Multiple sequence alignment - TraesCS3B01G260400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G260400 chr3B 100.000 2304 0 0 1 2304 418066003 418063700 0.000000e+00 4255.0
1 TraesCS3B01G260400 chr3B 96.356 247 9 0 2053 2299 741306241 741306487 7.660000e-110 407.0
2 TraesCS3B01G260400 chr3B 91.803 122 8 2 74 194 817865346 817865466 3.940000e-38 169.0
3 TraesCS3B01G260400 chr3B 80.606 165 21 3 235 399 107136539 107136692 1.450000e-22 117.0
4 TraesCS3B01G260400 chr3A 93.570 1524 47 16 453 1946 431128892 431127390 0.000000e+00 2224.0
5 TraesCS3B01G260400 chr3A 96.262 107 4 0 1949 2055 431127344 431127238 2.350000e-40 176.0
6 TraesCS3B01G260400 chr3A 82.514 183 19 4 218 399 397628834 397628664 5.130000e-32 148.0
7 TraesCS3B01G260400 chr3D 91.612 1228 55 18 499 1700 303397148 303398353 0.000000e+00 1653.0
8 TraesCS3B01G260400 chr3D 96.032 252 10 0 2053 2304 134500070 134499819 5.920000e-111 411.0
9 TraesCS3B01G260400 chr7D 96.825 252 8 0 2053 2304 545395649 545395900 2.740000e-114 422.0
10 TraesCS3B01G260400 chr7D 95.635 252 11 0 2053 2304 310993694 310993443 2.760000e-109 405.0
11 TraesCS3B01G260400 chr7D 95.238 252 12 0 2053 2304 451195152 451194901 1.280000e-107 399.0
12 TraesCS3B01G260400 chr7D 86.061 165 13 4 235 399 206669304 206669458 3.940000e-38 169.0
13 TraesCS3B01G260400 chr2B 96.825 252 8 0 2053 2304 26464627 26464878 2.740000e-114 422.0
14 TraesCS3B01G260400 chr2B 85.629 167 14 1 233 399 655409366 655409522 1.420000e-37 167.0
15 TraesCS3B01G260400 chr2B 91.379 116 9 1 74 188 723434233 723434348 8.520000e-35 158.0
16 TraesCS3B01G260400 chr4D 96.032 252 10 0 2053 2304 479965928 479966179 5.920000e-111 411.0
17 TraesCS3B01G260400 chr6D 94.574 258 14 0 2047 2304 76002105 76002362 1.280000e-107 399.0
18 TraesCS3B01G260400 chr6D 83.616 177 14 7 226 399 439684689 439684853 3.960000e-33 152.0
19 TraesCS3B01G260400 chr2D 94.574 258 14 0 2047 2304 392699157 392699414 1.280000e-107 399.0
20 TraesCS3B01G260400 chr2D 94.565 92 5 0 307 398 235074561 235074470 2.390000e-30 143.0
21 TraesCS3B01G260400 chr5D 87.500 160 18 2 234 393 92532580 92532737 1.410000e-42 183.0
22 TraesCS3B01G260400 chr5D 84.848 165 15 4 235 399 449670438 449670284 8.520000e-35 158.0
23 TraesCS3B01G260400 chr5D 84.242 165 15 2 235 399 451492510 451492663 1.430000e-32 150.0
24 TraesCS3B01G260400 chr5D 83.735 166 17 2 234 399 457514710 457514555 5.130000e-32 148.0
25 TraesCS3B01G260400 chr5D 81.250 112 14 7 289 398 315204679 315204785 1.470000e-12 84.2
26 TraesCS3B01G260400 chr5B 86.782 174 11 6 227 399 486081485 486081647 1.410000e-42 183.0
27 TraesCS3B01G260400 chr7B 93.277 119 7 1 71 188 62482896 62482778 8.460000e-40 174.0
28 TraesCS3B01G260400 chr7B 91.057 123 9 2 74 195 702460660 702460539 5.090000e-37 165.0
29 TraesCS3B01G260400 chr7B 82.143 112 13 7 230 336 592013521 592013630 3.150000e-14 89.8
30 TraesCS3B01G260400 chrUn 91.803 122 8 2 74 194 42660407 42660287 3.940000e-38 169.0
31 TraesCS3B01G260400 chrUn 91.803 122 8 2 74 194 350286537 350286417 3.940000e-38 169.0
32 TraesCS3B01G260400 chrUn 85.455 165 14 4 235 399 358753915 358754069 1.830000e-36 163.0
33 TraesCS3B01G260400 chr4B 93.103 116 7 1 74 188 576391998 576392113 3.940000e-38 169.0
34 TraesCS3B01G260400 chr4B 90.625 128 9 3 74 199 97922027 97922153 1.420000e-37 167.0
35 TraesCS3B01G260400 chr1B 86.061 165 13 3 235 399 487415529 487415683 3.940000e-38 169.0
36 TraesCS3B01G260400 chr4A 91.057 123 9 2 74 195 702148793 702148914 5.090000e-37 165.0
37 TraesCS3B01G260400 chr4A 82.456 114 14 5 289 399 534163444 534163334 6.780000e-16 95.3
38 TraesCS3B01G260400 chr2A 85.455 165 14 4 235 399 423902424 423902270 1.830000e-36 163.0
39 TraesCS3B01G260400 chr5A 82.383 193 21 3 209 399 452111572 452111753 3.060000e-34 156.0
40 TraesCS3B01G260400 chr5A 83.636 165 17 1 235 399 321049721 321049875 1.840000e-31 147.0
41 TraesCS3B01G260400 chr5A 88.710 62 4 2 289 348 409323035 409323095 3.180000e-09 73.1
42 TraesCS3B01G260400 chr1D 100.000 29 0 0 414 442 208240327 208240355 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G260400 chr3B 418063700 418066003 2303 True 4255 4255 100.000 1 2304 1 chr3B.!!$R1 2303
1 TraesCS3B01G260400 chr3A 431127238 431128892 1654 True 1200 2224 94.916 453 2055 2 chr3A.!!$R2 1602
2 TraesCS3B01G260400 chr3D 303397148 303398353 1205 False 1653 1653 91.612 499 1700 1 chr3D.!!$F1 1201

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 189 0.249398 ATTTCCGAACGGAGGGAGTG 59.751 55.0 15.34 0.0 46.06 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2065 2140 0.179 ACATGGCCGACTGAAGATCC 59.821 55.0 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.091910 GTCCCTCAACAAAAAGAAGTACG 57.908 43.478 0.00 0.00 0.00 3.67
23 24 4.812626 GTCCCTCAACAAAAAGAAGTACGA 59.187 41.667 0.00 0.00 0.00 3.43
24 25 5.295045 GTCCCTCAACAAAAAGAAGTACGAA 59.705 40.000 0.00 0.00 0.00 3.85
25 26 5.881443 TCCCTCAACAAAAAGAAGTACGAAA 59.119 36.000 0.00 0.00 0.00 3.46
26 27 5.969435 CCCTCAACAAAAAGAAGTACGAAAC 59.031 40.000 0.00 0.00 0.00 2.78
27 28 6.403855 CCCTCAACAAAAAGAAGTACGAAACA 60.404 38.462 0.00 0.00 0.00 2.83
28 29 7.024768 CCTCAACAAAAAGAAGTACGAAACAA 58.975 34.615 0.00 0.00 0.00 2.83
29 30 7.539366 CCTCAACAAAAAGAAGTACGAAACAAA 59.461 33.333 0.00 0.00 0.00 2.83
30 31 8.442605 TCAACAAAAAGAAGTACGAAACAAAG 57.557 30.769 0.00 0.00 0.00 2.77
31 32 7.539366 TCAACAAAAAGAAGTACGAAACAAAGG 59.461 33.333 0.00 0.00 0.00 3.11
32 33 5.803461 ACAAAAAGAAGTACGAAACAAAGGC 59.197 36.000 0.00 0.00 0.00 4.35
33 34 5.570234 AAAAGAAGTACGAAACAAAGGCA 57.430 34.783 0.00 0.00 0.00 4.75
34 35 4.547406 AAGAAGTACGAAACAAAGGCAC 57.453 40.909 0.00 0.00 0.00 5.01
52 53 6.115448 AGGCACTTACTGATACAATATCCC 57.885 41.667 0.00 0.00 27.25 3.85
53 54 5.606749 AGGCACTTACTGATACAATATCCCA 59.393 40.000 0.00 0.00 27.25 4.37
54 55 6.101150 AGGCACTTACTGATACAATATCCCAA 59.899 38.462 0.00 0.00 27.25 4.12
55 56 6.770785 GGCACTTACTGATACAATATCCCAAA 59.229 38.462 0.00 0.00 0.00 3.28
56 57 7.284489 GGCACTTACTGATACAATATCCCAAAA 59.716 37.037 0.00 0.00 0.00 2.44
57 58 8.682710 GCACTTACTGATACAATATCCCAAAAA 58.317 33.333 0.00 0.00 0.00 1.94
59 60 9.975218 ACTTACTGATACAATATCCCAAAAACT 57.025 29.630 0.00 0.00 0.00 2.66
63 64 9.614792 ACTGATACAATATCCCAAAAACTACTC 57.385 33.333 0.00 0.00 0.00 2.59
64 65 8.974060 TGATACAATATCCCAAAAACTACTCC 57.026 34.615 0.00 0.00 0.00 3.85
65 66 7.996644 TGATACAATATCCCAAAAACTACTCCC 59.003 37.037 0.00 0.00 0.00 4.30
66 67 6.402981 ACAATATCCCAAAAACTACTCCCT 57.597 37.500 0.00 0.00 0.00 4.20
67 68 6.424032 ACAATATCCCAAAAACTACTCCCTC 58.576 40.000 0.00 0.00 0.00 4.30
68 69 5.648330 ATATCCCAAAAACTACTCCCTCC 57.352 43.478 0.00 0.00 0.00 4.30
69 70 1.626825 TCCCAAAAACTACTCCCTCCG 59.373 52.381 0.00 0.00 0.00 4.63
70 71 1.350019 CCCAAAAACTACTCCCTCCGT 59.650 52.381 0.00 0.00 0.00 4.69
71 72 2.614734 CCCAAAAACTACTCCCTCCGTC 60.615 54.545 0.00 0.00 0.00 4.79
72 73 2.614734 CCAAAAACTACTCCCTCCGTCC 60.615 54.545 0.00 0.00 0.00 4.79
73 74 2.302157 CAAAAACTACTCCCTCCGTCCT 59.698 50.000 0.00 0.00 0.00 3.85
74 75 3.463048 AAAACTACTCCCTCCGTCCTA 57.537 47.619 0.00 0.00 0.00 2.94
75 76 2.433662 AACTACTCCCTCCGTCCTAC 57.566 55.000 0.00 0.00 0.00 3.18
76 77 1.594129 ACTACTCCCTCCGTCCTACT 58.406 55.000 0.00 0.00 0.00 2.57
77 78 1.490069 ACTACTCCCTCCGTCCTACTC 59.510 57.143 0.00 0.00 0.00 2.59
78 79 0.842635 TACTCCCTCCGTCCTACTCC 59.157 60.000 0.00 0.00 0.00 3.85
79 80 1.152715 CTCCCTCCGTCCTACTCCC 60.153 68.421 0.00 0.00 0.00 4.30
80 81 1.621822 TCCCTCCGTCCTACTCCCT 60.622 63.158 0.00 0.00 0.00 4.20
81 82 1.152715 CCCTCCGTCCTACTCCCTC 60.153 68.421 0.00 0.00 0.00 4.30
82 83 1.152715 CCTCCGTCCTACTCCCTCC 60.153 68.421 0.00 0.00 0.00 4.30
83 84 1.526455 CTCCGTCCTACTCCCTCCG 60.526 68.421 0.00 0.00 0.00 4.63
84 85 2.268167 CTCCGTCCTACTCCCTCCGT 62.268 65.000 0.00 0.00 0.00 4.69
85 86 1.823041 CCGTCCTACTCCCTCCGTC 60.823 68.421 0.00 0.00 0.00 4.79
86 87 1.823041 CGTCCTACTCCCTCCGTCC 60.823 68.421 0.00 0.00 0.00 4.79
87 88 1.823041 GTCCTACTCCCTCCGTCCG 60.823 68.421 0.00 0.00 0.00 4.79
88 89 1.997311 TCCTACTCCCTCCGTCCGA 60.997 63.158 0.00 0.00 0.00 4.55
89 90 1.077212 CCTACTCCCTCCGTCCGAA 60.077 63.158 0.00 0.00 0.00 4.30
90 91 0.682209 CCTACTCCCTCCGTCCGAAA 60.682 60.000 0.00 0.00 0.00 3.46
91 92 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
92 93 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
93 94 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
94 95 2.395619 ACTCCCTCCGTCCGAAAATAT 58.604 47.619 0.00 0.00 0.00 1.28
95 96 2.770232 ACTCCCTCCGTCCGAAAATATT 59.230 45.455 0.00 0.00 0.00 1.28
96 97 3.199289 ACTCCCTCCGTCCGAAAATATTT 59.801 43.478 0.00 0.00 0.00 1.40
97 98 3.537580 TCCCTCCGTCCGAAAATATTTG 58.462 45.455 0.39 0.00 0.00 2.32
98 99 3.054948 TCCCTCCGTCCGAAAATATTTGT 60.055 43.478 0.39 0.00 0.00 2.83
99 100 3.311596 CCCTCCGTCCGAAAATATTTGTC 59.688 47.826 0.39 1.54 0.00 3.18
100 101 3.936453 CCTCCGTCCGAAAATATTTGTCA 59.064 43.478 0.39 0.00 0.00 3.58
101 102 4.393680 CCTCCGTCCGAAAATATTTGTCAA 59.606 41.667 0.39 0.00 0.00 3.18
102 103 5.106475 CCTCCGTCCGAAAATATTTGTCAAA 60.106 40.000 0.39 0.00 0.00 2.69
103 104 6.315091 TCCGTCCGAAAATATTTGTCAAAA 57.685 33.333 0.39 0.00 0.00 2.44
104 105 6.375377 TCCGTCCGAAAATATTTGTCAAAAG 58.625 36.000 0.39 0.00 0.00 2.27
105 106 6.205076 TCCGTCCGAAAATATTTGTCAAAAGA 59.795 34.615 0.39 0.00 0.00 2.52
106 107 6.858993 CCGTCCGAAAATATTTGTCAAAAGAA 59.141 34.615 0.39 0.00 0.00 2.52
107 108 7.540745 CCGTCCGAAAATATTTGTCAAAAGAAT 59.459 33.333 0.39 0.00 0.00 2.40
108 109 8.365210 CGTCCGAAAATATTTGTCAAAAGAATG 58.635 33.333 0.39 0.00 0.00 2.67
109 110 9.405587 GTCCGAAAATATTTGTCAAAAGAATGA 57.594 29.630 0.39 0.00 0.00 2.57
110 111 9.973450 TCCGAAAATATTTGTCAAAAGAATGAA 57.027 25.926 0.39 0.00 0.00 2.57
122 123 9.087424 TGTCAAAAGAATGAATGTATCTAGACG 57.913 33.333 0.00 0.00 0.00 4.18
123 124 9.088512 GTCAAAAGAATGAATGTATCTAGACGT 57.911 33.333 0.00 0.00 0.00 4.34
162 163 9.546909 GATACATCCATTTTATGCATTTCTACG 57.453 33.333 3.54 0.00 0.00 3.51
163 164 7.566760 ACATCCATTTTATGCATTTCTACGA 57.433 32.000 3.54 0.00 0.00 3.43
164 165 7.417612 ACATCCATTTTATGCATTTCTACGAC 58.582 34.615 3.54 0.00 0.00 4.34
165 166 6.993786 TCCATTTTATGCATTTCTACGACA 57.006 33.333 3.54 0.00 0.00 4.35
166 167 7.384439 TCCATTTTATGCATTTCTACGACAA 57.616 32.000 3.54 0.00 0.00 3.18
167 168 7.471721 TCCATTTTATGCATTTCTACGACAAG 58.528 34.615 3.54 0.00 0.00 3.16
168 169 7.120579 TCCATTTTATGCATTTCTACGACAAGT 59.879 33.333 3.54 0.00 0.00 3.16
169 170 8.394877 CCATTTTATGCATTTCTACGACAAGTA 58.605 33.333 3.54 0.00 0.00 2.24
170 171 9.935682 CATTTTATGCATTTCTACGACAAGTAT 57.064 29.630 3.54 0.00 34.34 2.12
173 174 9.982291 TTTATGCATTTCTACGACAAGTATTTC 57.018 29.630 3.54 0.00 34.34 2.17
174 175 6.417191 TGCATTTCTACGACAAGTATTTCC 57.583 37.500 0.00 0.00 34.34 3.13
175 176 5.062934 TGCATTTCTACGACAAGTATTTCCG 59.937 40.000 0.00 0.00 34.34 4.30
176 177 5.290158 GCATTTCTACGACAAGTATTTCCGA 59.710 40.000 0.00 0.00 34.34 4.55
177 178 6.183360 GCATTTCTACGACAAGTATTTCCGAA 60.183 38.462 0.00 0.00 34.34 4.30
178 179 6.695292 TTTCTACGACAAGTATTTCCGAAC 57.305 37.500 0.00 0.00 34.34 3.95
179 180 4.406069 TCTACGACAAGTATTTCCGAACG 58.594 43.478 0.00 0.00 34.34 3.95
180 181 2.331194 ACGACAAGTATTTCCGAACGG 58.669 47.619 6.94 6.94 0.00 4.44
181 182 2.030007 ACGACAAGTATTTCCGAACGGA 60.030 45.455 12.04 12.04 43.52 4.69
182 183 2.597305 CGACAAGTATTTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
183 184 2.928116 GACAAGTATTTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
184 185 2.277084 CAAGTATTTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
185 186 1.856629 AGTATTTCCGAACGGAGGGA 58.143 50.000 15.34 7.17 46.06 4.20
186 187 1.755380 AGTATTTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
187 188 1.479730 GTATTTCCGAACGGAGGGAGT 59.520 52.381 15.34 1.96 46.06 3.85
188 189 0.249398 ATTTCCGAACGGAGGGAGTG 59.751 55.000 15.34 0.00 46.06 3.51
189 190 0.828762 TTTCCGAACGGAGGGAGTGA 60.829 55.000 15.34 0.00 46.06 3.41
190 191 1.248785 TTCCGAACGGAGGGAGTGAG 61.249 60.000 15.34 0.00 46.06 3.51
191 192 1.977544 CCGAACGGAGGGAGTGAGT 60.978 63.158 7.53 0.00 37.50 3.41
192 193 0.679002 CCGAACGGAGGGAGTGAGTA 60.679 60.000 7.53 0.00 37.50 2.59
193 194 1.390565 CGAACGGAGGGAGTGAGTAT 58.609 55.000 0.00 0.00 0.00 2.12
194 195 2.569059 CGAACGGAGGGAGTGAGTATA 58.431 52.381 0.00 0.00 0.00 1.47
195 196 2.947652 CGAACGGAGGGAGTGAGTATAA 59.052 50.000 0.00 0.00 0.00 0.98
196 197 3.568853 CGAACGGAGGGAGTGAGTATAAT 59.431 47.826 0.00 0.00 0.00 1.28
197 198 4.037684 CGAACGGAGGGAGTGAGTATAATT 59.962 45.833 0.00 0.00 0.00 1.40
198 199 5.451520 CGAACGGAGGGAGTGAGTATAATTT 60.452 44.000 0.00 0.00 0.00 1.82
199 200 6.238842 CGAACGGAGGGAGTGAGTATAATTTA 60.239 42.308 0.00 0.00 0.00 1.40
200 201 7.427989 AACGGAGGGAGTGAGTATAATTTAA 57.572 36.000 0.00 0.00 0.00 1.52
201 202 7.052142 ACGGAGGGAGTGAGTATAATTTAAG 57.948 40.000 0.00 0.00 0.00 1.85
202 203 6.837568 ACGGAGGGAGTGAGTATAATTTAAGA 59.162 38.462 0.00 0.00 0.00 2.10
203 204 7.146648 CGGAGGGAGTGAGTATAATTTAAGAC 58.853 42.308 0.00 0.00 0.00 3.01
204 205 7.146648 GGAGGGAGTGAGTATAATTTAAGACG 58.853 42.308 0.00 0.00 0.00 4.18
205 206 7.201893 GGAGGGAGTGAGTATAATTTAAGACGT 60.202 40.741 0.00 0.00 0.00 4.34
206 207 8.757982 AGGGAGTGAGTATAATTTAAGACGTA 57.242 34.615 0.00 0.00 0.00 3.57
207 208 9.193806 AGGGAGTGAGTATAATTTAAGACGTAA 57.806 33.333 0.00 0.00 0.00 3.18
208 209 9.978044 GGGAGTGAGTATAATTTAAGACGTAAT 57.022 33.333 0.00 0.00 0.00 1.89
211 212 9.760077 AGTGAGTATAATTTAAGACGTAATGGG 57.240 33.333 0.00 0.00 0.00 4.00
212 213 9.754382 GTGAGTATAATTTAAGACGTAATGGGA 57.246 33.333 0.00 0.00 0.00 4.37
213 214 9.754382 TGAGTATAATTTAAGACGTAATGGGAC 57.246 33.333 0.00 0.00 0.00 4.46
220 221 3.944123 CGTAATGGGACGGAGGGA 58.056 61.111 0.00 0.00 39.19 4.20
221 222 1.740285 CGTAATGGGACGGAGGGAG 59.260 63.158 0.00 0.00 39.19 4.30
222 223 1.041447 CGTAATGGGACGGAGGGAGT 61.041 60.000 0.00 0.00 39.19 3.85
223 224 1.751733 CGTAATGGGACGGAGGGAGTA 60.752 57.143 0.00 0.00 39.19 2.59
224 225 2.606378 GTAATGGGACGGAGGGAGTAT 58.394 52.381 0.00 0.00 0.00 2.12
225 226 1.424638 AATGGGACGGAGGGAGTATG 58.575 55.000 0.00 0.00 0.00 2.39
226 227 0.561184 ATGGGACGGAGGGAGTATGA 59.439 55.000 0.00 0.00 0.00 2.15
227 228 0.337082 TGGGACGGAGGGAGTATGAA 59.663 55.000 0.00 0.00 0.00 2.57
228 229 1.273381 TGGGACGGAGGGAGTATGAAA 60.273 52.381 0.00 0.00 0.00 2.69
229 230 1.138464 GGGACGGAGGGAGTATGAAAC 59.862 57.143 0.00 0.00 0.00 2.78
230 231 1.829222 GGACGGAGGGAGTATGAAACA 59.171 52.381 0.00 0.00 0.00 2.83
231 232 2.159085 GGACGGAGGGAGTATGAAACAG 60.159 54.545 0.00 0.00 0.00 3.16
232 233 2.758979 GACGGAGGGAGTATGAAACAGA 59.241 50.000 0.00 0.00 0.00 3.41
233 234 2.761208 ACGGAGGGAGTATGAAACAGAG 59.239 50.000 0.00 0.00 0.00 3.35
234 235 2.761208 CGGAGGGAGTATGAAACAGAGT 59.239 50.000 0.00 0.00 0.00 3.24
235 236 3.952323 CGGAGGGAGTATGAAACAGAGTA 59.048 47.826 0.00 0.00 0.00 2.59
236 237 4.202030 CGGAGGGAGTATGAAACAGAGTAC 60.202 50.000 0.00 0.00 0.00 2.73
237 238 4.957327 GGAGGGAGTATGAAACAGAGTACT 59.043 45.833 0.00 0.00 0.00 2.73
238 239 5.068067 GGAGGGAGTATGAAACAGAGTACTC 59.932 48.000 15.41 15.41 41.30 2.59
239 240 5.833340 AGGGAGTATGAAACAGAGTACTCT 58.167 41.667 20.00 20.00 41.58 3.24
240 241 5.889289 AGGGAGTATGAAACAGAGTACTCTC 59.111 44.000 22.76 12.20 42.36 3.20
242 243 6.038936 GGGAGTATGAAACAGAGTACTCTCTC 59.961 46.154 22.76 20.30 46.84 3.20
243 244 6.038936 GGAGTATGAAACAGAGTACTCTCTCC 59.961 46.154 25.38 25.38 46.84 3.71
244 245 6.486056 AGTATGAAACAGAGTACTCTCTCCA 58.514 40.000 22.76 16.88 46.84 3.86
245 246 7.122715 AGTATGAAACAGAGTACTCTCTCCAT 58.877 38.462 22.76 21.47 46.84 3.41
246 247 6.865834 ATGAAACAGAGTACTCTCTCCATT 57.134 37.500 22.76 12.50 46.84 3.16
247 248 6.274157 TGAAACAGAGTACTCTCTCCATTC 57.726 41.667 22.76 19.33 46.84 2.67
248 249 5.186021 TGAAACAGAGTACTCTCTCCATTCC 59.814 44.000 22.76 7.39 46.84 3.01
249 250 4.601406 ACAGAGTACTCTCTCCATTCCT 57.399 45.455 22.76 0.00 46.84 3.36
250 251 5.718801 ACAGAGTACTCTCTCCATTCCTA 57.281 43.478 22.76 0.00 46.84 2.94
251 252 6.080969 ACAGAGTACTCTCTCCATTCCTAA 57.919 41.667 22.76 0.00 46.84 2.69
252 253 6.494952 ACAGAGTACTCTCTCCATTCCTAAA 58.505 40.000 22.76 0.00 46.84 1.85
253 254 7.129425 ACAGAGTACTCTCTCCATTCCTAAAT 58.871 38.462 22.76 0.00 46.84 1.40
254 255 8.282982 ACAGAGTACTCTCTCCATTCCTAAATA 58.717 37.037 22.76 0.00 46.84 1.40
255 256 9.308000 CAGAGTACTCTCTCCATTCCTAAATAT 57.692 37.037 22.76 0.00 46.84 1.28
256 257 9.890915 AGAGTACTCTCTCCATTCCTAAATATT 57.109 33.333 20.00 0.00 46.84 1.28
261 262 8.997734 ACTCTCTCCATTCCTAAATATTTGTCT 58.002 33.333 11.05 0.00 0.00 3.41
262 263 9.844257 CTCTCTCCATTCCTAAATATTTGTCTT 57.156 33.333 11.05 0.00 0.00 3.01
283 284 8.786898 TGTCTTTCTAGAGATTTCAACAAATGG 58.213 33.333 0.00 0.00 31.94 3.16
284 285 7.752686 GTCTTTCTAGAGATTTCAACAAATGGC 59.247 37.037 0.00 0.00 31.94 4.40
285 286 7.667219 TCTTTCTAGAGATTTCAACAAATGGCT 59.333 33.333 0.00 0.00 31.94 4.75
286 287 8.862325 TTTCTAGAGATTTCAACAAATGGCTA 57.138 30.769 0.00 0.00 31.94 3.93
287 288 7.849804 TCTAGAGATTTCAACAAATGGCTAC 57.150 36.000 0.00 0.00 31.94 3.58
288 289 7.394016 TCTAGAGATTTCAACAAATGGCTACA 58.606 34.615 0.00 0.00 31.94 2.74
289 290 8.049117 TCTAGAGATTTCAACAAATGGCTACAT 58.951 33.333 0.00 0.00 39.54 2.29
290 291 9.330063 CTAGAGATTTCAACAAATGGCTACATA 57.670 33.333 0.00 0.00 35.94 2.29
291 292 7.989826 AGAGATTTCAACAAATGGCTACATAC 58.010 34.615 0.00 0.00 35.94 2.39
292 293 7.611467 AGAGATTTCAACAAATGGCTACATACA 59.389 33.333 0.00 0.00 35.94 2.29
293 294 8.121305 AGATTTCAACAAATGGCTACATACAA 57.879 30.769 0.00 0.00 35.94 2.41
294 295 8.584157 AGATTTCAACAAATGGCTACATACAAA 58.416 29.630 0.00 0.00 35.94 2.83
295 296 9.202273 GATTTCAACAAATGGCTACATACAAAA 57.798 29.630 0.00 0.00 35.94 2.44
296 297 7.938563 TTCAACAAATGGCTACATACAAAAC 57.061 32.000 0.00 0.00 35.94 2.43
297 298 7.043961 TCAACAAATGGCTACATACAAAACA 57.956 32.000 0.00 0.00 35.94 2.83
298 299 7.492524 TCAACAAATGGCTACATACAAAACAA 58.507 30.769 0.00 0.00 35.94 2.83
299 300 7.981789 TCAACAAATGGCTACATACAAAACAAA 59.018 29.630 0.00 0.00 35.94 2.83
300 301 8.607459 CAACAAATGGCTACATACAAAACAAAA 58.393 29.630 0.00 0.00 35.94 2.44
301 302 8.900983 ACAAATGGCTACATACAAAACAAAAT 57.099 26.923 0.00 0.00 35.94 1.82
302 303 9.988815 ACAAATGGCTACATACAAAACAAAATA 57.011 25.926 0.00 0.00 35.94 1.40
307 308 9.817809 TGGCTACATACAAAACAAAATAAAACA 57.182 25.926 0.00 0.00 0.00 2.83
369 370 9.429109 TTCATAGGTATGTGGTAGTCTATTTGA 57.571 33.333 0.00 0.00 35.26 2.69
370 371 9.429109 TCATAGGTATGTGGTAGTCTATTTGAA 57.571 33.333 0.00 0.00 35.26 2.69
374 375 8.993424 AGGTATGTGGTAGTCTATTTGAAATCT 58.007 33.333 0.00 0.00 0.00 2.40
375 376 9.262358 GGTATGTGGTAGTCTATTTGAAATCTC 57.738 37.037 0.00 0.00 0.00 2.75
428 429 9.289782 TCCGTCTAATATTTAGTAACTACTCCC 57.710 37.037 0.00 0.00 37.73 4.30
429 430 9.294614 CCGTCTAATATTTAGTAACTACTCCCT 57.705 37.037 0.00 0.00 37.73 4.20
432 433 9.512588 TCTAATATTTAGTAACTACTCCCTCCG 57.487 37.037 0.00 0.00 37.73 4.63
433 434 9.294614 CTAATATTTAGTAACTACTCCCTCCGT 57.705 37.037 0.00 0.00 37.73 4.69
434 435 7.757941 ATATTTAGTAACTACTCCCTCCGTC 57.242 40.000 0.00 0.00 37.73 4.79
435 436 2.433662 AGTAACTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
436 437 1.921748 AGTAACTACTCCCTCCGTCCT 59.078 52.381 0.00 0.00 0.00 3.85
437 438 3.118531 AGTAACTACTCCCTCCGTCCTA 58.881 50.000 0.00 0.00 0.00 2.94
438 439 3.721050 AGTAACTACTCCCTCCGTCCTAT 59.279 47.826 0.00 0.00 0.00 2.57
439 440 4.910304 AGTAACTACTCCCTCCGTCCTATA 59.090 45.833 0.00 0.00 0.00 1.31
440 441 4.803329 AACTACTCCCTCCGTCCTATAA 57.197 45.455 0.00 0.00 0.00 0.98
441 442 5.336491 AACTACTCCCTCCGTCCTATAAT 57.664 43.478 0.00 0.00 0.00 1.28
442 443 5.336491 ACTACTCCCTCCGTCCTATAATT 57.664 43.478 0.00 0.00 0.00 1.40
443 444 5.713807 ACTACTCCCTCCGTCCTATAATTT 58.286 41.667 0.00 0.00 0.00 1.82
444 445 6.856757 ACTACTCCCTCCGTCCTATAATTTA 58.143 40.000 0.00 0.00 0.00 1.40
445 446 6.947158 ACTACTCCCTCCGTCCTATAATTTAG 59.053 42.308 0.00 0.00 0.00 1.85
446 447 5.085219 ACTCCCTCCGTCCTATAATTTAGG 58.915 45.833 7.15 7.15 36.06 2.69
447 448 5.162903 ACTCCCTCCGTCCTATAATTTAGGA 60.163 44.000 10.55 10.55 41.14 2.94
468 469 1.201424 GTAATGGGACGGAGGGAGTT 58.799 55.000 0.00 0.00 0.00 3.01
469 470 1.558294 GTAATGGGACGGAGGGAGTTT 59.442 52.381 0.00 0.00 0.00 2.66
476 477 2.567985 GACGGAGGGAGTTTGAAACAA 58.432 47.619 11.02 0.00 0.00 2.83
482 483 5.131067 GGAGGGAGTTTGAAACAAAGTACT 58.869 41.667 11.02 9.84 0.00 2.73
483 484 5.008712 GGAGGGAGTTTGAAACAAAGTACTG 59.991 44.000 11.02 0.00 0.00 2.74
484 485 5.506708 AGGGAGTTTGAAACAAAGTACTGT 58.493 37.500 11.02 0.00 0.00 3.55
485 486 6.655930 AGGGAGTTTGAAACAAAGTACTGTA 58.344 36.000 11.02 0.00 0.00 2.74
488 489 7.148205 GGGAGTTTGAAACAAAGTACTGTACAA 60.148 37.037 19.27 0.54 0.00 2.41
489 490 7.908601 GGAGTTTGAAACAAAGTACTGTACAAG 59.091 37.037 19.27 10.80 31.92 3.16
490 491 8.556213 AGTTTGAAACAAAGTACTGTACAAGA 57.444 30.769 19.27 0.00 31.92 3.02
491 492 8.448615 AGTTTGAAACAAAGTACTGTACAAGAC 58.551 33.333 19.27 0.00 31.92 3.01
492 493 7.908827 TTGAAACAAAGTACTGTACAAGACA 57.091 32.000 19.27 7.61 36.35 3.41
494 495 6.314400 TGAAACAAAGTACTGTACAAGACACC 59.686 38.462 19.27 5.16 33.31 4.16
496 497 4.407945 ACAAAGTACTGTACAAGACACCCT 59.592 41.667 19.27 0.00 33.31 4.34
497 498 5.104652 ACAAAGTACTGTACAAGACACCCTT 60.105 40.000 19.27 0.00 33.31 3.95
511 513 1.682854 CACCCTTGACACATGCAACTT 59.317 47.619 0.00 0.00 0.00 2.66
598 600 1.369625 GCAACACAAGCTATAGCCGT 58.630 50.000 21.17 15.52 43.38 5.68
760 783 0.673644 CCGGTAAGTTGCACCTCCTG 60.674 60.000 0.00 0.00 33.62 3.86
840 864 8.461222 CAATCACTTGCTACAATAATTCAGGAA 58.539 33.333 0.00 0.00 0.00 3.36
959 983 2.533318 AGCACACGACAGCTTAAGC 58.467 52.632 20.09 20.09 38.01 3.09
1195 1219 0.952497 ACAACCTGCAGCTGATGTCG 60.952 55.000 20.43 2.31 0.00 4.35
1243 1267 2.092049 TGCATGCTCTTTCCCTGATGAT 60.092 45.455 20.33 0.00 0.00 2.45
1244 1268 2.553172 GCATGCTCTTTCCCTGATGATC 59.447 50.000 11.37 0.00 0.00 2.92
1434 1462 2.588877 GGCGCTGACAGTGTGTGT 60.589 61.111 17.01 0.00 44.49 3.72
1445 1475 1.068125 CAGTGTGTGTGCAATCCATGG 60.068 52.381 4.97 4.97 0.00 3.66
1497 1527 4.347292 TCTGCCATCTGCTTCATCTTATCT 59.653 41.667 0.00 0.00 42.00 1.98
1520 1550 3.243501 TGCTTGATGTTTCACTGCTTTCC 60.244 43.478 0.00 0.00 34.50 3.13
1563 1593 2.752354 TGGGTTCGATTGGCAAATACAG 59.248 45.455 3.01 0.00 0.00 2.74
1574 1604 4.849883 TGGCAAATACAGTAACACAAACG 58.150 39.130 0.00 0.00 0.00 3.60
1621 1652 4.039357 CTCCGCGGTGTCGTCTGT 62.039 66.667 27.15 0.00 38.89 3.41
1712 1743 1.978097 CACAACCGCAATCATCAAACG 59.022 47.619 0.00 0.00 0.00 3.60
1719 1750 3.410850 CGCAATCATCAAACGAACAGAG 58.589 45.455 0.00 0.00 0.00 3.35
1746 1777 5.680619 TCAGGACACAGAACTGTTACAAAT 58.319 37.500 4.63 0.00 42.83 2.32
1749 1780 5.236478 AGGACACAGAACTGTTACAAATTCG 59.764 40.000 4.63 0.00 42.83 3.34
1764 1795 1.909700 ATTCGCACAACCAATCACCT 58.090 45.000 0.00 0.00 0.00 4.00
1799 1830 8.902540 ATGATGTCTCAAAAAGTAACACTACA 57.097 30.769 0.00 0.00 34.37 2.74
1835 1866 6.156519 CCACACTTACCCAAAAATTAGAAGC 58.843 40.000 0.00 0.00 0.00 3.86
1876 1907 4.594970 TGAACAGAAAAGTCAAAGGTGGA 58.405 39.130 0.00 0.00 0.00 4.02
1883 1914 2.640316 AGTCAAAGGTGGACACTTCC 57.360 50.000 2.13 0.00 43.19 3.46
1891 1922 3.671716 AGGTGGACACTTCCGAAATTAC 58.328 45.455 2.13 0.00 46.37 1.89
1895 1926 3.839490 TGGACACTTCCGAAATTACCCTA 59.161 43.478 0.00 0.00 46.37 3.53
1896 1927 4.472108 TGGACACTTCCGAAATTACCCTAT 59.528 41.667 0.00 0.00 46.37 2.57
1914 1946 6.687604 ACCCTATGCATTTAGAAACAACAAC 58.312 36.000 3.54 0.00 0.00 3.32
1939 1971 9.533253 ACAAAACTTCCTCAATCAACTTTTATG 57.467 29.630 0.00 0.00 0.00 1.90
1946 1978 8.561738 TCCTCAATCAACTTTTATGTTACCTC 57.438 34.615 0.00 0.00 0.00 3.85
1947 1979 8.160765 TCCTCAATCAACTTTTATGTTACCTCA 58.839 33.333 0.00 0.00 0.00 3.86
1956 2031 2.762535 ATGTTACCTCACAGAACCCG 57.237 50.000 0.00 0.00 0.00 5.28
1969 2044 1.628846 AGAACCCGTGATTACAAGCCT 59.371 47.619 0.00 0.00 0.00 4.58
1994 2069 9.436957 CTTTGTGAGTGATATAAAGTACACCTT 57.563 33.333 0.00 0.00 34.33 3.50
2055 2130 3.571571 TGTTTCGACTCATGTAGGTTCG 58.428 45.455 0.00 0.00 0.00 3.95
2056 2131 2.921754 GTTTCGACTCATGTAGGTTCGG 59.078 50.000 0.00 0.00 0.00 4.30
2057 2132 1.100510 TCGACTCATGTAGGTTCGGG 58.899 55.000 0.00 0.00 0.00 5.14
2058 2133 0.102481 CGACTCATGTAGGTTCGGGG 59.898 60.000 0.00 0.00 0.00 5.73
2059 2134 1.481871 GACTCATGTAGGTTCGGGGA 58.518 55.000 0.00 0.00 0.00 4.81
2060 2135 1.136500 GACTCATGTAGGTTCGGGGAC 59.864 57.143 0.00 0.00 0.00 4.46
2073 2148 4.500125 GGGACCCCAGGATCTTCA 57.500 61.111 0.00 0.00 35.81 3.02
2074 2149 2.225792 GGGACCCCAGGATCTTCAG 58.774 63.158 0.00 0.00 35.81 3.02
2075 2150 0.621862 GGGACCCCAGGATCTTCAGT 60.622 60.000 0.00 0.00 35.81 3.41
2076 2151 0.833949 GGACCCCAGGATCTTCAGTC 59.166 60.000 0.00 0.00 0.00 3.51
2077 2152 0.461961 GACCCCAGGATCTTCAGTCG 59.538 60.000 0.00 0.00 0.00 4.18
2078 2153 0.978146 ACCCCAGGATCTTCAGTCGG 60.978 60.000 0.00 0.00 0.00 4.79
2079 2154 1.144936 CCCAGGATCTTCAGTCGGC 59.855 63.158 0.00 0.00 0.00 5.54
2080 2155 1.144936 CCAGGATCTTCAGTCGGCC 59.855 63.158 0.00 0.00 0.00 6.13
2081 2156 1.617018 CCAGGATCTTCAGTCGGCCA 61.617 60.000 2.24 0.00 0.00 5.36
2082 2157 0.467384 CAGGATCTTCAGTCGGCCAT 59.533 55.000 2.24 0.00 0.00 4.40
2083 2158 0.467384 AGGATCTTCAGTCGGCCATG 59.533 55.000 2.24 0.00 0.00 3.66
2084 2159 0.179000 GGATCTTCAGTCGGCCATGT 59.821 55.000 2.24 0.00 0.00 3.21
2085 2160 1.412710 GGATCTTCAGTCGGCCATGTA 59.587 52.381 2.24 0.00 0.00 2.29
2086 2161 2.474816 GATCTTCAGTCGGCCATGTAC 58.525 52.381 2.24 0.00 0.00 2.90
2087 2162 1.557099 TCTTCAGTCGGCCATGTACT 58.443 50.000 2.24 0.00 0.00 2.73
2088 2163 2.730382 TCTTCAGTCGGCCATGTACTA 58.270 47.619 2.24 0.00 0.00 1.82
2089 2164 2.426024 TCTTCAGTCGGCCATGTACTAC 59.574 50.000 2.24 0.00 0.00 2.73
2090 2165 0.736636 TCAGTCGGCCATGTACTACG 59.263 55.000 2.24 0.00 0.00 3.51
2091 2166 0.870307 CAGTCGGCCATGTACTACGC 60.870 60.000 2.24 0.00 0.00 4.42
2092 2167 1.590792 GTCGGCCATGTACTACGCC 60.591 63.158 2.24 7.39 38.07 5.68
2093 2168 2.279918 CGGCCATGTACTACGCCC 60.280 66.667 2.24 0.00 38.19 6.13
2094 2169 2.279918 GGCCATGTACTACGCCCG 60.280 66.667 0.00 0.00 35.23 6.13
2095 2170 2.965462 GCCATGTACTACGCCCGC 60.965 66.667 0.00 0.00 0.00 6.13
2096 2171 2.657296 CCATGTACTACGCCCGCG 60.657 66.667 7.69 7.69 46.03 6.46
2097 2172 3.327754 CATGTACTACGCCCGCGC 61.328 66.667 9.37 0.00 44.19 6.86
2135 2210 3.837578 CCATCCAGCAGGCATCAC 58.162 61.111 0.00 0.00 33.74 3.06
2136 2211 1.826921 CCATCCAGCAGGCATCACC 60.827 63.158 0.00 0.00 39.61 4.02
2137 2212 2.184830 CATCCAGCAGGCATCACCG 61.185 63.158 0.00 0.00 46.52 4.94
2138 2213 2.673200 ATCCAGCAGGCATCACCGT 61.673 57.895 0.00 0.00 46.52 4.83
2139 2214 2.599645 ATCCAGCAGGCATCACCGTC 62.600 60.000 0.00 0.00 46.52 4.79
2140 2215 2.821366 CAGCAGGCATCACCGTCC 60.821 66.667 0.00 0.00 46.52 4.79
2141 2216 4.101448 AGCAGGCATCACCGTCCC 62.101 66.667 0.00 0.00 46.52 4.46
2178 2253 3.840594 CGGGCCGGATTCCGTACA 61.841 66.667 20.56 0.00 46.80 2.90
2179 2254 2.585698 GGGCCGGATTCCGTACAA 59.414 61.111 22.83 0.00 46.80 2.41
2180 2255 1.523032 GGGCCGGATTCCGTACAAG 60.523 63.158 22.83 8.93 46.80 3.16
2181 2256 1.523032 GGCCGGATTCCGTACAAGG 60.523 63.158 22.83 8.23 46.80 3.61
2182 2257 1.219935 GCCGGATTCCGTACAAGGT 59.780 57.895 22.83 0.00 46.80 3.50
2183 2258 0.808847 GCCGGATTCCGTACAAGGTC 60.809 60.000 22.83 1.00 46.80 3.85
2184 2259 0.526954 CCGGATTCCGTACAAGGTCG 60.527 60.000 22.83 1.31 46.80 4.79
2185 2260 0.526954 CGGATTCCGTACAAGGTCGG 60.527 60.000 17.08 0.00 46.93 4.79
2186 2261 0.808847 GGATTCCGTACAAGGTCGGC 60.809 60.000 0.00 0.00 45.44 5.54
2187 2262 0.808847 GATTCCGTACAAGGTCGGCC 60.809 60.000 0.00 0.00 45.44 6.13
2189 2264 2.125673 CCGTACAAGGTCGGCCTG 60.126 66.667 10.71 6.65 46.33 4.85
2190 2265 2.813908 CGTACAAGGTCGGCCTGC 60.814 66.667 10.71 0.00 46.33 4.85
2191 2266 2.813908 GTACAAGGTCGGCCTGCG 60.814 66.667 10.71 6.80 46.33 5.18
2192 2267 4.752879 TACAAGGTCGGCCTGCGC 62.753 66.667 10.71 0.00 46.33 6.09
2246 2321 4.424711 GCCCATTCCACCGGCTCA 62.425 66.667 0.00 0.00 39.70 4.26
2247 2322 2.438434 CCCATTCCACCGGCTCAC 60.438 66.667 0.00 0.00 0.00 3.51
2248 2323 2.438434 CCATTCCACCGGCTCACC 60.438 66.667 0.00 0.00 0.00 4.02
2249 2324 2.671070 CATTCCACCGGCTCACCT 59.329 61.111 0.00 0.00 0.00 4.00
2250 2325 1.450312 CATTCCACCGGCTCACCTC 60.450 63.158 0.00 0.00 0.00 3.85
2251 2326 1.918293 ATTCCACCGGCTCACCTCA 60.918 57.895 0.00 0.00 0.00 3.86
2252 2327 1.903877 ATTCCACCGGCTCACCTCAG 61.904 60.000 0.00 0.00 0.00 3.35
2253 2328 4.767255 CCACCGGCTCACCTCAGC 62.767 72.222 0.00 0.00 38.84 4.26
2259 2334 3.768922 GCTCACCTCAGCCGAGCT 61.769 66.667 6.35 0.00 46.86 4.09
2260 2335 2.418910 GCTCACCTCAGCCGAGCTA 61.419 63.158 6.35 0.00 46.86 3.32
2261 2336 1.435515 CTCACCTCAGCCGAGCTAC 59.564 63.158 0.00 0.00 36.40 3.58
2262 2337 1.000771 TCACCTCAGCCGAGCTACT 60.001 57.895 0.00 0.00 36.40 2.57
2263 2338 1.032657 TCACCTCAGCCGAGCTACTC 61.033 60.000 0.00 0.00 36.40 2.59
2289 2364 2.912025 CCGCCAAGGGTTGTGCTT 60.912 61.111 0.00 0.00 35.97 3.91
2290 2365 2.644992 CGCCAAGGGTTGTGCTTC 59.355 61.111 0.00 0.00 0.00 3.86
2291 2366 2.192861 CGCCAAGGGTTGTGCTTCA 61.193 57.895 0.00 0.00 0.00 3.02
2292 2367 1.733402 CGCCAAGGGTTGTGCTTCAA 61.733 55.000 0.00 0.00 0.00 2.69
2300 2375 2.774044 TTGTGCTTCAACTGCGACA 58.226 47.368 0.00 0.00 0.00 4.35
2301 2376 1.090728 TTGTGCTTCAACTGCGACAA 58.909 45.000 0.00 0.00 33.05 3.18
2302 2377 0.657312 TGTGCTTCAACTGCGACAAG 59.343 50.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.812626 TCGTACTTCTTTTTGTTGAGGGAC 59.187 41.667 0.00 0.00 0.00 4.46
1 2 5.026038 TCGTACTTCTTTTTGTTGAGGGA 57.974 39.130 0.00 0.00 0.00 4.20
2 3 5.744666 TTCGTACTTCTTTTTGTTGAGGG 57.255 39.130 0.00 0.00 0.00 4.30
3 4 6.548171 TGTTTCGTACTTCTTTTTGTTGAGG 58.452 36.000 0.00 0.00 0.00 3.86
4 5 8.442605 TTTGTTTCGTACTTCTTTTTGTTGAG 57.557 30.769 0.00 0.00 0.00 3.02
5 6 7.539366 CCTTTGTTTCGTACTTCTTTTTGTTGA 59.461 33.333 0.00 0.00 0.00 3.18
6 7 7.662761 CCTTTGTTTCGTACTTCTTTTTGTTG 58.337 34.615 0.00 0.00 0.00 3.33
7 8 6.309494 GCCTTTGTTTCGTACTTCTTTTTGTT 59.691 34.615 0.00 0.00 0.00 2.83
8 9 5.803461 GCCTTTGTTTCGTACTTCTTTTTGT 59.197 36.000 0.00 0.00 0.00 2.83
9 10 5.802956 TGCCTTTGTTTCGTACTTCTTTTTG 59.197 36.000 0.00 0.00 0.00 2.44
10 11 5.803461 GTGCCTTTGTTTCGTACTTCTTTTT 59.197 36.000 0.00 0.00 0.00 1.94
11 12 5.124936 AGTGCCTTTGTTTCGTACTTCTTTT 59.875 36.000 0.00 0.00 0.00 2.27
12 13 4.638865 AGTGCCTTTGTTTCGTACTTCTTT 59.361 37.500 0.00 0.00 0.00 2.52
13 14 4.196971 AGTGCCTTTGTTTCGTACTTCTT 58.803 39.130 0.00 0.00 0.00 2.52
14 15 3.805207 AGTGCCTTTGTTTCGTACTTCT 58.195 40.909 0.00 0.00 0.00 2.85
15 16 4.547406 AAGTGCCTTTGTTTCGTACTTC 57.453 40.909 0.00 0.00 0.00 3.01
16 17 5.007332 CAGTAAGTGCCTTTGTTTCGTACTT 59.993 40.000 0.00 0.00 0.00 2.24
17 18 4.510340 CAGTAAGTGCCTTTGTTTCGTACT 59.490 41.667 0.00 0.00 0.00 2.73
18 19 4.508861 TCAGTAAGTGCCTTTGTTTCGTAC 59.491 41.667 0.00 0.00 0.00 3.67
19 20 4.695396 TCAGTAAGTGCCTTTGTTTCGTA 58.305 39.130 0.00 0.00 0.00 3.43
20 21 3.537580 TCAGTAAGTGCCTTTGTTTCGT 58.462 40.909 0.00 0.00 0.00 3.85
21 22 4.749245 ATCAGTAAGTGCCTTTGTTTCG 57.251 40.909 0.00 0.00 0.00 3.46
22 23 6.554334 TGTATCAGTAAGTGCCTTTGTTTC 57.446 37.500 0.00 0.00 0.00 2.78
23 24 6.952773 TTGTATCAGTAAGTGCCTTTGTTT 57.047 33.333 0.00 0.00 0.00 2.83
24 25 8.807948 ATATTGTATCAGTAAGTGCCTTTGTT 57.192 30.769 0.00 0.00 0.00 2.83
25 26 7.499232 GGATATTGTATCAGTAAGTGCCTTTGT 59.501 37.037 0.03 0.00 0.00 2.83
26 27 7.041098 GGGATATTGTATCAGTAAGTGCCTTTG 60.041 40.741 0.03 0.00 0.00 2.77
27 28 6.998673 GGGATATTGTATCAGTAAGTGCCTTT 59.001 38.462 0.03 0.00 0.00 3.11
28 29 6.101150 TGGGATATTGTATCAGTAAGTGCCTT 59.899 38.462 0.03 0.00 0.00 4.35
29 30 5.606749 TGGGATATTGTATCAGTAAGTGCCT 59.393 40.000 0.03 0.00 0.00 4.75
30 31 5.865085 TGGGATATTGTATCAGTAAGTGCC 58.135 41.667 0.03 0.00 0.00 5.01
31 32 7.801716 TTTGGGATATTGTATCAGTAAGTGC 57.198 36.000 0.03 0.00 0.00 4.40
33 34 9.975218 AGTTTTTGGGATATTGTATCAGTAAGT 57.025 29.630 0.03 0.00 0.00 2.24
37 38 9.614792 GAGTAGTTTTTGGGATATTGTATCAGT 57.385 33.333 0.03 0.00 0.00 3.41
38 39 9.057089 GGAGTAGTTTTTGGGATATTGTATCAG 57.943 37.037 0.03 0.00 0.00 2.90
39 40 7.996644 GGGAGTAGTTTTTGGGATATTGTATCA 59.003 37.037 0.03 0.00 0.00 2.15
40 41 8.218488 AGGGAGTAGTTTTTGGGATATTGTATC 58.782 37.037 0.00 0.00 0.00 2.24
41 42 8.114301 AGGGAGTAGTTTTTGGGATATTGTAT 57.886 34.615 0.00 0.00 0.00 2.29
42 43 7.366191 GGAGGGAGTAGTTTTTGGGATATTGTA 60.366 40.741 0.00 0.00 0.00 2.41
43 44 6.402981 AGGGAGTAGTTTTTGGGATATTGT 57.597 37.500 0.00 0.00 0.00 2.71
44 45 5.828328 GGAGGGAGTAGTTTTTGGGATATTG 59.172 44.000 0.00 0.00 0.00 1.90
45 46 5.397559 CGGAGGGAGTAGTTTTTGGGATATT 60.398 44.000 0.00 0.00 0.00 1.28
46 47 4.102681 CGGAGGGAGTAGTTTTTGGGATAT 59.897 45.833 0.00 0.00 0.00 1.63
47 48 3.453353 CGGAGGGAGTAGTTTTTGGGATA 59.547 47.826 0.00 0.00 0.00 2.59
48 49 2.238898 CGGAGGGAGTAGTTTTTGGGAT 59.761 50.000 0.00 0.00 0.00 3.85
49 50 1.626825 CGGAGGGAGTAGTTTTTGGGA 59.373 52.381 0.00 0.00 0.00 4.37
50 51 1.350019 ACGGAGGGAGTAGTTTTTGGG 59.650 52.381 0.00 0.00 0.00 4.12
51 52 2.614734 GGACGGAGGGAGTAGTTTTTGG 60.615 54.545 0.00 0.00 0.00 3.28
52 53 2.302157 AGGACGGAGGGAGTAGTTTTTG 59.698 50.000 0.00 0.00 0.00 2.44
53 54 2.617658 AGGACGGAGGGAGTAGTTTTT 58.382 47.619 0.00 0.00 0.00 1.94
54 55 2.322339 AGGACGGAGGGAGTAGTTTT 57.678 50.000 0.00 0.00 0.00 2.43
55 56 2.311243 AGTAGGACGGAGGGAGTAGTTT 59.689 50.000 0.00 0.00 0.00 2.66
56 57 1.921748 AGTAGGACGGAGGGAGTAGTT 59.078 52.381 0.00 0.00 0.00 2.24
57 58 1.490069 GAGTAGGACGGAGGGAGTAGT 59.510 57.143 0.00 0.00 0.00 2.73
58 59 1.202794 GGAGTAGGACGGAGGGAGTAG 60.203 61.905 0.00 0.00 0.00 2.57
59 60 0.842635 GGAGTAGGACGGAGGGAGTA 59.157 60.000 0.00 0.00 0.00 2.59
60 61 1.614160 GGAGTAGGACGGAGGGAGT 59.386 63.158 0.00 0.00 0.00 3.85
61 62 1.152715 GGGAGTAGGACGGAGGGAG 60.153 68.421 0.00 0.00 0.00 4.30
62 63 1.621822 AGGGAGTAGGACGGAGGGA 60.622 63.158 0.00 0.00 0.00 4.20
63 64 1.152715 GAGGGAGTAGGACGGAGGG 60.153 68.421 0.00 0.00 0.00 4.30
64 65 1.152715 GGAGGGAGTAGGACGGAGG 60.153 68.421 0.00 0.00 0.00 4.30
65 66 1.526455 CGGAGGGAGTAGGACGGAG 60.526 68.421 0.00 0.00 0.00 4.63
66 67 2.262774 GACGGAGGGAGTAGGACGGA 62.263 65.000 0.00 0.00 0.00 4.69
67 68 1.823041 GACGGAGGGAGTAGGACGG 60.823 68.421 0.00 0.00 0.00 4.79
68 69 1.823041 GGACGGAGGGAGTAGGACG 60.823 68.421 0.00 0.00 0.00 4.79
69 70 1.823041 CGGACGGAGGGAGTAGGAC 60.823 68.421 0.00 0.00 0.00 3.85
70 71 1.565390 TTCGGACGGAGGGAGTAGGA 61.565 60.000 0.00 0.00 0.00 2.94
71 72 0.682209 TTTCGGACGGAGGGAGTAGG 60.682 60.000 0.00 0.00 0.00 3.18
72 73 1.180029 TTTTCGGACGGAGGGAGTAG 58.820 55.000 0.00 0.00 0.00 2.57
73 74 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
74 75 1.856629 TATTTTCGGACGGAGGGAGT 58.143 50.000 0.00 0.00 0.00 3.85
75 76 3.470645 AATATTTTCGGACGGAGGGAG 57.529 47.619 0.00 0.00 0.00 4.30
76 77 3.054948 ACAAATATTTTCGGACGGAGGGA 60.055 43.478 0.00 0.00 0.00 4.20
77 78 3.275999 ACAAATATTTTCGGACGGAGGG 58.724 45.455 0.00 0.00 0.00 4.30
78 79 3.936453 TGACAAATATTTTCGGACGGAGG 59.064 43.478 0.00 0.00 0.00 4.30
79 80 5.539582 TTGACAAATATTTTCGGACGGAG 57.460 39.130 0.00 0.00 0.00 4.63
80 81 5.943706 TTTGACAAATATTTTCGGACGGA 57.056 34.783 0.00 0.00 0.00 4.69
81 82 6.375377 TCTTTTGACAAATATTTTCGGACGG 58.625 36.000 0.50 0.00 0.00 4.79
82 83 7.845617 TTCTTTTGACAAATATTTTCGGACG 57.154 32.000 0.50 0.00 0.00 4.79
83 84 9.405587 TCATTCTTTTGACAAATATTTTCGGAC 57.594 29.630 0.50 0.00 0.00 4.79
84 85 9.973450 TTCATTCTTTTGACAAATATTTTCGGA 57.027 25.926 0.50 0.00 0.00 4.55
96 97 9.087424 CGTCTAGATACATTCATTCTTTTGACA 57.913 33.333 0.00 0.00 0.00 3.58
97 98 9.088512 ACGTCTAGATACATTCATTCTTTTGAC 57.911 33.333 0.00 0.00 0.00 3.18
136 137 9.546909 CGTAGAAATGCATAAAATGGATGTATC 57.453 33.333 0.00 0.00 40.66 2.24
137 138 9.283768 TCGTAGAAATGCATAAAATGGATGTAT 57.716 29.630 0.00 0.00 40.66 2.29
138 139 8.556194 GTCGTAGAAATGCATAAAATGGATGTA 58.444 33.333 0.00 0.00 40.66 2.29
139 140 7.066887 TGTCGTAGAAATGCATAAAATGGATGT 59.933 33.333 0.00 0.00 40.66 3.06
140 141 7.416817 TGTCGTAGAAATGCATAAAATGGATG 58.583 34.615 0.00 0.00 40.66 3.51
141 142 7.566760 TGTCGTAGAAATGCATAAAATGGAT 57.433 32.000 0.00 0.00 43.57 3.41
142 143 6.993786 TGTCGTAGAAATGCATAAAATGGA 57.006 33.333 0.00 0.00 39.69 3.41
143 144 7.250569 ACTTGTCGTAGAAATGCATAAAATGG 58.749 34.615 0.00 0.00 39.69 3.16
144 145 9.935682 ATACTTGTCGTAGAAATGCATAAAATG 57.064 29.630 0.00 0.00 39.69 2.32
147 148 9.982291 GAAATACTTGTCGTAGAAATGCATAAA 57.018 29.630 0.00 0.00 39.69 1.40
148 149 8.609176 GGAAATACTTGTCGTAGAAATGCATAA 58.391 33.333 0.00 0.00 39.69 1.90
149 150 7.042992 CGGAAATACTTGTCGTAGAAATGCATA 60.043 37.037 0.00 0.00 39.69 3.14
150 151 6.238103 CGGAAATACTTGTCGTAGAAATGCAT 60.238 38.462 0.00 0.00 39.69 3.96
151 152 5.062934 CGGAAATACTTGTCGTAGAAATGCA 59.937 40.000 0.00 0.00 39.69 3.96
152 153 5.290158 TCGGAAATACTTGTCGTAGAAATGC 59.710 40.000 0.00 0.00 39.69 3.56
153 154 6.880822 TCGGAAATACTTGTCGTAGAAATG 57.119 37.500 0.00 0.00 39.69 2.32
154 155 6.034256 CGTTCGGAAATACTTGTCGTAGAAAT 59.966 38.462 0.00 0.00 39.69 2.17
155 156 5.343058 CGTTCGGAAATACTTGTCGTAGAAA 59.657 40.000 0.00 0.00 39.69 2.52
156 157 4.853196 CGTTCGGAAATACTTGTCGTAGAA 59.147 41.667 0.00 0.00 39.69 2.10
157 158 4.406069 CGTTCGGAAATACTTGTCGTAGA 58.594 43.478 0.00 0.00 0.00 2.59
158 159 3.545078 CCGTTCGGAAATACTTGTCGTAG 59.455 47.826 5.19 0.00 0.00 3.51
159 160 3.190327 TCCGTTCGGAAATACTTGTCGTA 59.810 43.478 11.66 0.00 0.00 3.43
160 161 2.030007 TCCGTTCGGAAATACTTGTCGT 60.030 45.455 11.66 0.00 0.00 4.34
161 162 2.597305 CTCCGTTCGGAAATACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
162 163 2.928116 CCTCCGTTCGGAAATACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
163 164 2.354403 CCCTCCGTTCGGAAATACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
164 165 2.093869 TCCCTCCGTTCGGAAATACTTG 60.094 50.000 14.79 1.97 33.41 3.16
165 166 2.167900 CTCCCTCCGTTCGGAAATACTT 59.832 50.000 14.79 0.00 33.41 2.24
166 167 1.755380 CTCCCTCCGTTCGGAAATACT 59.245 52.381 14.79 0.00 33.41 2.12
167 168 1.479730 ACTCCCTCCGTTCGGAAATAC 59.520 52.381 14.79 0.00 33.41 1.89
168 169 1.479323 CACTCCCTCCGTTCGGAAATA 59.521 52.381 14.79 2.82 33.41 1.40
169 170 0.249398 CACTCCCTCCGTTCGGAAAT 59.751 55.000 14.79 0.00 33.41 2.17
170 171 0.828762 TCACTCCCTCCGTTCGGAAA 60.829 55.000 14.79 3.49 33.41 3.13
171 172 1.228644 TCACTCCCTCCGTTCGGAA 60.229 57.895 14.79 0.04 33.41 4.30
172 173 1.677966 CTCACTCCCTCCGTTCGGA 60.678 63.158 13.34 13.34 0.00 4.55
173 174 0.679002 TACTCACTCCCTCCGTTCGG 60.679 60.000 4.74 4.74 0.00 4.30
174 175 1.390565 ATACTCACTCCCTCCGTTCG 58.609 55.000 0.00 0.00 0.00 3.95
175 176 5.532664 AATTATACTCACTCCCTCCGTTC 57.467 43.478 0.00 0.00 0.00 3.95
176 177 5.952347 AAATTATACTCACTCCCTCCGTT 57.048 39.130 0.00 0.00 0.00 4.44
177 178 6.837568 TCTTAAATTATACTCACTCCCTCCGT 59.162 38.462 0.00 0.00 0.00 4.69
178 179 7.146648 GTCTTAAATTATACTCACTCCCTCCG 58.853 42.308 0.00 0.00 0.00 4.63
179 180 7.146648 CGTCTTAAATTATACTCACTCCCTCC 58.853 42.308 0.00 0.00 0.00 4.30
180 181 7.714703 ACGTCTTAAATTATACTCACTCCCTC 58.285 38.462 0.00 0.00 0.00 4.30
181 182 7.657023 ACGTCTTAAATTATACTCACTCCCT 57.343 36.000 0.00 0.00 0.00 4.20
182 183 9.978044 ATTACGTCTTAAATTATACTCACTCCC 57.022 33.333 0.00 0.00 0.00 4.30
185 186 9.760077 CCCATTACGTCTTAAATTATACTCACT 57.240 33.333 0.00 0.00 0.00 3.41
186 187 9.754382 TCCCATTACGTCTTAAATTATACTCAC 57.246 33.333 0.00 0.00 0.00 3.51
187 188 9.754382 GTCCCATTACGTCTTAAATTATACTCA 57.246 33.333 0.00 0.00 0.00 3.41
188 189 8.909671 CGTCCCATTACGTCTTAAATTATACTC 58.090 37.037 0.00 0.00 38.07 2.59
189 190 7.869429 CCGTCCCATTACGTCTTAAATTATACT 59.131 37.037 0.00 0.00 41.27 2.12
190 191 7.867403 TCCGTCCCATTACGTCTTAAATTATAC 59.133 37.037 0.00 0.00 41.27 1.47
191 192 7.950512 TCCGTCCCATTACGTCTTAAATTATA 58.049 34.615 0.00 0.00 41.27 0.98
192 193 6.819284 TCCGTCCCATTACGTCTTAAATTAT 58.181 36.000 0.00 0.00 41.27 1.28
193 194 6.219417 TCCGTCCCATTACGTCTTAAATTA 57.781 37.500 0.00 0.00 41.27 1.40
194 195 5.088680 TCCGTCCCATTACGTCTTAAATT 57.911 39.130 0.00 0.00 41.27 1.82
195 196 4.442472 CCTCCGTCCCATTACGTCTTAAAT 60.442 45.833 0.00 0.00 41.27 1.40
196 197 3.119029 CCTCCGTCCCATTACGTCTTAAA 60.119 47.826 0.00 0.00 41.27 1.52
197 198 2.428171 CCTCCGTCCCATTACGTCTTAA 59.572 50.000 0.00 0.00 41.27 1.85
198 199 2.026641 CCTCCGTCCCATTACGTCTTA 58.973 52.381 0.00 0.00 41.27 2.10
199 200 0.822164 CCTCCGTCCCATTACGTCTT 59.178 55.000 0.00 0.00 41.27 3.01
200 201 1.041447 CCCTCCGTCCCATTACGTCT 61.041 60.000 0.00 0.00 41.27 4.18
201 202 1.039233 TCCCTCCGTCCCATTACGTC 61.039 60.000 0.00 0.00 41.27 4.34
202 203 1.000739 TCCCTCCGTCCCATTACGT 59.999 57.895 0.00 0.00 41.27 3.57
203 204 1.041447 ACTCCCTCCGTCCCATTACG 61.041 60.000 0.00 0.00 42.49 3.18
204 205 2.077687 TACTCCCTCCGTCCCATTAC 57.922 55.000 0.00 0.00 0.00 1.89
205 206 2.178325 TCATACTCCCTCCGTCCCATTA 59.822 50.000 0.00 0.00 0.00 1.90
206 207 1.062428 TCATACTCCCTCCGTCCCATT 60.062 52.381 0.00 0.00 0.00 3.16
207 208 0.561184 TCATACTCCCTCCGTCCCAT 59.439 55.000 0.00 0.00 0.00 4.00
208 209 0.337082 TTCATACTCCCTCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
209 210 1.138464 GTTTCATACTCCCTCCGTCCC 59.862 57.143 0.00 0.00 0.00 4.46
210 211 1.829222 TGTTTCATACTCCCTCCGTCC 59.171 52.381 0.00 0.00 0.00 4.79
211 212 2.758979 TCTGTTTCATACTCCCTCCGTC 59.241 50.000 0.00 0.00 0.00 4.79
212 213 2.761208 CTCTGTTTCATACTCCCTCCGT 59.239 50.000 0.00 0.00 0.00 4.69
213 214 2.761208 ACTCTGTTTCATACTCCCTCCG 59.239 50.000 0.00 0.00 0.00 4.63
214 215 4.957327 AGTACTCTGTTTCATACTCCCTCC 59.043 45.833 0.00 0.00 0.00 4.30
215 216 5.889289 AGAGTACTCTGTTTCATACTCCCTC 59.111 44.000 24.62 0.00 42.98 4.30
216 217 5.833340 AGAGTACTCTGTTTCATACTCCCT 58.167 41.667 24.62 0.00 42.98 4.20
217 218 6.139048 GAGAGTACTCTGTTTCATACTCCC 57.861 45.833 29.84 6.86 42.98 4.30
235 236 8.997734 AGACAAATATTTAGGAATGGAGAGAGT 58.002 33.333 0.00 0.00 0.00 3.24
236 237 9.844257 AAGACAAATATTTAGGAATGGAGAGAG 57.156 33.333 0.00 0.00 0.00 3.20
257 258 8.786898 CCATTTGTTGAAATCTCTAGAAAGACA 58.213 33.333 0.00 0.00 28.65 3.41
258 259 7.752686 GCCATTTGTTGAAATCTCTAGAAAGAC 59.247 37.037 0.00 0.00 28.65 3.01
259 260 7.667219 AGCCATTTGTTGAAATCTCTAGAAAGA 59.333 33.333 0.00 0.00 28.65 2.52
260 261 7.824672 AGCCATTTGTTGAAATCTCTAGAAAG 58.175 34.615 0.00 0.00 28.65 2.62
261 262 7.765695 AGCCATTTGTTGAAATCTCTAGAAA 57.234 32.000 0.00 0.00 28.65 2.52
262 263 7.882791 TGTAGCCATTTGTTGAAATCTCTAGAA 59.117 33.333 0.00 0.00 28.65 2.10
263 264 7.394016 TGTAGCCATTTGTTGAAATCTCTAGA 58.606 34.615 0.00 0.00 28.65 2.43
264 265 7.615582 TGTAGCCATTTGTTGAAATCTCTAG 57.384 36.000 0.00 0.00 28.65 2.43
265 266 9.109393 GTATGTAGCCATTTGTTGAAATCTCTA 57.891 33.333 0.00 0.00 32.29 2.43
266 267 7.611467 TGTATGTAGCCATTTGTTGAAATCTCT 59.389 33.333 0.00 0.00 32.29 3.10
267 268 7.761409 TGTATGTAGCCATTTGTTGAAATCTC 58.239 34.615 0.00 0.00 32.29 2.75
268 269 7.701539 TGTATGTAGCCATTTGTTGAAATCT 57.298 32.000 0.00 0.00 32.29 2.40
269 270 8.755696 TTTGTATGTAGCCATTTGTTGAAATC 57.244 30.769 0.00 0.00 32.29 2.17
270 271 8.987890 GTTTTGTATGTAGCCATTTGTTGAAAT 58.012 29.630 0.00 0.00 32.29 2.17
271 272 7.981789 TGTTTTGTATGTAGCCATTTGTTGAAA 59.018 29.630 0.00 0.00 32.29 2.69
272 273 7.492524 TGTTTTGTATGTAGCCATTTGTTGAA 58.507 30.769 0.00 0.00 32.29 2.69
273 274 7.043961 TGTTTTGTATGTAGCCATTTGTTGA 57.956 32.000 0.00 0.00 32.29 3.18
274 275 7.706281 TTGTTTTGTATGTAGCCATTTGTTG 57.294 32.000 0.00 0.00 32.29 3.33
275 276 8.723942 TTTTGTTTTGTATGTAGCCATTTGTT 57.276 26.923 0.00 0.00 32.29 2.83
276 277 8.900983 ATTTTGTTTTGTATGTAGCCATTTGT 57.099 26.923 0.00 0.00 32.29 2.83
281 282 9.817809 TGTTTTATTTTGTTTTGTATGTAGCCA 57.182 25.926 0.00 0.00 0.00 4.75
343 344 9.429109 TCAAATAGACTACCACATACCTATGAA 57.571 33.333 0.00 0.00 37.15 2.57
344 345 9.429109 TTCAAATAGACTACCACATACCTATGA 57.571 33.333 0.00 0.00 37.15 2.15
348 349 8.993424 AGATTTCAAATAGACTACCACATACCT 58.007 33.333 0.00 0.00 0.00 3.08
349 350 9.262358 GAGATTTCAAATAGACTACCACATACC 57.738 37.037 0.00 0.00 0.00 2.73
380 381 9.511272 ACGGAGTAGTTCCTAAATATTTGTTTT 57.489 29.630 11.05 0.00 44.41 2.43
402 403 9.289782 GGGAGTAGTTACTAAATATTAGACGGA 57.710 37.037 4.24 0.00 36.50 4.69
403 404 9.294614 AGGGAGTAGTTACTAAATATTAGACGG 57.705 37.037 4.24 0.00 36.50 4.79
406 407 9.512588 CGGAGGGAGTAGTTACTAAATATTAGA 57.487 37.037 4.24 0.00 36.50 2.10
407 408 9.294614 ACGGAGGGAGTAGTTACTAAATATTAG 57.705 37.037 0.00 0.00 36.50 1.73
408 409 9.289782 GACGGAGGGAGTAGTTACTAAATATTA 57.710 37.037 0.00 0.00 36.50 0.98
409 410 7.232330 GGACGGAGGGAGTAGTTACTAAATATT 59.768 40.741 0.00 0.00 36.50 1.28
410 411 6.718912 GGACGGAGGGAGTAGTTACTAAATAT 59.281 42.308 0.00 0.00 36.50 1.28
411 412 6.064717 GGACGGAGGGAGTAGTTACTAAATA 58.935 44.000 0.00 0.00 36.50 1.40
412 413 4.892345 GGACGGAGGGAGTAGTTACTAAAT 59.108 45.833 0.00 0.00 36.50 1.40
413 414 4.018050 AGGACGGAGGGAGTAGTTACTAAA 60.018 45.833 0.00 0.00 36.50 1.85
414 415 3.525199 AGGACGGAGGGAGTAGTTACTAA 59.475 47.826 0.00 0.00 36.50 2.24
415 416 3.118531 AGGACGGAGGGAGTAGTTACTA 58.881 50.000 0.00 0.00 36.50 1.82
416 417 1.921748 AGGACGGAGGGAGTAGTTACT 59.078 52.381 0.00 0.00 39.71 2.24
417 418 2.433662 AGGACGGAGGGAGTAGTTAC 57.566 55.000 0.00 0.00 0.00 2.50
418 419 5.912149 TTATAGGACGGAGGGAGTAGTTA 57.088 43.478 0.00 0.00 0.00 2.24
419 420 4.803329 TTATAGGACGGAGGGAGTAGTT 57.197 45.455 0.00 0.00 0.00 2.24
420 421 5.336491 AATTATAGGACGGAGGGAGTAGT 57.664 43.478 0.00 0.00 0.00 2.73
421 422 6.377712 CCTAAATTATAGGACGGAGGGAGTAG 59.622 46.154 7.54 0.00 36.85 2.57
422 423 6.045931 TCCTAAATTATAGGACGGAGGGAGTA 59.954 42.308 10.55 0.00 38.71 2.59
423 424 5.085219 CCTAAATTATAGGACGGAGGGAGT 58.915 45.833 7.54 0.00 36.85 3.85
424 425 5.331069 TCCTAAATTATAGGACGGAGGGAG 58.669 45.833 10.55 0.00 38.71 4.30
425 426 5.343833 TCCTAAATTATAGGACGGAGGGA 57.656 43.478 10.55 0.00 38.71 4.20
433 434 7.309377 CGTCCCATTACGTCCTAAATTATAGGA 60.309 40.741 10.55 10.55 38.07 2.94
434 435 6.810182 CGTCCCATTACGTCCTAAATTATAGG 59.190 42.308 0.00 7.15 38.07 2.57
435 436 6.810182 CCGTCCCATTACGTCCTAAATTATAG 59.190 42.308 0.00 0.00 41.27 1.31
436 437 6.493115 TCCGTCCCATTACGTCCTAAATTATA 59.507 38.462 0.00 0.00 41.27 0.98
437 438 5.305128 TCCGTCCCATTACGTCCTAAATTAT 59.695 40.000 0.00 0.00 41.27 1.28
438 439 4.648762 TCCGTCCCATTACGTCCTAAATTA 59.351 41.667 0.00 0.00 41.27 1.40
439 440 3.451902 TCCGTCCCATTACGTCCTAAATT 59.548 43.478 0.00 0.00 41.27 1.82
440 441 3.033184 TCCGTCCCATTACGTCCTAAAT 58.967 45.455 0.00 0.00 41.27 1.40
441 442 2.428171 CTCCGTCCCATTACGTCCTAAA 59.572 50.000 0.00 0.00 41.27 1.85
442 443 2.026641 CTCCGTCCCATTACGTCCTAA 58.973 52.381 0.00 0.00 41.27 2.69
443 444 1.683943 CTCCGTCCCATTACGTCCTA 58.316 55.000 0.00 0.00 41.27 2.94
444 445 1.041447 CCTCCGTCCCATTACGTCCT 61.041 60.000 0.00 0.00 41.27 3.85
445 446 1.440476 CCTCCGTCCCATTACGTCC 59.560 63.158 0.00 0.00 41.27 4.79
446 447 1.039233 TCCCTCCGTCCCATTACGTC 61.039 60.000 0.00 0.00 41.27 4.34
447 448 1.000739 TCCCTCCGTCCCATTACGT 59.999 57.895 0.00 0.00 41.27 3.57
448 449 1.041447 ACTCCCTCCGTCCCATTACG 61.041 60.000 0.00 0.00 42.49 3.18
449 450 1.201424 AACTCCCTCCGTCCCATTAC 58.799 55.000 0.00 0.00 0.00 1.89
450 451 1.557832 CAAACTCCCTCCGTCCCATTA 59.442 52.381 0.00 0.00 0.00 1.90
451 452 0.328258 CAAACTCCCTCCGTCCCATT 59.672 55.000 0.00 0.00 0.00 3.16
468 469 7.148373 GGTGTCTTGTACAGTACTTTGTTTCAA 60.148 37.037 12.07 0.00 39.29 2.69
469 470 6.314400 GGTGTCTTGTACAGTACTTTGTTTCA 59.686 38.462 12.07 0.69 39.29 2.69
476 477 4.957296 CAAGGGTGTCTTGTACAGTACTT 58.043 43.478 12.07 1.80 45.81 2.24
488 489 0.473755 TGCATGTGTCAAGGGTGTCT 59.526 50.000 0.00 0.00 0.00 3.41
489 490 1.001378 GTTGCATGTGTCAAGGGTGTC 60.001 52.381 0.00 0.00 0.00 3.67
490 491 1.032014 GTTGCATGTGTCAAGGGTGT 58.968 50.000 0.00 0.00 0.00 4.16
491 492 1.321474 AGTTGCATGTGTCAAGGGTG 58.679 50.000 0.00 0.00 0.00 4.61
492 493 2.071778 AAGTTGCATGTGTCAAGGGT 57.928 45.000 0.00 0.00 0.00 4.34
598 600 2.044650 CCTCCGACGTAGGGGACA 60.045 66.667 17.19 0.00 32.01 4.02
618 620 3.196469 TGTTGGTGTCTGGATGATCTCTC 59.804 47.826 0.00 0.00 0.00 3.20
619 621 3.176411 TGTTGGTGTCTGGATGATCTCT 58.824 45.455 0.00 0.00 0.00 3.10
737 760 2.674084 GGTGCAACTTACCGGACGC 61.674 63.158 9.46 1.12 36.74 5.19
760 783 1.825622 GGATGCCTTGTAGCCTGGC 60.826 63.158 11.65 11.65 46.26 4.85
840 864 5.591877 CCTACATGAAGCAAGAATAAAGGCT 59.408 40.000 0.00 0.00 38.45 4.58
959 983 0.676151 GGCACTGGAAGGCTCAGAAG 60.676 60.000 9.94 3.82 39.30 2.85
964 988 3.254024 TTCCGGCACTGGAAGGCTC 62.254 63.158 6.86 0.00 43.01 4.70
1128 1152 0.392193 ACTCAGCCTTCTTGATGCCG 60.392 55.000 0.00 0.00 0.00 5.69
1195 1219 8.652290 AGGTGAAGGTTATAAGGATCTCAATAC 58.348 37.037 0.00 0.00 0.00 1.89
1243 1267 4.159321 TGCTGTCATTTGAAAAACACCAGA 59.841 37.500 0.00 0.00 0.00 3.86
1244 1268 4.431809 TGCTGTCATTTGAAAAACACCAG 58.568 39.130 0.00 0.00 0.00 4.00
1434 1462 3.507162 ATATTCGTCCCATGGATTGCA 57.493 42.857 15.22 0.00 32.73 4.08
1445 1475 8.123445 ACACGTCTTATTTGTAATATTCGTCC 57.877 34.615 0.00 0.00 0.00 4.79
1497 1527 4.362279 GAAAGCAGTGAAACATCAAGCAA 58.638 39.130 0.00 0.00 41.43 3.91
1520 1550 3.719173 ACAAACACACGTAAAATGGGG 57.281 42.857 0.00 0.00 0.00 4.96
1563 1593 1.323791 GCGATTGGCGTTTGTGTTAC 58.676 50.000 0.00 0.00 43.41 2.50
1574 1604 2.306255 TTAGGGTCTCGGCGATTGGC 62.306 60.000 11.27 0.00 42.51 4.52
1712 1743 4.887748 TCTGTGTCCTGAAATCTCTGTTC 58.112 43.478 0.00 0.00 0.00 3.18
1719 1750 5.758296 TGTAACAGTTCTGTGTCCTGAAATC 59.242 40.000 6.22 0.00 31.36 2.17
1746 1777 1.686355 AAGGTGATTGGTTGTGCGAA 58.314 45.000 0.00 0.00 0.00 4.70
1749 1780 3.305110 CGTTTAAGGTGATTGGTTGTGC 58.695 45.455 0.00 0.00 0.00 4.57
1764 1795 6.552859 TTTTGAGACATCATCAGCGTTTAA 57.447 33.333 0.00 0.00 34.73 1.52
1799 1830 2.592102 AAGTGTGGCTGGTCATTCAT 57.408 45.000 0.00 0.00 0.00 2.57
1835 1866 6.964908 TGTTCATAATTACCAAGTGTGTGTG 58.035 36.000 0.00 0.00 0.00 3.82
1876 1907 4.196971 GCATAGGGTAATTTCGGAAGTGT 58.803 43.478 0.00 0.00 0.00 3.55
1883 1914 8.402472 TGTTTCTAAATGCATAGGGTAATTTCG 58.598 33.333 0.00 0.00 0.00 3.46
1891 1922 6.686630 TGTTGTTGTTTCTAAATGCATAGGG 58.313 36.000 0.00 0.00 0.00 3.53
1895 1926 8.491331 AGTTTTGTTGTTGTTTCTAAATGCAT 57.509 26.923 0.00 0.00 0.00 3.96
1896 1927 7.897575 AGTTTTGTTGTTGTTTCTAAATGCA 57.102 28.000 0.00 0.00 0.00 3.96
1914 1946 9.533253 ACATAAAAGTTGATTGAGGAAGTTTTG 57.467 29.630 0.00 0.00 36.09 2.44
1939 1971 1.342174 TCACGGGTTCTGTGAGGTAAC 59.658 52.381 5.55 0.00 41.20 2.50
1946 1978 2.159627 GCTTGTAATCACGGGTTCTGTG 59.840 50.000 0.73 0.73 38.70 3.66
1947 1979 2.423577 GCTTGTAATCACGGGTTCTGT 58.576 47.619 0.00 0.00 0.00 3.41
1956 2031 4.515191 TCACTCACAAAGGCTTGTAATCAC 59.485 41.667 0.00 0.00 44.15 3.06
1994 2069 7.447238 CCCCTTCTGTTTTTGAAGTTGTAGATA 59.553 37.037 0.00 0.00 39.24 1.98
2003 2078 7.107639 TCTTTTACCCCTTCTGTTTTTGAAG 57.892 36.000 0.00 0.00 40.23 3.02
2055 2130 1.307866 TGAAGATCCTGGGGTCCCC 60.308 63.158 21.64 21.64 45.71 4.81
2056 2131 0.621862 ACTGAAGATCCTGGGGTCCC 60.622 60.000 0.00 0.00 0.00 4.46
2057 2132 0.833949 GACTGAAGATCCTGGGGTCC 59.166 60.000 0.00 0.00 0.00 4.46
2058 2133 0.461961 CGACTGAAGATCCTGGGGTC 59.538 60.000 0.00 0.00 0.00 4.46
2059 2134 0.978146 CCGACTGAAGATCCTGGGGT 60.978 60.000 0.00 0.00 0.00 4.95
2060 2135 1.826024 CCGACTGAAGATCCTGGGG 59.174 63.158 0.00 0.00 0.00 4.96
2061 2136 1.144936 GCCGACTGAAGATCCTGGG 59.855 63.158 0.00 0.00 0.00 4.45
2062 2137 1.144936 GGCCGACTGAAGATCCTGG 59.855 63.158 0.00 0.00 0.00 4.45
2063 2138 0.467384 ATGGCCGACTGAAGATCCTG 59.533 55.000 0.00 0.00 0.00 3.86
2064 2139 0.467384 CATGGCCGACTGAAGATCCT 59.533 55.000 0.00 0.00 0.00 3.24
2065 2140 0.179000 ACATGGCCGACTGAAGATCC 59.821 55.000 0.00 0.00 0.00 3.36
2066 2141 2.101582 AGTACATGGCCGACTGAAGATC 59.898 50.000 0.00 0.00 0.00 2.75
2067 2142 2.111384 AGTACATGGCCGACTGAAGAT 58.889 47.619 0.00 0.00 0.00 2.40
2068 2143 1.557099 AGTACATGGCCGACTGAAGA 58.443 50.000 0.00 0.00 0.00 2.87
2069 2144 2.794981 CGTAGTACATGGCCGACTGAAG 60.795 54.545 0.00 0.00 0.00 3.02
2070 2145 1.133598 CGTAGTACATGGCCGACTGAA 59.866 52.381 0.00 0.00 0.00 3.02
2071 2146 0.736636 CGTAGTACATGGCCGACTGA 59.263 55.000 0.00 0.00 0.00 3.41
2072 2147 0.870307 GCGTAGTACATGGCCGACTG 60.870 60.000 0.00 0.00 0.00 3.51
2073 2148 1.436336 GCGTAGTACATGGCCGACT 59.564 57.895 0.00 1.09 0.00 4.18
2074 2149 1.590792 GGCGTAGTACATGGCCGAC 60.591 63.158 0.00 0.00 35.59 4.79
2075 2150 2.809706 GGCGTAGTACATGGCCGA 59.190 61.111 0.00 0.00 35.59 5.54
2078 2153 2.965462 GCGGGCGTAGTACATGGC 60.965 66.667 0.00 0.00 37.99 4.40
2079 2154 2.657296 CGCGGGCGTAGTACATGG 60.657 66.667 4.64 0.00 34.35 3.66
2080 2155 3.327754 GCGCGGGCGTAGTACATG 61.328 66.667 9.31 0.00 42.09 3.21
2118 2193 1.826921 GGTGATGCCTGCTGGATGG 60.827 63.158 14.77 0.00 34.57 3.51
2119 2194 2.184830 CGGTGATGCCTGCTGGATG 61.185 63.158 14.77 0.00 34.57 3.51
2120 2195 2.191375 CGGTGATGCCTGCTGGAT 59.809 61.111 14.77 4.11 34.57 3.41
2121 2196 3.315142 GACGGTGATGCCTGCTGGA 62.315 63.158 14.77 0.00 34.57 3.86
2122 2197 2.821366 GACGGTGATGCCTGCTGG 60.821 66.667 5.03 5.03 34.25 4.85
2123 2198 2.821366 GGACGGTGATGCCTGCTG 60.821 66.667 0.00 0.00 34.25 4.41
2124 2199 4.101448 GGGACGGTGATGCCTGCT 62.101 66.667 0.00 0.00 34.25 4.24
2230 2305 2.438434 GTGAGCCGGTGGAATGGG 60.438 66.667 1.90 0.00 0.00 4.00
2231 2306 2.438434 GGTGAGCCGGTGGAATGG 60.438 66.667 1.90 0.00 0.00 3.16
2232 2307 1.450312 GAGGTGAGCCGGTGGAATG 60.450 63.158 1.90 0.00 40.50 2.67
2233 2308 1.903877 CTGAGGTGAGCCGGTGGAAT 61.904 60.000 1.90 0.00 40.50 3.01
2234 2309 2.525629 TGAGGTGAGCCGGTGGAA 60.526 61.111 1.90 0.00 40.50 3.53
2235 2310 2.997315 CTGAGGTGAGCCGGTGGA 60.997 66.667 1.90 0.00 40.50 4.02
2236 2311 4.767255 GCTGAGGTGAGCCGGTGG 62.767 72.222 1.90 0.00 40.50 4.61
2272 2347 2.912025 AAGCACAACCCTTGGCGG 60.912 61.111 0.00 0.00 33.78 6.13
2273 2348 1.733402 TTGAAGCACAACCCTTGGCG 61.733 55.000 0.00 0.00 33.18 5.69
2274 2349 2.123409 TTGAAGCACAACCCTTGGC 58.877 52.632 0.00 0.00 33.18 4.52
2282 2357 1.063912 CTTGTCGCAGTTGAAGCACAA 59.936 47.619 0.00 0.00 34.41 3.33
2283 2358 0.657312 CTTGTCGCAGTTGAAGCACA 59.343 50.000 0.00 0.00 0.00 4.57
2284 2359 0.658536 GCTTGTCGCAGTTGAAGCAC 60.659 55.000 0.00 0.00 40.47 4.40
2285 2360 1.648720 GCTTGTCGCAGTTGAAGCA 59.351 52.632 0.00 0.00 40.47 3.91
2286 2361 4.522460 GCTTGTCGCAGTTGAAGC 57.478 55.556 0.00 0.00 38.92 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.