Multiple sequence alignment - TraesCS3B01G260500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G260500 chr3B 100.000 2891 0 0 1 2891 418441175 418438285 0.000000e+00 5339.0
1 TraesCS3B01G260500 chr3B 88.584 438 34 10 1 427 704250275 704249843 4.270000e-143 518.0
2 TraesCS3B01G260500 chr3B 91.781 365 26 2 3 366 723473175 723472814 3.320000e-139 505.0
3 TraesCS3B01G260500 chr3B 90.659 364 29 3 1 363 414169164 414169523 2.020000e-131 479.0
4 TraesCS3B01G260500 chr3B 82.984 382 54 5 853 1233 386379902 386379531 4.620000e-88 335.0
5 TraesCS3B01G260500 chr3D 92.314 2446 127 32 474 2891 302946721 302949133 0.000000e+00 3419.0
6 TraesCS3B01G260500 chr3A 92.789 2205 115 23 723 2891 431741498 431739302 0.000000e+00 3151.0
7 TraesCS3B01G260500 chr3A 88.140 430 35 8 1 427 749477980 749478396 5.560000e-137 497.0
8 TraesCS3B01G260500 chr3A 82.927 246 30 6 864 1107 385528185 385527950 8.120000e-51 211.0
9 TraesCS3B01G260500 chr3A 100.000 31 0 0 478 508 431741659 431741629 1.120000e-04 58.4
10 TraesCS3B01G260500 chr1B 78.530 871 127 29 1053 1893 666079727 666078887 4.270000e-143 518.0
11 TraesCS3B01G260500 chr1B 79.909 219 35 8 2356 2568 534219285 534219500 4.990000e-33 152.0
12 TraesCS3B01G260500 chr4B 88.356 438 36 4 1 427 484831348 484830915 1.990000e-141 512.0
13 TraesCS3B01G260500 chr4B 88.330 437 33 6 1 426 544044446 544044017 2.570000e-140 508.0
14 TraesCS3B01G260500 chr4B 80.328 244 44 3 2339 2578 524101348 524101105 6.360000e-42 182.0
15 TraesCS3B01G260500 chr1D 78.335 877 127 30 1053 1893 478292745 478291896 2.570000e-140 508.0
16 TraesCS3B01G260500 chr1D 83.085 201 32 1 2370 2568 398920350 398920550 6.360000e-42 182.0
17 TraesCS3B01G260500 chr1D 77.193 228 42 8 2035 2257 224371580 224371358 1.090000e-24 124.0
18 TraesCS3B01G260500 chr5B 87.900 438 38 4 1 427 77845019 77844586 4.300000e-138 501.0
19 TraesCS3B01G260500 chr5B 81.675 191 31 2 2036 2222 297105750 297105560 3.860000e-34 156.0
20 TraesCS3B01G260500 chr7D 91.553 367 20 6 1 366 495156897 495156541 2.000000e-136 496.0
21 TraesCS3B01G260500 chr1A 81.789 626 80 13 1279 1893 574499464 574498862 7.200000e-136 494.0
22 TraesCS3B01G260500 chr1A 84.651 215 33 0 2035 2249 321187420 321187634 6.270000e-52 215.0
23 TraesCS3B01G260500 chr1A 81.019 216 36 3 2356 2568 495644348 495644561 1.780000e-37 167.0
24 TraesCS3B01G260500 chr6D 87.879 429 36 7 1 427 50739648 50740062 9.310000e-135 490.0
25 TraesCS3B01G260500 chr6B 81.614 223 30 9 2036 2257 695004007 695004219 1.060000e-39 174.0
26 TraesCS3B01G260500 chr6B 80.676 207 31 6 2019 2222 161437746 161437946 4.990000e-33 152.0
27 TraesCS3B01G260500 chr7B 83.243 185 29 1 2372 2554 378674562 378674746 4.950000e-38 169.0
28 TraesCS3B01G260500 chr2A 80.455 220 36 7 2353 2566 5786250 5786468 8.290000e-36 161.0
29 TraesCS3B01G260500 chr6A 85.000 160 20 3 2056 2211 616879553 616879394 2.980000e-35 159.0
30 TraesCS3B01G260500 chr2B 80.488 205 32 7 2036 2239 53418171 53418368 1.790000e-32 150.0
31 TraesCS3B01G260500 chr2D 79.439 214 39 4 2372 2582 309083619 309083830 2.320000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G260500 chr3B 418438285 418441175 2890 True 5339.0 5339 100.0000 1 2891 1 chr3B.!!$R2 2890
1 TraesCS3B01G260500 chr3D 302946721 302949133 2412 False 3419.0 3419 92.3140 474 2891 1 chr3D.!!$F1 2417
2 TraesCS3B01G260500 chr3A 431739302 431741659 2357 True 1604.7 3151 96.3945 478 2891 2 chr3A.!!$R2 2413
3 TraesCS3B01G260500 chr1B 666078887 666079727 840 True 518.0 518 78.5300 1053 1893 1 chr1B.!!$R1 840
4 TraesCS3B01G260500 chr1D 478291896 478292745 849 True 508.0 508 78.3350 1053 1893 1 chr1D.!!$R2 840
5 TraesCS3B01G260500 chr1A 574498862 574499464 602 True 494.0 494 81.7890 1279 1893 1 chr1A.!!$R1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
415 416 0.105504 ATATTTGGGCCAGCCTTCCC 60.106 55.0 6.23 0.0 42.93 3.97 F
435 436 0.106149 GTTGGACGGTCCTGTTGACT 59.894 55.0 26.41 0.0 43.89 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1582 1719 2.186384 CTCCTCCAGCAGCTTCCG 59.814 66.667 0.0 0.0 0.00 4.30 R
2247 2404 2.262637 TCCGGTTTTCATACCACCTCT 58.737 47.619 0.0 0.0 38.12 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.413351 GGAGCAGATGCGCTACGA 59.587 61.111 9.73 0.00 44.01 3.43
18 19 1.659954 GGAGCAGATGCGCTACGAG 60.660 63.158 9.73 2.53 44.01 4.18
19 20 1.659954 GAGCAGATGCGCTACGAGG 60.660 63.158 9.73 0.00 44.01 4.63
20 21 3.333969 GCAGATGCGCTACGAGGC 61.334 66.667 9.73 0.85 0.00 4.70
21 22 2.659897 CAGATGCGCTACGAGGCC 60.660 66.667 9.73 0.00 0.00 5.19
22 23 3.147595 AGATGCGCTACGAGGCCA 61.148 61.111 9.73 0.00 0.00 5.36
23 24 2.029666 GATGCGCTACGAGGCCAT 59.970 61.111 9.73 0.00 0.00 4.40
24 25 2.280389 ATGCGCTACGAGGCCATG 60.280 61.111 9.73 0.00 0.00 3.66
26 27 4.899239 GCGCTACGAGGCCATGCT 62.899 66.667 5.01 0.00 0.00 3.79
27 28 2.202932 CGCTACGAGGCCATGCTT 60.203 61.111 5.01 0.00 0.00 3.91
28 29 2.240500 CGCTACGAGGCCATGCTTC 61.241 63.158 5.01 0.00 0.00 3.86
29 30 1.153369 GCTACGAGGCCATGCTTCA 60.153 57.895 5.01 0.00 34.22 3.02
30 31 0.744414 GCTACGAGGCCATGCTTCAA 60.744 55.000 5.01 0.00 34.22 2.69
31 32 1.959042 CTACGAGGCCATGCTTCAAT 58.041 50.000 5.01 0.00 34.22 2.57
32 33 1.600957 CTACGAGGCCATGCTTCAATG 59.399 52.381 5.01 0.00 34.22 2.82
33 34 1.065273 CGAGGCCATGCTTCAATGC 59.935 57.895 5.01 0.00 34.22 3.56
34 35 1.065273 GAGGCCATGCTTCAATGCG 59.935 57.895 5.01 0.00 34.72 4.73
35 36 1.378882 GAGGCCATGCTTCAATGCGA 61.379 55.000 5.01 0.00 34.72 5.10
36 37 1.226773 GGCCATGCTTCAATGCGAC 60.227 57.895 0.00 0.00 35.36 5.19
37 38 1.584483 GCCATGCTTCAATGCGACG 60.584 57.895 0.00 0.00 35.36 5.12
38 39 1.584483 CCATGCTTCAATGCGACGC 60.584 57.895 14.19 14.19 39.31 5.19
39 40 1.931137 CATGCTTCAATGCGACGCG 60.931 57.895 16.14 3.53 41.70 6.01
40 41 3.099619 ATGCTTCAATGCGACGCGG 62.100 57.895 16.14 7.49 41.70 6.46
41 42 3.487202 GCTTCAATGCGACGCGGA 61.487 61.111 16.14 9.89 0.00 5.54
42 43 2.697425 CTTCAATGCGACGCGGAG 59.303 61.111 16.14 4.62 0.00 4.63
43 44 2.802667 CTTCAATGCGACGCGGAGG 61.803 63.158 16.14 9.30 0.00 4.30
64 65 2.440430 TCCGGCTCGAGGAGGAAG 60.440 66.667 15.58 0.00 33.19 3.46
65 66 2.440430 CCGGCTCGAGGAGGAAGA 60.440 66.667 15.58 0.00 0.00 2.87
66 67 2.485795 CCGGCTCGAGGAGGAAGAG 61.486 68.421 15.58 0.00 35.28 2.85
67 68 2.485795 CGGCTCGAGGAGGAAGAGG 61.486 68.421 15.58 0.00 32.96 3.69
68 69 1.076632 GGCTCGAGGAGGAAGAGGA 60.077 63.158 15.58 0.00 32.96 3.71
69 70 1.106944 GGCTCGAGGAGGAAGAGGAG 61.107 65.000 15.58 0.00 32.96 3.69
70 71 0.106918 GCTCGAGGAGGAAGAGGAGA 60.107 60.000 15.58 0.00 32.96 3.71
71 72 1.683629 GCTCGAGGAGGAAGAGGAGAA 60.684 57.143 15.58 0.00 32.96 2.87
72 73 2.297701 CTCGAGGAGGAAGAGGAGAAG 58.702 57.143 3.91 0.00 0.00 2.85
73 74 1.064314 TCGAGGAGGAAGAGGAGAAGG 60.064 57.143 0.00 0.00 0.00 3.46
74 75 1.064314 CGAGGAGGAAGAGGAGAAGGA 60.064 57.143 0.00 0.00 0.00 3.36
75 76 2.666317 GAGGAGGAAGAGGAGAAGGAG 58.334 57.143 0.00 0.00 0.00 3.69
76 77 1.119684 GGAGGAAGAGGAGAAGGAGC 58.880 60.000 0.00 0.00 0.00 4.70
77 78 0.744281 GAGGAAGAGGAGAAGGAGCG 59.256 60.000 0.00 0.00 0.00 5.03
78 79 1.142965 GGAAGAGGAGAAGGAGCGC 59.857 63.158 0.00 0.00 0.00 5.92
79 80 1.226831 GAAGAGGAGAAGGAGCGCG 60.227 63.158 0.00 0.00 0.00 6.86
80 81 1.939769 GAAGAGGAGAAGGAGCGCGT 61.940 60.000 8.43 0.00 0.00 6.01
81 82 2.202676 GAGGAGAAGGAGCGCGTG 60.203 66.667 8.43 0.00 0.00 5.34
82 83 4.443266 AGGAGAAGGAGCGCGTGC 62.443 66.667 14.39 14.39 43.24 5.34
122 123 4.135153 CCACCAGACGCCGAGGAG 62.135 72.222 0.00 0.00 0.00 3.69
123 124 4.135153 CACCAGACGCCGAGGAGG 62.135 72.222 0.00 0.00 44.97 4.30
179 180 4.475135 GGCCCTGCTCCCGTCTTC 62.475 72.222 0.00 0.00 0.00 2.87
180 181 3.706373 GCCCTGCTCCCGTCTTCA 61.706 66.667 0.00 0.00 0.00 3.02
181 182 3.036429 GCCCTGCTCCCGTCTTCAT 62.036 63.158 0.00 0.00 0.00 2.57
182 183 1.144936 CCCTGCTCCCGTCTTCATC 59.855 63.158 0.00 0.00 0.00 2.92
183 184 1.227089 CCTGCTCCCGTCTTCATCG 60.227 63.158 0.00 0.00 0.00 3.84
184 185 1.667154 CCTGCTCCCGTCTTCATCGA 61.667 60.000 0.00 0.00 0.00 3.59
185 186 0.526524 CTGCTCCCGTCTTCATCGAC 60.527 60.000 0.00 0.00 0.00 4.20
186 187 1.227002 GCTCCCGTCTTCATCGACC 60.227 63.158 0.00 0.00 0.00 4.79
187 188 1.668101 GCTCCCGTCTTCATCGACCT 61.668 60.000 0.00 0.00 0.00 3.85
188 189 0.382515 CTCCCGTCTTCATCGACCTC 59.617 60.000 0.00 0.00 0.00 3.85
189 190 0.323087 TCCCGTCTTCATCGACCTCA 60.323 55.000 0.00 0.00 0.00 3.86
190 191 0.179134 CCCGTCTTCATCGACCTCAC 60.179 60.000 0.00 0.00 0.00 3.51
191 192 0.179134 CCGTCTTCATCGACCTCACC 60.179 60.000 0.00 0.00 0.00 4.02
192 193 0.523546 CGTCTTCATCGACCTCACCG 60.524 60.000 0.00 0.00 0.00 4.94
193 194 0.179134 GTCTTCATCGACCTCACCGG 60.179 60.000 0.00 0.00 39.35 5.28
194 195 1.519455 CTTCATCGACCTCACCGGC 60.519 63.158 0.00 0.00 35.61 6.13
195 196 3.350909 TTCATCGACCTCACCGGCG 62.351 63.158 0.00 0.00 35.61 6.46
196 197 3.822192 CATCGACCTCACCGGCGA 61.822 66.667 9.30 0.57 42.49 5.54
197 198 2.833582 ATCGACCTCACCGGCGAT 60.834 61.111 9.30 3.57 42.84 4.58
198 199 3.138930 ATCGACCTCACCGGCGATG 62.139 63.158 9.30 0.00 44.54 3.84
199 200 4.873129 CGACCTCACCGGCGATGG 62.873 72.222 9.30 7.19 35.30 3.51
234 235 2.999063 CCAAGGGCAAGGGCAAGG 60.999 66.667 0.00 0.00 43.71 3.61
235 236 3.698820 CAAGGGCAAGGGCAAGGC 61.699 66.667 0.00 0.00 43.71 4.35
246 247 4.719369 GCAAGGCCGACGACGTCT 62.719 66.667 24.36 4.01 37.88 4.18
247 248 2.872557 CAAGGCCGACGACGTCTA 59.127 61.111 24.36 0.00 37.88 2.59
248 249 1.226323 CAAGGCCGACGACGTCTAG 60.226 63.158 24.36 16.64 37.88 2.43
249 250 2.404995 AAGGCCGACGACGTCTAGG 61.405 63.158 24.36 19.52 37.88 3.02
250 251 3.885521 GGCCGACGACGTCTAGGG 61.886 72.222 24.36 18.86 37.88 3.53
251 252 4.549516 GCCGACGACGTCTAGGGC 62.550 72.222 23.47 23.47 37.88 5.19
252 253 3.129502 CCGACGACGTCTAGGGCA 61.130 66.667 24.36 0.00 37.88 5.36
253 254 2.403987 CGACGACGTCTAGGGCAG 59.596 66.667 24.36 4.53 34.56 4.85
254 255 2.102553 GACGACGTCTAGGGCAGC 59.897 66.667 20.52 0.00 0.00 5.25
255 256 2.675423 ACGACGTCTAGGGCAGCA 60.675 61.111 14.70 0.00 0.00 4.41
256 257 2.005960 GACGACGTCTAGGGCAGCAT 62.006 60.000 20.52 0.00 0.00 3.79
257 258 1.589993 CGACGTCTAGGGCAGCATG 60.590 63.158 14.70 0.00 40.87 4.06
286 287 2.281761 CAGGCGGGCACAGACTTT 60.282 61.111 3.78 0.00 40.62 2.66
287 288 1.898574 CAGGCGGGCACAGACTTTT 60.899 57.895 3.78 0.00 40.62 2.27
288 289 1.152756 AGGCGGGCACAGACTTTTT 60.153 52.632 3.78 0.00 40.62 1.94
334 335 9.687210 GTTTAATTAGGTTTAAGTGGACTTTGG 57.313 33.333 0.00 0.00 37.40 3.28
335 336 5.977489 ATTAGGTTTAAGTGGACTTTGGC 57.023 39.130 0.00 0.00 37.40 4.52
336 337 2.594131 AGGTTTAAGTGGACTTTGGCC 58.406 47.619 0.00 0.00 37.40 5.36
337 338 1.268625 GGTTTAAGTGGACTTTGGCCG 59.731 52.381 0.00 0.00 37.40 6.13
338 339 1.268625 GTTTAAGTGGACTTTGGCCGG 59.731 52.381 0.00 0.00 37.40 6.13
339 340 0.891904 TTAAGTGGACTTTGGCCGGC 60.892 55.000 21.18 21.18 37.40 6.13
340 341 2.058125 TAAGTGGACTTTGGCCGGCA 62.058 55.000 30.85 12.04 37.40 5.69
341 342 2.676471 GTGGACTTTGGCCGGCAT 60.676 61.111 30.85 7.51 0.00 4.40
342 343 2.117206 TGGACTTTGGCCGGCATT 59.883 55.556 30.85 6.47 0.00 3.56
343 344 1.532794 TGGACTTTGGCCGGCATTT 60.533 52.632 30.85 6.90 0.00 2.32
344 345 1.079888 GGACTTTGGCCGGCATTTG 60.080 57.895 30.85 17.43 0.00 2.32
345 346 1.531739 GGACTTTGGCCGGCATTTGA 61.532 55.000 30.85 7.93 0.00 2.69
346 347 0.532115 GACTTTGGCCGGCATTTGAT 59.468 50.000 30.85 8.59 0.00 2.57
347 348 0.532115 ACTTTGGCCGGCATTTGATC 59.468 50.000 30.85 9.47 0.00 2.92
348 349 0.526096 CTTTGGCCGGCATTTGATCG 60.526 55.000 30.85 3.51 0.00 3.69
349 350 1.943116 TTTGGCCGGCATTTGATCGG 61.943 55.000 30.85 7.96 45.84 4.18
354 355 3.924507 GGCATTTGATCGGCCACT 58.075 55.556 2.24 0.00 46.92 4.00
355 356 2.192605 GGCATTTGATCGGCCACTT 58.807 52.632 2.24 0.00 46.92 3.16
356 357 1.388547 GGCATTTGATCGGCCACTTA 58.611 50.000 2.24 0.00 46.92 2.24
357 358 1.956477 GGCATTTGATCGGCCACTTAT 59.044 47.619 2.24 0.00 46.92 1.73
358 359 2.287788 GGCATTTGATCGGCCACTTATG 60.288 50.000 2.24 0.00 46.92 1.90
359 360 2.358898 GCATTTGATCGGCCACTTATGT 59.641 45.455 2.24 0.00 0.00 2.29
360 361 3.181487 GCATTTGATCGGCCACTTATGTT 60.181 43.478 2.24 0.00 0.00 2.71
361 362 4.677779 GCATTTGATCGGCCACTTATGTTT 60.678 41.667 2.24 0.00 0.00 2.83
362 363 5.449862 GCATTTGATCGGCCACTTATGTTTA 60.450 40.000 2.24 0.00 0.00 2.01
363 364 6.735694 GCATTTGATCGGCCACTTATGTTTAT 60.736 38.462 2.24 0.00 0.00 1.40
364 365 6.767524 TTTGATCGGCCACTTATGTTTATT 57.232 33.333 2.24 0.00 0.00 1.40
365 366 6.767524 TTGATCGGCCACTTATGTTTATTT 57.232 33.333 2.24 0.00 0.00 1.40
366 367 6.371809 TGATCGGCCACTTATGTTTATTTC 57.628 37.500 2.24 0.00 0.00 2.17
367 368 4.868450 TCGGCCACTTATGTTTATTTCG 57.132 40.909 2.24 0.00 0.00 3.46
368 369 4.255301 TCGGCCACTTATGTTTATTTCGT 58.745 39.130 2.24 0.00 0.00 3.85
369 370 4.093703 TCGGCCACTTATGTTTATTTCGTG 59.906 41.667 2.24 0.00 0.00 4.35
370 371 4.102649 GGCCACTTATGTTTATTTCGTGC 58.897 43.478 0.00 0.00 0.00 5.34
371 372 3.783943 GCCACTTATGTTTATTTCGTGCG 59.216 43.478 0.00 0.00 0.00 5.34
372 373 4.436317 GCCACTTATGTTTATTTCGTGCGA 60.436 41.667 0.00 0.00 0.00 5.10
373 374 5.255596 CCACTTATGTTTATTTCGTGCGAG 58.744 41.667 0.00 0.00 0.00 5.03
374 375 4.723862 CACTTATGTTTATTTCGTGCGAGC 59.276 41.667 0.00 0.00 0.00 5.03
375 376 4.630069 ACTTATGTTTATTTCGTGCGAGCT 59.370 37.500 0.00 0.00 0.00 4.09
376 377 5.808540 ACTTATGTTTATTTCGTGCGAGCTA 59.191 36.000 0.00 0.00 0.00 3.32
377 378 6.479001 ACTTATGTTTATTTCGTGCGAGCTAT 59.521 34.615 0.00 0.00 0.00 2.97
378 379 5.734855 ATGTTTATTTCGTGCGAGCTATT 57.265 34.783 0.00 0.00 0.00 1.73
379 380 5.539582 TGTTTATTTCGTGCGAGCTATTT 57.460 34.783 0.00 0.00 0.00 1.40
380 381 5.556470 TGTTTATTTCGTGCGAGCTATTTC 58.444 37.500 0.00 0.00 0.00 2.17
381 382 5.350365 TGTTTATTTCGTGCGAGCTATTTCT 59.650 36.000 0.00 0.00 0.00 2.52
382 383 6.128391 TGTTTATTTCGTGCGAGCTATTTCTT 60.128 34.615 0.00 0.00 0.00 2.52
383 384 4.946784 ATTTCGTGCGAGCTATTTCTTT 57.053 36.364 0.00 0.00 0.00 2.52
384 385 4.742438 TTTCGTGCGAGCTATTTCTTTT 57.258 36.364 0.00 0.00 0.00 2.27
385 386 4.742438 TTCGTGCGAGCTATTTCTTTTT 57.258 36.364 0.00 0.00 0.00 1.94
386 387 4.322101 TCGTGCGAGCTATTTCTTTTTC 57.678 40.909 0.00 0.00 0.00 2.29
387 388 3.124636 TCGTGCGAGCTATTTCTTTTTCC 59.875 43.478 0.00 0.00 0.00 3.13
388 389 3.120338 CGTGCGAGCTATTTCTTTTTCCA 60.120 43.478 0.00 0.00 0.00 3.53
389 390 4.437390 CGTGCGAGCTATTTCTTTTTCCAT 60.437 41.667 0.00 0.00 0.00 3.41
390 391 4.795278 GTGCGAGCTATTTCTTTTTCCATG 59.205 41.667 0.00 0.00 0.00 3.66
391 392 4.458989 TGCGAGCTATTTCTTTTTCCATGT 59.541 37.500 0.00 0.00 0.00 3.21
392 393 5.030936 GCGAGCTATTTCTTTTTCCATGTC 58.969 41.667 0.00 0.00 0.00 3.06
393 394 5.163713 GCGAGCTATTTCTTTTTCCATGTCT 60.164 40.000 0.00 0.00 0.00 3.41
394 395 6.253746 CGAGCTATTTCTTTTTCCATGTCTG 58.746 40.000 0.00 0.00 0.00 3.51
395 396 5.958955 AGCTATTTCTTTTTCCATGTCTGC 58.041 37.500 0.00 0.00 0.00 4.26
396 397 5.477984 AGCTATTTCTTTTTCCATGTCTGCA 59.522 36.000 0.00 0.00 0.00 4.41
397 398 6.154021 AGCTATTTCTTTTTCCATGTCTGCAT 59.846 34.615 0.00 0.00 35.32 3.96
398 399 7.340232 AGCTATTTCTTTTTCCATGTCTGCATA 59.660 33.333 0.00 0.00 33.30 3.14
399 400 8.139989 GCTATTTCTTTTTCCATGTCTGCATAT 58.860 33.333 0.00 0.00 33.30 1.78
402 403 8.537049 TTTCTTTTTCCATGTCTGCATATTTG 57.463 30.769 0.00 0.00 33.30 2.32
403 404 6.632909 TCTTTTTCCATGTCTGCATATTTGG 58.367 36.000 0.00 0.00 33.30 3.28
404 405 5.341872 TTTTCCATGTCTGCATATTTGGG 57.658 39.130 0.00 0.00 33.30 4.12
405 406 2.309613 TCCATGTCTGCATATTTGGGC 58.690 47.619 0.00 0.00 33.30 5.36
406 407 1.342174 CCATGTCTGCATATTTGGGCC 59.658 52.381 0.00 0.00 33.30 5.80
407 408 2.033372 CATGTCTGCATATTTGGGCCA 58.967 47.619 0.00 0.00 33.30 5.36
408 409 1.766494 TGTCTGCATATTTGGGCCAG 58.234 50.000 6.23 0.00 0.00 4.85
409 410 0.386838 GTCTGCATATTTGGGCCAGC 59.613 55.000 6.23 7.09 0.00 4.85
410 411 0.756442 TCTGCATATTTGGGCCAGCC 60.756 55.000 6.23 0.00 0.00 4.85
411 412 0.757935 CTGCATATTTGGGCCAGCCT 60.758 55.000 6.23 0.00 36.10 4.58
412 413 0.325484 TGCATATTTGGGCCAGCCTT 60.325 50.000 6.23 0.00 36.10 4.35
413 414 0.390492 GCATATTTGGGCCAGCCTTC 59.610 55.000 6.23 0.00 36.10 3.46
414 415 1.043022 CATATTTGGGCCAGCCTTCC 58.957 55.000 6.23 0.00 36.10 3.46
415 416 0.105504 ATATTTGGGCCAGCCTTCCC 60.106 55.000 6.23 0.00 42.93 3.97
416 417 2.566111 TATTTGGGCCAGCCTTCCCG 62.566 60.000 6.23 0.00 45.60 5.14
421 422 4.344865 GCCAGCCTTCCCGTTGGA 62.345 66.667 0.00 0.00 39.54 3.53
422 423 2.359975 CCAGCCTTCCCGTTGGAC 60.360 66.667 0.00 0.00 41.57 4.02
423 424 2.742372 CAGCCTTCCCGTTGGACG 60.742 66.667 0.00 0.00 41.57 4.79
432 433 3.637714 CGTTGGACGGTCCTGTTG 58.362 61.111 26.41 11.03 38.08 3.33
433 434 1.068417 CGTTGGACGGTCCTGTTGA 59.932 57.895 26.41 4.36 38.08 3.18
434 435 1.219522 CGTTGGACGGTCCTGTTGAC 61.220 60.000 26.41 15.46 43.67 3.18
435 436 0.106149 GTTGGACGGTCCTGTTGACT 59.894 55.000 26.41 0.00 43.89 3.41
436 437 0.391597 TTGGACGGTCCTGTTGACTC 59.608 55.000 26.41 0.00 43.89 3.36
437 438 1.080705 GGACGGTCCTGTTGACTCG 60.081 63.158 19.92 0.00 43.89 4.18
438 439 1.733399 GACGGTCCTGTTGACTCGC 60.733 63.158 0.00 0.00 43.89 5.03
439 440 2.432628 CGGTCCTGTTGACTCGCC 60.433 66.667 0.00 0.00 43.89 5.54
440 441 2.047179 GGTCCTGTTGACTCGCCC 60.047 66.667 0.00 0.00 43.89 6.13
441 442 2.584391 GGTCCTGTTGACTCGCCCT 61.584 63.158 0.00 0.00 43.89 5.19
442 443 1.374758 GTCCTGTTGACTCGCCCTG 60.375 63.158 0.00 0.00 41.03 4.45
443 444 1.837051 TCCTGTTGACTCGCCCTGT 60.837 57.895 0.00 0.00 0.00 4.00
444 445 1.071471 CCTGTTGACTCGCCCTGTT 59.929 57.895 0.00 0.00 0.00 3.16
445 446 1.230635 CCTGTTGACTCGCCCTGTTG 61.231 60.000 0.00 0.00 0.00 3.33
446 447 0.249868 CTGTTGACTCGCCCTGTTGA 60.250 55.000 0.00 0.00 0.00 3.18
447 448 0.179234 TGTTGACTCGCCCTGTTGAA 59.821 50.000 0.00 0.00 0.00 2.69
448 449 0.868406 GTTGACTCGCCCTGTTGAAG 59.132 55.000 0.00 0.00 0.00 3.02
449 450 0.468226 TTGACTCGCCCTGTTGAAGT 59.532 50.000 0.00 0.00 0.00 3.01
450 451 0.468226 TGACTCGCCCTGTTGAAGTT 59.532 50.000 0.00 0.00 0.00 2.66
451 452 0.868406 GACTCGCCCTGTTGAAGTTG 59.132 55.000 0.00 0.00 0.00 3.16
452 453 1.166531 ACTCGCCCTGTTGAAGTTGC 61.167 55.000 0.00 0.00 0.00 4.17
453 454 0.886490 CTCGCCCTGTTGAAGTTGCT 60.886 55.000 0.00 0.00 0.00 3.91
454 455 0.884704 TCGCCCTGTTGAAGTTGCTC 60.885 55.000 0.00 0.00 0.00 4.26
455 456 0.886490 CGCCCTGTTGAAGTTGCTCT 60.886 55.000 0.00 0.00 0.00 4.09
456 457 1.322442 GCCCTGTTGAAGTTGCTCTT 58.678 50.000 0.00 0.00 39.32 2.85
457 458 2.504367 GCCCTGTTGAAGTTGCTCTTA 58.496 47.619 0.00 0.00 36.40 2.10
458 459 2.226674 GCCCTGTTGAAGTTGCTCTTAC 59.773 50.000 0.00 0.00 36.40 2.34
459 460 3.744660 CCCTGTTGAAGTTGCTCTTACT 58.255 45.455 0.00 0.00 36.40 2.24
460 461 4.137543 CCCTGTTGAAGTTGCTCTTACTT 58.862 43.478 0.00 0.00 38.49 2.24
461 462 4.023707 CCCTGTTGAAGTTGCTCTTACTTG 60.024 45.833 0.00 0.00 36.04 3.16
462 463 4.576463 CCTGTTGAAGTTGCTCTTACTTGT 59.424 41.667 0.00 0.00 36.04 3.16
463 464 5.484173 TGTTGAAGTTGCTCTTACTTGTG 57.516 39.130 0.00 0.00 36.04 3.33
464 465 4.941263 TGTTGAAGTTGCTCTTACTTGTGT 59.059 37.500 0.00 0.00 36.04 3.72
465 466 5.163764 TGTTGAAGTTGCTCTTACTTGTGTG 60.164 40.000 0.00 0.00 36.04 3.82
466 467 3.312421 TGAAGTTGCTCTTACTTGTGTGC 59.688 43.478 0.00 0.00 36.04 4.57
467 468 2.222027 AGTTGCTCTTACTTGTGTGCC 58.778 47.619 0.00 0.00 0.00 5.01
468 469 1.266989 GTTGCTCTTACTTGTGTGCCC 59.733 52.381 0.00 0.00 0.00 5.36
469 470 0.602638 TGCTCTTACTTGTGTGCCCG 60.603 55.000 0.00 0.00 0.00 6.13
470 471 1.912371 GCTCTTACTTGTGTGCCCGC 61.912 60.000 0.00 0.00 0.00 6.13
471 472 0.602638 CTCTTACTTGTGTGCCCGCA 60.603 55.000 0.00 0.00 0.00 5.69
472 473 0.179043 TCTTACTTGTGTGCCCGCAA 60.179 50.000 0.00 0.00 38.70 4.85
473 474 0.881118 CTTACTTGTGTGCCCGCAAT 59.119 50.000 0.00 0.00 40.13 3.56
474 475 0.595588 TTACTTGTGTGCCCGCAATG 59.404 50.000 0.00 0.00 40.13 2.82
475 476 0.536233 TACTTGTGTGCCCGCAATGT 60.536 50.000 0.00 0.00 40.13 2.71
476 477 1.372004 CTTGTGTGCCCGCAATGTG 60.372 57.895 0.00 0.00 40.13 3.21
525 526 1.986413 CCTCTGGAGGTGAGTTGGG 59.014 63.158 8.39 0.00 43.61 4.12
565 566 0.747283 GCCTGCATCCTCTGAGTTGG 60.747 60.000 3.66 0.00 0.00 3.77
566 567 0.617413 CCTGCATCCTCTGAGTTGGT 59.383 55.000 3.66 0.00 0.00 3.67
569 570 0.615331 GCATCCTCTGAGTTGGTGGA 59.385 55.000 3.66 0.00 0.00 4.02
577 578 3.743521 TCTGAGTTGGTGGAAACATCTG 58.256 45.455 0.00 0.00 43.86 2.90
590 591 4.095483 GGAAACATCTGACCAGCATGTTAG 59.905 45.833 18.70 0.00 37.76 2.34
594 595 1.901833 TCTGACCAGCATGTTAGCAGA 59.098 47.619 0.00 0.00 36.85 4.26
598 599 3.260632 TGACCAGCATGTTAGCAGAGTAA 59.739 43.478 0.00 0.00 36.85 2.24
604 605 6.032094 CAGCATGTTAGCAGAGTAAAAATGG 58.968 40.000 0.00 0.00 36.85 3.16
607 608 7.393234 AGCATGTTAGCAGAGTAAAAATGGTAA 59.607 33.333 0.00 0.00 35.27 2.85
614 615 8.507524 AGCAGAGTAAAAATGGTAAATAGACC 57.492 34.615 0.00 0.00 40.21 3.85
637 638 2.490509 GTGTTTAATAAGCCAGCCGGTT 59.509 45.455 1.90 0.00 35.92 4.44
638 639 2.750712 TGTTTAATAAGCCAGCCGGTTC 59.249 45.455 1.90 0.00 33.27 3.62
639 640 1.658994 TTAATAAGCCAGCCGGTTCG 58.341 50.000 1.90 0.00 33.27 3.95
715 743 5.646577 AATGCTACAGTACTCGTTTCTCT 57.353 39.130 0.00 0.00 0.00 3.10
729 772 0.178981 TTCTCTTTGCTTGCCTGCCT 60.179 50.000 0.00 0.00 0.00 4.75
796 854 2.936498 ACCTCGAGACACAACAAAACAG 59.064 45.455 15.71 0.00 0.00 3.16
805 863 3.505680 ACACAACAAAACAGAACAGAGCA 59.494 39.130 0.00 0.00 0.00 4.26
807 865 4.560035 CACAACAAAACAGAACAGAGCAAG 59.440 41.667 0.00 0.00 0.00 4.01
1032 1103 2.291043 GGAGAGAAGCCCCCACGAA 61.291 63.158 0.00 0.00 0.00 3.85
1148 1219 0.173481 TTCGTCAAGATCAGCTCGGG 59.827 55.000 0.00 0.00 0.00 5.14
1170 1244 2.180769 CATGCCGAGGACGACGAA 59.819 61.111 0.00 0.00 42.66 3.85
1271 1393 2.006888 GCAGCACCGCAAGAATACTAA 58.993 47.619 0.00 0.00 43.02 2.24
1602 1739 1.548357 GGAAGCTGCTGGAGGAGACA 61.548 60.000 1.35 0.00 35.31 3.41
1611 1748 2.276116 GGAGGAGACAGTGTGGCGA 61.276 63.158 0.00 0.00 0.00 5.54
1925 2073 3.357079 GCTGGGAGTGTTGTGCGG 61.357 66.667 0.00 0.00 0.00 5.69
1949 2097 6.333416 GGCTTTGAACTGTTTTTCTTCTTCT 58.667 36.000 0.00 0.00 0.00 2.85
2033 2181 9.816354 GAGCTACTACTAGTACTACTACTTTGT 57.184 37.037 0.00 0.00 34.79 2.83
2156 2313 2.689471 TCCAAATGCGAATCCAAGGATG 59.311 45.455 1.66 0.00 34.70 3.51
2222 2379 5.518128 TGTGGTCAAAATTCGACACAAAATG 59.482 36.000 9.47 0.00 34.97 2.32
2228 2385 7.643764 GTCAAAATTCGACACAAAATGAGAAGA 59.356 33.333 3.68 0.00 34.07 2.87
2247 2404 2.852449 AGAGGGCCAATAAATCAGGACA 59.148 45.455 6.18 0.00 29.65 4.02
2267 2424 2.027561 CAGAGGTGGTATGAAAACCGGA 60.028 50.000 9.46 0.00 42.91 5.14
2272 2429 3.508402 GGTGGTATGAAAACCGGAAATGT 59.492 43.478 9.46 0.00 42.91 2.71
2275 2432 6.319399 GTGGTATGAAAACCGGAAATGTAAG 58.681 40.000 9.46 0.00 42.91 2.34
2337 2494 2.299013 TGCGGACACAGTTATGAGAACT 59.701 45.455 0.00 0.00 0.00 3.01
2364 2521 4.003648 ACGTCTGCTCCTATTTTTGAAGG 58.996 43.478 0.00 0.00 0.00 3.46
2383 2540 6.508777 TGAAGGCCAAAACACTTACAATAAC 58.491 36.000 5.01 0.00 0.00 1.89
2409 2566 8.219769 CAGCATATCAAATCTTCGATGAGTTAC 58.780 37.037 12.79 1.41 0.00 2.50
2422 2579 5.462068 TCGATGAGTTACTATTCAAATGCGG 59.538 40.000 0.00 0.00 0.00 5.69
2428 2585 5.878116 AGTTACTATTCAAATGCGGCACTAA 59.122 36.000 4.03 0.00 0.00 2.24
2511 2668 3.991605 ACTCGCACATATGTTTTCGTC 57.008 42.857 5.37 0.00 0.00 4.20
2582 2739 0.666880 ATGAGATGCTCGATGCTCGC 60.667 55.000 8.07 0.00 43.37 5.03
2593 2750 3.735143 TGCTCGCGCATATTGCAT 58.265 50.000 8.75 0.00 45.36 3.96
2601 2758 5.663773 GCTCGCGCATATTGCATTTTTATTC 60.664 40.000 8.75 0.00 45.36 1.75
2742 2905 4.946160 TGGATCAACCTAGGACCAAAAT 57.054 40.909 17.98 0.00 39.86 1.82
2783 2946 2.924290 GCGTTCAATACAGAGGACTGAC 59.076 50.000 0.00 0.00 46.03 3.51
2849 3012 5.700402 AGTGCTCCAAATCTAATACCACT 57.300 39.130 0.00 0.00 0.00 4.00
2853 3016 4.780815 CTCCAAATCTAATACCACTGGCA 58.219 43.478 0.00 0.00 0.00 4.92
2876 3039 2.096218 GTCAGCGTCTTTCAAGCGATTT 60.096 45.455 7.33 0.00 35.78 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.659954 CTCGTAGCGCATCTGCTCC 60.660 63.158 11.47 0.00 45.87 4.70
4 5 2.659897 GGCCTCGTAGCGCATCTG 60.660 66.667 11.47 0.00 0.00 2.90
5 6 2.502492 ATGGCCTCGTAGCGCATCT 61.502 57.895 11.47 0.00 0.00 2.90
6 7 2.029666 ATGGCCTCGTAGCGCATC 59.970 61.111 11.47 0.04 0.00 3.91
7 8 2.280389 CATGGCCTCGTAGCGCAT 60.280 61.111 11.47 0.00 0.00 4.73
9 10 4.899239 AGCATGGCCTCGTAGCGC 62.899 66.667 3.32 0.00 0.00 5.92
10 11 2.202932 AAGCATGGCCTCGTAGCG 60.203 61.111 3.32 0.00 0.00 4.26
11 12 0.744414 TTGAAGCATGGCCTCGTAGC 60.744 55.000 3.32 0.34 0.00 3.58
12 13 1.600957 CATTGAAGCATGGCCTCGTAG 59.399 52.381 3.32 0.00 0.00 3.51
13 14 1.667236 CATTGAAGCATGGCCTCGTA 58.333 50.000 3.32 0.00 0.00 3.43
14 15 1.660560 GCATTGAAGCATGGCCTCGT 61.661 55.000 3.32 0.00 0.00 4.18
15 16 1.065273 GCATTGAAGCATGGCCTCG 59.935 57.895 3.32 0.00 0.00 4.63
16 17 1.065273 CGCATTGAAGCATGGCCTC 59.935 57.895 3.32 0.00 0.00 4.70
17 18 1.378911 TCGCATTGAAGCATGGCCT 60.379 52.632 3.32 0.00 0.00 5.19
18 19 1.226773 GTCGCATTGAAGCATGGCC 60.227 57.895 0.00 0.00 0.00 5.36
19 20 1.584483 CGTCGCATTGAAGCATGGC 60.584 57.895 0.00 0.00 0.00 4.40
20 21 4.676444 CGTCGCATTGAAGCATGG 57.324 55.556 0.00 0.00 0.00 3.66
24 25 3.425938 CTCCGCGTCGCATTGAAGC 62.426 63.158 18.75 0.00 46.95 3.86
25 26 2.697425 CTCCGCGTCGCATTGAAG 59.303 61.111 18.75 2.65 0.00 3.02
26 27 2.813474 CCTCCGCGTCGCATTGAA 60.813 61.111 18.75 0.00 0.00 2.69
46 47 2.440430 TTCCTCCTCGAGCCGGAG 60.440 66.667 5.05 14.43 46.11 4.63
47 48 2.440430 CTTCCTCCTCGAGCCGGA 60.440 66.667 5.05 14.68 0.00 5.14
48 49 2.440430 TCTTCCTCCTCGAGCCGG 60.440 66.667 6.99 9.40 0.00 6.13
49 50 2.485795 CCTCTTCCTCCTCGAGCCG 61.486 68.421 6.99 0.00 0.00 5.52
50 51 1.076632 TCCTCTTCCTCCTCGAGCC 60.077 63.158 6.99 0.00 0.00 4.70
51 52 0.106918 TCTCCTCTTCCTCCTCGAGC 60.107 60.000 6.99 0.00 0.00 5.03
52 53 2.297701 CTTCTCCTCTTCCTCCTCGAG 58.702 57.143 5.13 5.13 0.00 4.04
53 54 1.064314 CCTTCTCCTCTTCCTCCTCGA 60.064 57.143 0.00 0.00 0.00 4.04
54 55 1.064314 TCCTTCTCCTCTTCCTCCTCG 60.064 57.143 0.00 0.00 0.00 4.63
55 56 2.666317 CTCCTTCTCCTCTTCCTCCTC 58.334 57.143 0.00 0.00 0.00 3.71
56 57 1.342975 GCTCCTTCTCCTCTTCCTCCT 60.343 57.143 0.00 0.00 0.00 3.69
57 58 1.119684 GCTCCTTCTCCTCTTCCTCC 58.880 60.000 0.00 0.00 0.00 4.30
58 59 0.744281 CGCTCCTTCTCCTCTTCCTC 59.256 60.000 0.00 0.00 0.00 3.71
59 60 1.326951 GCGCTCCTTCTCCTCTTCCT 61.327 60.000 0.00 0.00 0.00 3.36
60 61 1.142965 GCGCTCCTTCTCCTCTTCC 59.857 63.158 0.00 0.00 0.00 3.46
61 62 1.226831 CGCGCTCCTTCTCCTCTTC 60.227 63.158 5.56 0.00 0.00 2.87
62 63 1.979693 ACGCGCTCCTTCTCCTCTT 60.980 57.895 5.73 0.00 0.00 2.85
63 64 2.361865 ACGCGCTCCTTCTCCTCT 60.362 61.111 5.73 0.00 0.00 3.69
64 65 2.202676 CACGCGCTCCTTCTCCTC 60.203 66.667 5.73 0.00 0.00 3.71
65 66 4.443266 GCACGCGCTCCTTCTCCT 62.443 66.667 5.73 0.00 34.30 3.69
105 106 4.135153 CTCCTCGGCGTCTGGTGG 62.135 72.222 6.85 1.30 0.00 4.61
106 107 4.135153 CCTCCTCGGCGTCTGGTG 62.135 72.222 6.85 8.84 0.00 4.17
162 163 4.475135 GAAGACGGGAGCAGGGCC 62.475 72.222 0.00 0.00 0.00 5.80
163 164 2.932130 GATGAAGACGGGAGCAGGGC 62.932 65.000 0.00 0.00 0.00 5.19
164 165 1.144936 GATGAAGACGGGAGCAGGG 59.855 63.158 0.00 0.00 0.00 4.45
165 166 1.227089 CGATGAAGACGGGAGCAGG 60.227 63.158 0.00 0.00 0.00 4.85
166 167 0.526524 GTCGATGAAGACGGGAGCAG 60.527 60.000 0.00 0.00 0.00 4.24
167 168 1.511305 GTCGATGAAGACGGGAGCA 59.489 57.895 0.00 0.00 0.00 4.26
168 169 1.227002 GGTCGATGAAGACGGGAGC 60.227 63.158 0.00 0.00 41.81 4.70
169 170 0.382515 GAGGTCGATGAAGACGGGAG 59.617 60.000 0.00 0.00 41.81 4.30
170 171 0.323087 TGAGGTCGATGAAGACGGGA 60.323 55.000 0.00 0.00 41.81 5.14
171 172 0.179134 GTGAGGTCGATGAAGACGGG 60.179 60.000 0.00 0.00 41.81 5.28
172 173 0.179134 GGTGAGGTCGATGAAGACGG 60.179 60.000 0.00 0.00 41.81 4.79
173 174 0.523546 CGGTGAGGTCGATGAAGACG 60.524 60.000 0.00 0.00 41.81 4.18
174 175 0.179134 CCGGTGAGGTCGATGAAGAC 60.179 60.000 0.00 0.00 40.25 3.01
175 176 1.945354 GCCGGTGAGGTCGATGAAGA 61.945 60.000 1.90 0.00 43.70 2.87
176 177 1.519455 GCCGGTGAGGTCGATGAAG 60.519 63.158 1.90 0.00 43.70 3.02
177 178 2.577059 GCCGGTGAGGTCGATGAA 59.423 61.111 1.90 0.00 43.70 2.57
178 179 3.822192 CGCCGGTGAGGTCGATGA 61.822 66.667 10.20 0.00 43.70 2.92
179 180 3.822192 TCGCCGGTGAGGTCGATG 61.822 66.667 15.21 0.00 41.26 3.84
180 181 2.833582 ATCGCCGGTGAGGTCGAT 60.834 61.111 24.04 14.76 46.36 3.59
181 182 3.822192 CATCGCCGGTGAGGTCGA 61.822 66.667 24.04 12.97 46.58 4.20
182 183 4.873129 CCATCGCCGGTGAGGTCG 62.873 72.222 26.27 9.99 43.70 4.79
217 218 2.999063 CCTTGCCCTTGCCCTTGG 60.999 66.667 0.00 0.00 36.33 3.61
218 219 3.698820 GCCTTGCCCTTGCCCTTG 61.699 66.667 0.00 0.00 36.33 3.61
234 235 4.549516 GCCCTAGACGTCGTCGGC 62.550 72.222 21.69 21.69 46.75 5.54
235 236 3.109612 CTGCCCTAGACGTCGTCGG 62.110 68.421 19.11 15.24 41.85 4.79
236 237 2.403987 CTGCCCTAGACGTCGTCG 59.596 66.667 19.11 6.52 37.67 5.12
237 238 2.005960 ATGCTGCCCTAGACGTCGTC 62.006 60.000 17.70 17.70 0.00 4.20
238 239 2.052690 ATGCTGCCCTAGACGTCGT 61.053 57.895 10.46 0.00 0.00 4.34
239 240 1.589993 CATGCTGCCCTAGACGTCG 60.590 63.158 10.46 0.00 0.00 5.12
240 241 1.884926 GCATGCTGCCCTAGACGTC 60.885 63.158 11.37 7.70 37.42 4.34
241 242 2.187946 GCATGCTGCCCTAGACGT 59.812 61.111 11.37 0.00 37.42 4.34
242 243 2.963854 CGCATGCTGCCCTAGACG 60.964 66.667 17.13 0.00 41.12 4.18
243 244 2.590007 CCGCATGCTGCCCTAGAC 60.590 66.667 17.13 0.00 41.12 2.59
244 245 3.865383 CCCGCATGCTGCCCTAGA 61.865 66.667 17.13 0.00 41.12 2.43
245 246 4.943252 CCCCGCATGCTGCCCTAG 62.943 72.222 17.13 0.00 41.12 3.02
269 270 1.455383 AAAAAGTCTGTGCCCGCCTG 61.455 55.000 0.00 0.00 0.00 4.85
270 271 1.152756 AAAAAGTCTGTGCCCGCCT 60.153 52.632 0.00 0.00 0.00 5.52
271 272 3.443588 AAAAAGTCTGTGCCCGCC 58.556 55.556 0.00 0.00 0.00 6.13
308 309 9.687210 CCAAAGTCCACTTAAACCTAATTAAAC 57.313 33.333 0.00 0.00 34.61 2.01
309 310 8.361889 GCCAAAGTCCACTTAAACCTAATTAAA 58.638 33.333 0.00 0.00 34.61 1.52
310 311 7.039574 GGCCAAAGTCCACTTAAACCTAATTAA 60.040 37.037 0.00 0.00 34.61 1.40
311 312 6.434965 GGCCAAAGTCCACTTAAACCTAATTA 59.565 38.462 0.00 0.00 34.61 1.40
312 313 5.245301 GGCCAAAGTCCACTTAAACCTAATT 59.755 40.000 0.00 0.00 34.61 1.40
313 314 4.770531 GGCCAAAGTCCACTTAAACCTAAT 59.229 41.667 0.00 0.00 34.61 1.73
314 315 4.146564 GGCCAAAGTCCACTTAAACCTAA 58.853 43.478 0.00 0.00 34.61 2.69
315 316 3.758425 GGCCAAAGTCCACTTAAACCTA 58.242 45.455 0.00 0.00 34.61 3.08
316 317 2.594131 GGCCAAAGTCCACTTAAACCT 58.406 47.619 0.00 0.00 34.61 3.50
317 318 1.268625 CGGCCAAAGTCCACTTAAACC 59.731 52.381 2.24 0.00 34.61 3.27
318 319 1.268625 CCGGCCAAAGTCCACTTAAAC 59.731 52.381 2.24 0.00 34.61 2.01
319 320 1.611519 CCGGCCAAAGTCCACTTAAA 58.388 50.000 2.24 0.00 34.61 1.52
320 321 0.891904 GCCGGCCAAAGTCCACTTAA 60.892 55.000 18.11 0.00 34.61 1.85
321 322 1.302993 GCCGGCCAAAGTCCACTTA 60.303 57.895 18.11 0.00 34.61 2.24
322 323 2.597510 GCCGGCCAAAGTCCACTT 60.598 61.111 18.11 0.00 37.91 3.16
323 324 2.713531 AATGCCGGCCAAAGTCCACT 62.714 55.000 26.77 0.00 0.00 4.00
324 325 1.815817 AAATGCCGGCCAAAGTCCAC 61.816 55.000 26.77 0.00 0.00 4.02
325 326 1.532794 AAATGCCGGCCAAAGTCCA 60.533 52.632 26.77 1.65 0.00 4.02
326 327 1.079888 CAAATGCCGGCCAAAGTCC 60.080 57.895 26.77 0.00 0.00 3.85
327 328 0.532115 ATCAAATGCCGGCCAAAGTC 59.468 50.000 26.77 0.00 0.00 3.01
328 329 0.532115 GATCAAATGCCGGCCAAAGT 59.468 50.000 26.77 0.30 0.00 2.66
329 330 0.526096 CGATCAAATGCCGGCCAAAG 60.526 55.000 26.77 12.03 0.00 2.77
330 331 1.510383 CGATCAAATGCCGGCCAAA 59.490 52.632 26.77 5.45 0.00 3.28
331 332 2.413963 CCGATCAAATGCCGGCCAA 61.414 57.895 26.77 6.41 36.62 4.52
332 333 2.828095 CCGATCAAATGCCGGCCA 60.828 61.111 26.77 12.96 36.62 5.36
337 338 1.388547 TAAGTGGCCGATCAAATGCC 58.611 50.000 0.00 5.79 45.56 4.40
338 339 2.358898 ACATAAGTGGCCGATCAAATGC 59.641 45.455 0.00 0.00 0.00 3.56
339 340 4.637483 AACATAAGTGGCCGATCAAATG 57.363 40.909 0.00 0.00 0.00 2.32
340 341 6.959639 ATAAACATAAGTGGCCGATCAAAT 57.040 33.333 0.00 0.00 0.00 2.32
341 342 6.767524 AATAAACATAAGTGGCCGATCAAA 57.232 33.333 0.00 0.00 0.00 2.69
342 343 6.457663 CGAAATAAACATAAGTGGCCGATCAA 60.458 38.462 0.00 0.00 0.00 2.57
343 344 5.007234 CGAAATAAACATAAGTGGCCGATCA 59.993 40.000 0.00 0.00 0.00 2.92
344 345 5.007332 ACGAAATAAACATAAGTGGCCGATC 59.993 40.000 0.00 0.00 0.00 3.69
345 346 4.879545 ACGAAATAAACATAAGTGGCCGAT 59.120 37.500 0.00 0.00 0.00 4.18
346 347 4.093703 CACGAAATAAACATAAGTGGCCGA 59.906 41.667 0.00 0.00 0.00 5.54
347 348 4.339429 CACGAAATAAACATAAGTGGCCG 58.661 43.478 0.00 0.00 0.00 6.13
348 349 4.102649 GCACGAAATAAACATAAGTGGCC 58.897 43.478 0.00 0.00 0.00 5.36
349 350 3.783943 CGCACGAAATAAACATAAGTGGC 59.216 43.478 0.00 0.00 0.00 5.01
350 351 5.211266 TCGCACGAAATAAACATAAGTGG 57.789 39.130 0.00 0.00 0.00 4.00
351 352 4.723862 GCTCGCACGAAATAAACATAAGTG 59.276 41.667 0.00 0.00 0.00 3.16
352 353 4.630069 AGCTCGCACGAAATAAACATAAGT 59.370 37.500 0.00 0.00 0.00 2.24
353 354 5.143916 AGCTCGCACGAAATAAACATAAG 57.856 39.130 0.00 0.00 0.00 1.73
354 355 6.838198 ATAGCTCGCACGAAATAAACATAA 57.162 33.333 0.00 0.00 0.00 1.90
355 356 6.838198 AATAGCTCGCACGAAATAAACATA 57.162 33.333 0.00 0.00 0.00 2.29
356 357 5.734855 AATAGCTCGCACGAAATAAACAT 57.265 34.783 0.00 0.00 0.00 2.71
357 358 5.350365 AGAAATAGCTCGCACGAAATAAACA 59.650 36.000 0.00 0.00 0.00 2.83
358 359 5.796813 AGAAATAGCTCGCACGAAATAAAC 58.203 37.500 0.00 0.00 0.00 2.01
359 360 6.417191 AAGAAATAGCTCGCACGAAATAAA 57.583 33.333 0.00 0.00 0.00 1.40
360 361 6.417191 AAAGAAATAGCTCGCACGAAATAA 57.583 33.333 0.00 0.00 0.00 1.40
361 362 6.417191 AAAAGAAATAGCTCGCACGAAATA 57.583 33.333 0.00 0.00 0.00 1.40
362 363 4.946784 AAAGAAATAGCTCGCACGAAAT 57.053 36.364 0.00 0.00 0.00 2.17
363 364 4.742438 AAAAGAAATAGCTCGCACGAAA 57.258 36.364 0.00 0.00 0.00 3.46
364 365 4.378046 GGAAAAAGAAATAGCTCGCACGAA 60.378 41.667 0.00 0.00 0.00 3.85
365 366 3.124636 GGAAAAAGAAATAGCTCGCACGA 59.875 43.478 0.00 0.00 0.00 4.35
366 367 3.120338 TGGAAAAAGAAATAGCTCGCACG 60.120 43.478 0.00 0.00 0.00 5.34
367 368 4.419522 TGGAAAAAGAAATAGCTCGCAC 57.580 40.909 0.00 0.00 0.00 5.34
368 369 4.458989 ACATGGAAAAAGAAATAGCTCGCA 59.541 37.500 0.00 0.00 0.00 5.10
369 370 4.986622 ACATGGAAAAAGAAATAGCTCGC 58.013 39.130 0.00 0.00 0.00 5.03
370 371 6.253746 CAGACATGGAAAAAGAAATAGCTCG 58.746 40.000 0.00 0.00 0.00 5.03
371 372 6.032717 GCAGACATGGAAAAAGAAATAGCTC 58.967 40.000 0.00 0.00 0.00 4.09
372 373 5.477984 TGCAGACATGGAAAAAGAAATAGCT 59.522 36.000 0.00 0.00 0.00 3.32
373 374 5.713025 TGCAGACATGGAAAAAGAAATAGC 58.287 37.500 0.00 0.00 0.00 2.97
376 377 9.158233 CAAATATGCAGACATGGAAAAAGAAAT 57.842 29.630 0.00 0.00 37.04 2.17
377 378 7.603404 CCAAATATGCAGACATGGAAAAAGAAA 59.397 33.333 8.21 0.00 37.04 2.52
378 379 7.098477 CCAAATATGCAGACATGGAAAAAGAA 58.902 34.615 8.21 0.00 37.04 2.52
379 380 6.351202 CCCAAATATGCAGACATGGAAAAAGA 60.351 38.462 14.17 0.00 37.04 2.52
380 381 5.813672 CCCAAATATGCAGACATGGAAAAAG 59.186 40.000 14.17 0.00 37.04 2.27
381 382 5.732633 CCCAAATATGCAGACATGGAAAAA 58.267 37.500 14.17 0.00 37.04 1.94
382 383 4.382901 GCCCAAATATGCAGACATGGAAAA 60.383 41.667 14.17 0.00 37.04 2.29
383 384 3.132646 GCCCAAATATGCAGACATGGAAA 59.867 43.478 14.17 0.00 37.04 3.13
384 385 2.694628 GCCCAAATATGCAGACATGGAA 59.305 45.455 14.17 0.00 37.04 3.53
385 386 2.309613 GCCCAAATATGCAGACATGGA 58.690 47.619 14.17 0.00 37.04 3.41
386 387 1.342174 GGCCCAAATATGCAGACATGG 59.658 52.381 7.15 7.15 37.04 3.66
387 388 2.033372 TGGCCCAAATATGCAGACATG 58.967 47.619 0.00 0.00 37.04 3.21
388 389 2.313317 CTGGCCCAAATATGCAGACAT 58.687 47.619 0.00 0.00 40.49 3.06
389 390 1.766494 CTGGCCCAAATATGCAGACA 58.234 50.000 0.00 0.00 0.00 3.41
390 391 0.386838 GCTGGCCCAAATATGCAGAC 59.613 55.000 0.00 0.00 0.00 3.51
391 392 0.756442 GGCTGGCCCAAATATGCAGA 60.756 55.000 0.00 0.00 0.00 4.26
392 393 0.757935 AGGCTGGCCCAAATATGCAG 60.758 55.000 8.11 0.00 36.58 4.41
393 394 0.325484 AAGGCTGGCCCAAATATGCA 60.325 50.000 8.11 0.00 36.58 3.96
394 395 0.390492 GAAGGCTGGCCCAAATATGC 59.610 55.000 8.11 0.00 36.58 3.14
395 396 1.043022 GGAAGGCTGGCCCAAATATG 58.957 55.000 8.11 0.00 36.58 1.78
396 397 0.105504 GGGAAGGCTGGCCCAAATAT 60.106 55.000 18.16 0.00 44.07 1.28
397 398 1.309688 GGGAAGGCTGGCCCAAATA 59.690 57.895 18.16 0.00 44.07 1.40
398 399 2.039462 GGGAAGGCTGGCCCAAAT 59.961 61.111 18.16 0.00 44.07 2.32
399 400 4.676951 CGGGAAGGCTGGCCCAAA 62.677 66.667 21.56 0.00 44.94 3.28
404 405 4.344865 TCCAACGGGAAGGCTGGC 62.345 66.667 0.00 0.00 41.32 4.85
415 416 1.068417 TCAACAGGACCGTCCAACG 59.932 57.895 19.95 9.84 39.61 4.10
416 417 2.613390 GTCAACAGGACCGTCCAAC 58.387 57.895 19.95 5.93 39.61 3.77
425 426 1.407656 AACAGGGCGAGTCAACAGGA 61.408 55.000 0.00 0.00 0.00 3.86
426 427 1.071471 AACAGGGCGAGTCAACAGG 59.929 57.895 0.00 0.00 0.00 4.00
427 428 0.249868 TCAACAGGGCGAGTCAACAG 60.250 55.000 0.00 0.00 0.00 3.16
428 429 0.179234 TTCAACAGGGCGAGTCAACA 59.821 50.000 0.00 0.00 0.00 3.33
429 430 0.868406 CTTCAACAGGGCGAGTCAAC 59.132 55.000 0.00 0.00 0.00 3.18
430 431 0.468226 ACTTCAACAGGGCGAGTCAA 59.532 50.000 0.00 0.00 0.00 3.18
431 432 0.468226 AACTTCAACAGGGCGAGTCA 59.532 50.000 0.00 0.00 0.00 3.41
432 433 0.868406 CAACTTCAACAGGGCGAGTC 59.132 55.000 0.00 0.00 0.00 3.36
433 434 1.166531 GCAACTTCAACAGGGCGAGT 61.167 55.000 0.00 0.00 0.00 4.18
434 435 0.886490 AGCAACTTCAACAGGGCGAG 60.886 55.000 0.00 0.00 33.35 5.03
435 436 0.884704 GAGCAACTTCAACAGGGCGA 60.885 55.000 0.00 0.00 33.35 5.54
436 437 0.886490 AGAGCAACTTCAACAGGGCG 60.886 55.000 0.00 0.00 33.35 6.13
437 438 1.322442 AAGAGCAACTTCAACAGGGC 58.678 50.000 0.00 0.00 32.91 5.19
438 439 3.744660 AGTAAGAGCAACTTCAACAGGG 58.255 45.455 0.00 0.00 39.72 4.45
439 440 4.576463 ACAAGTAAGAGCAACTTCAACAGG 59.424 41.667 0.00 0.00 39.72 4.00
440 441 5.065218 ACACAAGTAAGAGCAACTTCAACAG 59.935 40.000 0.00 0.00 39.72 3.16
441 442 4.941263 ACACAAGTAAGAGCAACTTCAACA 59.059 37.500 0.00 0.00 39.72 3.33
442 443 5.266242 CACACAAGTAAGAGCAACTTCAAC 58.734 41.667 0.00 0.00 39.72 3.18
443 444 4.201910 GCACACAAGTAAGAGCAACTTCAA 60.202 41.667 0.00 0.00 39.72 2.69
444 445 3.312421 GCACACAAGTAAGAGCAACTTCA 59.688 43.478 0.00 0.00 39.72 3.02
445 446 3.304057 GGCACACAAGTAAGAGCAACTTC 60.304 47.826 0.00 0.00 39.72 3.01
446 447 2.618709 GGCACACAAGTAAGAGCAACTT 59.381 45.455 2.10 2.10 42.04 2.66
447 448 2.222027 GGCACACAAGTAAGAGCAACT 58.778 47.619 0.00 0.00 0.00 3.16
448 449 1.266989 GGGCACACAAGTAAGAGCAAC 59.733 52.381 0.00 0.00 0.00 4.17
449 450 1.604604 GGGCACACAAGTAAGAGCAA 58.395 50.000 0.00 0.00 0.00 3.91
450 451 0.602638 CGGGCACACAAGTAAGAGCA 60.603 55.000 0.00 0.00 0.00 4.26
451 452 1.912371 GCGGGCACACAAGTAAGAGC 61.912 60.000 0.00 0.00 0.00 4.09
452 453 0.602638 TGCGGGCACACAAGTAAGAG 60.603 55.000 0.00 0.00 0.00 2.85
453 454 0.179043 TTGCGGGCACACAAGTAAGA 60.179 50.000 0.00 0.00 0.00 2.10
454 455 0.881118 ATTGCGGGCACACAAGTAAG 59.119 50.000 0.00 0.00 29.83 2.34
455 456 0.595588 CATTGCGGGCACACAAGTAA 59.404 50.000 0.00 0.00 29.83 2.24
456 457 0.536233 ACATTGCGGGCACACAAGTA 60.536 50.000 0.00 0.00 29.83 2.24
457 458 1.827789 ACATTGCGGGCACACAAGT 60.828 52.632 0.00 0.00 29.83 3.16
458 459 1.372004 CACATTGCGGGCACACAAG 60.372 57.895 0.00 0.00 29.83 3.16
459 460 1.670949 AACACATTGCGGGCACACAA 61.671 50.000 0.00 0.00 0.00 3.33
460 461 1.670949 AAACACATTGCGGGCACACA 61.671 50.000 0.00 0.00 0.00 3.72
461 462 0.529555 AAAACACATTGCGGGCACAC 60.530 50.000 0.00 0.00 0.00 3.82
462 463 1.032794 TAAAACACATTGCGGGCACA 58.967 45.000 0.00 0.00 0.00 4.57
463 464 1.000717 AGTAAAACACATTGCGGGCAC 60.001 47.619 0.00 0.00 0.00 5.01
464 465 1.323412 AGTAAAACACATTGCGGGCA 58.677 45.000 0.00 0.00 0.00 5.36
465 466 2.287909 TGAAGTAAAACACATTGCGGGC 60.288 45.455 0.00 0.00 0.00 6.13
466 467 3.252215 TCTGAAGTAAAACACATTGCGGG 59.748 43.478 0.00 0.00 0.00 6.13
467 468 4.219033 GTCTGAAGTAAAACACATTGCGG 58.781 43.478 0.00 0.00 0.00 5.69
468 469 3.900116 CGTCTGAAGTAAAACACATTGCG 59.100 43.478 0.00 0.00 0.00 4.85
469 470 3.664025 GCGTCTGAAGTAAAACACATTGC 59.336 43.478 0.00 0.00 0.00 3.56
470 471 4.843147 TGCGTCTGAAGTAAAACACATTG 58.157 39.130 0.00 0.00 0.00 2.82
471 472 4.814234 TCTGCGTCTGAAGTAAAACACATT 59.186 37.500 0.00 0.00 0.00 2.71
472 473 4.377021 TCTGCGTCTGAAGTAAAACACAT 58.623 39.130 0.00 0.00 0.00 3.21
473 474 3.787785 TCTGCGTCTGAAGTAAAACACA 58.212 40.909 0.00 0.00 0.00 3.72
474 475 4.049186 TCTCTGCGTCTGAAGTAAAACAC 58.951 43.478 0.00 0.00 0.00 3.32
475 476 4.316205 TCTCTGCGTCTGAAGTAAAACA 57.684 40.909 0.00 0.00 0.00 2.83
476 477 4.434857 GCATCTCTGCGTCTGAAGTAAAAC 60.435 45.833 0.00 0.00 38.92 2.43
525 526 1.226575 GCTCCGGTAAAAATGGCGC 60.227 57.895 0.00 0.00 0.00 6.53
565 566 1.896220 TGCTGGTCAGATGTTTCCAC 58.104 50.000 1.65 0.00 0.00 4.02
566 567 2.224843 ACATGCTGGTCAGATGTTTCCA 60.225 45.455 1.65 0.00 30.56 3.53
569 570 3.441572 GCTAACATGCTGGTCAGATGTTT 59.558 43.478 21.57 12.90 38.65 2.83
577 578 2.393271 ACTCTGCTAACATGCTGGTC 57.607 50.000 0.00 0.00 33.58 4.02
590 591 8.398665 CAGGTCTATTTACCATTTTTACTCTGC 58.601 37.037 0.00 0.00 42.40 4.26
594 595 9.582648 AACACAGGTCTATTTACCATTTTTACT 57.417 29.630 0.00 0.00 42.40 2.24
604 605 9.169592 TGGCTTATTAAACACAGGTCTATTTAC 57.830 33.333 0.00 0.00 0.00 2.01
607 608 6.318900 GCTGGCTTATTAAACACAGGTCTATT 59.681 38.462 0.00 0.00 0.00 1.73
611 612 3.128764 GGCTGGCTTATTAAACACAGGTC 59.871 47.826 0.00 0.00 0.00 3.85
614 615 2.097466 CCGGCTGGCTTATTAAACACAG 59.903 50.000 0.00 0.00 0.00 3.66
649 654 1.349688 ACCTGCGGACAACCTTCATAA 59.650 47.619 0.00 0.00 0.00 1.90
650 655 0.981183 ACCTGCGGACAACCTTCATA 59.019 50.000 0.00 0.00 0.00 2.15
653 658 0.951040 CTCACCTGCGGACAACCTTC 60.951 60.000 0.00 0.00 0.00 3.46
658 663 0.541392 ATATGCTCACCTGCGGACAA 59.459 50.000 0.00 0.00 35.36 3.18
663 668 3.976793 AAATTCATATGCTCACCTGCG 57.023 42.857 0.00 0.00 35.36 5.18
665 670 9.976511 ATAAATGAAAATTCATATGCTCACCTG 57.023 29.630 8.94 0.00 46.60 4.00
715 743 2.838693 TGCAGGCAGGCAAGCAAA 60.839 55.556 11.06 0.00 41.65 3.68
744 802 2.633657 GAACACACGCTGCTGTGG 59.366 61.111 25.13 17.23 45.08 4.17
796 854 1.949525 TGTTTCTGGCTTGCTCTGTTC 59.050 47.619 0.00 0.00 0.00 3.18
805 863 2.158696 AGCTCTGTCTTGTTTCTGGCTT 60.159 45.455 0.00 0.00 0.00 4.35
807 865 1.803555 GAGCTCTGTCTTGTTTCTGGC 59.196 52.381 6.43 0.00 0.00 4.85
1032 1103 1.412361 CGGGAGAAGGAGAAGGAGGAT 60.412 57.143 0.00 0.00 0.00 3.24
1148 1219 1.141019 TCGTCCTCGGCATGCTTAC 59.859 57.895 18.92 7.85 37.69 2.34
1170 1244 1.003233 GAAAGCCAAGGACGCCTCT 60.003 57.895 0.00 0.00 30.89 3.69
1582 1719 2.186384 CTCCTCCAGCAGCTTCCG 59.814 66.667 0.00 0.00 0.00 4.30
1602 1739 2.973899 CAGTAGGCTCGCCACACT 59.026 61.111 11.02 9.74 38.92 3.55
1925 2073 6.333416 AGAAGAAGAAAAACAGTTCAAAGCC 58.667 36.000 0.00 0.00 0.00 4.35
1949 2097 9.050601 CATAAAAAGGGCTTCATAAAACACAAA 57.949 29.630 0.00 0.00 0.00 2.83
2123 2280 3.126171 TCGCATTTGGACATAGTTTTCGG 59.874 43.478 0.00 0.00 0.00 4.30
2130 2287 4.261322 CCTTGGATTCGCATTTGGACATAG 60.261 45.833 0.00 0.00 0.00 2.23
2136 2293 2.428171 ACATCCTTGGATTCGCATTTGG 59.572 45.455 0.00 0.00 0.00 3.28
2196 2353 2.616376 TGTGTCGAATTTTGACCACAGG 59.384 45.455 13.12 0.00 35.46 4.00
2199 2356 5.746245 TCATTTTGTGTCGAATTTTGACCAC 59.254 36.000 13.12 11.42 35.46 4.16
2222 2379 4.140536 CCTGATTTATTGGCCCTCTTCTC 58.859 47.826 0.00 0.00 0.00 2.87
2228 2385 2.852449 TCTGTCCTGATTTATTGGCCCT 59.148 45.455 0.00 0.00 0.00 5.19
2247 2404 2.262637 TCCGGTTTTCATACCACCTCT 58.737 47.619 0.00 0.00 38.12 3.69
2267 2424 7.989416 TTCGAGGAATGTTTACCTTACATTT 57.011 32.000 0.00 0.00 44.05 2.32
2272 2429 5.782047 TCGTTTCGAGGAATGTTTACCTTA 58.218 37.500 0.00 0.00 36.57 2.69
2275 2432 4.211794 TGTTCGTTTCGAGGAATGTTTACC 59.788 41.667 0.00 0.00 37.14 2.85
2319 2476 6.564125 CGTTTGAAGTTCTCATAACTGTGTCC 60.564 42.308 4.17 0.00 32.78 4.02
2325 2482 5.177696 GCAGACGTTTGAAGTTCTCATAACT 59.822 40.000 10.75 0.00 32.78 2.24
2337 2494 5.529430 TCAAAAATAGGAGCAGACGTTTGAA 59.471 36.000 10.75 0.00 32.45 2.69
2364 2521 5.285651 TGCTGTTATTGTAAGTGTTTTGGC 58.714 37.500 0.00 0.00 0.00 4.52
2377 2534 9.326339 CATCGAAGATTTGATATGCTGTTATTG 57.674 33.333 0.00 0.00 45.12 1.90
2383 2540 6.782298 ACTCATCGAAGATTTGATATGCTG 57.218 37.500 0.00 0.00 45.12 4.41
2409 2566 5.820131 TGAATTAGTGCCGCATTTGAATAG 58.180 37.500 0.00 0.00 0.00 1.73
2511 2668 2.822701 GGGCGCTTAAAGGGGACG 60.823 66.667 7.64 0.00 0.00 4.79
2601 2758 4.485163 CGCTTAAAGGGGACAATGAAAAG 58.515 43.478 0.00 0.00 0.00 2.27
2697 2859 3.635373 ACACCTCTAGACACGAGAAAACA 59.365 43.478 0.00 0.00 0.00 2.83
2705 2867 3.056821 TGATCCAAACACCTCTAGACACG 60.057 47.826 0.00 0.00 0.00 4.49
2742 2905 2.226330 CGTGTTTGGTCCCTTTCATCA 58.774 47.619 0.00 0.00 0.00 3.07
2783 2946 5.674525 TCCCAAATGCATAAGTCTAGTCTG 58.325 41.667 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.