGGAATTTGACGGGATTGT 59.180 45.455 0.00 0.00 0.00 2.71
1921 4376 4.006989 CACAGGAATTTGACGGGATTGTA 58.993 43.478 0.00 0.00 0.00 2.41
1922 4377 4.094887 CACAGGAATTTGACGGGATTGTAG 59.905 45.833 0.00 0.00 0.00 2.74
1923 4378 3.627577 CAGGAATTTGACGGGATTGTAGG 59.372 47.826 0.00 0.00 0.00 3.18
1924 4379 3.265995 AGGAATTTGACGGGATTGTAGGT 59.734 43.478 0.00 0.00 0.00 3.08
1925 4380 3.377172 GGAATTTGACGGGATTGTAGGTG 59.623 47.826 0.00 0.00 0.00 4.00
1926 4381 1.816074 TTTGACGGGATTGTAGGTGC 58.184 50.000 0.00 0.00 0.00 5.01
1927 4382 0.687920 TTGACGGGATTGTAGGTGCA 59.312 50.000 0.00 0.00 0.00 4.57
1928 4383 0.687920 TGACGGGATTGTAGGTGCAA 59.312 50.000 0.00 0.00 0.00 4.08
1929 4384 1.072489 TGACGGGATTGTAGGTGCAAA 59.928 47.619 0.00 0.00 31.63 3.68
1930 4385 2.156098 GACGGGATTGTAGGTGCAAAA 58.844 47.619 0.00 0.00 31.63 2.44
1931 4386 1.883926 ACGGGATTGTAGGTGCAAAAC 59.116 47.619 0.00 0.00 31.63 2.43
1932 4387 1.883275 CGGGATTGTAGGTGCAAAACA 59.117 47.619 0.00 0.00 31.63 2.83
1933 4388 2.095263 CGGGATTGTAGGTGCAAAACAG 60.095 50.000 0.00 0.00 31.63 3.16
1934 4389 3.153919 GGGATTGTAGGTGCAAAACAGA 58.846 45.455 0.00 0.00 31.63 3.41
1935 4390 3.191371 GGGATTGTAGGTGCAAAACAGAG 59.809 47.826 0.00 0.00 31.63 3.35
1936 4391 3.191371 GGATTGTAGGTGCAAAACAGAGG 59.809 47.826 0.00 0.00 31.63 3.69
1937 4392 3.569194 TTGTAGGTGCAAAACAGAGGA 57.431 42.857 0.00 0.00 0.00 3.71
1938 4393 3.788227 TGTAGGTGCAAAACAGAGGAT 57.212 42.857 0.00 0.00 0.00 3.24
1939 4394 4.098914 TGTAGGTGCAAAACAGAGGATT 57.901 40.909 0.00 0.00 0.00 3.01
1940 4395 5.235850 TGTAGGTGCAAAACAGAGGATTA 57.764 39.130 0.00 0.00 0.00 1.75
1941 4396 5.001232 TGTAGGTGCAAAACAGAGGATTAC 58.999 41.667 0.00 0.00 0.00 1.89
1942 4397 4.098914 AGGTGCAAAACAGAGGATTACA 57.901 40.909 0.00 0.00 0.00 2.41
1943 4398 4.469657 AGGTGCAAAACAGAGGATTACAA 58.530 39.130 0.00 0.00 0.00 2.41
1944 4399 4.892934 AGGTGCAAAACAGAGGATTACAAA 59.107 37.500 0.00 0.00 0.00 2.83
1945 4400 5.362430 AGGTGCAAAACAGAGGATTACAAAA 59.638 36.000 0.00 0.00 0.00 2.44
1946 4401 6.041979 AGGTGCAAAACAGAGGATTACAAAAT 59.958 34.615 0.00 0.00 0.00 1.82
1947 4402 7.232534 AGGTGCAAAACAGAGGATTACAAAATA 59.767 33.333 0.00 0.00 0.00 1.40
1948 4403 7.542130 GGTGCAAAACAGAGGATTACAAAATAG 59.458 37.037 0.00 0.00 0.00 1.73
1949 4404 8.296713 GTGCAAAACAGAGGATTACAAAATAGA 58.703 33.333 0.00 0.00 0.00 1.98
1950 4405 8.514594 TGCAAAACAGAGGATTACAAAATAGAG 58.485 33.333 0.00 0.00 0.00 2.43
1951 4406 7.970614 GCAAAACAGAGGATTACAAAATAGAGG 59.029 37.037 0.00 0.00 0.00 3.69
1952 4407 9.231297 CAAAACAGAGGATTACAAAATAGAGGA 57.769 33.333 0.00 0.00 0.00 3.71
1953 4408 9.807921 AAAACAGAGGATTACAAAATAGAGGAA 57.192 29.630 0.00 0.00 0.00 3.36
1954 4409 9.807921 AAACAGAGGATTACAAAATAGAGGAAA 57.192 29.630 0.00 0.00 0.00 3.13
1955 4410 9.807921 AACAGAGGATTACAAAATAGAGGAAAA 57.192 29.630 0.00 0.00 0.00 2.29
1956 4411 9.232473 ACAGAGGATTACAAAATAGAGGAAAAC 57.768 33.333 0.00 0.00 0.00 2.43
1957 4412 9.454859 CAGAGGATTACAAAATAGAGGAAAACT 57.545 33.333 0.00 0.00 0.00 2.66
1973 4428 9.981460 AGAGGAAAACTATAAGAATGGTCATTT 57.019 29.630 0.00 0.00 0.00 2.32
1975 4430 8.971073 AGGAAAACTATAAGAATGGTCATTTGG 58.029 33.333 0.00 0.00 0.00 3.28
1976 4431 8.966868 GGAAAACTATAAGAATGGTCATTTGGA 58.033 33.333 0.00 0.00 0.00 3.53
1979 4434 8.469309 AACTATAAGAATGGTCATTTGGATGG 57.531 34.615 0.00 0.00 33.93 3.51
1980 4435 7.815383 ACTATAAGAATGGTCATTTGGATGGA 58.185 34.615 0.00 0.00 33.93 3.41
1981 4436 8.281531 ACTATAAGAATGGTCATTTGGATGGAA 58.718 33.333 0.00 0.00 33.93 3.53
1982 4437 5.665916 AAGAATGGTCATTTGGATGGAAC 57.334 39.130 0.00 0.00 33.93 3.62
1998 4453 2.757868 TGGAACACAGGAAAAACACAGG 59.242 45.455 0.00 0.00 0.00 4.00
1999 4454 3.020984 GGAACACAGGAAAAACACAGGA 58.979 45.455 0.00 0.00 0.00 3.86
2000 4455 3.445805 GGAACACAGGAAAAACACAGGAA 59.554 43.478 0.00 0.00 0.00 3.36
2001 4456 4.081917 GGAACACAGGAAAAACACAGGAAA 60.082 41.667 0.00 0.00 0.00 3.13
2002 4457 5.474825 GAACACAGGAAAAACACAGGAAAA 58.525 37.500 0.00 0.00 0.00 2.29
2003 4458 5.072040 ACACAGGAAAAACACAGGAAAAG 57.928 39.130 0.00 0.00 0.00 2.27
2004 4459 4.526650 ACACAGGAAAAACACAGGAAAAGT 59.473 37.500 0.00 0.00 0.00 2.66
2005 4460 4.864247 CACAGGAAAAACACAGGAAAAGTG 59.136 41.667 0.00 0.00 42.56 3.16
2006 4461 3.865164 CAGGAAAAACACAGGAAAAGTGC 59.135 43.478 0.00 0.00 40.59 4.40
2007 4462 3.118775 AGGAAAAACACAGGAAAAGTGCC 60.119 43.478 0.00 0.00 40.59 5.01
2008 4463 3.118775 GGAAAAACACAGGAAAAGTGCCT 60.119 43.478 0.00 0.00 40.59 4.75
2009 4464 3.801114 AAAACACAGGAAAAGTGCCTC 57.199 42.857 0.00 0.00 40.59 4.70
2010 4465 1.308998 AACACAGGAAAAGTGCCTCG 58.691 50.000 0.00 0.00 40.59 4.63
2011 4466 0.468226 ACACAGGAAAAGTGCCTCGA 59.532 50.000 0.00 0.00 40.59 4.04
2012 4467 1.072331 ACACAGGAAAAGTGCCTCGAT 59.928 47.619 0.00 0.00 40.59 3.59
2013 4468 2.154462 CACAGGAAAAGTGCCTCGATT 58.846 47.619 0.00 0.00 32.12 3.34
2014 4469 2.160417 CACAGGAAAAGTGCCTCGATTC 59.840 50.000 0.00 0.00 32.12 2.52
2015 4470 2.039084 ACAGGAAAAGTGCCTCGATTCT 59.961 45.455 0.00 0.00 32.12 2.40
2016 4471 3.260884 ACAGGAAAAGTGCCTCGATTCTA 59.739 43.478 0.00 0.00 32.12 2.10
2017 4472 3.619038 CAGGAAAAGTGCCTCGATTCTAC 59.381 47.826 0.00 0.00 32.12 2.59
2018 4473 2.603560 GGAAAAGTGCCTCGATTCTACG 59.396 50.000 0.00 0.00 0.00 3.51
2019 4474 1.641577 AAAGTGCCTCGATTCTACGC 58.358 50.000 0.00 0.00 0.00 4.42
2020 4475 0.525668 AAGTGCCTCGATTCTACGCG 60.526 55.000 3.53 3.53 0.00 6.01
2021 4476 1.063649 GTGCCTCGATTCTACGCGA 59.936 57.895 15.93 0.00 35.01 5.87
2022 4477 0.524816 GTGCCTCGATTCTACGCGAA 60.525 55.000 15.93 0.00 35.95 4.70
2023 4478 0.384309 TGCCTCGATTCTACGCGAAT 59.616 50.000 15.93 0.98 44.87 3.34
2034 4489 6.715344 ATTCTACGCGAATCAGTGTAAAAA 57.285 33.333 15.93 0.00 37.85 1.94
2061 4516 7.881775 AGGTTATAGTGGATGTTGAAATTCC 57.118 36.000 0.00 0.00 0.00 3.01
2062 4517 7.643123 AGGTTATAGTGGATGTTGAAATTCCT 58.357 34.615 0.00 0.00 0.00 3.36
2063 4518 8.778059 AGGTTATAGTGGATGTTGAAATTCCTA 58.222 33.333 0.00 0.00 0.00 2.94
2064 4519 9.574516 GGTTATAGTGGATGTTGAAATTCCTAT 57.425 33.333 0.00 0.00 0.00 2.57
2068 4523 7.451731 AGTGGATGTTGAAATTCCTATAGGA 57.548 36.000 18.00 18.00 43.73 2.94
2069 4524 8.050316 AGTGGATGTTGAAATTCCTATAGGAT 57.950 34.615 22.30 7.73 44.98 3.24
2070 4525 8.506083 AGTGGATGTTGAAATTCCTATAGGATT 58.494 33.333 22.30 15.72 44.98 3.01
2071 4526 8.571336 GTGGATGTTGAAATTCCTATAGGATTG 58.429 37.037 22.30 0.00 44.98 2.67
2072 4527 8.501904 TGGATGTTGAAATTCCTATAGGATTGA 58.498 33.333 22.30 8.22 44.98 2.57
2073 4528 9.007901 GGATGTTGAAATTCCTATAGGATTGAG 57.992 37.037 22.30 0.00 44.98 3.02
2074 4529 8.930846 ATGTTGAAATTCCTATAGGATTGAGG 57.069 34.615 22.30 0.00 44.98 3.86
2075 4530 7.872138 TGTTGAAATTCCTATAGGATTGAGGT 58.128 34.615 22.30 5.13 44.98 3.85
2076 4531 7.775093 TGTTGAAATTCCTATAGGATTGAGGTG 59.225 37.037 22.30 0.00 44.98 4.00
2077 4532 7.451731 TGAAATTCCTATAGGATTGAGGTGT 57.548 36.000 22.30 0.27 44.98 4.16
2078 4533 8.561536 TGAAATTCCTATAGGATTGAGGTGTA 57.438 34.615 22.30 4.41 44.98 2.90
2079 4534 8.651389 TGAAATTCCTATAGGATTGAGGTGTAG 58.349 37.037 22.30 0.00 44.98 2.74
2080 4535 7.560796 AATTCCTATAGGATTGAGGTGTAGG 57.439 40.000 22.30 0.00 44.98 3.18
2081 4536 5.942977 TCCTATAGGATTGAGGTGTAGGA 57.057 43.478 18.00 0.00 39.78 2.94
2082 4537 6.289482 TCCTATAGGATTGAGGTGTAGGAA 57.711 41.667 18.00 0.00 39.78 3.36
2083 4538 6.875469 TCCTATAGGATTGAGGTGTAGGAAT 58.125 40.000 18.00 0.00 39.78 3.01
2084 4539 6.726299 TCCTATAGGATTGAGGTGTAGGAATG 59.274 42.308 18.00 0.00 39.78 2.67
2085 4540 3.567478 AGGATTGAGGTGTAGGAATGC 57.433 47.619 0.00 0.00 0.00 3.56
2086 4541 2.846206 AGGATTGAGGTGTAGGAATGCA 59.154 45.455 0.00 0.00 0.00 3.96
2087 4542 3.461085 AGGATTGAGGTGTAGGAATGCAT 59.539 43.478 0.00 0.00 0.00 3.96
2088 4543 3.817647 GGATTGAGGTGTAGGAATGCATC 59.182 47.826 0.00 0.00 0.00 3.91
2103 4558 6.409524 GAATGCATCCATAGGAATTTTGGA 57.590 37.500 0.00 0.00 43.37 3.53
2104 4559 6.415206 AATGCATCCATAGGAATTTTGGAG 57.585 37.500 0.00 0.00 42.53 3.86
2105 4560 4.217510 TGCATCCATAGGAATTTTGGAGG 58.782 43.478 7.53 7.53 42.53 4.30
2106 4561 4.218312 GCATCCATAGGAATTTTGGAGGT 58.782 43.478 11.41 0.00 42.53 3.85
2107 4562 4.038402 GCATCCATAGGAATTTTGGAGGTG 59.962 45.833 11.41 5.94 42.53 4.00
2108 4563 4.946160 TCCATAGGAATTTTGGAGGTGT 57.054 40.909 0.00 0.00 34.65 4.16
2109 4564 4.599041 TCCATAGGAATTTTGGAGGTGTG 58.401 43.478 0.00 0.00 34.65 3.82
2110 4565 3.701040 CCATAGGAATTTTGGAGGTGTGG 59.299 47.826 0.00 0.00 31.94 4.17
2111 4566 4.344104 CATAGGAATTTTGGAGGTGTGGT 58.656 43.478 0.00 0.00 0.00 4.16
2112 4567 3.328535 AGGAATTTTGGAGGTGTGGTT 57.671 42.857 0.00 0.00 0.00 3.67
2113 4568 3.230976 AGGAATTTTGGAGGTGTGGTTC 58.769 45.455 0.00 0.00 0.00 3.62
2114 4569 2.299013 GGAATTTTGGAGGTGTGGTTCC 59.701 50.000 0.00 0.00 0.00 3.62
2115 4570 3.230976 GAATTTTGGAGGTGTGGTTCCT 58.769 45.455 0.00 0.00 38.09 3.36
2116 4571 2.838637 TTTTGGAGGTGTGGTTCCTT 57.161 45.000 0.00 0.00 35.20 3.36
2117 4572 2.838637 TTTGGAGGTGTGGTTCCTTT 57.161 45.000 0.00 0.00 35.20 3.11
2118 4573 2.065899 TTGGAGGTGTGGTTCCTTTG 57.934 50.000 0.00 0.00 35.20 2.77
2119 4574 1.217916 TGGAGGTGTGGTTCCTTTGA 58.782 50.000 0.00 0.00 35.20 2.69
2120 4575 1.780309 TGGAGGTGTGGTTCCTTTGAT 59.220 47.619 0.00 0.00 35.20 2.57
2121 4576 2.224769 TGGAGGTGTGGTTCCTTTGATC 60.225 50.000 0.00 0.00 35.20 2.92
2122 4577 2.437413 GAGGTGTGGTTCCTTTGATCC 58.563 52.381 0.00 0.00 35.20 3.36
2123 4578 1.780309 AGGTGTGGTTCCTTTGATCCA 59.220 47.619 0.00 0.00 37.90 3.41
2124 4579 2.176798 AGGTGTGGTTCCTTTGATCCAA 59.823 45.455 0.00 0.00 41.03 3.53
2125 4580 2.962421 GGTGTGGTTCCTTTGATCCAAA 59.038 45.455 0.00 0.00 41.03 3.28
2135 4590 4.879197 CTTTGATCCAAAGGGCTTCTTT 57.121 40.909 10.65 0.86 44.75 2.52
2136 4591 5.982890 CTTTGATCCAAAGGGCTTCTTTA 57.017 39.130 10.65 0.00 44.75 1.85
2137 4592 5.958955 CTTTGATCCAAAGGGCTTCTTTAG 58.041 41.667 10.65 0.36 44.75 1.85
2138 4593 3.968265 TGATCCAAAGGGCTTCTTTAGG 58.032 45.455 5.53 8.99 43.32 2.69
2139 4594 3.591527 TGATCCAAAGGGCTTCTTTAGGA 59.408 43.478 17.03 17.03 43.32 2.94
2140 4595 4.044065 TGATCCAAAGGGCTTCTTTAGGAA 59.956 41.667 17.82 8.46 43.32 3.36
2141 4596 4.463050 TCCAAAGGGCTTCTTTAGGAAA 57.537 40.909 14.71 0.00 43.32 3.13
2142 4597 4.810345 TCCAAAGGGCTTCTTTAGGAAAA 58.190 39.130 14.71 0.00 43.32 2.29
2143 4598 5.212745 TCCAAAGGGCTTCTTTAGGAAAAA 58.787 37.500 14.71 0.00 43.32 1.94
2181 4636 8.940397 GGAATCCTCCAATATTCCTATGAAAA 57.060 34.615 6.80 0.00 45.16 2.29
2182 4637 9.539194 GGAATCCTCCAATATTCCTATGAAAAT 57.461 33.333 6.80 0.00 45.16 1.82
2184 4639 9.539194 AATCCTCCAATATTCCTATGAAAATCC 57.461 33.333 0.00 0.00 33.32 3.01
2185 4640 8.293027 TCCTCCAATATTCCTATGAAAATCCT 57.707 34.615 0.00 0.00 33.32 3.24
2186 4641 8.736675 TCCTCCAATATTCCTATGAAAATCCTT 58.263 33.333 0.00 0.00 33.32 3.36
2187 4642 9.018582 CCTCCAATATTCCTATGAAAATCCTTC 57.981 37.037 0.00 0.00 33.32 3.46
2188 4643 9.578576 CTCCAATATTCCTATGAAAATCCTTCA 57.421 33.333 0.00 0.00 33.32 3.02
2189 4644 9.934784 TCCAATATTCCTATGAAAATCCTTCAA 57.065 29.630 0.00 0.00 33.32 2.69
2194 4649 8.843308 ATTCCTATGAAAATCCTTCAATCCAA 57.157 30.769 0.00 0.00 33.32 3.53
2195 4650 8.663209 TTCCTATGAAAATCCTTCAATCCAAA 57.337 30.769 0.00 0.00 31.55 3.28
2196 4651 8.297470 TCCTATGAAAATCCTTCAATCCAAAG 57.703 34.615 0.00 0.00 31.55 2.77
2197 4652 8.115384 TCCTATGAAAATCCTTCAATCCAAAGA 58.885 33.333 0.00 0.00 31.55 2.52
2198 4653 8.411683 CCTATGAAAATCCTTCAATCCAAAGAG 58.588 37.037 0.00 0.00 31.55 2.85
2199 4654 6.594788 TGAAAATCCTTCAATCCAAAGAGG 57.405 37.500 0.00 0.00 39.47 3.69
2200 4655 5.047092 TGAAAATCCTTCAATCCAAAGAGGC 60.047 40.000 0.00 0.00 37.29 4.70
2201 4656 2.514458 TCCTTCAATCCAAAGAGGCC 57.486 50.000 0.00 0.00 37.29 5.19
2202 4657 1.005924 TCCTTCAATCCAAAGAGGCCC 59.994 52.381 0.00 0.00 37.29 5.80
2203 4658 1.478631 CTTCAATCCAAAGAGGCCCC 58.521 55.000 0.00 0.00 37.29 5.80
2204 4659 0.783206 TTCAATCCAAAGAGGCCCCA 59.217 50.000 0.00 0.00 37.29 4.96
2205 4660 0.783206 TCAATCCAAAGAGGCCCCAA 59.217 50.000 0.00 0.00 37.29 4.12
2206 4661 1.148867 TCAATCCAAAGAGGCCCCAAA 59.851 47.619 0.00 0.00 37.29 3.28
2207 4662 1.276138 CAATCCAAAGAGGCCCCAAAC 59.724 52.381 0.00 0.00 37.29 2.93
2208 4663 0.252239 ATCCAAAGAGGCCCCAAACC 60.252 55.000 0.00 0.00 37.29 3.27
2209 4664 1.156095 CCAAAGAGGCCCCAAACCT 59.844 57.895 0.00 0.00 41.41 3.50
2210 4665 1.187567 CCAAAGAGGCCCCAAACCTG 61.188 60.000 0.00 0.00 37.77 4.00
2211 4666 1.156095 AAAGAGGCCCCAAACCTGG 59.844 57.895 0.00 0.00 43.10 4.45
2212 4667 1.368268 AAAGAGGCCCCAAACCTGGA 61.368 55.000 0.00 0.00 46.92 3.86
2213 4668 1.793820 AAGAGGCCCCAAACCTGGAG 61.794 60.000 0.00 0.00 46.92 3.86
2214 4669 3.946126 GAGGCCCCAAACCTGGAGC 62.946 68.421 0.00 0.00 46.92 4.70
2215 4670 3.984732 GGCCCCAAACCTGGAGCT 61.985 66.667 0.00 0.00 45.59 4.09
2216 4671 2.677875 GCCCCAAACCTGGAGCTG 60.678 66.667 0.00 0.00 46.92 4.24
2217 4672 3.170362 CCCCAAACCTGGAGCTGA 58.830 61.111 0.00 0.00 46.92 4.26
2218 4673 1.460255 CCCCAAACCTGGAGCTGAA 59.540 57.895 0.00 0.00 46.92 3.02
2219 4674 0.895559 CCCCAAACCTGGAGCTGAAC 60.896 60.000 0.00 0.00 46.92 3.18
2220 4675 0.111253 CCCAAACCTGGAGCTGAACT 59.889 55.000 0.00 0.00 46.92 3.01
2221 4676 1.242076 CCAAACCTGGAGCTGAACTG 58.758 55.000 0.00 0.00 46.92 3.16
2222 4677 1.202806 CCAAACCTGGAGCTGAACTGA 60.203 52.381 0.00 0.00 46.92 3.41
2223 4678 2.149578 CAAACCTGGAGCTGAACTGAG 58.850 52.381 0.00 0.00 0.00 3.35
2224 4679 0.036022 AACCTGGAGCTGAACTGAGC 59.964 55.000 0.00 0.00 39.46 4.26
2225 4680 1.078567 CCTGGAGCTGAACTGAGCC 60.079 63.158 0.00 0.00 40.08 4.70
2226 4681 1.675801 CTGGAGCTGAACTGAGCCA 59.324 57.895 0.00 0.00 40.08 4.75
2227 4682 0.252479 CTGGAGCTGAACTGAGCCAT 59.748 55.000 0.00 0.00 40.08 4.40
2228 4683 0.251354 TGGAGCTGAACTGAGCCATC 59.749 55.000 0.00 0.00 40.08 3.51
2229 4684 0.540923 GGAGCTGAACTGAGCCATCT 59.459 55.000 0.00 0.00 40.08 2.90
2230 4685 1.759445 GGAGCTGAACTGAGCCATCTA 59.241 52.381 0.00 0.00 40.08 1.98
2231 4686 2.224018 GGAGCTGAACTGAGCCATCTAG 60.224 54.545 0.00 0.00 40.08 2.43
2232 4687 1.138661 AGCTGAACTGAGCCATCTAGC 59.861 52.381 0.00 0.00 40.08 3.42
2234 4689 2.363680 GCTGAACTGAGCCATCTAGCTA 59.636 50.000 0.00 0.00 45.15 3.32
2235 4690 3.181471 GCTGAACTGAGCCATCTAGCTAA 60.181 47.826 0.00 0.00 45.15 3.09
2236 4691 4.367450 CTGAACTGAGCCATCTAGCTAAC 58.633 47.826 0.00 0.00 45.15 2.34
2237 4692 3.181486 TGAACTGAGCCATCTAGCTAACG 60.181 47.826 0.00 0.00 45.15 3.18
2238 4693 1.683917 ACTGAGCCATCTAGCTAACGG 59.316 52.381 0.00 0.00 45.15 4.44
2239 4694 1.683917 CTGAGCCATCTAGCTAACGGT 59.316 52.381 0.00 0.00 45.15 4.83
2240 4695 2.885266 CTGAGCCATCTAGCTAACGGTA 59.115 50.000 0.00 0.00 45.15 4.02
2241 4696 2.621998 TGAGCCATCTAGCTAACGGTAC 59.378 50.000 0.00 0.00 45.15 3.34
2256 4711 1.023502 GGTACGTACTGAGAGAGGGC 58.976 60.000 24.07 0.85 0.00 5.19
2257 4712 0.656785 GTACGTACTGAGAGAGGGCG 59.343 60.000 18.47 0.00 0.00 6.13
2258 4713 0.538584 TACGTACTGAGAGAGGGCGA 59.461 55.000 0.00 0.00 0.00 5.54
2259 4714 1.025647 ACGTACTGAGAGAGGGCGAC 61.026 60.000 0.00 0.00 0.00 5.19
2260 4715 1.722677 GTACTGAGAGAGGGCGACG 59.277 63.158 0.00 0.00 0.00 5.12
2261 4716 1.451567 TACTGAGAGAGGGCGACGG 60.452 63.158 0.00 0.00 0.00 4.79
2262 4717 2.888464 TACTGAGAGAGGGCGACGGG 62.888 65.000 0.00 0.00 0.00 5.28
2274 4729 4.534141 GACGGGGCGGGCGATTTA 62.534 66.667 0.00 0.00 0.00 1.40
2275 4730 4.098722 ACGGGGCGGGCGATTTAA 62.099 61.111 0.00 0.00 0.00 1.52
2276 4731 2.824937 CGGGGCGGGCGATTTAAA 60.825 61.111 0.00 0.00 0.00 1.52
2277 4732 2.190841 CGGGGCGGGCGATTTAAAT 61.191 57.895 0.00 0.00 0.00 1.40
2278 4733 1.730451 CGGGGCGGGCGATTTAAATT 61.730 55.000 1.43 0.00 0.00 1.82
2279 4734 0.031585 GGGGCGGGCGATTTAAATTC 59.968 55.000 1.43 0.00 0.00 2.17
2280 4735 0.317519 GGGCGGGCGATTTAAATTCG 60.318 55.000 1.43 8.56 0.00 3.34
2287 4742 1.786579 GCGATTTAAATTCGCCATGGC 59.213 47.619 27.67 27.67 45.77 4.40
2288 4743 2.543653 GCGATTTAAATTCGCCATGGCT 60.544 45.455 33.07 17.48 45.77 4.75
2289 4744 3.300009 CGATTTAAATTCGCCATGGCTC 58.700 45.455 33.07 19.17 39.32 4.70
2290 4745 3.642705 GATTTAAATTCGCCATGGCTCC 58.357 45.455 33.07 6.46 39.32 4.70
2291 4746 1.021202 TTAAATTCGCCATGGCTCCG 58.979 50.000 33.07 18.78 39.32 4.63
2292 4747 0.817634 TAAATTCGCCATGGCTCCGG 60.818 55.000 33.07 18.40 39.32 5.14
2331 4786 4.742201 CCGCTGTGTCGGTCAGGG 62.742 72.222 10.56 10.56 44.18 4.45
2332 4787 3.991051 CGCTGTGTCGGTCAGGGT 61.991 66.667 9.76 0.00 39.76 4.34
2333 4788 2.357517 GCTGTGTCGGTCAGGGTG 60.358 66.667 0.00 0.00 33.98 4.61
2334 4789 2.343758 CTGTGTCGGTCAGGGTGG 59.656 66.667 0.00 0.00 0.00 4.61
2335 4790 2.123208 TGTGTCGGTCAGGGTGGA 60.123 61.111 0.00 0.00 0.00 4.02
2336 4791 1.754380 CTGTGTCGGTCAGGGTGGAA 61.754 60.000 0.00 0.00 0.00 3.53
2337 4792 1.338890 TGTGTCGGTCAGGGTGGAAA 61.339 55.000 0.00 0.00 0.00 3.13
2338 4793 0.883370 GTGTCGGTCAGGGTGGAAAC 60.883 60.000 0.00 0.00 0.00 2.78
2339 4794 1.666872 GTCGGTCAGGGTGGAAACG 60.667 63.158 0.00 0.00 0.00 3.60
2340 4795 3.047877 CGGTCAGGGTGGAAACGC 61.048 66.667 0.00 0.00 41.20 4.84
2341 4796 3.047877 GGTCAGGGTGGAAACGCG 61.048 66.667 3.53 3.53 43.50 6.01
2342 4797 2.280592 GTCAGGGTGGAAACGCGT 60.281 61.111 5.58 5.58 43.50 6.01
2343 4798 2.280524 TCAGGGTGGAAACGCGTG 60.281 61.111 14.98 0.00 43.50 5.34
2344 4799 3.353836 CAGGGTGGAAACGCGTGG 61.354 66.667 14.98 0.00 43.50 4.94
2345 4800 4.636435 AGGGTGGAAACGCGTGGG 62.636 66.667 14.98 0.00 43.50 4.61
2384 4839 4.760047 CGACCAACCTGGGCCTCG 62.760 72.222 4.53 0.00 44.91 4.63
2396 4851 3.058160 GCCTCGCCAACATGCAGT 61.058 61.111 0.00 0.00 0.00 4.40
2397 4852 2.629656 GCCTCGCCAACATGCAGTT 61.630 57.895 0.00 0.00 42.42 3.16
2406 4861 1.808411 AACATGCAGTTGTAGTCGGG 58.192 50.000 0.00 0.00 39.49 5.14
2407 4862 0.685097 ACATGCAGTTGTAGTCGGGT 59.315 50.000 0.00 0.00 0.00 5.28
2408 4863 1.071699 ACATGCAGTTGTAGTCGGGTT 59.928 47.619 0.00 0.00 0.00 4.11
2409 4864 2.300723 ACATGCAGTTGTAGTCGGGTTA 59.699 45.455 0.00 0.00 0.00 2.85
2410 4865 2.443887 TGCAGTTGTAGTCGGGTTAC 57.556 50.000 0.00 0.00 0.00 2.50
2411 4866 1.687660 TGCAGTTGTAGTCGGGTTACA 59.312 47.619 0.00 0.00 0.00 2.41
2412 4867 2.102757 TGCAGTTGTAGTCGGGTTACAA 59.897 45.455 0.00 4.08 38.36 2.41
2415 4870 1.456923 GTTGTAGTCGGGTTACAACGC 59.543 52.381 16.26 0.00 46.10 4.84
2416 4871 0.961019 TGTAGTCGGGTTACAACGCT 59.039 50.000 7.45 0.00 39.45 5.07
2417 4872 1.340889 TGTAGTCGGGTTACAACGCTT 59.659 47.619 7.45 0.00 39.45 4.68
2418 4873 1.723003 GTAGTCGGGTTACAACGCTTG 59.277 52.381 7.45 0.00 39.45 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.586243 TGCTGAATGAGTAGCTTGTAAATCC 59.414 40.000 0.00 0.00 40.52 3.01
1 2 6.668541 TGCTGAATGAGTAGCTTGTAAATC 57.331 37.500 0.00 0.00 40.52 2.17
3 4 7.174772 TGAAATGCTGAATGAGTAGCTTGTAAA 59.825 33.333 0.00 0.00 40.52 2.01
4 5 6.654582 TGAAATGCTGAATGAGTAGCTTGTAA 59.345 34.615 0.00 0.00 40.52 2.41
5 6 6.172630 TGAAATGCTGAATGAGTAGCTTGTA 58.827 36.000 0.00 0.00 40.52 2.41
6 7 5.005740 TGAAATGCTGAATGAGTAGCTTGT 58.994 37.500 0.00 0.00 40.52 3.16
7 8 5.556355 TGAAATGCTGAATGAGTAGCTTG 57.444 39.130 0.00 0.00 40.52 4.01
8 9 6.579666 TTTGAAATGCTGAATGAGTAGCTT 57.420 33.333 0.00 0.00 40.52 3.74
24 25 8.558973 TGATTCCTGTGTTTTTGTTTTGAAAT 57.441 26.923 0.00 0.00 0.00 2.17
53 54 5.423886 GAGGGAACATCCTAGAAGTTTCTG 58.576 45.833 4.67 0.00 37.25 3.02
101 102 2.833338 AGATCAGGGATATGAGCAGAGC 59.167 50.000 0.00 0.00 38.07 4.09
169 170 5.163794 GCTGCCGCTTACAGTAATTTTAGAA 60.164 40.000 0.00 0.00 37.47 2.10
257 258 2.493278 CGGGGCAAGTTCTGAATGATTT 59.507 45.455 0.00 0.00 0.00 2.17
428 429 0.179089 CTCTCAGATCCACGGCCTTG 60.179 60.000 1.29 1.29 0.00 3.61
513 514 2.741092 CACGGCACTACCACCAGT 59.259 61.111 0.00 0.00 39.03 4.00
514 515 2.047274 CCACGGCACTACCACCAG 60.047 66.667 0.00 0.00 39.03 4.00
549 555 3.389329 TGAGAAGAGTCAAGAAAGCCACT 59.611 43.478 0.00 0.00 0.00 4.00
681 719 1.301716 TGGCCGTCTCTTGCACTTC 60.302 57.895 0.00 0.00 0.00 3.01
787 830 2.289274 CACACAAATTGTAGCACGACCA 59.711 45.455 0.00 0.00 35.67 4.02
809 852 3.267483 CTTAACTGAATACCGTGGTGGG 58.733 50.000 0.72 0.00 44.64 4.61
819 862 7.390718 GGAAGAGGTTGAAAGCTTAACTGAATA 59.609 37.037 11.01 0.00 36.78 1.75
845 888 1.071239 CGAAATGGAGTCTATTGCGCG 60.071 52.381 15.73 0.00 30.61 6.86
885 938 1.482593 ACACCTCGGGATCAGATGAAC 59.517 52.381 0.00 0.00 0.00 3.18
926 979 9.453830 GGATATTAATATGGGAGATAGGGTCTT 57.546 37.037 12.74 0.00 37.29 3.01
956 1009 1.991339 GCTAGGCGGGGTGGGTTTAT 61.991 60.000 0.00 0.00 0.00 1.40
975 1028 3.189080 TGTGATGACGATCCTTTGCTTTG 59.811 43.478 0.00 0.00 0.00 2.77
977 1030 2.744202 GTGTGATGACGATCCTTTGCTT 59.256 45.455 0.00 0.00 0.00 3.91
978 1031 2.350522 GTGTGATGACGATCCTTTGCT 58.649 47.619 0.00 0.00 0.00 3.91
979 1032 1.398390 GGTGTGATGACGATCCTTTGC 59.602 52.381 0.00 0.00 0.00 3.68
1060 1116 1.550976 GGACGTGATCCTCTTGTTCCT 59.449 52.381 0.00 0.00 45.22 3.36
1133 1189 3.553095 AAAGGGCTGAGGGTGTCGC 62.553 63.158 0.00 0.00 0.00 5.19
1134 1190 1.376037 GAAAGGGCTGAGGGTGTCG 60.376 63.158 0.00 0.00 0.00 4.35
1135 1191 1.376037 CGAAAGGGCTGAGGGTGTC 60.376 63.158 0.00 0.00 0.00 3.67
1184 1240 0.171231 GAATCTTTTGCTGGACGGCC 59.829 55.000 0.00 0.00 0.00 6.13
1191 1247 0.522076 GCTCCGCGAATCTTTTGCTG 60.522 55.000 8.23 0.00 37.93 4.41
1392 1448 3.994392 CCCTACCAATGTATCCGAATTCG 59.006 47.826 20.92 20.92 39.44 3.34
1422 1478 2.338381 CTTGAGTTGCTGCAAGGCT 58.662 52.632 16.53 10.34 38.22 4.58
1430 3866 1.940613 GTTGTTCGTCCTTGAGTTGCT 59.059 47.619 0.00 0.00 0.00 3.91
1431 3867 1.002792 GGTTGTTCGTCCTTGAGTTGC 60.003 52.381 0.00 0.00 0.00 4.17
1468 3904 3.667360 TCATGCCCTATCAATGTCGATG 58.333 45.455 0.00 0.00 0.00 3.84
1503 3939 3.878103 CTGAGAGCAGGATGAGGAAATTG 59.122 47.826 0.00 0.00 39.69 2.32
1513 3950 2.492881 CAGCGATATCTGAGAGCAGGAT 59.507 50.000 0.34 0.00 42.53 3.24
1686 4129 6.919662 CGCATTGGAGTAAAATAAATGCTCAT 59.080 34.615 14.55 0.00 46.88 2.90
1696 4139 6.349300 AGAGTACATCGCATTGGAGTAAAAT 58.651 36.000 0.00 0.00 0.00 1.82
1785 4228 3.071892 ACTGGGGACGATAAACAGTTTGA 59.928 43.478 8.93 0.00 39.16 2.69
1786 4229 3.188460 CACTGGGGACGATAAACAGTTTG 59.812 47.826 8.93 0.00 40.14 2.93
1787 4230 3.181448 ACACTGGGGACGATAAACAGTTT 60.181 43.478 3.49 3.49 40.14 2.66
1788 4231 2.370849 ACACTGGGGACGATAAACAGTT 59.629 45.455 0.00 0.00 40.14 3.16
1789 4232 1.975680 ACACTGGGGACGATAAACAGT 59.024 47.619 0.00 0.00 42.62 3.55
1790 4233 2.289444 ACACACTGGGGACGATAAACAG 60.289 50.000 0.00 0.00 35.40 3.16
1791 4234 1.695242 ACACACTGGGGACGATAAACA 59.305 47.619 0.00 0.00 0.00 2.83
1792 4235 2.073816 CACACACTGGGGACGATAAAC 58.926 52.381 0.00 0.00 0.00 2.01
1793 4236 1.695242 ACACACACTGGGGACGATAAA 59.305 47.619 0.00 0.00 0.00 1.40
1794 4237 1.344065 ACACACACTGGGGACGATAA 58.656 50.000 0.00 0.00 0.00 1.75
1795 4238 1.001520 CAACACACACTGGGGACGATA 59.998 52.381 0.00 0.00 0.00 2.92
1796 4239 0.250295 CAACACACACTGGGGACGAT 60.250 55.000 0.00 0.00 0.00 3.73
1853 4308 1.004745 TCCTGTGATCCAAAGAAGCCC 59.995 52.381 0.00 0.00 0.00 5.19
1854 4309 2.496899 TCCTGTGATCCAAAGAAGCC 57.503 50.000 0.00 0.00 0.00 4.35
1855 4310 5.431765 TCTAATCCTGTGATCCAAAGAAGC 58.568 41.667 0.00 0.00 0.00 3.86
1856 4311 7.928307 TTTCTAATCCTGTGATCCAAAGAAG 57.072 36.000 0.00 0.00 0.00 2.85
1857 4312 8.884124 ATTTTCTAATCCTGTGATCCAAAGAA 57.116 30.769 0.00 0.00 0.00 2.52
1858 4313 9.973661 TTATTTTCTAATCCTGTGATCCAAAGA 57.026 29.630 0.00 0.00 0.00 2.52
1861 4316 9.189156 CCTTTATTTTCTAATCCTGTGATCCAA 57.811 33.333 0.00 0.00 0.00 3.53
1862 4317 8.556589 TCCTTTATTTTCTAATCCTGTGATCCA 58.443 33.333 0.00 0.00 0.00 3.41
1863 4318 8.980481 TCCTTTATTTTCTAATCCTGTGATCC 57.020 34.615 0.00 0.00 0.00 3.36
1894 4349 3.702045 TCCCGTCAAATTCCTGTGTTTTT 59.298 39.130 0.00 0.00 0.00 1.94
1895 4350 3.292460 TCCCGTCAAATTCCTGTGTTTT 58.708 40.909 0.00 0.00 0.00 2.43
1896 4351 2.938838 TCCCGTCAAATTCCTGTGTTT 58.061 42.857 0.00 0.00 0.00 2.83
1897 4352 2.649531 TCCCGTCAAATTCCTGTGTT 57.350 45.000 0.00 0.00 0.00 3.32
1898 4353 2.819608 CAATCCCGTCAAATTCCTGTGT 59.180 45.455 0.00 0.00 0.00 3.72
1899 4354 2.819608 ACAATCCCGTCAAATTCCTGTG 59.180 45.455 0.00 0.00 0.00 3.66
1900 4355 3.154827 ACAATCCCGTCAAATTCCTGT 57.845 42.857 0.00 0.00 0.00 4.00
1901 4356 3.627577 CCTACAATCCCGTCAAATTCCTG 59.372 47.826 0.00 0.00 0.00 3.86
1902 4357 3.265995 ACCTACAATCCCGTCAAATTCCT 59.734 43.478 0.00 0.00 0.00 3.36
1903 4358 3.377172 CACCTACAATCCCGTCAAATTCC 59.623 47.826 0.00 0.00 0.00 3.01
1904 4359 3.181500 GCACCTACAATCCCGTCAAATTC 60.181 47.826 0.00 0.00 0.00 2.17
1905 4360 2.752903 GCACCTACAATCCCGTCAAATT 59.247 45.455 0.00 0.00 0.00 1.82
1906 4361 2.290641 TGCACCTACAATCCCGTCAAAT 60.291 45.455 0.00 0.00 0.00 2.32
1907 4362 1.072489 TGCACCTACAATCCCGTCAAA 59.928 47.619 0.00 0.00 0.00 2.69
1908 4363 0.687920 TGCACCTACAATCCCGTCAA 59.312 50.000 0.00 0.00 0.00 3.18
1909 4364 0.687920 TTGCACCTACAATCCCGTCA 59.312 50.000 0.00 0.00 0.00 4.35
1910 4365 1.816074 TTTGCACCTACAATCCCGTC 58.184 50.000 0.00 0.00 0.00 4.79
1911 4366 1.883926 GTTTTGCACCTACAATCCCGT 59.116 47.619 0.00 0.00 0.00 5.28
1912 4367 1.883275 TGTTTTGCACCTACAATCCCG 59.117 47.619 0.00 0.00 0.00 5.14
1913 4368 3.153919 TCTGTTTTGCACCTACAATCCC 58.846 45.455 0.00 0.00 0.00 3.85
1914 4369 3.191371 CCTCTGTTTTGCACCTACAATCC 59.809 47.826 0.00 0.00 0.00 3.01
1915 4370 4.072131 TCCTCTGTTTTGCACCTACAATC 58.928 43.478 0.00 0.00 0.00 2.67
1916 4371 4.098914 TCCTCTGTTTTGCACCTACAAT 57.901 40.909 0.00 0.00 0.00 2.71
1917 4372 3.569194 TCCTCTGTTTTGCACCTACAA 57.431 42.857 0.00 0.00 0.00 2.41
1918 4373 3.788227 ATCCTCTGTTTTGCACCTACA 57.212 42.857 0.00 0.00 0.00 2.74
1919 4374 5.001232 TGTAATCCTCTGTTTTGCACCTAC 58.999 41.667 0.00 0.00 0.00 3.18
1920 4375 5.235850 TGTAATCCTCTGTTTTGCACCTA 57.764 39.130 0.00 0.00 0.00 3.08
1921 4376 4.098914 TGTAATCCTCTGTTTTGCACCT 57.901 40.909 0.00 0.00 0.00 4.00
1922 4377 4.846779 TTGTAATCCTCTGTTTTGCACC 57.153 40.909 0.00 0.00 0.00 5.01
1923 4378 8.296713 TCTATTTTGTAATCCTCTGTTTTGCAC 58.703 33.333 0.00 0.00 0.00 4.57
1924 4379 8.402798 TCTATTTTGTAATCCTCTGTTTTGCA 57.597 30.769 0.00 0.00 0.00 4.08
1925 4380 7.970614 CCTCTATTTTGTAATCCTCTGTTTTGC 59.029 37.037 0.00 0.00 0.00 3.68
1926 4381 9.231297 TCCTCTATTTTGTAATCCTCTGTTTTG 57.769 33.333 0.00 0.00 0.00 2.44
1927 4382 9.807921 TTCCTCTATTTTGTAATCCTCTGTTTT 57.192 29.630 0.00 0.00 0.00 2.43
1928 4383 9.807921 TTTCCTCTATTTTGTAATCCTCTGTTT 57.192 29.630 0.00 0.00 0.00 2.83
1929 4384 9.807921 TTTTCCTCTATTTTGTAATCCTCTGTT 57.192 29.630 0.00 0.00 0.00 3.16
1930 4385 9.232473 GTTTTCCTCTATTTTGTAATCCTCTGT 57.768 33.333 0.00 0.00 0.00 3.41
1931 4386 9.454859 AGTTTTCCTCTATTTTGTAATCCTCTG 57.545 33.333 0.00 0.00 0.00 3.35
1947 4402 9.981460 AAATGACCATTCTTATAGTTTTCCTCT 57.019 29.630 0.00 0.00 0.00 3.69
1949 4404 8.971073 CCAAATGACCATTCTTATAGTTTTCCT 58.029 33.333 0.00 0.00 0.00 3.36
1950 4405 8.966868 TCCAAATGACCATTCTTATAGTTTTCC 58.033 33.333 0.00 0.00 0.00 3.13
1953 4408 8.917088 CCATCCAAATGACCATTCTTATAGTTT 58.083 33.333 0.00 0.00 34.61 2.66
1954 4409 8.281531 TCCATCCAAATGACCATTCTTATAGTT 58.718 33.333 0.00 0.00 34.61 2.24
1955 4410 7.815383 TCCATCCAAATGACCATTCTTATAGT 58.185 34.615 0.00 0.00 34.61 2.12
1956 4411 8.571336 GTTCCATCCAAATGACCATTCTTATAG 58.429 37.037 0.00 0.00 34.61 1.31
1957 4412 8.058235 TGTTCCATCCAAATGACCATTCTTATA 58.942 33.333 0.00 0.00 34.61 0.98
1958 4413 6.896860 TGTTCCATCCAAATGACCATTCTTAT 59.103 34.615 0.00 0.00 34.61 1.73
1959 4414 6.152661 GTGTTCCATCCAAATGACCATTCTTA 59.847 38.462 0.00 0.00 34.61 2.10
1960 4415 5.047092 GTGTTCCATCCAAATGACCATTCTT 60.047 40.000 0.00 0.00 34.61 2.52
1961 4416 4.463891 GTGTTCCATCCAAATGACCATTCT 59.536 41.667 0.00 0.00 34.61 2.40
1962 4417 4.220382 TGTGTTCCATCCAAATGACCATTC 59.780 41.667 0.00 0.00 34.61 2.67
1963 4418 4.158786 TGTGTTCCATCCAAATGACCATT 58.841 39.130 0.00 0.00 34.61 3.16
1964 4419 3.765511 CTGTGTTCCATCCAAATGACCAT 59.234 43.478 0.00 0.00 34.61 3.55
1965 4420 3.156293 CTGTGTTCCATCCAAATGACCA 58.844 45.455 0.00 0.00 34.61 4.02
1966 4421 2.493278 CCTGTGTTCCATCCAAATGACC 59.507 50.000 0.00 0.00 34.61 4.02
1967 4422 3.420893 TCCTGTGTTCCATCCAAATGAC 58.579 45.455 0.00 0.00 34.61 3.06
1968 4423 3.805066 TCCTGTGTTCCATCCAAATGA 57.195 42.857 0.00 0.00 34.61 2.57
1969 4424 4.870123 TTTCCTGTGTTCCATCCAAATG 57.130 40.909 0.00 0.00 0.00 2.32
1970 4425 5.130145 TGTTTTTCCTGTGTTCCATCCAAAT 59.870 36.000 0.00 0.00 0.00 2.32
1971 4426 4.467795 TGTTTTTCCTGTGTTCCATCCAAA 59.532 37.500 0.00 0.00 0.00 3.28
1972 4427 4.026744 TGTTTTTCCTGTGTTCCATCCAA 58.973 39.130 0.00 0.00 0.00 3.53
1973 4428 3.383185 GTGTTTTTCCTGTGTTCCATCCA 59.617 43.478 0.00 0.00 0.00 3.41
1974 4429 3.383185 TGTGTTTTTCCTGTGTTCCATCC 59.617 43.478 0.00 0.00 0.00 3.51
1975 4430 4.499696 CCTGTGTTTTTCCTGTGTTCCATC 60.500 45.833 0.00 0.00 0.00 3.51
1976 4431 3.384467 CCTGTGTTTTTCCTGTGTTCCAT 59.616 43.478 0.00 0.00 0.00 3.41
1977 4432 2.757868 CCTGTGTTTTTCCTGTGTTCCA 59.242 45.455 0.00 0.00 0.00 3.53
1978 4433 3.020984 TCCTGTGTTTTTCCTGTGTTCC 58.979 45.455 0.00 0.00 0.00 3.62
1979 4434 4.712122 TTCCTGTGTTTTTCCTGTGTTC 57.288 40.909 0.00 0.00 0.00 3.18
1980 4435 5.011635 ACTTTTCCTGTGTTTTTCCTGTGTT 59.988 36.000 0.00 0.00 0.00 3.32
1981 4436 4.526650 ACTTTTCCTGTGTTTTTCCTGTGT 59.473 37.500 0.00 0.00 0.00 3.72
1982 4437 4.864247 CACTTTTCCTGTGTTTTTCCTGTG 59.136 41.667 0.00 0.00 0.00 3.66
1983 4438 4.620567 GCACTTTTCCTGTGTTTTTCCTGT 60.621 41.667 0.00 0.00 37.70 4.00
1984 4439 3.865164 GCACTTTTCCTGTGTTTTTCCTG 59.135 43.478 0.00 0.00 37.70 3.86
1985 4440 3.118775 GGCACTTTTCCTGTGTTTTTCCT 60.119 43.478 0.00 0.00 37.70 3.36
1986 4441 3.118775 AGGCACTTTTCCTGTGTTTTTCC 60.119 43.478 0.00 0.00 37.70 3.13
1987 4442 4.112634 GAGGCACTTTTCCTGTGTTTTTC 58.887 43.478 0.00 0.00 41.55 2.29
1988 4443 3.428862 CGAGGCACTTTTCCTGTGTTTTT 60.429 43.478 0.00 0.00 41.55 1.94
1989 4444 2.099098 CGAGGCACTTTTCCTGTGTTTT 59.901 45.455 0.00 0.00 41.55 2.43
1990 4445 1.676006 CGAGGCACTTTTCCTGTGTTT 59.324 47.619 0.00 0.00 41.55 2.83
1991 4446 1.134220 TCGAGGCACTTTTCCTGTGTT 60.134 47.619 0.00 0.00 41.55 3.32
1992 4447 0.468226 TCGAGGCACTTTTCCTGTGT 59.532 50.000 0.00 0.00 41.55 3.72
1993 4448 1.813513 ATCGAGGCACTTTTCCTGTG 58.186 50.000 0.00 0.00 41.55 3.66
1994 4449 2.039084 AGAATCGAGGCACTTTTCCTGT 59.961 45.455 0.00 0.00 41.55 4.00
1995 4450 2.704572 AGAATCGAGGCACTTTTCCTG 58.295 47.619 0.00 0.00 41.55 3.86
1996 4451 3.676324 CGTAGAATCGAGGCACTTTTCCT 60.676 47.826 0.00 0.00 41.55 3.36
1997 4452 2.603560 CGTAGAATCGAGGCACTTTTCC 59.396 50.000 0.00 0.00 41.55 3.13
1998 4453 2.029365 GCGTAGAATCGAGGCACTTTTC 59.971 50.000 3.30 0.00 41.55 2.29
1999 4454 2.000447 GCGTAGAATCGAGGCACTTTT 59.000 47.619 3.30 0.00 41.55 2.27
2000 4455 1.641577 GCGTAGAATCGAGGCACTTT 58.358 50.000 3.30 0.00 41.55 2.66
2001 4456 0.525668 CGCGTAGAATCGAGGCACTT 60.526 55.000 8.58 0.00 41.55 3.16
2002 4457 2.879163 TTCGCGTAGAATCGAGGCACT 61.879 52.381 5.77 0.00 35.65 4.40
2003 4458 0.524816 TTCGCGTAGAATCGAGGCAC 60.525 55.000 5.77 0.00 36.02 5.01
2004 4459 0.384309 ATTCGCGTAGAATCGAGGCA 59.616 50.000 5.77 0.00 45.95 4.75
2005 4460 3.180984 ATTCGCGTAGAATCGAGGC 57.819 52.632 5.77 0.00 45.95 4.70
2035 4490 8.749354 GGAATTTCAACATCCACTATAACCTTT 58.251 33.333 0.00 0.00 33.30 3.11
2036 4491 8.116026 AGGAATTTCAACATCCACTATAACCTT 58.884 33.333 0.00 0.00 35.62 3.50
2037 4492 7.643123 AGGAATTTCAACATCCACTATAACCT 58.357 34.615 0.00 0.00 35.62 3.50
2038 4493 7.881775 AGGAATTTCAACATCCACTATAACC 57.118 36.000 0.00 0.00 35.62 2.85
2042 4497 9.170890 TCCTATAGGAATTTCAACATCCACTAT 57.829 33.333 19.59 0.00 42.18 2.12
2043 4498 8.561536 TCCTATAGGAATTTCAACATCCACTA 57.438 34.615 19.59 0.00 42.18 2.74
2044 4499 7.451731 TCCTATAGGAATTTCAACATCCACT 57.548 36.000 19.59 0.00 42.18 4.00
2060 4515 6.575254 GCATTCCTACACCTCAATCCTATAGG 60.575 46.154 13.07 13.07 36.42 2.57
2061 4516 6.014242 TGCATTCCTACACCTCAATCCTATAG 60.014 42.308 0.00 0.00 0.00 1.31
2062 4517 5.843969 TGCATTCCTACACCTCAATCCTATA 59.156 40.000 0.00 0.00 0.00 1.31
2063 4518 4.660303 TGCATTCCTACACCTCAATCCTAT 59.340 41.667 0.00 0.00 0.00 2.57
2064 4519 4.037222 TGCATTCCTACACCTCAATCCTA 58.963 43.478 0.00 0.00 0.00 2.94
2065 4520 2.846206 TGCATTCCTACACCTCAATCCT 59.154 45.455 0.00 0.00 0.00 3.24
2066 4521 3.281727 TGCATTCCTACACCTCAATCC 57.718 47.619 0.00 0.00 0.00 3.01
2067 4522 3.817647 GGATGCATTCCTACACCTCAATC 59.182 47.826 0.00 0.00 41.78 2.67
2068 4523 3.202818 TGGATGCATTCCTACACCTCAAT 59.797 43.478 1.51 0.00 45.68 2.57
2069 4524 2.575735 TGGATGCATTCCTACACCTCAA 59.424 45.455 1.51 0.00 45.68 3.02
2070 4525 2.195727 TGGATGCATTCCTACACCTCA 58.804 47.619 1.51 0.00 45.68 3.86
2071 4526 3.498774 ATGGATGCATTCCTACACCTC 57.501 47.619 1.51 0.00 45.68 3.85
2072 4527 3.328931 CCTATGGATGCATTCCTACACCT 59.671 47.826 4.56 0.00 45.68 4.00
2073 4528 3.327757 TCCTATGGATGCATTCCTACACC 59.672 47.826 4.56 0.00 45.68 4.16
2074 4529 4.623932 TCCTATGGATGCATTCCTACAC 57.376 45.455 4.56 0.00 45.68 2.90
2075 4530 5.848286 ATTCCTATGGATGCATTCCTACA 57.152 39.130 4.56 0.00 45.68 2.74
2076 4531 7.373493 CAAAATTCCTATGGATGCATTCCTAC 58.627 38.462 4.56 0.00 45.68 3.18
2077 4532 6.494491 CCAAAATTCCTATGGATGCATTCCTA 59.506 38.462 4.56 0.00 45.68 2.94
2078 4533 5.306160 CCAAAATTCCTATGGATGCATTCCT 59.694 40.000 4.56 0.00 45.68 3.36
2079 4534 5.305128 TCCAAAATTCCTATGGATGCATTCC 59.695 40.000 4.56 5.41 45.69 3.01
2080 4535 6.409524 TCCAAAATTCCTATGGATGCATTC 57.590 37.500 4.56 0.00 38.30 2.67
2081 4536 5.306160 CCTCCAAAATTCCTATGGATGCATT 59.694 40.000 4.56 0.00 42.12 3.56
2082 4537 4.836736 CCTCCAAAATTCCTATGGATGCAT 59.163 41.667 4.68 4.68 42.12 3.96
2083 4538 4.217510 CCTCCAAAATTCCTATGGATGCA 58.782 43.478 0.00 0.00 42.12 3.96
2084 4539 4.038402 CACCTCCAAAATTCCTATGGATGC 59.962 45.833 0.00 0.00 42.12 3.91
2085 4540 5.068198 CACACCTCCAAAATTCCTATGGATG 59.932 44.000 0.00 0.00 42.12 3.51
2086 4541 5.203528 CACACCTCCAAAATTCCTATGGAT 58.796 41.667 0.00 0.00 42.12 3.41
2087 4542 4.569653 CCACACCTCCAAAATTCCTATGGA 60.570 45.833 0.00 0.00 40.84 3.41
2088 4543 3.701040 CCACACCTCCAAAATTCCTATGG 59.299 47.826 0.00 0.00 35.49 2.74
2089 4544 4.344104 ACCACACCTCCAAAATTCCTATG 58.656 43.478 0.00 0.00 0.00 2.23
2090 4545 4.675063 ACCACACCTCCAAAATTCCTAT 57.325 40.909 0.00 0.00 0.00 2.57
2091 4546 4.403734 GAACCACACCTCCAAAATTCCTA 58.596 43.478 0.00 0.00 0.00 2.94
2092 4547 3.230976 GAACCACACCTCCAAAATTCCT 58.769 45.455 0.00 0.00 0.00 3.36
2093 4548 2.299013 GGAACCACACCTCCAAAATTCC 59.701 50.000 0.00 0.00 0.00 3.01
2094 4549 3.230976 AGGAACCACACCTCCAAAATTC 58.769 45.455 0.00 0.00 33.83 2.17
2095 4550 3.328535 AGGAACCACACCTCCAAAATT 57.671 42.857 0.00 0.00 33.83 1.82
2096 4551 3.328535 AAGGAACCACACCTCCAAAAT 57.671 42.857 0.00 0.00 36.67 1.82
2097 4552 2.763448 CAAAGGAACCACACCTCCAAAA 59.237 45.455 0.00 0.00 36.67 2.44
2098 4553 2.024846 TCAAAGGAACCACACCTCCAAA 60.025 45.455 0.00 0.00 36.67 3.28
2099 4554 1.566703 TCAAAGGAACCACACCTCCAA 59.433 47.619 0.00 0.00 36.67 3.53
2100 4555 1.217916 TCAAAGGAACCACACCTCCA 58.782 50.000 0.00 0.00 36.67 3.86
2101 4556 2.437413 GATCAAAGGAACCACACCTCC 58.563 52.381 0.00 0.00 36.67 4.30
2102 4557 2.224769 TGGATCAAAGGAACCACACCTC 60.225 50.000 0.00 0.00 40.67 3.85
2103 4558 1.780309 TGGATCAAAGGAACCACACCT 59.220 47.619 0.00 0.00 40.67 4.00
2104 4559 2.286365 TGGATCAAAGGAACCACACC 57.714 50.000 0.00 0.00 40.67 4.16
2105 4560 4.243007 CTTTGGATCAAAGGAACCACAC 57.757 45.455 11.36 0.00 44.68 3.82
2115 4570 4.772100 CCTAAAGAAGCCCTTTGGATCAAA 59.228 41.667 12.17 0.00 43.52 2.69
2116 4571 4.044065 TCCTAAAGAAGCCCTTTGGATCAA 59.956 41.667 12.17 0.00 43.52 2.57
2117 4572 3.591527 TCCTAAAGAAGCCCTTTGGATCA 59.408 43.478 12.17 0.00 43.52 2.92
2118 4573 4.236527 TCCTAAAGAAGCCCTTTGGATC 57.763 45.455 12.17 0.00 43.52 3.36
2119 4574 4.675063 TTCCTAAAGAAGCCCTTTGGAT 57.325 40.909 12.17 0.00 43.52 3.41
2120 4575 4.463050 TTTCCTAAAGAAGCCCTTTGGA 57.537 40.909 12.17 12.16 43.52 3.53
2121 4576 5.545063 TTTTTCCTAAAGAAGCCCTTTGG 57.455 39.130 10.83 8.28 44.34 3.28
2158 4613 9.539194 GGATTTTCATAGGAATATTGGAGGATT 57.461 33.333 0.00 0.00 31.93 3.01
2159 4614 8.909141 AGGATTTTCATAGGAATATTGGAGGAT 58.091 33.333 0.00 0.00 31.93 3.24
2160 4615 8.293027 AGGATTTTCATAGGAATATTGGAGGA 57.707 34.615 0.00 0.00 31.93 3.71
2161 4616 8.946797 AAGGATTTTCATAGGAATATTGGAGG 57.053 34.615 0.00 0.00 31.93 4.30
2162 4617 9.578576 TGAAGGATTTTCATAGGAATATTGGAG 57.421 33.333 0.00 0.00 31.93 3.86
2163 4618 9.934784 TTGAAGGATTTTCATAGGAATATTGGA 57.065 29.630 0.00 0.00 31.93 3.53
2168 4623 9.934784 TTGGATTGAAGGATTTTCATAGGAATA 57.065 29.630 0.00 0.00 31.93 1.75
2169 4624 8.843308 TTGGATTGAAGGATTTTCATAGGAAT 57.157 30.769 0.00 0.00 31.93 3.01
2170 4625 8.663209 TTTGGATTGAAGGATTTTCATAGGAA 57.337 30.769 0.00 0.00 0.00 3.36
2171 4626 8.115384 TCTTTGGATTGAAGGATTTTCATAGGA 58.885 33.333 0.00 0.00 0.00 2.94
2172 4627 8.297470 TCTTTGGATTGAAGGATTTTCATAGG 57.703 34.615 0.00 0.00 0.00 2.57
2173 4628 8.411683 CCTCTTTGGATTGAAGGATTTTCATAG 58.588 37.037 0.00 0.00 38.35 2.23
2174 4629 7.147846 GCCTCTTTGGATTGAAGGATTTTCATA 60.148 37.037 0.00 0.00 38.35 2.15
2175 4630 6.351626 GCCTCTTTGGATTGAAGGATTTTCAT 60.352 38.462 0.00 0.00 38.35 2.57
2176 4631 5.047092 GCCTCTTTGGATTGAAGGATTTTCA 60.047 40.000 0.00 0.00 38.35 2.69
2177 4632 5.414360 GCCTCTTTGGATTGAAGGATTTTC 58.586 41.667 0.00 0.00 38.35 2.29
2178 4633 4.223700 GGCCTCTTTGGATTGAAGGATTTT 59.776 41.667 0.00 0.00 38.35 1.82
2179 4634 3.771479 GGCCTCTTTGGATTGAAGGATTT 59.229 43.478 0.00 0.00 38.35 2.17
2180 4635 3.369175 GGCCTCTTTGGATTGAAGGATT 58.631 45.455 0.00 0.00 38.35 3.01
2181 4636 2.358615 GGGCCTCTTTGGATTGAAGGAT 60.359 50.000 0.84 0.00 38.35 3.24
2182 4637 1.005924 GGGCCTCTTTGGATTGAAGGA 59.994 52.381 0.84 0.00 38.35 3.36
2183 4638 1.478631 GGGCCTCTTTGGATTGAAGG 58.521 55.000 0.84 0.00 38.35 3.46
2184 4639 1.272648 TGGGGCCTCTTTGGATTGAAG 60.273 52.381 3.07 0.00 38.35 3.02
2185 4640 0.783206 TGGGGCCTCTTTGGATTGAA 59.217 50.000 3.07 0.00 38.35 2.69
2186 4641 0.783206 TTGGGGCCTCTTTGGATTGA 59.217 50.000 3.07 0.00 38.35 2.57
2187 4642 1.276138 GTTTGGGGCCTCTTTGGATTG 59.724 52.381 3.07 0.00 38.35 2.67
2188 4643 1.644509 GTTTGGGGCCTCTTTGGATT 58.355 50.000 3.07 0.00 38.35 3.01
2189 4644 0.252239 GGTTTGGGGCCTCTTTGGAT 60.252 55.000 3.07 0.00 38.35 3.41
2190 4645 1.155155 GGTTTGGGGCCTCTTTGGA 59.845 57.895 3.07 0.00 38.35 3.53
2191 4646 1.156095 AGGTTTGGGGCCTCTTTGG 59.844 57.895 3.07 0.00 39.35 3.28
2192 4647 1.187567 CCAGGTTTGGGGCCTCTTTG 61.188 60.000 3.07 0.00 41.05 2.77
2193 4648 1.156095 CCAGGTTTGGGGCCTCTTT 59.844 57.895 3.07 0.00 41.05 2.52
2194 4649 1.778383 TCCAGGTTTGGGGCCTCTT 60.778 57.895 3.07 0.00 45.10 2.85
2195 4650 2.121506 TCCAGGTTTGGGGCCTCT 60.122 61.111 3.07 0.00 45.10 3.69
2196 4651 2.356667 CTCCAGGTTTGGGGCCTC 59.643 66.667 0.84 0.00 45.10 4.70
2201 4656 0.111253 AGTTCAGCTCCAGGTTTGGG 59.889 55.000 0.00 0.00 45.10 4.12
2202 4657 1.202806 TCAGTTCAGCTCCAGGTTTGG 60.203 52.381 0.00 0.00 46.49 3.28
2203 4658 2.149578 CTCAGTTCAGCTCCAGGTTTG 58.850 52.381 0.00 0.00 0.00 2.93
2204 4659 1.544314 GCTCAGTTCAGCTCCAGGTTT 60.544 52.381 0.00 0.00 36.38 3.27
2205 4660 0.036022 GCTCAGTTCAGCTCCAGGTT 59.964 55.000 0.00 0.00 36.38 3.50
2206 4661 1.676384 GCTCAGTTCAGCTCCAGGT 59.324 57.895 0.00 0.00 36.38 4.00
2207 4662 1.078567 GGCTCAGTTCAGCTCCAGG 60.079 63.158 0.00 0.00 39.58 4.45
2208 4663 0.252479 ATGGCTCAGTTCAGCTCCAG 59.748 55.000 0.00 0.00 39.58 3.86
2209 4664 0.251354 GATGGCTCAGTTCAGCTCCA 59.749 55.000 0.00 0.00 39.58 3.86
2210 4665 0.540923 AGATGGCTCAGTTCAGCTCC 59.459 55.000 0.00 0.00 39.58 4.70
2211 4666 2.802774 GCTAGATGGCTCAGTTCAGCTC 60.803 54.545 0.00 0.00 39.58 4.09
2212 4667 1.138661 GCTAGATGGCTCAGTTCAGCT 59.861 52.381 0.00 0.00 39.58 4.24
2213 4668 1.138661 AGCTAGATGGCTCAGTTCAGC 59.861 52.381 0.00 0.00 38.24 4.26
2214 4669 4.367450 GTTAGCTAGATGGCTCAGTTCAG 58.633 47.826 0.00 0.00 42.97 3.02
2215 4670 3.181486 CGTTAGCTAGATGGCTCAGTTCA 60.181 47.826 0.00 0.00 42.97 3.18
2216 4671 3.376540 CGTTAGCTAGATGGCTCAGTTC 58.623 50.000 0.00 0.00 42.97 3.01
2217 4672 2.101582 CCGTTAGCTAGATGGCTCAGTT 59.898 50.000 0.00 0.00 42.97 3.16
2218 4673 1.683917 CCGTTAGCTAGATGGCTCAGT 59.316 52.381 0.00 0.00 42.97 3.41
2219 4674 1.683917 ACCGTTAGCTAGATGGCTCAG 59.316 52.381 11.76 0.00 42.97 3.35
2220 4675 1.776662 ACCGTTAGCTAGATGGCTCA 58.223 50.000 11.76 0.00 42.97 4.26
2221 4676 2.350580 CGTACCGTTAGCTAGATGGCTC 60.351 54.545 11.76 6.61 42.97 4.70
2222 4677 1.607628 CGTACCGTTAGCTAGATGGCT 59.392 52.381 11.76 0.00 45.29 4.75
2223 4678 1.336125 ACGTACCGTTAGCTAGATGGC 59.664 52.381 11.76 0.00 36.35 4.40
2224 4679 3.812053 AGTACGTACCGTTAGCTAGATGG 59.188 47.826 21.80 10.76 41.54 3.51
2225 4680 4.509230 TCAGTACGTACCGTTAGCTAGATG 59.491 45.833 21.80 9.15 41.54 2.90
2226 4681 4.697514 TCAGTACGTACCGTTAGCTAGAT 58.302 43.478 21.80 0.00 41.54 1.98
2227 4682 4.115516 CTCAGTACGTACCGTTAGCTAGA 58.884 47.826 21.80 5.86 41.54 2.43
2228 4683 4.115516 TCTCAGTACGTACCGTTAGCTAG 58.884 47.826 21.80 4.61 41.54 3.42
2229 4684 4.115516 CTCTCAGTACGTACCGTTAGCTA 58.884 47.826 21.80 0.00 41.54 3.32
2230 4685 2.935201 CTCTCAGTACGTACCGTTAGCT 59.065 50.000 21.80 0.00 41.54 3.32
2231 4686 2.932614 TCTCTCAGTACGTACCGTTAGC 59.067 50.000 21.80 0.00 41.54 3.09
2232 4687 3.555139 CCTCTCTCAGTACGTACCGTTAG 59.445 52.174 21.80 14.20 41.54 2.34
2233 4688 3.525537 CCTCTCTCAGTACGTACCGTTA 58.474 50.000 21.80 5.30 41.54 3.18
2234 4689 2.354259 CCTCTCTCAGTACGTACCGTT 58.646 52.381 21.80 0.72 41.54 4.44
2235 4690 1.406614 CCCTCTCTCAGTACGTACCGT 60.407 57.143 21.80 1.52 44.35 4.83
2236 4691 1.297664 CCCTCTCTCAGTACGTACCG 58.702 60.000 21.80 12.46 0.00 4.02
2237 4692 1.023502 GCCCTCTCTCAGTACGTACC 58.976 60.000 21.80 4.66 0.00 3.34
2238 4693 0.656785 CGCCCTCTCTCAGTACGTAC 59.343 60.000 18.10 18.10 0.00 3.67
2239 4694 0.538584 TCGCCCTCTCTCAGTACGTA 59.461 55.000 0.00 0.00 0.00 3.57
2240 4695 1.025647 GTCGCCCTCTCTCAGTACGT 61.026 60.000 0.00 0.00 0.00 3.57
2241 4696 1.722677 GTCGCCCTCTCTCAGTACG 59.277 63.158 0.00 0.00 0.00 3.67
2242 4697 1.716826 CCGTCGCCCTCTCTCAGTAC 61.717 65.000 0.00 0.00 0.00 2.73
2243 4698 1.451567 CCGTCGCCCTCTCTCAGTA 60.452 63.158 0.00 0.00 0.00 2.74
2244 4699 2.752238 CCGTCGCCCTCTCTCAGT 60.752 66.667 0.00 0.00 0.00 3.41
2245 4700 3.522731 CCCGTCGCCCTCTCTCAG 61.523 72.222 0.00 0.00 0.00 3.35
2257 4712 4.534141 TAAATCGCCCGCCCCGTC 62.534 66.667 0.00 0.00 0.00 4.79
2258 4713 2.897172 ATTTAAATCGCCCGCCCCGT 62.897 55.000 0.00 0.00 0.00 5.28
2259 4714 1.730451 AATTTAAATCGCCCGCCCCG 61.730 55.000 0.10 0.00 0.00 5.73
2260 4715 0.031585 GAATTTAAATCGCCCGCCCC 59.968 55.000 0.10 0.00 0.00 5.80
2261 4716 0.317519 CGAATTTAAATCGCCCGCCC 60.318 55.000 0.10 0.00 33.07 6.13
2262 4717 3.157922 CGAATTTAAATCGCCCGCC 57.842 52.632 0.10 0.00 33.07 6.13
2315 4770 3.991051 ACCCTGACCGACACAGCG 61.991 66.667 0.00 0.00 34.47 5.18
2316 4771 2.357517 CACCCTGACCGACACAGC 60.358 66.667 0.00 0.00 34.47 4.40
2317 4772 1.754380 TTCCACCCTGACCGACACAG 61.754 60.000 0.00 0.00 35.43 3.66
2318 4773 1.338890 TTTCCACCCTGACCGACACA 61.339 55.000 0.00 0.00 0.00 3.72
2319 4774 0.883370 GTTTCCACCCTGACCGACAC 60.883 60.000 0.00 0.00 0.00 3.67
2320 4775 1.448497 GTTTCCACCCTGACCGACA 59.552 57.895 0.00 0.00 0.00 4.35
2321 4776 1.666872 CGTTTCCACCCTGACCGAC 60.667 63.158 0.00 0.00 0.00 4.79
2322 4777 2.738480 CGTTTCCACCCTGACCGA 59.262 61.111 0.00 0.00 0.00 4.69
2323 4778 3.047877 GCGTTTCCACCCTGACCG 61.048 66.667 0.00 0.00 0.00 4.79
2324 4779 3.047877 CGCGTTTCCACCCTGACC 61.048 66.667 0.00 0.00 0.00 4.02
2325 4780 2.280592 ACGCGTTTCCACCCTGAC 60.281 61.111 5.58 0.00 0.00 3.51
2326 4781 2.280524 CACGCGTTTCCACCCTGA 60.281 61.111 10.22 0.00 0.00 3.86
2327 4782 3.353836 CCACGCGTTTCCACCCTG 61.354 66.667 10.22 0.00 0.00 4.45
2328 4783 4.636435 CCCACGCGTTTCCACCCT 62.636 66.667 10.22 0.00 0.00 4.34
2367 4822 4.760047 CGAGGCCCAGGTTGGTCG 62.760 72.222 0.00 0.00 35.17 4.79
2379 4834 2.629656 AACTGCATGTTGGCGAGGC 61.630 57.895 0.00 0.00 37.52 4.70
2380 4835 3.672293 AACTGCATGTTGGCGAGG 58.328 55.556 0.00 0.00 37.52 4.63
2387 4842 1.071699 ACCCGACTACAACTGCATGTT 59.928 47.619 0.00 0.00 39.92 2.71
2388 4843 0.685097 ACCCGACTACAACTGCATGT 59.315 50.000 0.00 0.00 37.32 3.21
2389 4844 1.808411 AACCCGACTACAACTGCATG 58.192 50.000 0.00 0.00 0.00 4.06
2390 4845 2.300723 TGTAACCCGACTACAACTGCAT 59.699 45.455 0.00 0.00 0.00 3.96
2391 4846 1.687660 TGTAACCCGACTACAACTGCA 59.312 47.619 0.00 0.00 0.00 4.41
2392 4847 2.443887 TGTAACCCGACTACAACTGC 57.556 50.000 0.00 0.00 0.00 4.40
2396 4851 1.340889 AGCGTTGTAACCCGACTACAA 59.659 47.619 0.00 0.00 37.01 2.41
2397 4852 0.961019 AGCGTTGTAACCCGACTACA 59.039 50.000 0.00 0.00 0.00 2.74
2398 4853 1.723003 CAAGCGTTGTAACCCGACTAC 59.277 52.381 0.00 0.00 0.00 2.73
2399 4854 1.340889 ACAAGCGTTGTAACCCGACTA 59.659 47.619 2.19 0.00 43.27 2.59
2400 4855 0.105408 ACAAGCGTTGTAACCCGACT 59.895 50.000 2.19 0.00 43.27 4.18
2401 4856 2.608640 ACAAGCGTTGTAACCCGAC 58.391 52.632 2.19 0.00 43.27 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.