Multiple sequence alignment - TraesCS3B01G260800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G260800 chr3B 100.000 5073 0 0 468 5540 418722456 418717384 0.000000e+00 9369.0
1 TraesCS3B01G260800 chr3B 91.732 254 19 2 3183 3435 154763567 154763315 8.830000e-93 351.0
2 TraesCS3B01G260800 chr3B 93.671 237 12 3 3207 3441 172022875 172023110 8.830000e-93 351.0
3 TraesCS3B01G260800 chr3B 93.617 235 14 1 3207 3441 559536683 559536450 3.180000e-92 350.0
4 TraesCS3B01G260800 chr3B 100.000 123 0 0 1 123 418722923 418722801 1.550000e-55 228.0
5 TraesCS3B01G260800 chr3A 94.633 1416 37 15 3435 4836 432375595 432374205 0.000000e+00 2158.0
6 TraesCS3B01G260800 chr3A 90.122 1316 52 25 1930 3186 432376888 432375592 0.000000e+00 1639.0
7 TraesCS3B01G260800 chr3A 93.179 733 39 5 546 1274 432378286 432377561 0.000000e+00 1066.0
8 TraesCS3B01G260800 chr3A 93.634 644 24 11 1273 1902 432377527 432376887 0.000000e+00 946.0
9 TraesCS3B01G260800 chr3A 87.600 500 58 4 4833 5329 584027973 584028471 1.340000e-160 577.0
10 TraesCS3B01G260800 chr3A 94.894 235 11 1 3207 3441 584093439 584093672 3.150000e-97 366.0
11 TraesCS3B01G260800 chr3A 92.308 104 8 0 20 123 432380307 432380204 1.240000e-31 148.0
12 TraesCS3B01G260800 chr3D 86.691 1946 98 61 1269 3156 302266072 302267914 0.000000e+00 2010.0
13 TraesCS3B01G260800 chr3D 93.521 957 36 10 3889 4836 302268660 302269599 0.000000e+00 1400.0
14 TraesCS3B01G260800 chr3D 94.206 535 19 4 612 1143 302265411 302265936 0.000000e+00 806.0
15 TraesCS3B01G260800 chr3D 95.074 406 9 1 3443 3848 302268268 302268662 3.640000e-176 628.0
16 TraesCS3B01G260800 chr3D 87.500 504 57 6 4829 5329 123619049 123618549 1.340000e-160 577.0
17 TraesCS3B01G260800 chr3D 87.174 499 58 6 4833 5329 29494027 29493533 3.750000e-156 562.0
18 TraesCS3B01G260800 chr3D 86.974 499 59 6 4833 5329 29528956 29528462 1.740000e-154 556.0
19 TraesCS3B01G260800 chr3D 85.974 385 20 17 2262 2637 570946363 570946722 1.130000e-101 381.0
20 TraesCS3B01G260800 chr3D 96.522 115 4 0 9 123 302265106 302265220 2.040000e-44 191.0
21 TraesCS3B01G260800 chr7D 87.776 499 57 4 4834 5329 80797957 80797460 1.030000e-161 580.0
22 TraesCS3B01G260800 chrUn 87.776 499 55 6 4833 5329 223002374 223001880 3.720000e-161 579.0
23 TraesCS3B01G260800 chrUn 96.154 52 2 0 2586 2637 264960859 264960910 9.890000e-13 86.1
24 TraesCS3B01G260800 chrUn 97.959 49 1 0 2589 2637 359434601 359434553 9.890000e-13 86.1
25 TraesCS3B01G260800 chr7B 87.375 499 59 4 4834 5329 28489752 28489255 2.240000e-158 569.0
26 TraesCS3B01G260800 chr6D 86.905 504 60 6 4831 5329 451958365 451957863 1.350000e-155 560.0
27 TraesCS3B01G260800 chr1D 87.026 501 57 8 4833 5329 439108967 439108471 4.850000e-155 558.0
28 TraesCS3B01G260800 chr5D 88.103 311 20 10 2275 2578 557305868 557305568 2.460000e-93 353.0
29 TraesCS3B01G260800 chr5D 93.617 235 14 1 3207 3441 419384127 419384360 3.180000e-92 350.0
30 TraesCS3B01G260800 chr1B 93.644 236 14 1 3207 3441 604959634 604959399 8.830000e-93 351.0
31 TraesCS3B01G260800 chr1B 93.562 233 14 1 3207 3439 548922541 548922310 4.110000e-91 346.0
32 TraesCS3B01G260800 chr2A 94.323 229 12 1 3207 3435 723523258 723523031 3.180000e-92 350.0
33 TraesCS3B01G260800 chr2A 87.147 319 25 8 2253 2564 725178054 725178363 1.140000e-91 348.0
34 TraesCS3B01G260800 chr5B 91.270 252 21 1 3185 3435 439691185 439691436 5.310000e-90 342.0
35 TraesCS3B01G260800 chr7A 96.154 52 2 0 2586 2637 544855847 544855898 9.890000e-13 86.1
36 TraesCS3B01G260800 chr6A 97.959 49 1 0 2589 2637 567412105 567412057 9.890000e-13 86.1
37 TraesCS3B01G260800 chr5A 96.154 52 2 0 2586 2637 631886298 631886349 9.890000e-13 86.1
38 TraesCS3B01G260800 chr5A 100.000 42 0 0 3185 3226 567885548 567885507 1.650000e-10 78.7
39 TraesCS3B01G260800 chr5A 97.778 45 1 0 3182 3226 662536219 662536263 1.650000e-10 78.7
40 TraesCS3B01G260800 chr5A 92.593 54 3 1 3180 3232 673688865 673688812 5.950000e-10 76.8
41 TraesCS3B01G260800 chr4A 96.154 52 2 0 2586 2637 608905354 608905405 9.890000e-13 86.1
42 TraesCS3B01G260800 chr6B 97.872 47 1 0 3178 3224 289684911 289684865 1.280000e-11 82.4
43 TraesCS3B01G260800 chr6B 100.000 44 0 0 3183 3226 345803871 345803828 1.280000e-11 82.4
44 TraesCS3B01G260800 chr6B 92.727 55 2 2 3174 3226 87525958 87526012 1.650000e-10 78.7
45 TraesCS3B01G260800 chr6B 94.000 50 3 0 3178 3227 475037965 475038014 5.950000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G260800 chr3B 418717384 418722923 5539 True 4798.5 9369 100.0000 1 5540 2 chr3B.!!$R3 5539
1 TraesCS3B01G260800 chr3A 432374205 432380307 6102 True 1191.4 2158 92.7752 20 4836 5 chr3A.!!$R1 4816
2 TraesCS3B01G260800 chr3D 302265106 302269599 4493 False 1007.0 2010 93.2028 9 4836 5 chr3D.!!$F2 4827
3 TraesCS3B01G260800 chr3D 123618549 123619049 500 True 577.0 577 87.5000 4829 5329 1 chr3D.!!$R3 500
4 TraesCS3B01G260800 chr6D 451957863 451958365 502 True 560.0 560 86.9050 4831 5329 1 chr6D.!!$R1 498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
494 495 0.394565 GCGGGCATCTGAACTCCTAT 59.605 55.0 0.00 0.0 0.00 2.57 F
1263 3030 0.171231 GCTTCGGGAAGAAATGCACC 59.829 55.0 12.42 0.0 40.79 5.01 F
2941 4820 0.111061 AGGCAATGCTTGTCTGGTCA 59.889 50.0 4.82 0.0 45.39 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 3826 0.035630 ACTACCGAGCAGTACCGACT 60.036 55.0 0.00 0.00 35.80 4.18 R
3262 5172 0.406361 TTTACATGGGTCCCACCACC 59.594 55.0 14.57 0.00 44.72 4.61 R
4779 6778 0.240411 GAGAACGCGCGACCCTATAT 59.760 55.0 39.36 8.45 0.00 0.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 4.547367 GGCTTGGGCGGCGTCTAT 62.547 66.667 12.73 0.00 39.81 1.98
67 68 3.426117 CTTGGGCGGCGTCTATCGT 62.426 63.158 12.73 0.00 42.13 3.73
86 87 2.665185 GTTCGACAAGGCCTGCGT 60.665 61.111 5.69 6.98 0.00 5.24
486 487 2.190313 GACATGGCGGGCATCTGA 59.810 61.111 14.79 0.00 0.00 3.27
493 494 1.686325 GGCGGGCATCTGAACTCCTA 61.686 60.000 0.00 0.00 0.00 2.94
494 495 0.394565 GCGGGCATCTGAACTCCTAT 59.605 55.000 0.00 0.00 0.00 2.57
512 513 6.375830 TCCTATAGAGCTCTCCTCGATTTA 57.624 41.667 22.17 0.00 45.54 1.40
564 2327 1.843368 AGACCAGTTCGGACCGATTA 58.157 50.000 19.12 0.00 38.63 1.75
587 2350 4.586841 AGCTGATCCACCTTAGATGACTAC 59.413 45.833 0.00 0.00 0.00 2.73
595 2358 5.053145 CACCTTAGATGACTACAAGCATCC 58.947 45.833 0.00 0.00 41.33 3.51
673 2436 2.060050 TCCCGGTCAAAGCAGAAAAA 57.940 45.000 0.00 0.00 0.00 1.94
708 2471 8.038944 GTCTCCAACAGTGTGAACCTAATAATA 58.961 37.037 0.00 0.00 0.00 0.98
770 2533 3.004839 TGCTCGCTCATAATAGAGTGGTC 59.995 47.826 4.88 0.00 44.28 4.02
931 2695 2.575532 TCTGTCTTTGTCTTGGCCTTG 58.424 47.619 3.32 0.00 0.00 3.61
946 2713 1.002792 CTTGGCCTCCTCCTCTCCT 59.997 63.158 3.32 0.00 0.00 3.69
1154 2921 1.221414 CTGCAAGTATAGCTTCCGCC 58.779 55.000 0.00 0.00 34.69 6.13
1155 2922 0.539518 TGCAAGTATAGCTTCCGCCA 59.460 50.000 0.00 0.00 34.69 5.69
1156 2923 1.140852 TGCAAGTATAGCTTCCGCCAT 59.859 47.619 0.00 0.00 34.69 4.40
1158 2925 2.996621 GCAAGTATAGCTTCCGCCATAG 59.003 50.000 0.00 0.00 34.69 2.23
1171 2938 1.860950 CGCCATAGAAGTTGGATCGTG 59.139 52.381 0.00 0.00 36.26 4.35
1198 2965 2.919229 CGTTCATGGCTTCAAATCTTGC 59.081 45.455 0.00 0.00 0.00 4.01
1199 2966 3.366679 CGTTCATGGCTTCAAATCTTGCT 60.367 43.478 0.00 0.00 0.00 3.91
1218 2985 4.002982 TGCTAGTGAACATCGCATTTCTT 58.997 39.130 0.00 0.00 0.00 2.52
1234 3001 2.050533 TTCGCGCATGCACAAACC 60.051 55.556 19.57 0.00 42.97 3.27
1263 3030 0.171231 GCTTCGGGAAGAAATGCACC 59.829 55.000 12.42 0.00 40.79 5.01
1313 3117 2.370519 TGTTCAAGTAACCAGCTGGCTA 59.629 45.455 33.06 22.61 37.27 3.93
1314 3118 3.181449 TGTTCAAGTAACCAGCTGGCTAA 60.181 43.478 33.06 15.41 37.27 3.09
1400 3208 8.658609 GTTTGCAACAATAATATCAGCAACAAT 58.341 29.630 0.00 0.00 39.83 2.71
1420 3228 3.727258 TGGCGGGAACATGAGGGG 61.727 66.667 0.00 0.00 0.00 4.79
1463 3271 4.516195 GGCGGCGAAGAGGAGGAC 62.516 72.222 12.98 0.00 0.00 3.85
1638 3446 0.327924 TCCACCCAATGCTTGTCGAT 59.672 50.000 0.00 0.00 0.00 3.59
1669 3477 6.313905 CAGTTTCCTGTACACTAATAGCTTGG 59.686 42.308 0.00 0.00 33.80 3.61
1703 3516 2.601763 GGCATGTAGTACACGCACTTAC 59.398 50.000 21.64 1.57 39.34 2.34
1704 3517 2.278094 GCATGTAGTACACGCACTTACG 59.722 50.000 16.06 0.00 37.25 3.18
1707 3520 4.740741 TGTAGTACACGCACTTACGTAA 57.259 40.909 7.94 7.94 46.34 3.18
1713 3526 9.096600 GTAGTACACGCACTTACGTAATAATAG 57.903 37.037 8.76 0.00 46.34 1.73
1716 3529 9.096600 GTACACGCACTTACGTAATAATAGTAG 57.903 37.037 8.76 3.48 46.34 2.57
1773 3591 0.454600 TCCACGGACGAGAGCATTAC 59.545 55.000 0.00 0.00 0.00 1.89
1866 3685 4.391830 GGACATTGAAGAGCACGATGTAAA 59.608 41.667 0.00 0.00 40.91 2.01
1873 3692 1.019278 AGCACGATGTAAACCCTGCG 61.019 55.000 0.00 0.00 0.00 5.18
1875 3694 0.719465 CACGATGTAAACCCTGCGAC 59.281 55.000 0.00 0.00 0.00 5.19
1932 3756 8.326713 GCACTGCTCGATCTTTGATTATATATG 58.673 37.037 0.00 0.00 0.00 1.78
1961 3785 3.266510 TCATGGGAAATCGAGACAAGG 57.733 47.619 0.00 0.00 0.00 3.61
1967 3791 2.500504 GGAAATCGAGACAAGGGGTACT 59.499 50.000 0.00 0.00 0.00 2.73
2002 3826 9.256477 CATTACTCGTTATTAGTGGCATTAGAA 57.744 33.333 0.00 0.00 0.00 2.10
2012 3836 3.119101 AGTGGCATTAGAAGTCGGTACTG 60.119 47.826 0.00 0.00 35.62 2.74
2031 3855 3.958798 ACTGCTCGGTAGTGGTACATTAT 59.041 43.478 0.00 0.00 44.52 1.28
2045 3869 2.695359 ACATTATCGAAACGGTGCACT 58.305 42.857 17.98 0.00 0.00 4.40
2090 3941 1.716503 AGGCAAATAAAGAGTGGGGGT 59.283 47.619 0.00 0.00 0.00 4.95
2279 4134 3.449018 AGTTACTCCTCCACATACAGCAG 59.551 47.826 0.00 0.00 0.00 4.24
2280 4135 1.944177 ACTCCTCCACATACAGCAGT 58.056 50.000 0.00 0.00 0.00 4.40
2281 4136 3.101643 ACTCCTCCACATACAGCAGTA 57.898 47.619 0.00 0.00 34.10 2.74
2349 4218 6.828785 ACTCCATATTTATTCACGCCTCTTTT 59.171 34.615 0.00 0.00 0.00 2.27
2350 4219 7.026631 TCCATATTTATTCACGCCTCTTTTG 57.973 36.000 0.00 0.00 0.00 2.44
2351 4220 5.687285 CCATATTTATTCACGCCTCTTTTGC 59.313 40.000 0.00 0.00 0.00 3.68
2374 4245 2.252072 TATGGACGGTGAAGGCCTGC 62.252 60.000 5.69 4.07 40.90 4.85
2480 4351 2.760634 TGGCGATCAAACTGAAGCTA 57.239 45.000 0.00 0.33 35.44 3.32
2564 4437 4.874199 TCCCCTTTAACTTGTTCCTGTTT 58.126 39.130 0.00 0.00 0.00 2.83
2663 4540 1.897802 ACCGTTAAGGGACTACCACTG 59.102 52.381 20.75 0.00 46.96 3.66
2672 4549 1.006878 GGACTACCACTGGTCTACCCT 59.993 57.143 3.21 0.00 37.09 4.34
2722 4599 8.276325 GCGGTCAGTATTAAGATAATCAAGTTG 58.724 37.037 0.00 0.00 0.00 3.16
2740 4617 8.106247 TCAAGTTGGTTGGCTTAATTTAGTAG 57.894 34.615 2.34 0.00 36.71 2.57
2741 4618 7.722285 TCAAGTTGGTTGGCTTAATTTAGTAGT 59.278 33.333 2.34 0.00 36.71 2.73
2742 4619 9.005777 CAAGTTGGTTGGCTTAATTTAGTAGTA 57.994 33.333 0.00 0.00 31.82 1.82
2743 4620 8.788325 AGTTGGTTGGCTTAATTTAGTAGTAG 57.212 34.615 0.00 0.00 0.00 2.57
2744 4621 8.380867 AGTTGGTTGGCTTAATTTAGTAGTAGT 58.619 33.333 0.00 0.00 0.00 2.73
2745 4622 9.657419 GTTGGTTGGCTTAATTTAGTAGTAGTA 57.343 33.333 0.00 0.00 0.00 1.82
2770 4647 0.896479 TTTTAGGAAACGGGCAGGGC 60.896 55.000 0.00 0.00 0.00 5.19
2796 4674 1.410153 GCCAATGCATTCAAGTAGGGG 59.590 52.381 9.53 6.38 37.47 4.79
2912 4790 4.675976 TTCTCCGTTGAAAGGTCAAGTA 57.324 40.909 0.00 0.00 44.44 2.24
2913 4791 4.675976 TCTCCGTTGAAAGGTCAAGTAA 57.324 40.909 0.00 0.00 44.44 2.24
2914 4792 5.223449 TCTCCGTTGAAAGGTCAAGTAAT 57.777 39.130 0.00 0.00 44.44 1.89
2915 4793 5.617252 TCTCCGTTGAAAGGTCAAGTAATT 58.383 37.500 0.00 0.00 44.44 1.40
2941 4820 0.111061 AGGCAATGCTTGTCTGGTCA 59.889 50.000 4.82 0.00 45.39 4.02
2942 4821 0.961019 GGCAATGCTTGTCTGGTCAA 59.039 50.000 4.82 0.00 31.13 3.18
3028 4924 1.730064 CTACTGGCGTAACGTTGCAAT 59.270 47.619 16.69 2.17 0.00 3.56
3109 5019 1.167851 TGGCTGTGCATGCTACTTTC 58.832 50.000 20.33 5.02 0.00 2.62
3144 5054 7.169308 TCGAGATTAAACTGAGTTGTTTCTGAC 59.831 37.037 0.00 0.00 40.23 3.51
3158 5068 1.890041 CTGACCCGCCGTTGTTCAA 60.890 57.895 0.00 0.00 0.00 2.69
3185 5095 7.554118 TCCAAAGAAACTTGCATAGAGGATTAG 59.446 37.037 0.00 0.00 0.00 1.73
3186 5096 7.201767 CCAAAGAAACTTGCATAGAGGATTAGG 60.202 40.741 0.00 0.00 0.00 2.69
3187 5097 5.934781 AGAAACTTGCATAGAGGATTAGGG 58.065 41.667 0.00 0.00 0.00 3.53
3189 5099 2.373502 ACTTGCATAGAGGATTAGGGCC 59.626 50.000 0.00 0.00 0.00 5.80
3190 5100 2.422939 TGCATAGAGGATTAGGGCCT 57.577 50.000 12.58 12.58 38.81 5.19
3191 5101 1.980765 TGCATAGAGGATTAGGGCCTG 59.019 52.381 18.53 0.00 35.44 4.85
3193 5103 2.373502 GCATAGAGGATTAGGGCCTGTT 59.626 50.000 18.53 2.37 35.44 3.16
3194 5104 3.181439 GCATAGAGGATTAGGGCCTGTTT 60.181 47.826 18.53 0.00 35.44 2.83
3195 5105 4.392940 CATAGAGGATTAGGGCCTGTTTG 58.607 47.826 18.53 0.00 35.44 2.93
3196 5106 1.566231 AGAGGATTAGGGCCTGTTTGG 59.434 52.381 18.53 0.00 35.44 3.28
3197 5107 1.285078 GAGGATTAGGGCCTGTTTGGT 59.715 52.381 18.53 0.00 35.44 3.67
3198 5108 1.716503 AGGATTAGGGCCTGTTTGGTT 59.283 47.619 18.53 0.00 38.35 3.67
3200 5110 2.496070 GGATTAGGGCCTGTTTGGTTTC 59.504 50.000 18.53 1.10 38.35 2.78
3201 5111 2.757894 TTAGGGCCTGTTTGGTTTCA 57.242 45.000 18.53 0.00 38.35 2.69
3202 5112 2.757894 TAGGGCCTGTTTGGTTTCAA 57.242 45.000 18.53 0.00 38.35 2.69
3203 5113 2.101640 AGGGCCTGTTTGGTTTCAAT 57.898 45.000 4.50 0.00 38.35 2.57
3204 5114 3.252554 AGGGCCTGTTTGGTTTCAATA 57.747 42.857 4.50 0.00 38.35 1.90
3205 5115 3.582164 AGGGCCTGTTTGGTTTCAATAA 58.418 40.909 4.50 0.00 38.35 1.40
3206 5116 3.578282 AGGGCCTGTTTGGTTTCAATAAG 59.422 43.478 4.50 0.00 38.35 1.73
3208 5118 4.556233 GGCCTGTTTGGTTTCAATAAGTC 58.444 43.478 0.00 0.00 38.35 3.01
3210 5120 4.982295 GCCTGTTTGGTTTCAATAAGTCAC 59.018 41.667 0.00 0.00 38.35 3.67
3211 5121 5.528870 CCTGTTTGGTTTCAATAAGTCACC 58.471 41.667 0.00 0.00 32.28 4.02
3212 5122 5.301805 CCTGTTTGGTTTCAATAAGTCACCT 59.698 40.000 0.00 0.00 32.28 4.00
3214 5124 5.888724 TGTTTGGTTTCAATAAGTCACCTGA 59.111 36.000 0.00 0.00 32.28 3.86
3241 5151 2.156343 GTCACCTGACACACCTTCTC 57.844 55.000 0.31 0.00 44.18 2.87
3242 5152 1.412710 GTCACCTGACACACCTTCTCA 59.587 52.381 0.31 0.00 44.18 3.27
3243 5153 1.412710 TCACCTGACACACCTTCTCAC 59.587 52.381 0.00 0.00 0.00 3.51
3244 5154 1.138859 CACCTGACACACCTTCTCACA 59.861 52.381 0.00 0.00 0.00 3.58
3245 5155 2.050144 ACCTGACACACCTTCTCACAT 58.950 47.619 0.00 0.00 0.00 3.21
3246 5156 2.037772 ACCTGACACACCTTCTCACATC 59.962 50.000 0.00 0.00 0.00 3.06
3249 5159 4.321718 CTGACACACCTTCTCACATCAAT 58.678 43.478 0.00 0.00 0.00 2.57
3250 5160 4.318332 TGACACACCTTCTCACATCAATC 58.682 43.478 0.00 0.00 0.00 2.67
3251 5161 4.202346 TGACACACCTTCTCACATCAATCA 60.202 41.667 0.00 0.00 0.00 2.57
3252 5162 4.717877 ACACACCTTCTCACATCAATCAA 58.282 39.130 0.00 0.00 0.00 2.57
3255 5165 5.182570 CACACCTTCTCACATCAATCAACAT 59.817 40.000 0.00 0.00 0.00 2.71
3256 5166 5.413833 ACACCTTCTCACATCAATCAACATC 59.586 40.000 0.00 0.00 0.00 3.06
3257 5167 5.413523 CACCTTCTCACATCAATCAACATCA 59.586 40.000 0.00 0.00 0.00 3.07
3260 5170 5.494632 TCTCACATCAATCAACATCATGC 57.505 39.130 0.00 0.00 0.00 4.06
3261 5171 4.944930 TCTCACATCAATCAACATCATGCA 59.055 37.500 0.00 0.00 0.00 3.96
3262 5172 5.065988 TCTCACATCAATCAACATCATGCAG 59.934 40.000 0.00 0.00 0.00 4.41
3265 5175 4.142249 ACATCAATCAACATCATGCAGGTG 60.142 41.667 0.00 0.00 0.00 4.00
3266 5176 2.756207 TCAATCAACATCATGCAGGTGG 59.244 45.455 0.00 0.00 0.00 4.61
3267 5177 2.494471 CAATCAACATCATGCAGGTGGT 59.506 45.455 0.00 0.00 0.00 4.16
3268 5178 1.536940 TCAACATCATGCAGGTGGTG 58.463 50.000 11.19 11.19 36.30 4.17
3269 5179 0.528924 CAACATCATGCAGGTGGTGG 59.471 55.000 5.59 0.00 34.50 4.61
3271 5181 1.303948 CATCATGCAGGTGGTGGGA 59.696 57.895 0.00 0.00 0.00 4.37
3272 5182 1.033746 CATCATGCAGGTGGTGGGAC 61.034 60.000 0.00 0.00 0.00 4.46
3273 5183 2.215451 ATCATGCAGGTGGTGGGACC 62.215 60.000 0.00 0.00 39.22 4.46
3279 5189 1.162329 AGGTGGTGGGACCCATGTA 59.838 57.895 18.51 3.14 37.50 2.29
3280 5190 0.476808 AGGTGGTGGGACCCATGTAA 60.477 55.000 18.51 0.00 37.50 2.41
3283 5193 2.167662 GTGGTGGGACCCATGTAAAAG 58.832 52.381 18.51 0.00 37.50 2.27
3284 5194 1.076350 TGGTGGGACCCATGTAAAAGG 59.924 52.381 18.51 0.00 37.50 3.11
3291 5201 1.847328 CCCATGTAAAAGGGGGTGAC 58.153 55.000 0.00 0.00 46.96 3.67
3293 5203 2.225267 CCCATGTAAAAGGGGGTGACTT 60.225 50.000 0.00 0.00 46.96 3.01
3294 5204 3.010808 CCCATGTAAAAGGGGGTGACTTA 59.989 47.826 0.00 0.00 46.96 2.24
3295 5205 4.325816 CCCATGTAAAAGGGGGTGACTTAT 60.326 45.833 0.00 0.00 46.96 1.73
3296 5206 5.103855 CCCATGTAAAAGGGGGTGACTTATA 60.104 44.000 0.00 0.00 46.96 0.98
3297 5207 6.428295 CCATGTAAAAGGGGGTGACTTATAA 58.572 40.000 0.00 0.00 0.00 0.98
3298 5208 6.546034 CCATGTAAAAGGGGGTGACTTATAAG 59.454 42.308 11.05 11.05 0.00 1.73
3299 5209 6.707273 TGTAAAAGGGGGTGACTTATAAGT 57.293 37.500 18.05 18.05 43.16 2.24
3300 5210 7.093965 TGTAAAAGGGGGTGACTTATAAGTT 57.906 36.000 18.96 3.63 39.88 2.66
3302 5212 8.005976 TGTAAAAGGGGGTGACTTATAAGTTTT 58.994 33.333 18.96 14.10 39.88 2.43
3305 5215 8.645814 AAAGGGGGTGACTTATAAGTTTTAAG 57.354 34.615 18.96 10.49 39.88 1.85
3306 5216 7.339177 AGGGGGTGACTTATAAGTTTTAAGT 57.661 36.000 18.96 15.86 41.41 2.24
3308 5218 7.668469 AGGGGGTGACTTATAAGTTTTAAGTTG 59.332 37.037 18.96 0.00 39.40 3.16
3309 5219 7.094075 GGGGGTGACTTATAAGTTTTAAGTTGG 60.094 40.741 18.96 0.00 39.40 3.77
3311 5221 7.094075 GGGTGACTTATAAGTTTTAAGTTGGGG 60.094 40.741 18.96 0.00 39.40 4.96
3312 5222 7.449395 GGTGACTTATAAGTTTTAAGTTGGGGT 59.551 37.037 18.96 0.00 39.40 4.95
3313 5223 8.294577 GTGACTTATAAGTTTTAAGTTGGGGTG 58.705 37.037 18.96 0.00 39.40 4.61
3315 5225 7.528675 ACTTATAAGTTTTAAGTTGGGGTGGA 58.471 34.615 12.50 0.00 36.70 4.02
3317 5227 6.659745 ATAAGTTTTAAGTTGGGGTGGAAC 57.340 37.500 0.00 0.00 0.00 3.62
3318 5228 3.983821 AGTTTTAAGTTGGGGTGGAACA 58.016 40.909 0.00 0.00 39.98 3.18
3358 5268 5.294734 TGGGGTAACTTATAATTCGGGTC 57.705 43.478 0.00 0.00 0.00 4.46
3359 5269 4.970640 TGGGGTAACTTATAATTCGGGTCT 59.029 41.667 0.00 0.00 0.00 3.85
3360 5270 5.163280 TGGGGTAACTTATAATTCGGGTCTG 60.163 44.000 0.00 0.00 0.00 3.51
3363 5273 6.825213 GGGTAACTTATAATTCGGGTCTGTTT 59.175 38.462 0.00 0.00 0.00 2.83
3364 5274 7.201670 GGGTAACTTATAATTCGGGTCTGTTTG 60.202 40.741 0.00 0.00 0.00 2.93
3365 5275 6.753107 AACTTATAATTCGGGTCTGTTTGG 57.247 37.500 0.00 0.00 0.00 3.28
3366 5276 4.638865 ACTTATAATTCGGGTCTGTTTGGC 59.361 41.667 0.00 0.00 0.00 4.52
3367 5277 2.570415 TAATTCGGGTCTGTTTGGCA 57.430 45.000 0.00 0.00 0.00 4.92
3368 5278 1.698506 AATTCGGGTCTGTTTGGCAA 58.301 45.000 0.00 0.00 0.00 4.52
3372 5282 2.865079 TCGGGTCTGTTTGGCAAAATA 58.135 42.857 15.29 6.13 0.00 1.40
3373 5283 3.223435 TCGGGTCTGTTTGGCAAAATAA 58.777 40.909 15.29 2.73 0.00 1.40
3374 5284 3.254657 TCGGGTCTGTTTGGCAAAATAAG 59.745 43.478 15.29 12.47 0.00 1.73
3376 5286 4.556233 GGGTCTGTTTGGCAAAATAAGTC 58.444 43.478 15.29 10.05 0.00 3.01
3377 5287 4.038642 GGGTCTGTTTGGCAAAATAAGTCA 59.961 41.667 15.29 6.39 0.00 3.41
3378 5288 5.279456 GGGTCTGTTTGGCAAAATAAGTCAT 60.279 40.000 15.29 0.00 0.00 3.06
3380 5290 6.705825 GGTCTGTTTGGCAAAATAAGTCATTT 59.294 34.615 15.29 0.00 38.54 2.32
3381 5291 7.095649 GGTCTGTTTGGCAAAATAAGTCATTTC 60.096 37.037 15.29 0.00 35.74 2.17
3382 5292 7.653311 GTCTGTTTGGCAAAATAAGTCATTTCT 59.347 33.333 15.29 0.00 35.74 2.52
3383 5293 8.203485 TCTGTTTGGCAAAATAAGTCATTTCTT 58.797 29.630 15.29 0.00 35.74 2.52
3384 5294 8.729805 TGTTTGGCAAAATAAGTCATTTCTTT 57.270 26.923 15.29 0.00 35.74 2.52
3427 5337 8.936070 AGTTGGTGACTTATTTAAAACCAAAC 57.064 30.769 17.37 12.90 46.21 2.93
3428 5338 8.532819 AGTTGGTGACTTATTTAAAACCAAACA 58.467 29.630 17.37 0.00 46.21 2.83
3429 5339 8.813282 GTTGGTGACTTATTTAAAACCAAACAG 58.187 33.333 17.37 0.00 46.21 3.16
3430 5340 7.493367 TGGTGACTTATTTAAAACCAAACAGG 58.507 34.615 4.98 0.00 45.67 4.00
3431 5341 6.422701 GGTGACTTATTTAAAACCAAACAGGC 59.577 38.462 0.00 0.00 43.14 4.85
3433 5343 5.860611 ACTTATTTAAAACCAAACAGGCCC 58.139 37.500 0.00 0.00 43.14 5.80
3434 5344 5.605069 ACTTATTTAAAACCAAACAGGCCCT 59.395 36.000 0.00 0.00 43.14 5.19
3435 5345 6.100569 ACTTATTTAAAACCAAACAGGCCCTT 59.899 34.615 0.00 0.00 43.14 3.95
3470 5453 5.991328 AATGTAGTGATAACGCCAATCAG 57.009 39.130 0.00 0.00 34.12 2.90
3492 5478 8.470657 TCAGACTAGTGATAATATGCTTGTCT 57.529 34.615 0.00 10.33 41.87 3.41
3493 5479 8.918116 TCAGACTAGTGATAATATGCTTGTCTT 58.082 33.333 0.00 2.12 40.23 3.01
3799 5785 1.959085 CACGTGCAAGCCTGGAAAT 59.041 52.632 0.82 0.00 0.00 2.17
3861 5847 0.603975 AAGTGGAGCAAGTCGAAGGC 60.604 55.000 0.00 0.00 0.00 4.35
3862 5848 2.035442 GTGGAGCAAGTCGAAGGCC 61.035 63.158 0.00 0.00 0.00 5.19
3863 5849 2.347490 GGAGCAAGTCGAAGGCCA 59.653 61.111 5.01 0.00 0.00 5.36
3864 5850 1.078143 GGAGCAAGTCGAAGGCCAT 60.078 57.895 5.01 0.00 0.00 4.40
3865 5851 1.372087 GGAGCAAGTCGAAGGCCATG 61.372 60.000 5.01 0.00 0.00 3.66
3866 5852 1.372087 GAGCAAGTCGAAGGCCATGG 61.372 60.000 7.63 7.63 0.00 3.66
3867 5853 3.056313 GCAAGTCGAAGGCCATGGC 62.056 63.158 29.47 29.47 41.06 4.40
3914 5900 0.804989 GTCATTGGCCTTCCTTCACG 59.195 55.000 3.32 0.00 0.00 4.35
3918 5904 0.036388 TTGGCCTTCCTTCACGCTAG 60.036 55.000 3.32 0.00 0.00 3.42
3920 5906 1.614241 GGCCTTCCTTCACGCTAGGA 61.614 60.000 0.00 0.00 40.01 2.94
4032 6018 2.396700 TGCTATGCATCTGGTTGCG 58.603 52.632 0.19 0.00 45.77 4.85
4044 6030 1.155424 TGGTTGCGTTCTGTTCCGTC 61.155 55.000 0.00 0.00 0.00 4.79
4124 6113 4.450080 CCGTTAACTTGAAGTGTAGGTTCC 59.550 45.833 0.00 0.00 0.00 3.62
4125 6114 4.149396 CGTTAACTTGAAGTGTAGGTTCCG 59.851 45.833 0.00 0.00 0.00 4.30
4126 6115 5.291971 GTTAACTTGAAGTGTAGGTTCCGA 58.708 41.667 0.00 0.00 0.00 4.55
4127 6116 4.618920 AACTTGAAGTGTAGGTTCCGAT 57.381 40.909 0.00 0.00 0.00 4.18
4150 6139 4.881273 TCGAGGTTCAATGTTCCATTATGG 59.119 41.667 4.57 4.57 39.43 2.74
4225 6220 2.969950 AGTGGTACTGGTTGAGTTGCTA 59.030 45.455 0.00 0.00 35.96 3.49
4238 6233 7.496920 TGGTTGAGTTGCTATAATCTGAATGAG 59.503 37.037 0.00 0.00 0.00 2.90
4641 6640 9.850628 AAGTCTTTGTGTAAATTGATGATGATG 57.149 29.630 0.00 0.00 0.00 3.07
4642 6641 9.234827 AGTCTTTGTGTAAATTGATGATGATGA 57.765 29.630 0.00 0.00 0.00 2.92
4652 6651 6.956202 ATTGATGATGATGAAGGAGGAAAC 57.044 37.500 0.00 0.00 0.00 2.78
4696 6695 3.494254 TGTGGGGTTTGGAGGCGT 61.494 61.111 0.00 0.00 0.00 5.68
4699 6698 3.647771 GGGGTTTGGAGGCGTCCT 61.648 66.667 24.96 0.00 44.30 3.85
4750 6749 3.679502 CGCCATGGACAAAAGAAAAATCC 59.320 43.478 18.40 0.00 0.00 3.01
4778 6777 7.707624 TTCATTTGCTCATTTGGTCTTCTAT 57.292 32.000 0.00 0.00 0.00 1.98
4779 6778 8.806429 TTCATTTGCTCATTTGGTCTTCTATA 57.194 30.769 0.00 0.00 0.00 1.31
4780 6779 8.985315 TCATTTGCTCATTTGGTCTTCTATAT 57.015 30.769 0.00 0.00 0.00 0.86
4807 6809 2.154389 GTCGCGCGTTCTCTTCTTAAAA 59.846 45.455 30.98 1.00 0.00 1.52
4988 6991 1.001268 TCGCGGTATCAATCTCTGCTC 60.001 52.381 6.13 0.00 0.00 4.26
4997 7001 7.601886 CGGTATCAATCTCTGCTCAAGAAATAT 59.398 37.037 0.00 0.00 33.37 1.28
5011 7015 7.377766 TCAAGAAATATTCCAAAGACTTCGG 57.622 36.000 0.00 0.00 0.00 4.30
5019 7023 4.950205 TCCAAAGACTTCGGTAAAGAGT 57.050 40.909 0.00 0.00 38.44 3.24
5029 7033 4.265904 TCGGTAAAGAGTCTGCAATTGA 57.734 40.909 10.34 0.00 0.00 2.57
5034 7038 5.239525 GGTAAAGAGTCTGCAATTGAACTGT 59.760 40.000 10.34 4.86 0.00 3.55
5073 7077 0.309302 TTTCACCCGCACGAACATTG 59.691 50.000 0.00 0.00 0.00 2.82
5182 7186 0.893727 CCCTAAAAGTGCAGGCCGTT 60.894 55.000 0.00 0.00 0.00 4.44
5204 7208 8.088365 CCGTTGAATCACTATATCTTCACCATA 58.912 37.037 0.00 0.00 0.00 2.74
5225 7229 4.543590 AGTGTCGATGGAAGATTTCACT 57.456 40.909 0.00 0.00 0.00 3.41
5232 7236 5.409520 TCGATGGAAGATTTCACTTTCACAG 59.590 40.000 0.00 0.00 38.07 3.66
5234 7238 6.401903 CGATGGAAGATTTCACTTTCACAGAG 60.402 42.308 0.00 0.00 38.07 3.35
5240 7244 7.432350 AGATTTCACTTTCACAGAGAATCAC 57.568 36.000 0.00 0.00 37.82 3.06
5246 7250 5.240183 CACTTTCACAGAGAATCACACCAAT 59.760 40.000 0.00 0.00 37.82 3.16
5279 7284 7.334421 AGCTTGACACGACAATATAAACTCATT 59.666 33.333 0.00 0.00 0.00 2.57
5336 7341 7.772332 AACTCTCTAACCTAATGCAATAACG 57.228 36.000 0.00 0.00 0.00 3.18
5337 7342 7.108841 ACTCTCTAACCTAATGCAATAACGA 57.891 36.000 0.00 0.00 0.00 3.85
5338 7343 6.979238 ACTCTCTAACCTAATGCAATAACGAC 59.021 38.462 0.00 0.00 0.00 4.34
5339 7344 6.869695 TCTCTAACCTAATGCAATAACGACA 58.130 36.000 0.00 0.00 0.00 4.35
5340 7345 7.497595 TCTCTAACCTAATGCAATAACGACAT 58.502 34.615 0.00 0.00 0.00 3.06
5341 7346 8.635328 TCTCTAACCTAATGCAATAACGACATA 58.365 33.333 0.00 0.00 0.00 2.29
5342 7347 9.424319 CTCTAACCTAATGCAATAACGACATAT 57.576 33.333 0.00 0.00 0.00 1.78
5343 7348 9.772973 TCTAACCTAATGCAATAACGACATATT 57.227 29.630 0.00 0.00 0.00 1.28
5346 7351 8.220755 ACCTAATGCAATAACGACATATTTGT 57.779 30.769 0.00 0.00 39.32 2.83
5362 7367 7.830739 ACATATTTGTCTTCACTTTTGATCCC 58.169 34.615 0.00 0.00 0.00 3.85
5363 7368 7.671398 ACATATTTGTCTTCACTTTTGATCCCT 59.329 33.333 0.00 0.00 0.00 4.20
5364 7369 6.983906 ATTTGTCTTCACTTTTGATCCCTT 57.016 33.333 0.00 0.00 0.00 3.95
5365 7370 5.772825 TTGTCTTCACTTTTGATCCCTTG 57.227 39.130 0.00 0.00 0.00 3.61
5366 7371 4.792068 TGTCTTCACTTTTGATCCCTTGT 58.208 39.130 0.00 0.00 0.00 3.16
5367 7372 5.200483 TGTCTTCACTTTTGATCCCTTGTT 58.800 37.500 0.00 0.00 0.00 2.83
5368 7373 5.299279 TGTCTTCACTTTTGATCCCTTGTTC 59.701 40.000 0.00 0.00 0.00 3.18
5369 7374 4.827284 TCTTCACTTTTGATCCCTTGTTCC 59.173 41.667 0.00 0.00 0.00 3.62
5370 7375 4.177537 TCACTTTTGATCCCTTGTTCCA 57.822 40.909 0.00 0.00 0.00 3.53
5371 7376 4.541705 TCACTTTTGATCCCTTGTTCCAA 58.458 39.130 0.00 0.00 0.00 3.53
5372 7377 4.584325 TCACTTTTGATCCCTTGTTCCAAG 59.416 41.667 0.00 0.00 0.00 3.61
5373 7378 3.321968 ACTTTTGATCCCTTGTTCCAAGC 59.678 43.478 0.00 0.00 0.00 4.01
5374 7379 1.533625 TTGATCCCTTGTTCCAAGCG 58.466 50.000 0.00 0.00 0.00 4.68
5375 7380 0.322456 TGATCCCTTGTTCCAAGCGG 60.322 55.000 0.00 2.64 0.00 5.52
5376 7381 1.657751 GATCCCTTGTTCCAAGCGGC 61.658 60.000 0.00 0.00 0.00 6.53
5377 7382 3.737172 CCCTTGTTCCAAGCGGCG 61.737 66.667 0.51 0.51 0.00 6.46
5378 7383 4.404654 CCTTGTTCCAAGCGGCGC 62.405 66.667 26.86 26.86 0.00 6.53
5379 7384 3.659092 CTTGTTCCAAGCGGCGCA 61.659 61.111 35.02 10.65 0.00 6.09
5380 7385 3.879351 CTTGTTCCAAGCGGCGCAC 62.879 63.158 35.02 22.70 0.00 5.34
5382 7387 4.389576 GTTCCAAGCGGCGCACAG 62.390 66.667 35.02 21.74 0.00 3.66
5422 7427 3.276091 CACCAGGTGCAACGCGAA 61.276 61.111 15.93 0.00 38.12 4.70
5423 7428 2.972505 ACCAGGTGCAACGCGAAG 60.973 61.111 15.93 5.50 38.12 3.79
5461 7466 8.458573 AAACTTGTGACACAAATATACCAAGA 57.541 30.769 20.91 0.00 37.69 3.02
5462 7467 8.458573 AACTTGTGACACAAATATACCAAGAA 57.541 30.769 20.91 0.00 37.69 2.52
5463 7468 8.458573 ACTTGTGACACAAATATACCAAGAAA 57.541 30.769 20.91 0.00 37.69 2.52
5464 7469 8.908903 ACTTGTGACACAAATATACCAAGAAAA 58.091 29.630 20.91 0.00 37.69 2.29
5465 7470 9.743057 CTTGTGACACAAATATACCAAGAAAAA 57.257 29.630 20.91 0.00 37.69 1.94
5466 7471 9.743057 TTGTGACACAAATATACCAAGAAAAAG 57.257 29.630 18.56 0.00 34.76 2.27
5467 7472 9.126151 TGTGACACAAATATACCAAGAAAAAGA 57.874 29.630 5.62 0.00 0.00 2.52
5468 7473 9.612620 GTGACACAAATATACCAAGAAAAAGAG 57.387 33.333 0.00 0.00 0.00 2.85
5469 7474 9.349713 TGACACAAATATACCAAGAAAAAGAGT 57.650 29.630 0.00 0.00 0.00 3.24
5478 7483 6.884280 ACCAAGAAAAAGAGTATCCTTGTG 57.116 37.500 0.00 0.00 33.66 3.33
5479 7484 6.601332 ACCAAGAAAAAGAGTATCCTTGTGA 58.399 36.000 0.00 0.00 33.66 3.58
5480 7485 7.234355 ACCAAGAAAAAGAGTATCCTTGTGAT 58.766 34.615 0.00 0.00 37.49 3.06
5481 7486 7.175641 ACCAAGAAAAAGAGTATCCTTGTGATG 59.824 37.037 0.00 0.00 34.76 3.07
5482 7487 7.362401 CCAAGAAAAAGAGTATCCTTGTGATGG 60.362 40.741 0.00 0.00 34.76 3.51
5483 7488 6.784031 AGAAAAAGAGTATCCTTGTGATGGT 58.216 36.000 0.00 0.00 34.76 3.55
5484 7489 6.656693 AGAAAAAGAGTATCCTTGTGATGGTG 59.343 38.462 0.00 0.00 34.76 4.17
5485 7490 3.550437 AGAGTATCCTTGTGATGGTGC 57.450 47.619 0.00 0.00 34.76 5.01
5486 7491 3.110705 AGAGTATCCTTGTGATGGTGCT 58.889 45.455 0.00 0.00 34.76 4.40
5487 7492 3.521126 AGAGTATCCTTGTGATGGTGCTT 59.479 43.478 0.00 0.00 34.76 3.91
5488 7493 3.873952 GAGTATCCTTGTGATGGTGCTTC 59.126 47.826 0.00 0.00 34.76 3.86
5489 7494 3.521126 AGTATCCTTGTGATGGTGCTTCT 59.479 43.478 0.00 0.00 34.76 2.85
5490 7495 2.189594 TCCTTGTGATGGTGCTTCTG 57.810 50.000 0.00 0.00 0.00 3.02
5491 7496 1.421268 TCCTTGTGATGGTGCTTCTGT 59.579 47.619 0.00 0.00 0.00 3.41
5492 7497 1.808945 CCTTGTGATGGTGCTTCTGTC 59.191 52.381 0.00 0.00 0.00 3.51
5493 7498 2.551721 CCTTGTGATGGTGCTTCTGTCT 60.552 50.000 0.00 0.00 0.00 3.41
5494 7499 2.936919 TGTGATGGTGCTTCTGTCTT 57.063 45.000 0.00 0.00 0.00 3.01
5495 7500 2.771089 TGTGATGGTGCTTCTGTCTTC 58.229 47.619 0.00 0.00 0.00 2.87
5496 7501 2.104622 TGTGATGGTGCTTCTGTCTTCA 59.895 45.455 0.00 0.00 0.00 3.02
5497 7502 2.481952 GTGATGGTGCTTCTGTCTTCAC 59.518 50.000 0.00 0.00 0.00 3.18
5498 7503 2.369860 TGATGGTGCTTCTGTCTTCACT 59.630 45.455 0.00 0.00 0.00 3.41
5499 7504 3.181451 TGATGGTGCTTCTGTCTTCACTT 60.181 43.478 0.00 0.00 0.00 3.16
5500 7505 3.281727 TGGTGCTTCTGTCTTCACTTT 57.718 42.857 0.00 0.00 0.00 2.66
5501 7506 3.620488 TGGTGCTTCTGTCTTCACTTTT 58.380 40.909 0.00 0.00 0.00 2.27
5502 7507 3.378112 TGGTGCTTCTGTCTTCACTTTTG 59.622 43.478 0.00 0.00 0.00 2.44
5503 7508 3.627577 GGTGCTTCTGTCTTCACTTTTGA 59.372 43.478 0.00 0.00 0.00 2.69
5504 7509 4.496507 GGTGCTTCTGTCTTCACTTTTGAC 60.497 45.833 0.00 0.00 0.00 3.18
5505 7510 3.309682 TGCTTCTGTCTTCACTTTTGACG 59.690 43.478 0.00 0.00 33.81 4.35
5506 7511 3.555956 GCTTCTGTCTTCACTTTTGACGA 59.444 43.478 0.00 0.00 33.81 4.20
5507 7512 4.551024 GCTTCTGTCTTCACTTTTGACGAC 60.551 45.833 4.73 4.73 46.45 4.34
5509 7514 2.280764 GTCTTCACTTTTGACGACGC 57.719 50.000 0.00 0.00 40.17 5.19
5510 7515 1.859080 GTCTTCACTTTTGACGACGCT 59.141 47.619 0.00 0.00 40.17 5.07
5511 7516 2.284417 GTCTTCACTTTTGACGACGCTT 59.716 45.455 0.00 0.00 40.17 4.68
5512 7517 2.538449 TCTTCACTTTTGACGACGCTTC 59.462 45.455 0.00 0.00 0.00 3.86
5513 7518 1.214367 TCACTTTTGACGACGCTTCC 58.786 50.000 0.00 0.00 0.00 3.46
5514 7519 1.202486 TCACTTTTGACGACGCTTCCT 60.202 47.619 0.00 0.00 0.00 3.36
5515 7520 2.034939 TCACTTTTGACGACGCTTCCTA 59.965 45.455 0.00 0.00 0.00 2.94
5516 7521 2.993899 CACTTTTGACGACGCTTCCTAT 59.006 45.455 0.00 0.00 0.00 2.57
5517 7522 3.432252 CACTTTTGACGACGCTTCCTATT 59.568 43.478 0.00 0.00 0.00 1.73
5518 7523 4.062991 ACTTTTGACGACGCTTCCTATTT 58.937 39.130 0.00 0.00 0.00 1.40
5519 7524 4.084013 ACTTTTGACGACGCTTCCTATTTG 60.084 41.667 0.00 0.00 0.00 2.32
5520 7525 3.306917 TTGACGACGCTTCCTATTTGA 57.693 42.857 0.00 0.00 0.00 2.69
5521 7526 2.602878 TGACGACGCTTCCTATTTGAC 58.397 47.619 0.00 0.00 0.00 3.18
5522 7527 1.582502 GACGACGCTTCCTATTTGACG 59.417 52.381 0.00 0.00 0.00 4.35
5523 7528 0.297820 CGACGCTTCCTATTTGACGC 59.702 55.000 0.00 0.00 0.00 5.19
5524 7529 1.641577 GACGCTTCCTATTTGACGCT 58.358 50.000 0.00 0.00 0.00 5.07
5525 7530 2.000447 GACGCTTCCTATTTGACGCTT 59.000 47.619 0.00 0.00 0.00 4.68
5526 7531 2.000447 ACGCTTCCTATTTGACGCTTC 59.000 47.619 0.00 0.00 0.00 3.86
5527 7532 1.999735 CGCTTCCTATTTGACGCTTCA 59.000 47.619 0.00 0.00 0.00 3.02
5528 7533 2.029728 CGCTTCCTATTTGACGCTTCAG 59.970 50.000 0.00 0.00 31.71 3.02
5529 7534 3.262420 GCTTCCTATTTGACGCTTCAGA 58.738 45.455 0.00 0.00 31.71 3.27
5530 7535 3.062774 GCTTCCTATTTGACGCTTCAGAC 59.937 47.826 0.00 0.00 31.71 3.51
5531 7536 3.953712 TCCTATTTGACGCTTCAGACA 57.046 42.857 0.00 0.00 31.71 3.41
5532 7537 3.585862 TCCTATTTGACGCTTCAGACAC 58.414 45.455 0.00 0.00 31.71 3.67
5533 7538 2.673368 CCTATTTGACGCTTCAGACACC 59.327 50.000 0.00 0.00 31.71 4.16
5534 7539 2.550830 ATTTGACGCTTCAGACACCT 57.449 45.000 0.00 0.00 31.71 4.00
5535 7540 1.581934 TTTGACGCTTCAGACACCTG 58.418 50.000 0.00 0.00 41.74 4.00
5536 7541 0.464036 TTGACGCTTCAGACACCTGT 59.536 50.000 0.00 0.00 41.16 4.00
5537 7542 0.464036 TGACGCTTCAGACACCTGTT 59.536 50.000 0.00 0.00 41.16 3.16
5538 7543 1.684450 TGACGCTTCAGACACCTGTTA 59.316 47.619 0.00 0.00 41.16 2.41
5539 7544 2.059541 GACGCTTCAGACACCTGTTAC 58.940 52.381 0.00 0.00 41.16 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.177401 TGGATCTGGTCGTCACTCAG 58.823 55.000 0.00 0.00 0.00 3.35
1 2 1.546029 CTTGGATCTGGTCGTCACTCA 59.454 52.381 0.00 0.00 0.00 3.41
2 3 1.819288 TCTTGGATCTGGTCGTCACTC 59.181 52.381 0.00 0.00 0.00 3.51
3 4 1.821753 CTCTTGGATCTGGTCGTCACT 59.178 52.381 0.00 0.00 0.00 3.41
4 5 1.819288 TCTCTTGGATCTGGTCGTCAC 59.181 52.381 0.00 0.00 0.00 3.67
6 7 2.096248 ACTCTCTTGGATCTGGTCGTC 58.904 52.381 0.00 0.00 0.00 4.20
7 8 2.223803 ACTCTCTTGGATCTGGTCGT 57.776 50.000 0.00 0.00 0.00 4.34
67 68 2.281484 GCAGGCCTTGTCGAACCA 60.281 61.111 0.00 0.00 0.00 3.67
86 87 2.443390 GTAGCCCCTAGGACGCCA 60.443 66.667 11.48 0.00 33.47 5.69
479 480 5.059404 GAGCTCTATAGGAGTTCAGATGC 57.941 47.826 6.43 0.00 46.88 3.91
486 487 3.649023 TCGAGGAGAGCTCTATAGGAGTT 59.351 47.826 18.25 0.00 43.62 3.01
493 494 4.993028 ACCTAAATCGAGGAGAGCTCTAT 58.007 43.478 18.25 8.61 39.15 1.98
494 495 4.391155 GACCTAAATCGAGGAGAGCTCTA 58.609 47.826 18.25 0.00 39.15 2.43
528 529 2.876550 GGTCTATATGTTGAAACCCCGC 59.123 50.000 0.00 0.00 0.00 6.13
529 530 4.127171 CTGGTCTATATGTTGAAACCCCG 58.873 47.826 0.00 0.00 0.00 5.73
530 531 5.112129 ACTGGTCTATATGTTGAAACCCC 57.888 43.478 0.00 0.00 0.00 4.95
531 532 5.293569 CGAACTGGTCTATATGTTGAAACCC 59.706 44.000 0.00 0.00 0.00 4.11
532 533 5.293569 CCGAACTGGTCTATATGTTGAAACC 59.706 44.000 0.00 0.00 0.00 3.27
564 2327 3.652055 AGTCATCTAAGGTGGATCAGCT 58.348 45.455 0.00 0.00 44.48 4.24
587 2350 0.378257 CCAATCCGTTCGGATGCTTG 59.622 55.000 24.28 19.12 43.58 4.01
603 2366 1.519751 CCCGCAAATGTCCGAACCAA 61.520 55.000 0.00 0.00 0.00 3.67
608 2371 0.820074 AAACACCCGCAAATGTCCGA 60.820 50.000 0.00 0.00 0.00 4.55
610 2373 1.067821 TCAAAACACCCGCAAATGTCC 59.932 47.619 0.00 0.00 0.00 4.02
613 2376 1.984990 CGATCAAAACACCCGCAAATG 59.015 47.619 0.00 0.00 0.00 2.32
673 2436 3.326006 ACACTGTTGGAGACATCATGAGT 59.674 43.478 0.09 0.00 42.32 3.41
708 2471 4.697352 GTGATGTACTTTGTCTGGCAAGAT 59.303 41.667 0.00 0.00 38.47 2.40
931 2695 0.831711 GATGAGGAGAGGAGGAGGCC 60.832 65.000 0.00 0.00 0.00 5.19
946 2713 2.850833 AGGAAAGGGTGATGAGGATGA 58.149 47.619 0.00 0.00 0.00 2.92
1091 2858 1.136828 AAACAGCTGGTAGGTGGTCA 58.863 50.000 19.93 0.00 43.79 4.02
1092 2859 2.152016 GAAAACAGCTGGTAGGTGGTC 58.848 52.381 19.93 0.00 43.79 4.02
1096 2863 2.711547 AGAAGGAAAACAGCTGGTAGGT 59.288 45.455 19.93 0.00 0.00 3.08
1097 2864 3.339141 GAGAAGGAAAACAGCTGGTAGG 58.661 50.000 19.93 0.00 0.00 3.18
1154 2921 4.806247 GGAGAACACGATCCAACTTCTATG 59.194 45.833 0.00 0.00 35.54 2.23
1155 2922 4.440250 CGGAGAACACGATCCAACTTCTAT 60.440 45.833 0.00 0.00 35.14 1.98
1156 2923 3.119602 CGGAGAACACGATCCAACTTCTA 60.120 47.826 0.00 0.00 35.14 2.10
1158 2925 1.993370 CGGAGAACACGATCCAACTTC 59.007 52.381 0.00 0.00 35.14 3.01
1171 2938 1.808411 TGAAGCCATGAACGGAGAAC 58.192 50.000 0.00 0.00 0.00 3.01
1198 2965 4.780324 GCGAAGAAATGCGATGTTCACTAG 60.780 45.833 0.00 0.00 0.00 2.57
1199 2966 3.062099 GCGAAGAAATGCGATGTTCACTA 59.938 43.478 0.00 0.00 0.00 2.74
1218 2985 2.069465 AAAGGTTTGTGCATGCGCGA 62.069 50.000 25.08 21.42 42.97 5.87
1234 3001 1.000274 CTTCCCGAAGCACCCAAAAAG 60.000 52.381 0.00 0.00 0.00 2.27
1313 3117 3.056393 TCGTCGATGTTACACCCTCAATT 60.056 43.478 4.21 0.00 0.00 2.32
1314 3118 2.494471 TCGTCGATGTTACACCCTCAAT 59.506 45.455 4.21 0.00 0.00 2.57
1385 3193 3.314913 CGCCACCATTGTTGCTGATATTA 59.685 43.478 0.00 0.00 31.18 0.98
1400 3208 2.350895 CTCATGTTCCCGCCACCA 59.649 61.111 0.00 0.00 0.00 4.17
1463 3271 4.473520 ACGCCGCCCATCAGGAAG 62.474 66.667 0.00 0.00 38.24 3.46
1669 3477 0.814010 ACATGCCGGCCGATCTTAAC 60.814 55.000 30.73 7.10 0.00 2.01
1713 3526 8.967552 ACGTACGTATGGTATACTACTACTAC 57.032 38.462 21.41 0.00 32.74 2.73
1716 3529 6.866770 TGGACGTACGTATGGTATACTACTAC 59.133 42.308 22.87 2.36 32.74 2.73
1727 3540 1.097232 TCTGGTGGACGTACGTATGG 58.903 55.000 22.87 8.68 0.00 2.74
1773 3591 1.608590 ACCAACGGATCAACTTTGCAG 59.391 47.619 0.00 0.00 0.00 4.41
1873 3692 3.618750 TGGTTGTCCGACCCCGTC 61.619 66.667 1.22 0.00 39.01 4.79
1875 3694 3.622826 AGTGGTTGTCCGACCCCG 61.623 66.667 1.22 0.00 39.01 5.73
1953 3777 1.104630 CGGAGAGTACCCCTTGTCTC 58.895 60.000 0.00 0.00 35.64 3.36
1961 3785 1.117150 TAATGTGCCGGAGAGTACCC 58.883 55.000 5.05 0.00 0.00 3.69
1967 3791 0.892755 AACGAGTAATGTGCCGGAGA 59.107 50.000 5.05 0.00 0.00 3.71
2002 3826 0.035630 ACTACCGAGCAGTACCGACT 60.036 55.000 0.00 0.00 35.80 4.18
2012 3836 3.251729 TCGATAATGTACCACTACCGAGC 59.748 47.826 0.00 0.00 0.00 5.03
2031 3855 1.493772 CAAGTAGTGCACCGTTTCGA 58.506 50.000 14.63 0.00 0.00 3.71
2051 3884 3.816523 GCCTACTACTCCTACTGCTACTG 59.183 52.174 0.00 0.00 0.00 2.74
2060 3893 7.069578 CCACTCTTTATTTGCCTACTACTCCTA 59.930 40.741 0.00 0.00 0.00 2.94
2062 3895 6.049790 CCACTCTTTATTTGCCTACTACTCC 58.950 44.000 0.00 0.00 0.00 3.85
2090 3941 0.961019 GCCAAACAATCAGAGGTGCA 59.039 50.000 0.00 0.00 0.00 4.57
2281 4136 9.196552 GTCAAACAAAACCTATTACGTACTACT 57.803 33.333 0.00 0.00 0.00 2.57
2322 4179 6.692486 AGAGGCGTGAATAAATATGGAGTAG 58.308 40.000 0.00 0.00 0.00 2.57
2349 4218 1.338674 CCTTCACCGTCCATAGTTGCA 60.339 52.381 0.00 0.00 0.00 4.08
2350 4219 1.369625 CCTTCACCGTCCATAGTTGC 58.630 55.000 0.00 0.00 0.00 4.17
2351 4220 1.369625 GCCTTCACCGTCCATAGTTG 58.630 55.000 0.00 0.00 0.00 3.16
2403 4274 9.541143 CCATTTCCAAGGCGTTAAATAAATAAT 57.459 29.630 0.00 0.00 0.00 1.28
2546 4417 9.659830 GTGTATGTAAACAGGAACAAGTTAAAG 57.340 33.333 0.00 0.00 0.00 1.85
2564 4437 9.465199 TGTATAAAGAGGTACACTGTGTATGTA 57.535 33.333 22.21 7.62 35.05 2.29
2663 4540 4.160252 TGGTACGATTTTGTAGGGTAGACC 59.840 45.833 0.00 0.00 40.67 3.85
2672 4549 3.940209 ACGGACTGGTACGATTTTGTA 57.060 42.857 12.54 0.00 39.85 2.41
2722 4599 9.881649 AGTTACTACTACTAAATTAAGCCAACC 57.118 33.333 0.00 0.00 31.21 3.77
2796 4674 3.120786 CCAAATTGTACGTCACCGTCTTC 60.121 47.826 0.00 0.00 46.28 2.87
2810 4688 8.788806 TCATCATTAACTAACGAACCAAATTGT 58.211 29.630 0.00 0.00 0.00 2.71
2814 4692 8.077386 GGTTTCATCATTAACTAACGAACCAAA 58.923 33.333 0.00 0.00 0.00 3.28
2972 4864 1.133976 ACTGGCCTGATGTTCCATAGC 60.134 52.381 17.64 0.00 0.00 2.97
2987 4883 3.058224 AGCTTCAAACGTCAATTACTGGC 60.058 43.478 0.00 0.00 0.00 4.85
3028 4924 4.759693 ACGTGTAGGATTTGCTCAATGAAA 59.240 37.500 0.00 0.00 0.00 2.69
3144 5054 1.519751 TTGGATTGAACAACGGCGGG 61.520 55.000 13.24 5.43 0.00 6.13
3158 5068 5.819991 TCCTCTATGCAAGTTTCTTTGGAT 58.180 37.500 0.00 0.00 41.25 3.41
3185 5095 3.323691 ACTTATTGAAACCAAACAGGCCC 59.676 43.478 0.00 0.00 43.14 5.80
3186 5096 4.038642 TGACTTATTGAAACCAAACAGGCC 59.961 41.667 0.00 0.00 43.14 5.19
3187 5097 4.982295 GTGACTTATTGAAACCAAACAGGC 59.018 41.667 0.00 0.00 43.14 4.85
3189 5099 6.039270 TCAGGTGACTTATTGAAACCAAACAG 59.961 38.462 0.00 0.00 40.21 3.16
3190 5100 5.888724 TCAGGTGACTTATTGAAACCAAACA 59.111 36.000 0.00 0.00 40.21 2.83
3191 5101 6.206498 GTCAGGTGACTTATTGAAACCAAAC 58.794 40.000 2.72 0.00 41.65 2.93
3214 5124 4.838986 AGGTGTGTCAGGTGACTTATAAGT 59.161 41.667 18.05 18.05 44.99 2.24
3220 5130 2.103263 GAGAAGGTGTGTCAGGTGACTT 59.897 50.000 11.31 0.00 44.99 3.01
3221 5131 1.689273 GAGAAGGTGTGTCAGGTGACT 59.311 52.381 11.31 0.00 44.99 3.41
3222 5132 1.412710 TGAGAAGGTGTGTCAGGTGAC 59.587 52.381 2.99 2.99 44.97 3.67
3223 5133 1.412710 GTGAGAAGGTGTGTCAGGTGA 59.587 52.381 0.00 0.00 28.26 4.02
3224 5134 1.138859 TGTGAGAAGGTGTGTCAGGTG 59.861 52.381 0.00 0.00 28.26 4.00
3226 5136 2.037641 TGATGTGAGAAGGTGTGTCAGG 59.962 50.000 0.00 0.00 28.26 3.86
3227 5137 3.391506 TGATGTGAGAAGGTGTGTCAG 57.608 47.619 0.00 0.00 28.26 3.51
3229 5139 4.318332 TGATTGATGTGAGAAGGTGTGTC 58.682 43.478 0.00 0.00 0.00 3.67
3230 5140 4.356405 TGATTGATGTGAGAAGGTGTGT 57.644 40.909 0.00 0.00 0.00 3.72
3231 5141 4.516321 TGTTGATTGATGTGAGAAGGTGTG 59.484 41.667 0.00 0.00 0.00 3.82
3232 5142 4.717877 TGTTGATTGATGTGAGAAGGTGT 58.282 39.130 0.00 0.00 0.00 4.16
3233 5143 5.413523 TGATGTTGATTGATGTGAGAAGGTG 59.586 40.000 0.00 0.00 0.00 4.00
3234 5144 5.563592 TGATGTTGATTGATGTGAGAAGGT 58.436 37.500 0.00 0.00 0.00 3.50
3235 5145 6.495706 CATGATGTTGATTGATGTGAGAAGG 58.504 40.000 0.00 0.00 0.00 3.46
3236 5146 5.971792 GCATGATGTTGATTGATGTGAGAAG 59.028 40.000 0.00 0.00 0.00 2.85
3240 5150 4.097286 CCTGCATGATGTTGATTGATGTGA 59.903 41.667 0.00 0.00 0.00 3.58
3241 5151 4.142249 ACCTGCATGATGTTGATTGATGTG 60.142 41.667 0.00 0.00 0.00 3.21
3242 5152 4.021229 ACCTGCATGATGTTGATTGATGT 58.979 39.130 0.00 0.00 0.00 3.06
3243 5153 4.359706 CACCTGCATGATGTTGATTGATG 58.640 43.478 0.00 0.00 0.00 3.07
3244 5154 3.383505 CCACCTGCATGATGTTGATTGAT 59.616 43.478 0.00 0.00 0.00 2.57
3245 5155 2.756207 CCACCTGCATGATGTTGATTGA 59.244 45.455 0.00 0.00 0.00 2.57
3246 5156 2.494471 ACCACCTGCATGATGTTGATTG 59.506 45.455 0.00 0.00 0.00 2.67
3249 5159 1.536940 CACCACCTGCATGATGTTGA 58.463 50.000 0.00 0.00 0.00 3.18
3250 5160 0.528924 CCACCACCTGCATGATGTTG 59.471 55.000 0.00 0.00 0.00 3.33
3251 5161 0.612732 CCCACCACCTGCATGATGTT 60.613 55.000 0.00 0.00 0.00 2.71
3252 5162 1.000521 CCCACCACCTGCATGATGT 60.001 57.895 0.00 0.00 0.00 3.06
3255 5165 2.756400 GTCCCACCACCTGCATGA 59.244 61.111 0.00 0.00 0.00 3.07
3256 5166 2.361610 GGTCCCACCACCTGCATG 60.362 66.667 0.00 0.00 38.42 4.06
3257 5167 3.661648 GGGTCCCACCACCTGCAT 61.662 66.667 1.78 0.00 41.02 3.96
3260 5170 1.204786 TACATGGGTCCCACCACCTG 61.205 60.000 14.57 10.01 44.72 4.00
3261 5171 0.476808 TTACATGGGTCCCACCACCT 60.477 55.000 14.57 0.00 44.72 4.00
3262 5172 0.406361 TTTACATGGGTCCCACCACC 59.594 55.000 14.57 0.00 44.72 4.61
3265 5175 1.618616 CCCTTTTACATGGGTCCCACC 60.619 57.143 14.57 0.00 35.80 4.61
3266 5176 1.618616 CCCCTTTTACATGGGTCCCAC 60.619 57.143 14.57 0.00 41.82 4.61
3267 5177 0.707616 CCCCTTTTACATGGGTCCCA 59.292 55.000 14.64 14.64 41.82 4.37
3268 5178 0.032515 CCCCCTTTTACATGGGTCCC 60.033 60.000 0.00 0.00 41.82 4.46
3269 5179 3.607871 CCCCCTTTTACATGGGTCC 57.392 57.895 0.00 0.00 41.82 4.46
3272 5182 1.357761 AGTCACCCCCTTTTACATGGG 59.642 52.381 0.00 0.00 44.03 4.00
3273 5183 2.899303 AGTCACCCCCTTTTACATGG 57.101 50.000 0.00 0.00 0.00 3.66
3279 5189 9.085645 CTTAAAACTTATAAGTCACCCCCTTTT 57.914 33.333 18.28 13.78 38.57 2.27
3280 5190 8.229605 ACTTAAAACTTATAAGTCACCCCCTTT 58.770 33.333 18.28 14.40 38.85 3.11
3283 5193 7.094075 CCAACTTAAAACTTATAAGTCACCCCC 60.094 40.741 18.28 0.00 41.49 5.40
3284 5194 7.094075 CCCAACTTAAAACTTATAAGTCACCCC 60.094 40.741 18.28 0.00 41.49 4.95
3285 5195 7.094075 CCCCAACTTAAAACTTATAAGTCACCC 60.094 40.741 18.28 0.00 41.49 4.61
3286 5196 7.449395 ACCCCAACTTAAAACTTATAAGTCACC 59.551 37.037 18.28 0.00 41.49 4.02
3287 5197 8.294577 CACCCCAACTTAAAACTTATAAGTCAC 58.705 37.037 18.28 0.00 41.49 3.67
3288 5198 7.449086 CCACCCCAACTTAAAACTTATAAGTCA 59.551 37.037 18.28 4.72 41.49 3.41
3289 5199 7.666804 TCCACCCCAACTTAAAACTTATAAGTC 59.333 37.037 18.28 0.00 41.49 3.01
3290 5200 7.528675 TCCACCCCAACTTAAAACTTATAAGT 58.471 34.615 12.50 12.50 43.57 2.24
3291 5201 8.301720 GTTCCACCCCAACTTAAAACTTATAAG 58.698 37.037 11.05 11.05 36.62 1.73
3293 5203 7.296098 TGTTCCACCCCAACTTAAAACTTATA 58.704 34.615 0.00 0.00 0.00 0.98
3294 5204 6.137559 TGTTCCACCCCAACTTAAAACTTAT 58.862 36.000 0.00 0.00 0.00 1.73
3295 5205 5.516984 TGTTCCACCCCAACTTAAAACTTA 58.483 37.500 0.00 0.00 0.00 2.24
3296 5206 4.354662 TGTTCCACCCCAACTTAAAACTT 58.645 39.130 0.00 0.00 0.00 2.66
3297 5207 3.983821 TGTTCCACCCCAACTTAAAACT 58.016 40.909 0.00 0.00 0.00 2.66
3298 5208 4.160814 AGTTGTTCCACCCCAACTTAAAAC 59.839 41.667 0.00 0.00 46.82 2.43
3299 5209 4.354662 AGTTGTTCCACCCCAACTTAAAA 58.645 39.130 0.00 0.00 46.82 1.52
3300 5210 3.983821 AGTTGTTCCACCCCAACTTAAA 58.016 40.909 0.00 0.00 46.82 1.52
3305 5215 3.254903 GTCATAAGTTGTTCCACCCCAAC 59.745 47.826 0.00 0.00 40.94 3.77
3306 5216 3.139397 AGTCATAAGTTGTTCCACCCCAA 59.861 43.478 0.00 0.00 0.00 4.12
3308 5218 3.434940 AGTCATAAGTTGTTCCACCCC 57.565 47.619 0.00 0.00 0.00 4.95
3309 5219 8.209917 CTTATAAGTCATAAGTTGTTCCACCC 57.790 38.462 4.18 0.00 40.84 4.61
3334 5244 5.439721 ACCCGAATTATAAGTTACCCCAAC 58.560 41.667 0.00 0.00 37.41 3.77
3335 5245 5.429435 AGACCCGAATTATAAGTTACCCCAA 59.571 40.000 0.00 0.00 0.00 4.12
3338 5248 5.922053 ACAGACCCGAATTATAAGTTACCC 58.078 41.667 0.00 0.00 0.00 3.69
3339 5249 7.201670 CCAAACAGACCCGAATTATAAGTTACC 60.202 40.741 0.00 0.00 0.00 2.85
3340 5250 7.677982 GCCAAACAGACCCGAATTATAAGTTAC 60.678 40.741 0.00 0.00 0.00 2.50
3341 5251 6.316890 GCCAAACAGACCCGAATTATAAGTTA 59.683 38.462 0.00 0.00 0.00 2.24
3342 5252 5.124936 GCCAAACAGACCCGAATTATAAGTT 59.875 40.000 0.00 0.00 0.00 2.66
3344 5254 4.638421 TGCCAAACAGACCCGAATTATAAG 59.362 41.667 0.00 0.00 0.00 1.73
3347 5257 3.080300 TGCCAAACAGACCCGAATTAT 57.920 42.857 0.00 0.00 0.00 1.28
3348 5258 2.570415 TGCCAAACAGACCCGAATTA 57.430 45.000 0.00 0.00 0.00 1.40
3349 5259 1.698506 TTGCCAAACAGACCCGAATT 58.301 45.000 0.00 0.00 0.00 2.17
3350 5260 1.698506 TTTGCCAAACAGACCCGAAT 58.301 45.000 0.00 0.00 0.00 3.34
3351 5261 1.475403 TTTTGCCAAACAGACCCGAA 58.525 45.000 0.00 0.00 0.00 4.30
3352 5262 1.698506 ATTTTGCCAAACAGACCCGA 58.301 45.000 0.00 0.00 0.00 5.14
3353 5263 3.005367 ACTTATTTTGCCAAACAGACCCG 59.995 43.478 0.00 0.00 0.00 5.28
3355 5265 5.195001 TGACTTATTTTGCCAAACAGACC 57.805 39.130 0.00 0.00 0.00 3.85
3356 5266 7.653311 AGAAATGACTTATTTTGCCAAACAGAC 59.347 33.333 0.00 0.00 39.06 3.51
3358 5268 7.951530 AGAAATGACTTATTTTGCCAAACAG 57.048 32.000 0.00 0.00 39.06 3.16
3359 5269 8.729805 AAAGAAATGACTTATTTTGCCAAACA 57.270 26.923 0.00 0.00 39.06 2.83
3386 5296 9.841295 AGTCACCAACTTATAAGTCAAAAAGTA 57.159 29.630 18.28 0.00 38.57 2.24
3403 5313 8.705048 TGTTTGGTTTTAAATAAGTCACCAAC 57.295 30.769 16.03 12.59 42.59 3.77
3404 5314 7.982354 CCTGTTTGGTTTTAAATAAGTCACCAA 59.018 33.333 13.46 13.46 41.48 3.67
3405 5315 7.493367 CCTGTTTGGTTTTAAATAAGTCACCA 58.507 34.615 3.55 3.55 32.35 4.17
3407 5317 6.422701 GGCCTGTTTGGTTTTAAATAAGTCAC 59.577 38.462 0.00 0.00 38.35 3.67
3408 5318 6.463190 GGGCCTGTTTGGTTTTAAATAAGTCA 60.463 38.462 0.84 0.00 38.35 3.41
3409 5319 5.929992 GGGCCTGTTTGGTTTTAAATAAGTC 59.070 40.000 0.84 0.00 38.35 3.01
3411 5321 6.109156 AGGGCCTGTTTGGTTTTAAATAAG 57.891 37.500 4.50 0.00 38.35 1.73
3413 5323 6.783482 ACTAAGGGCCTGTTTGGTTTTAAATA 59.217 34.615 6.92 0.00 38.35 1.40
3417 5327 4.187506 ACTAAGGGCCTGTTTGGTTTTA 57.812 40.909 6.92 0.00 38.35 1.52
3418 5328 3.040655 ACTAAGGGCCTGTTTGGTTTT 57.959 42.857 6.92 0.00 38.35 2.43
3419 5329 2.767644 ACTAAGGGCCTGTTTGGTTT 57.232 45.000 6.92 0.00 38.35 3.27
3420 5330 2.767644 AACTAAGGGCCTGTTTGGTT 57.232 45.000 6.92 2.69 38.35 3.67
3421 5331 2.177016 AGAAACTAAGGGCCTGTTTGGT 59.823 45.455 22.49 6.80 38.35 3.67
3423 5333 4.332819 CGATAGAAACTAAGGGCCTGTTTG 59.667 45.833 22.49 9.63 34.55 2.93
3424 5334 4.019591 ACGATAGAAACTAAGGGCCTGTTT 60.020 41.667 18.82 18.82 41.38 2.83
3425 5335 3.518303 ACGATAGAAACTAAGGGCCTGTT 59.482 43.478 6.92 4.85 41.38 3.16
3426 5336 3.105283 ACGATAGAAACTAAGGGCCTGT 58.895 45.455 6.92 0.00 41.38 4.00
3427 5337 3.821421 ACGATAGAAACTAAGGGCCTG 57.179 47.619 6.92 0.00 41.38 4.85
3428 5338 5.365895 ACATTACGATAGAAACTAAGGGCCT 59.634 40.000 0.00 0.00 41.38 5.19
3429 5339 5.608449 ACATTACGATAGAAACTAAGGGCC 58.392 41.667 0.00 0.00 41.38 5.80
3430 5340 7.381678 CACTACATTACGATAGAAACTAAGGGC 59.618 40.741 0.00 0.00 41.38 5.19
3431 5341 8.627403 TCACTACATTACGATAGAAACTAAGGG 58.373 37.037 0.00 0.00 41.38 3.95
3470 5453 7.439356 TGCAAGACAAGCATATTATCACTAGTC 59.561 37.037 0.00 0.00 37.02 2.59
3492 5478 4.350245 AGGTACATACTGGAGTAGTGCAA 58.650 43.478 0.00 0.00 40.65 4.08
3493 5479 3.977312 AGGTACATACTGGAGTAGTGCA 58.023 45.455 0.00 0.00 40.65 4.57
3799 5785 0.400213 CCAGGGTCAAGTTGTAGCCA 59.600 55.000 19.13 0.00 35.67 4.75
3868 5854 2.030185 CAGGATAAGATGGACCGTACCG 60.030 54.545 0.00 0.00 0.00 4.02
3869 5855 2.299297 CCAGGATAAGATGGACCGTACC 59.701 54.545 0.00 0.00 39.02 3.34
3870 5856 2.288886 GCCAGGATAAGATGGACCGTAC 60.289 54.545 0.00 0.00 39.02 3.67
3914 5900 2.131183 GCATTGTCATCTCGTCCTAGC 58.869 52.381 0.00 0.00 0.00 3.42
3918 5904 2.593346 AGAGCATTGTCATCTCGTCC 57.407 50.000 0.00 0.00 32.42 4.79
3920 5906 2.234661 TCCAAGAGCATTGTCATCTCGT 59.765 45.455 1.60 0.00 32.42 4.18
4003 5989 0.536724 TGCATAGCATCTCACCGTGT 59.463 50.000 0.00 0.00 31.71 4.49
4024 6010 1.157870 ACGGAACAGAACGCAACCAG 61.158 55.000 0.00 0.00 0.00 4.00
4032 6018 3.252701 TGACAGAGTAGACGGAACAGAAC 59.747 47.826 0.00 0.00 0.00 3.01
4044 6030 8.678199 TCAGTTGTATACAAGATGACAGAGTAG 58.322 37.037 18.56 0.00 36.39 2.57
4124 6113 2.616960 TGGAACATTGAACCTCGATCG 58.383 47.619 9.36 9.36 0.00 3.69
4150 6139 4.946784 AATAACACAAGTTGCTCGATCC 57.053 40.909 1.81 0.00 38.69 3.36
4191 6186 6.465084 ACCAGTACCACTAGCTAAAGAAAAG 58.535 40.000 0.00 0.00 0.00 2.27
4238 6233 5.570589 GTCCTGTACACGTACATAGTTCAAC 59.429 44.000 10.31 0.00 44.15 3.18
4247 6242 3.189910 CAGCTTAGTCCTGTACACGTACA 59.810 47.826 9.55 9.55 43.14 2.90
4530 6525 5.777850 ACATAACAAAACCCTAAAACGCT 57.222 34.783 0.00 0.00 0.00 5.07
4640 6639 3.874383 TCCATGTTGTTTCCTCCTTCA 57.126 42.857 0.00 0.00 0.00 3.02
4641 6640 5.509670 CCTTTTCCATGTTGTTTCCTCCTTC 60.510 44.000 0.00 0.00 0.00 3.46
4642 6641 4.344968 CCTTTTCCATGTTGTTTCCTCCTT 59.655 41.667 0.00 0.00 0.00 3.36
4652 6651 2.095263 CCACTACGCCTTTTCCATGTTG 60.095 50.000 0.00 0.00 0.00 3.33
4696 6695 1.697394 CCCCCATGGTCCATGAGGA 60.697 63.158 29.33 0.00 41.39 3.71
4699 6698 2.013964 ATGCCCCCATGGTCCATGA 61.014 57.895 30.14 12.50 43.81 3.07
4727 6726 2.810439 TTTTCTTTTGTCCATGGCGG 57.190 45.000 6.96 0.00 0.00 6.13
4728 6727 3.679502 GGATTTTTCTTTTGTCCATGGCG 59.320 43.478 6.96 0.00 0.00 5.69
4742 6741 7.662604 ATGAGCAAATGAAACTGGATTTTTC 57.337 32.000 0.00 0.00 34.16 2.29
4750 6749 5.535333 AGACCAAATGAGCAAATGAAACTG 58.465 37.500 0.00 0.00 0.00 3.16
4778 6777 1.466167 GAGAACGCGCGACCCTATATA 59.534 52.381 39.36 0.00 0.00 0.86
4779 6778 0.240411 GAGAACGCGCGACCCTATAT 59.760 55.000 39.36 8.45 0.00 0.86
4780 6779 0.816825 AGAGAACGCGCGACCCTATA 60.817 55.000 39.36 0.00 0.00 1.31
4781 6780 1.664321 AAGAGAACGCGCGACCCTAT 61.664 55.000 39.36 22.56 0.00 2.57
4807 6809 7.775120 AGTGAAGACAAACATGACATTTTTCT 58.225 30.769 0.00 0.00 29.41 2.52
4870 6872 7.122055 GGTCCAAATCAATGTACCTGTAATTGA 59.878 37.037 7.72 7.72 42.70 2.57
4940 6943 8.472007 AAGGGTGTTTTCAACATATTTCACTA 57.528 30.769 0.00 0.00 44.35 2.74
4942 6945 7.433680 AGAAGGGTGTTTTCAACATATTTCAC 58.566 34.615 0.00 0.00 44.35 3.18
4949 6952 3.243401 GCGAAGAAGGGTGTTTTCAACAT 60.243 43.478 0.00 0.00 44.35 2.71
4951 6954 2.727777 GCGAAGAAGGGTGTTTTCAAC 58.272 47.619 0.00 0.00 36.67 3.18
4961 6964 2.135933 GATTGATACCGCGAAGAAGGG 58.864 52.381 8.23 0.00 0.00 3.95
4988 6991 7.145932 ACCGAAGTCTTTGGAATATTTCTTG 57.854 36.000 23.64 0.00 37.65 3.02
4997 7001 5.070047 AGACTCTTTACCGAAGTCTTTGGAA 59.930 40.000 23.64 11.48 36.57 3.53
5011 7015 6.305693 ACAGTTCAATTGCAGACTCTTTAC 57.694 37.500 0.00 0.00 0.00 2.01
5019 7023 3.058983 CGTTGCTACAGTTCAATTGCAGA 60.059 43.478 0.00 0.00 0.00 4.26
5029 7033 1.937899 GACAACACCGTTGCTACAGTT 59.062 47.619 6.77 0.00 0.00 3.16
5034 7038 1.411246 AGAGTGACAACACCGTTGCTA 59.589 47.619 6.77 0.00 46.99 3.49
5096 7100 0.179004 TTTGGATGGGCGACACAAGT 60.179 50.000 0.00 0.00 0.00 3.16
5101 7105 1.818060 CATCTTTTTGGATGGGCGACA 59.182 47.619 0.00 0.00 39.33 4.35
5168 7172 0.598065 GATTCAACGGCCTGCACTTT 59.402 50.000 0.00 0.00 0.00 2.66
5204 7208 4.543590 AGTGAAATCTTCCATCGACACT 57.456 40.909 0.00 0.00 33.47 3.55
5214 7218 8.014517 GTGATTCTCTGTGAAAGTGAAATCTTC 58.985 37.037 0.00 0.00 40.71 2.87
5225 7229 7.815840 TTTATTGGTGTGATTCTCTGTGAAA 57.184 32.000 0.00 0.00 38.29 2.69
5279 7284 6.267496 TGCAGATCCGATTATTCGAATCTA 57.733 37.500 15.25 4.57 46.23 1.98
5333 7338 8.567948 ATCAAAAGTGAAGACAAATATGTCGTT 58.432 29.630 3.54 0.00 46.27 3.85
5335 7340 7.693951 GGATCAAAAGTGAAGACAAATATGTCG 59.306 37.037 3.54 0.00 46.91 4.35
5336 7341 7.970614 GGGATCAAAAGTGAAGACAAATATGTC 59.029 37.037 0.76 0.76 44.89 3.06
5337 7342 7.671398 AGGGATCAAAAGTGAAGACAAATATGT 59.329 33.333 0.00 0.00 38.99 2.29
5338 7343 8.059798 AGGGATCAAAAGTGAAGACAAATATG 57.940 34.615 0.00 0.00 37.30 1.78
5339 7344 8.526147 CAAGGGATCAAAAGTGAAGACAAATAT 58.474 33.333 0.00 0.00 37.30 1.28
5340 7345 7.505585 ACAAGGGATCAAAAGTGAAGACAAATA 59.494 33.333 0.00 0.00 37.30 1.40
5341 7346 6.324770 ACAAGGGATCAAAAGTGAAGACAAAT 59.675 34.615 0.00 0.00 37.30 2.32
5342 7347 5.656416 ACAAGGGATCAAAAGTGAAGACAAA 59.344 36.000 0.00 0.00 37.30 2.83
5343 7348 5.200483 ACAAGGGATCAAAAGTGAAGACAA 58.800 37.500 0.00 0.00 37.30 3.18
5344 7349 4.792068 ACAAGGGATCAAAAGTGAAGACA 58.208 39.130 0.00 0.00 37.30 3.41
5345 7350 5.278512 GGAACAAGGGATCAAAAGTGAAGAC 60.279 44.000 0.00 0.00 37.30 3.01
5346 7351 4.827284 GGAACAAGGGATCAAAAGTGAAGA 59.173 41.667 0.00 0.00 37.30 2.87
5347 7352 4.584325 TGGAACAAGGGATCAAAAGTGAAG 59.416 41.667 0.00 0.00 33.38 3.02
5348 7353 4.541705 TGGAACAAGGGATCAAAAGTGAA 58.458 39.130 0.00 0.00 33.38 3.18
5349 7354 4.177537 TGGAACAAGGGATCAAAAGTGA 57.822 40.909 0.00 0.00 34.10 3.41
5365 7370 4.389576 CTGTGCGCCGCTTGGAAC 62.390 66.667 11.67 0.00 33.02 3.62
5377 7382 4.035102 GTCCCCTGGACCCTGTGC 62.035 72.222 1.68 0.00 46.19 4.57
5405 7410 3.240606 CTTCGCGTTGCACCTGGTG 62.241 63.158 22.46 22.46 36.51 4.17
5406 7411 2.972505 CTTCGCGTTGCACCTGGT 60.973 61.111 5.77 0.00 0.00 4.00
5407 7412 4.389576 GCTTCGCGTTGCACCTGG 62.390 66.667 17.86 0.00 0.00 4.45
5435 7440 9.562408 TCTTGGTATATTTGTGTCACAAGTTTA 57.438 29.630 17.63 11.91 39.53 2.01
5436 7441 8.458573 TCTTGGTATATTTGTGTCACAAGTTT 57.541 30.769 17.63 12.81 39.53 2.66
5437 7442 8.458573 TTCTTGGTATATTTGTGTCACAAGTT 57.541 30.769 17.63 12.31 39.53 2.66
5438 7443 8.458573 TTTCTTGGTATATTTGTGTCACAAGT 57.541 30.769 17.49 17.11 39.53 3.16
5439 7444 9.743057 TTTTTCTTGGTATATTTGTGTCACAAG 57.257 29.630 17.49 4.11 39.53 3.16
5440 7445 9.743057 CTTTTTCTTGGTATATTTGTGTCACAA 57.257 29.630 14.48 14.48 36.11 3.33
5441 7446 9.126151 TCTTTTTCTTGGTATATTTGTGTCACA 57.874 29.630 0.18 0.18 0.00 3.58
5442 7447 9.612620 CTCTTTTTCTTGGTATATTTGTGTCAC 57.387 33.333 0.00 0.00 0.00 3.67
5443 7448 9.349713 ACTCTTTTTCTTGGTATATTTGTGTCA 57.650 29.630 0.00 0.00 0.00 3.58
5468 7473 3.624861 CAGAAGCACCATCACAAGGATAC 59.375 47.826 0.00 0.00 33.95 2.24
5469 7474 3.264193 ACAGAAGCACCATCACAAGGATA 59.736 43.478 0.00 0.00 33.95 2.59
5470 7475 2.040813 ACAGAAGCACCATCACAAGGAT 59.959 45.455 0.00 0.00 36.39 3.24
5471 7476 1.421268 ACAGAAGCACCATCACAAGGA 59.579 47.619 0.00 0.00 0.00 3.36
5472 7477 1.808945 GACAGAAGCACCATCACAAGG 59.191 52.381 0.00 0.00 0.00 3.61
5473 7478 2.775890 AGACAGAAGCACCATCACAAG 58.224 47.619 0.00 0.00 0.00 3.16
5474 7479 2.936919 AGACAGAAGCACCATCACAA 57.063 45.000 0.00 0.00 0.00 3.33
5475 7480 2.104622 TGAAGACAGAAGCACCATCACA 59.895 45.455 0.00 0.00 0.00 3.58
5476 7481 2.481952 GTGAAGACAGAAGCACCATCAC 59.518 50.000 0.00 0.00 0.00 3.06
5477 7482 2.369860 AGTGAAGACAGAAGCACCATCA 59.630 45.455 0.00 0.00 31.85 3.07
5478 7483 3.051081 AGTGAAGACAGAAGCACCATC 57.949 47.619 0.00 0.00 31.85 3.51
5479 7484 3.498774 AAGTGAAGACAGAAGCACCAT 57.501 42.857 0.00 0.00 31.85 3.55
5480 7485 3.281727 AAAGTGAAGACAGAAGCACCA 57.718 42.857 0.00 0.00 31.85 4.17
5481 7486 3.627577 TCAAAAGTGAAGACAGAAGCACC 59.372 43.478 0.00 0.00 31.85 5.01
5482 7487 4.592179 GTCAAAAGTGAAGACAGAAGCAC 58.408 43.478 0.00 0.00 34.87 4.40
5483 7488 3.309682 CGTCAAAAGTGAAGACAGAAGCA 59.690 43.478 0.00 0.00 35.47 3.91
5484 7489 3.555956 TCGTCAAAAGTGAAGACAGAAGC 59.444 43.478 0.00 0.00 37.35 3.86
5491 7496 2.218953 AGCGTCGTCAAAAGTGAAGA 57.781 45.000 0.00 0.00 39.56 2.87
5492 7497 2.348591 GGAAGCGTCGTCAAAAGTGAAG 60.349 50.000 0.00 0.00 34.87 3.02
5493 7498 1.595794 GGAAGCGTCGTCAAAAGTGAA 59.404 47.619 0.00 0.00 34.87 3.18
5494 7499 1.202486 AGGAAGCGTCGTCAAAAGTGA 60.202 47.619 0.00 0.00 0.00 3.41
5495 7500 1.217882 AGGAAGCGTCGTCAAAAGTG 58.782 50.000 0.00 0.00 0.00 3.16
5496 7501 2.806608 TAGGAAGCGTCGTCAAAAGT 57.193 45.000 0.00 0.00 0.00 2.66
5497 7502 4.151689 TCAAATAGGAAGCGTCGTCAAAAG 59.848 41.667 0.00 0.00 0.00 2.27
5498 7503 4.059511 TCAAATAGGAAGCGTCGTCAAAA 58.940 39.130 0.00 0.00 0.00 2.44
5499 7504 3.430895 GTCAAATAGGAAGCGTCGTCAAA 59.569 43.478 0.00 0.00 0.00 2.69
5500 7505 2.991190 GTCAAATAGGAAGCGTCGTCAA 59.009 45.455 0.00 0.00 0.00 3.18
5501 7506 2.602878 GTCAAATAGGAAGCGTCGTCA 58.397 47.619 0.00 0.00 0.00 4.35
5502 7507 1.582502 CGTCAAATAGGAAGCGTCGTC 59.417 52.381 0.00 0.00 0.00 4.20
5503 7508 1.625616 CGTCAAATAGGAAGCGTCGT 58.374 50.000 0.00 0.00 0.00 4.34
5504 7509 0.297820 GCGTCAAATAGGAAGCGTCG 59.702 55.000 0.00 0.00 32.90 5.12
5505 7510 1.641577 AGCGTCAAATAGGAAGCGTC 58.358 50.000 0.00 0.00 45.21 5.19
5506 7511 2.000447 GAAGCGTCAAATAGGAAGCGT 59.000 47.619 0.00 0.00 45.21 5.07
5507 7512 1.999735 TGAAGCGTCAAATAGGAAGCG 59.000 47.619 0.00 0.00 45.21 4.68
5508 7513 3.062774 GTCTGAAGCGTCAAATAGGAAGC 59.937 47.826 3.39 0.00 41.69 3.86
5509 7514 4.092091 GTGTCTGAAGCGTCAAATAGGAAG 59.908 45.833 3.39 0.00 31.88 3.46
5510 7515 3.994392 GTGTCTGAAGCGTCAAATAGGAA 59.006 43.478 3.39 0.00 31.88 3.36
5511 7516 3.585862 GTGTCTGAAGCGTCAAATAGGA 58.414 45.455 3.39 0.00 31.88 2.94
5512 7517 2.673368 GGTGTCTGAAGCGTCAAATAGG 59.327 50.000 3.39 0.00 31.88 2.57
5513 7518 3.369147 CAGGTGTCTGAAGCGTCAAATAG 59.631 47.826 3.39 0.00 43.49 1.73
5514 7519 3.244078 ACAGGTGTCTGAAGCGTCAAATA 60.244 43.478 3.39 0.00 43.49 1.40
5515 7520 2.146342 CAGGTGTCTGAAGCGTCAAAT 58.854 47.619 3.39 0.00 43.49 2.32
5516 7521 1.134521 ACAGGTGTCTGAAGCGTCAAA 60.135 47.619 3.39 0.00 43.49 2.69
5517 7522 0.464036 ACAGGTGTCTGAAGCGTCAA 59.536 50.000 3.39 0.00 43.49 3.18
5518 7523 0.464036 AACAGGTGTCTGAAGCGTCA 59.536 50.000 1.47 1.47 43.49 4.35
5519 7524 2.059541 GTAACAGGTGTCTGAAGCGTC 58.940 52.381 0.00 0.00 43.49 5.19
5520 7525 2.150397 GTAACAGGTGTCTGAAGCGT 57.850 50.000 0.00 0.00 43.49 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.