Multiple sequence alignment - TraesCS3B01G260000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G260000 chr3B 100.000 7670 0 0 1 7670 417735404 417727735 0.000000e+00 14164.0
1 TraesCS3B01G260000 chr3B 83.557 298 42 5 4715 5009 565726873 565726580 9.810000e-69 272.0
2 TraesCS3B01G260000 chr3B 88.830 188 21 0 5716 5903 637619602 637619789 1.660000e-56 231.0
3 TraesCS3B01G260000 chr3B 90.741 108 10 0 5204 5311 637060892 637060999 2.230000e-30 145.0
4 TraesCS3B01G260000 chr3A 97.027 1783 48 4 2686 4466 430794948 430793169 0.000000e+00 2994.0
5 TraesCS3B01G260000 chr3A 92.015 1102 51 12 5900 6985 430792157 430791077 0.000000e+00 1513.0
6 TraesCS3B01G260000 chr3A 93.348 887 40 7 1513 2398 430796350 430795482 0.000000e+00 1293.0
7 TraesCS3B01G260000 chr3A 90.366 737 26 20 129 864 430798041 430797349 0.000000e+00 926.0
8 TraesCS3B01G260000 chr3A 88.742 604 45 8 916 1497 430796931 430796329 0.000000e+00 717.0
9 TraesCS3B01G260000 chr3A 86.587 671 52 10 5071 5720 430792804 430792151 0.000000e+00 706.0
10 TraesCS3B01G260000 chr3A 87.671 584 34 14 7111 7668 430790749 430790178 0.000000e+00 645.0
11 TraesCS3B01G260000 chr3A 94.161 274 15 1 2397 2670 430795400 430795128 4.280000e-112 416.0
12 TraesCS3B01G260000 chr3A 77.741 301 57 9 4716 5009 12328838 12329135 7.910000e-40 176.0
13 TraesCS3B01G260000 chr3A 78.764 259 36 16 5204 5460 621212889 621213130 1.030000e-33 156.0
14 TraesCS3B01G260000 chr3A 83.333 102 13 4 7024 7123 688195164 688195263 2.950000e-14 91.6
15 TraesCS3B01G260000 chr3A 83.333 102 13 4 7024 7123 688227914 688228013 2.950000e-14 91.6
16 TraesCS3B01G260000 chr3A 100.000 29 0 0 4500 4528 316666950 316666978 4.000000e-03 54.7
17 TraesCS3B01G260000 chr3D 95.056 1861 63 12 2671 4512 303578854 303580704 0.000000e+00 2900.0
18 TraesCS3B01G260000 chr3D 93.894 1343 60 10 171 1499 303576360 303577694 0.000000e+00 2006.0
19 TraesCS3B01G260000 chr3D 93.863 1157 48 11 1515 2670 303577672 303578806 0.000000e+00 1722.0
20 TraesCS3B01G260000 chr3D 94.281 647 33 4 6270 6914 303582603 303583247 0.000000e+00 987.0
21 TraesCS3B01G260000 chr3D 87.883 685 42 19 6996 7666 303583353 303584010 0.000000e+00 767.0
22 TraesCS3B01G260000 chr3D 85.940 633 37 17 5011 5592 303580691 303581322 5.050000e-176 628.0
23 TraesCS3B01G260000 chr3D 95.714 280 12 0 5992 6271 303581569 303581848 1.170000e-122 451.0
24 TraesCS3B01G260000 chr3D 86.802 197 22 4 5716 5911 427077323 427077516 4.660000e-52 217.0
25 TraesCS3B01G260000 chr3D 78.378 259 34 17 5204 5460 477878293 477878531 1.720000e-31 148.0
26 TraesCS3B01G260000 chr3D 83.465 127 17 4 6999 7122 104031526 104031401 1.750000e-21 115.0
27 TraesCS3B01G260000 chr3D 95.588 68 3 0 5603 5670 303581411 303581478 8.140000e-20 110.0
28 TraesCS3B01G260000 chr3D 95.652 69 1 2 5896 5964 303581504 303581570 8.140000e-20 110.0
29 TraesCS3B01G260000 chr3D 86.022 93 11 2 7017 7107 37995122 37995214 1.760000e-16 99.0
30 TraesCS3B01G260000 chr3D 91.045 67 4 2 5537 5601 303581388 303581322 1.060000e-13 89.8
31 TraesCS3B01G260000 chr3D 95.745 47 2 0 6936 6982 303583250 303583296 8.250000e-10 76.8
32 TraesCS3B01G260000 chr3D 100.000 29 0 0 4500 4528 200388968 200388940 4.000000e-03 54.7
33 TraesCS3B01G260000 chr1A 85.444 529 43 12 4505 5009 481926802 481927320 3.170000e-143 520.0
34 TraesCS3B01G260000 chr1A 80.455 220 22 5 5260 5459 213232027 213231809 1.720000e-31 148.0
35 TraesCS3B01G260000 chr1A 93.023 43 2 1 4501 4542 248875308 248875350 2.310000e-05 62.1
36 TraesCS3B01G260000 chr2D 79.291 536 77 17 4499 5009 430508749 430508223 2.050000e-90 344.0
37 TraesCS3B01G260000 chr2D 89.730 185 19 0 5717 5901 250618411 250618595 3.580000e-58 237.0
38 TraesCS3B01G260000 chr2D 85.000 120 16 2 6999 7116 643786194 643786313 3.760000e-23 121.0
39 TraesCS3B01G260000 chr6B 82.184 348 39 10 4666 5013 35627968 35627644 2.110000e-70 278.0
40 TraesCS3B01G260000 chr6B 82.333 300 49 3 4711 5009 54892643 54892939 2.750000e-64 257.0
41 TraesCS3B01G260000 chr6B 83.673 245 30 2 5204 5438 446848073 446847829 1.000000e-53 222.0
42 TraesCS3B01G260000 chr6B 90.741 54 4 1 5332 5385 192986100 192986152 3.840000e-08 71.3
43 TraesCS3B01G260000 chr6B 91.304 46 4 0 5415 5460 454501191 454501146 6.430000e-06 63.9
44 TraesCS3B01G260000 chr6B 85.246 61 5 3 4496 4552 477862681 477862621 8.310000e-05 60.2
45 TraesCS3B01G260000 chr6B 89.130 46 3 2 4501 4544 26023114 26023159 1.000000e-03 56.5
46 TraesCS3B01G260000 chr7D 91.579 190 14 2 5717 5905 588691059 588690871 2.120000e-65 261.0
47 TraesCS3B01G260000 chr7D 77.578 223 26 7 5261 5461 506138478 506138258 6.290000e-21 113.0
48 TraesCS3B01G260000 chr5A 76.667 510 85 27 4529 5009 488441124 488440620 1.280000e-62 252.0
49 TraesCS3B01G260000 chr5A 82.787 122 18 3 6997 7116 169291181 169291301 1.050000e-18 106.0
50 TraesCS3B01G260000 chr5D 90.449 178 14 3 5708 5883 7616620 7616444 1.660000e-56 231.0
51 TraesCS3B01G260000 chr5B 88.360 189 19 3 5716 5903 270633757 270633571 2.790000e-54 224.0
52 TraesCS3B01G260000 chr5B 87.302 189 23 1 5717 5905 493532530 493532343 1.680000e-51 215.0
53 TraesCS3B01G260000 chr5B 75.451 277 46 9 5204 5461 589979136 589979409 1.750000e-21 115.0
54 TraesCS3B01G260000 chr5B 76.018 221 30 7 5262 5461 668127399 668127617 8.200000e-15 93.5
55 TraesCS3B01G260000 chr4D 88.950 181 20 0 5716 5896 282356445 282356265 2.790000e-54 224.0
56 TraesCS3B01G260000 chr4D 76.724 232 29 8 5260 5470 61860641 61860414 1.050000e-18 106.0
57 TraesCS3B01G260000 chr7A 78.068 383 57 17 4623 4984 657012827 657012451 4.660000e-52 217.0
58 TraesCS3B01G260000 chr7A 82.258 124 18 4 7002 7122 27883591 27883469 3.790000e-18 104.0
59 TraesCS3B01G260000 chr6D 87.234 188 24 0 5716 5903 433031166 433031353 1.680000e-51 215.0
60 TraesCS3B01G260000 chr6D 78.067 269 35 12 5204 5459 285881330 285881073 1.720000e-31 148.0
61 TraesCS3B01G260000 chr6D 80.100 201 21 2 5279 5460 277671467 277671267 1.740000e-26 132.0
62 TraesCS3B01G260000 chr7B 80.870 230 43 1 4781 5009 603945448 603945219 6.120000e-41 180.0
63 TraesCS3B01G260000 chr7B 81.513 119 13 3 5276 5385 378342039 378341921 1.060000e-13 89.8
64 TraesCS3B01G260000 chr7B 75.661 189 28 5 5204 5383 513954123 513954302 2.290000e-10 78.7
65 TraesCS3B01G260000 chr2B 82.759 174 27 3 4824 4997 701493283 701493453 1.330000e-32 152.0
66 TraesCS3B01G260000 chr2B 82.400 125 18 4 6997 7118 196255581 196255458 1.050000e-18 106.0
67 TraesCS3B01G260000 chr2B 87.209 86 8 3 5072 5156 17069260 17069343 2.280000e-15 95.3
68 TraesCS3B01G260000 chr2B 86.076 79 9 2 5070 5147 75712831 75712754 4.930000e-12 84.2
69 TraesCS3B01G260000 chr2B 94.737 38 2 0 5204 5241 695598318 695598281 8.310000e-05 60.2
70 TraesCS3B01G260000 chr1D 80.645 217 23 4 5258 5455 178459028 178459244 4.790000e-32 150.0
71 TraesCS3B01G260000 chr1D 79.487 156 21 3 5314 5459 174057097 174056943 4.900000e-17 100.0
72 TraesCS3B01G260000 chr1D 80.519 77 13 2 4501 4576 3378612 3378687 2.990000e-04 58.4
73 TraesCS3B01G260000 chr4B 76.642 274 42 5 5206 5460 395997492 395997762 1.740000e-26 132.0
74 TraesCS3B01G260000 chr4B 100.000 29 0 0 4500 4528 595238318 595238346 4.000000e-03 54.7
75 TraesCS3B01G260000 chr1B 88.889 99 10 1 5198 5296 392115840 392115937 3.760000e-23 121.0
76 TraesCS3B01G260000 chr1B 83.036 112 15 4 6997 7105 427773055 427773165 1.760000e-16 99.0
77 TraesCS3B01G260000 chrUn 100.000 28 0 0 4501 4528 313033758 313033731 1.400000e-02 52.8
78 TraesCS3B01G260000 chrUn 100.000 28 0 0 4501 4528 313037553 313037526 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G260000 chr3B 417727735 417735404 7669 True 14164.00 14164 100.000000 1 7670 1 chr3B.!!$R1 7669
1 TraesCS3B01G260000 chr3A 430790178 430798041 7863 True 1151.25 2994 91.239625 129 7668 8 chr3A.!!$R1 7539
2 TraesCS3B01G260000 chr3D 303576360 303584010 7650 False 975.78 2900 93.361600 171 7666 10 chr3D.!!$F4 7495
3 TraesCS3B01G260000 chr1A 481926802 481927320 518 False 520.00 520 85.444000 4505 5009 1 chr1A.!!$F2 504
4 TraesCS3B01G260000 chr2D 430508223 430508749 526 True 344.00 344 79.291000 4499 5009 1 chr2D.!!$R1 510
5 TraesCS3B01G260000 chr5A 488440620 488441124 504 True 252.00 252 76.667000 4529 5009 1 chr5A.!!$R1 480

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 1353 0.179000 GGGGGATACTGAGTGCTGTG 59.821 60.000 0.00 0.0 0.0 3.66 F
1107 1482 0.392998 AATGTCGCCAAGATTCGCCT 60.393 50.000 0.00 0.0 0.0 5.52 F
1476 1880 0.756903 TACGAAATAGGGAGCAGGGC 59.243 55.000 0.00 0.0 0.0 5.19 F
2662 3151 0.905809 TAGTGCCCTCCCTGCGTAAA 60.906 55.000 0.00 0.0 0.0 2.01 F
3626 4303 1.001641 GACCACATGAGCAAGCCCT 60.002 57.895 0.00 0.0 0.0 5.19 F
3948 4626 0.244721 GGCCTGCCTTGTTCATTGTC 59.755 55.000 0.00 0.0 0.0 3.18 F
5407 6185 0.535328 GGGCTCCCGGAAAAGATAGC 60.535 60.000 0.73 0.0 0.0 2.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1906 2311 0.108472 CTCGCTCTGTTGATGCTGGA 60.108 55.000 0.00 0.0 0.00 3.86 R
2040 2445 3.118992 TCCACGAAGATCAGATTGACAGG 60.119 47.826 0.00 0.0 0.00 4.00 R
3451 4128 2.396160 GCGCAAAGCTGGAATGATAG 57.604 50.000 0.30 0.0 44.04 2.08 R
3838 4515 0.031178 CTGCAGTTGTGTTTGCCTCC 59.969 55.000 5.25 0.0 39.54 4.30 R
5189 5948 0.039035 GTTACATCCAGGTTGGGCCA 59.961 55.000 0.00 0.0 38.32 5.36 R
5730 6588 0.036294 ACTTCCCCTAAGCGTCTTGC 60.036 55.000 2.86 0.0 46.98 4.01 R
7381 9253 0.109723 CCACCTTCCTTCGGTCCAAA 59.890 55.000 0.00 0.0 30.82 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.857871 TGAACTTGTCTTGACGAACTTG 57.142 40.909 0.00 0.00 0.00 3.16
23 24 4.500127 TGAACTTGTCTTGACGAACTTGA 58.500 39.130 0.00 0.00 0.00 3.02
24 25 5.116180 TGAACTTGTCTTGACGAACTTGAT 58.884 37.500 0.00 0.00 0.00 2.57
25 26 6.277605 TGAACTTGTCTTGACGAACTTGATA 58.722 36.000 0.00 0.00 0.00 2.15
26 27 6.759356 TGAACTTGTCTTGACGAACTTGATAA 59.241 34.615 0.00 0.00 0.00 1.75
27 28 7.279090 TGAACTTGTCTTGACGAACTTGATAAA 59.721 33.333 0.00 0.00 0.00 1.40
28 29 7.730364 ACTTGTCTTGACGAACTTGATAAAT 57.270 32.000 0.00 0.00 0.00 1.40
29 30 8.827177 ACTTGTCTTGACGAACTTGATAAATA 57.173 30.769 0.00 0.00 0.00 1.40
30 31 9.436957 ACTTGTCTTGACGAACTTGATAAATAT 57.563 29.630 0.00 0.00 0.00 1.28
31 32 9.694520 CTTGTCTTGACGAACTTGATAAATATG 57.305 33.333 0.00 0.00 0.00 1.78
32 33 8.771920 TGTCTTGACGAACTTGATAAATATGT 57.228 30.769 0.00 0.00 0.00 2.29
33 34 8.655970 TGTCTTGACGAACTTGATAAATATGTG 58.344 33.333 0.00 0.00 0.00 3.21
34 35 7.636359 GTCTTGACGAACTTGATAAATATGTGC 59.364 37.037 0.00 0.00 0.00 4.57
35 36 7.549134 TCTTGACGAACTTGATAAATATGTGCT 59.451 33.333 0.00 0.00 0.00 4.40
36 37 7.609760 TGACGAACTTGATAAATATGTGCTT 57.390 32.000 0.00 0.00 0.00 3.91
37 38 8.710835 TGACGAACTTGATAAATATGTGCTTA 57.289 30.769 0.00 0.00 0.00 3.09
38 39 9.325198 TGACGAACTTGATAAATATGTGCTTAT 57.675 29.630 0.00 0.00 0.00 1.73
54 55 7.546778 TGTGCTTATTATTGTATTTGCGAGA 57.453 32.000 0.00 0.00 0.00 4.04
55 56 7.980062 TGTGCTTATTATTGTATTTGCGAGAA 58.020 30.769 0.00 0.00 0.00 2.87
56 57 8.454894 TGTGCTTATTATTGTATTTGCGAGAAA 58.545 29.630 0.00 0.00 0.00 2.52
57 58 8.947940 GTGCTTATTATTGTATTTGCGAGAAAG 58.052 33.333 0.00 0.00 0.00 2.62
58 59 7.643764 TGCTTATTATTGTATTTGCGAGAAAGC 59.356 33.333 0.00 0.00 37.71 3.51
59 60 7.149288 GCTTATTATTGTATTTGCGAGAAAGCG 60.149 37.037 0.00 0.00 40.67 4.68
60 61 5.788055 TTATTGTATTTGCGAGAAAGCGA 57.212 34.783 0.00 0.00 40.67 4.93
61 62 3.722555 TTGTATTTGCGAGAAAGCGAG 57.277 42.857 0.00 0.00 40.67 5.03
62 63 1.393539 TGTATTTGCGAGAAAGCGAGC 59.606 47.619 0.00 0.00 40.67 5.03
63 64 1.006832 TATTTGCGAGAAAGCGAGCC 58.993 50.000 0.00 0.00 40.67 4.70
64 65 1.648467 ATTTGCGAGAAAGCGAGCCC 61.648 55.000 0.00 0.00 40.67 5.19
65 66 2.731691 TTTGCGAGAAAGCGAGCCCT 62.732 55.000 0.00 0.00 40.67 5.19
66 67 2.888051 GCGAGAAAGCGAGCCCTC 60.888 66.667 0.00 0.00 0.00 4.30
67 68 2.202810 CGAGAAAGCGAGCCCTCC 60.203 66.667 0.00 0.00 0.00 4.30
68 69 2.982130 GAGAAAGCGAGCCCTCCA 59.018 61.111 0.00 0.00 0.00 3.86
69 70 1.296715 GAGAAAGCGAGCCCTCCAA 59.703 57.895 0.00 0.00 0.00 3.53
70 71 1.003233 AGAAAGCGAGCCCTCCAAC 60.003 57.895 0.00 0.00 0.00 3.77
71 72 1.302511 GAAAGCGAGCCCTCCAACA 60.303 57.895 0.00 0.00 0.00 3.33
72 73 1.578206 GAAAGCGAGCCCTCCAACAC 61.578 60.000 0.00 0.00 0.00 3.32
73 74 3.883744 AAGCGAGCCCTCCAACACG 62.884 63.158 0.00 0.00 0.00 4.49
74 75 4.373116 GCGAGCCCTCCAACACGA 62.373 66.667 0.00 0.00 0.00 4.35
75 76 2.342279 CGAGCCCTCCAACACGAA 59.658 61.111 0.00 0.00 0.00 3.85
76 77 1.301401 CGAGCCCTCCAACACGAAA 60.301 57.895 0.00 0.00 0.00 3.46
77 78 0.673644 CGAGCCCTCCAACACGAAAT 60.674 55.000 0.00 0.00 0.00 2.17
78 79 1.404986 CGAGCCCTCCAACACGAAATA 60.405 52.381 0.00 0.00 0.00 1.40
79 80 2.280628 GAGCCCTCCAACACGAAATAG 58.719 52.381 0.00 0.00 0.00 1.73
80 81 1.906574 AGCCCTCCAACACGAAATAGA 59.093 47.619 0.00 0.00 0.00 1.98
81 82 2.505819 AGCCCTCCAACACGAAATAGAT 59.494 45.455 0.00 0.00 0.00 1.98
82 83 2.872858 GCCCTCCAACACGAAATAGATC 59.127 50.000 0.00 0.00 0.00 2.75
83 84 3.467803 CCCTCCAACACGAAATAGATCC 58.532 50.000 0.00 0.00 0.00 3.36
84 85 3.467803 CCTCCAACACGAAATAGATCCC 58.532 50.000 0.00 0.00 0.00 3.85
85 86 3.123804 CTCCAACACGAAATAGATCCCG 58.876 50.000 0.00 0.00 0.00 5.14
86 87 1.597663 CCAACACGAAATAGATCCCGC 59.402 52.381 0.00 0.00 0.00 6.13
87 88 2.276201 CAACACGAAATAGATCCCGCA 58.724 47.619 0.00 0.00 0.00 5.69
88 89 2.675844 CAACACGAAATAGATCCCGCAA 59.324 45.455 0.00 0.00 0.00 4.85
89 90 2.980568 ACACGAAATAGATCCCGCAAA 58.019 42.857 0.00 0.00 0.00 3.68
90 91 2.676342 ACACGAAATAGATCCCGCAAAC 59.324 45.455 0.00 0.00 0.00 2.93
91 92 1.931172 ACGAAATAGATCCCGCAAACG 59.069 47.619 0.00 0.00 39.67 3.60
92 93 1.332904 CGAAATAGATCCCGCAAACGC 60.333 52.381 0.00 0.00 38.22 4.84
107 108 3.249999 CGCGTCCCGTGAAACATT 58.750 55.556 0.00 0.00 39.94 2.71
108 109 1.572447 CGCGTCCCGTGAAACATTT 59.428 52.632 0.00 0.00 39.94 2.32
109 110 0.724453 CGCGTCCCGTGAAACATTTG 60.724 55.000 0.00 0.00 39.94 2.32
110 111 0.309612 GCGTCCCGTGAAACATTTGT 59.690 50.000 0.00 0.00 35.74 2.83
111 112 1.532007 GCGTCCCGTGAAACATTTGTA 59.468 47.619 0.00 0.00 35.74 2.41
112 113 2.031857 GCGTCCCGTGAAACATTTGTAA 60.032 45.455 0.00 0.00 35.74 2.41
113 114 3.548415 GCGTCCCGTGAAACATTTGTAAA 60.548 43.478 0.00 0.00 35.74 2.01
114 115 4.789784 CGTCCCGTGAAACATTTGTAAAT 58.210 39.130 0.00 0.00 35.74 1.40
115 116 5.617308 GCGTCCCGTGAAACATTTGTAAATA 60.617 40.000 0.00 0.00 35.74 1.40
116 117 6.019152 CGTCCCGTGAAACATTTGTAAATAG 58.981 40.000 0.00 0.00 35.74 1.73
117 118 6.128499 CGTCCCGTGAAACATTTGTAAATAGA 60.128 38.462 0.00 0.00 35.74 1.98
118 119 7.413657 CGTCCCGTGAAACATTTGTAAATAGAT 60.414 37.037 0.00 0.00 35.74 1.98
119 120 7.908601 GTCCCGTGAAACATTTGTAAATAGATC 59.091 37.037 0.00 0.00 35.74 2.75
120 121 6.905076 CCCGTGAAACATTTGTAAATAGATCG 59.095 38.462 0.00 0.00 35.74 3.69
121 122 7.201574 CCCGTGAAACATTTGTAAATAGATCGA 60.202 37.037 0.00 0.00 35.74 3.59
122 123 8.172484 CCGTGAAACATTTGTAAATAGATCGAA 58.828 33.333 0.00 0.00 35.74 3.71
123 124 9.536558 CGTGAAACATTTGTAAATAGATCGAAA 57.463 29.630 0.00 0.00 35.74 3.46
161 162 4.377708 ATCTGGCGTCGCACTGCA 62.378 61.111 20.50 6.64 0.00 4.41
165 166 4.724602 GGCGTCGCACTGCAGAGA 62.725 66.667 23.35 13.66 0.00 3.10
166 167 3.177920 GCGTCGCACTGCAGAGAG 61.178 66.667 23.35 15.28 0.00 3.20
268 269 7.027161 TCGGTCACAGAAAAAGAAAAGAAAAG 58.973 34.615 0.00 0.00 0.00 2.27
269 270 7.027161 CGGTCACAGAAAAAGAAAAGAAAAGA 58.973 34.615 0.00 0.00 0.00 2.52
274 275 9.423061 CACAGAAAAAGAAAAGAAAAGAAAGGA 57.577 29.630 0.00 0.00 0.00 3.36
290 291 2.702270 AGGAAAAAGGGGCATCTTGT 57.298 45.000 0.00 0.00 0.00 3.16
293 294 2.029020 GGAAAAAGGGGCATCTTGTCAC 60.029 50.000 0.00 0.00 0.00 3.67
312 313 2.976494 CTTGGCACCACGGAACCCTT 62.976 60.000 0.00 0.00 0.00 3.95
325 326 2.415893 GGAACCCTTCAATGTTGCGATG 60.416 50.000 0.00 0.00 0.00 3.84
349 350 1.100510 CCCTGAACTGTCCGTCGATA 58.899 55.000 0.00 0.00 0.00 2.92
382 383 2.954753 GCACTGGTCGCTTTCGTGG 61.955 63.158 0.00 0.00 36.96 4.94
391 392 3.353836 CTTTCGTGGCGTGTGGGG 61.354 66.667 0.00 0.00 0.00 4.96
446 452 3.132925 GCCTGCATTGCAAAAGAAAAGA 58.867 40.909 13.18 0.00 38.41 2.52
447 453 3.560896 GCCTGCATTGCAAAAGAAAAGAA 59.439 39.130 13.18 0.00 38.41 2.52
448 454 4.035441 GCCTGCATTGCAAAAGAAAAGAAA 59.965 37.500 13.18 0.00 38.41 2.52
449 455 5.448904 GCCTGCATTGCAAAAGAAAAGAAAA 60.449 36.000 13.18 0.00 38.41 2.29
450 456 6.196571 CCTGCATTGCAAAAGAAAAGAAAAG 58.803 36.000 13.18 0.00 38.41 2.27
451 457 6.037391 CCTGCATTGCAAAAGAAAAGAAAAGA 59.963 34.615 13.18 0.00 38.41 2.52
452 458 7.375106 TGCATTGCAAAAGAAAAGAAAAGAA 57.625 28.000 9.33 0.00 34.76 2.52
453 459 7.814642 TGCATTGCAAAAGAAAAGAAAAGAAA 58.185 26.923 9.33 0.00 34.76 2.52
506 512 2.533974 GAAGGAGACAGCAGGCAGGG 62.534 65.000 0.00 0.00 0.00 4.45
529 535 1.828595 GGGGTCAGTCTTCTTCCTCTC 59.171 57.143 0.00 0.00 0.00 3.20
721 730 2.107903 GCTGCTGCCTCTGCTTCTC 61.108 63.158 3.85 0.00 38.71 2.87
722 731 1.295746 CTGCTGCCTCTGCTTCTCA 59.704 57.895 0.00 0.00 38.71 3.27
724 733 1.744741 GCTGCCTCTGCTTCTCACC 60.745 63.158 0.00 0.00 38.71 4.02
725 734 1.675801 CTGCCTCTGCTTCTCACCA 59.324 57.895 0.00 0.00 38.71 4.17
726 735 0.391395 CTGCCTCTGCTTCTCACCAG 60.391 60.000 0.00 0.00 38.71 4.00
727 736 1.123861 TGCCTCTGCTTCTCACCAGT 61.124 55.000 0.00 0.00 38.71 4.00
759 768 2.569404 ACTCATCTCCCTTGGTGTTCTC 59.431 50.000 0.00 0.00 0.00 2.87
834 843 3.508840 CGATTTGGCTCCCCGCAC 61.509 66.667 0.00 0.00 41.67 5.34
843 852 4.182433 TCCCCGCACTGCACACAA 62.182 61.111 1.11 0.00 0.00 3.33
978 1353 0.179000 GGGGGATACTGAGTGCTGTG 59.821 60.000 0.00 0.00 0.00 3.66
1030 1405 4.985538 TTCGTTAGGGTCTCTCAAGATC 57.014 45.455 0.00 0.00 33.08 2.75
1060 1435 2.760634 TGCGCTCATGTCTTCCTTTA 57.239 45.000 9.73 0.00 0.00 1.85
1096 1471 1.305219 TGTGGCTAAGCAATGTCGCC 61.305 55.000 0.00 0.00 41.06 5.54
1107 1482 0.392998 AATGTCGCCAAGATTCGCCT 60.393 50.000 0.00 0.00 0.00 5.52
1135 1513 5.729229 TCCCCTCAAGTAATTCACCTCATTA 59.271 40.000 0.00 0.00 0.00 1.90
1242 1620 5.072741 CCTTTTGGATTTCACTCCTTGAGA 58.927 41.667 0.00 0.00 44.07 3.27
1277 1662 8.964772 AGCTTGATTAGTTCTATTTCAAATGCT 58.035 29.630 0.00 10.40 0.00 3.79
1289 1674 9.102757 TCTATTTCAAATGCTCAGTAATCAGTC 57.897 33.333 0.00 0.00 0.00 3.51
1292 1677 2.231215 ATGCTCAGTAATCAGTCCGC 57.769 50.000 0.00 0.00 0.00 5.54
1320 1705 3.323691 TGGTCTAGCTGTTTGTGCTTCTA 59.676 43.478 0.00 0.00 41.46 2.10
1321 1706 4.202315 TGGTCTAGCTGTTTGTGCTTCTAA 60.202 41.667 0.00 0.00 41.46 2.10
1342 1727 7.538575 TCTAATTTGTTTCTGCCTATTTGAGC 58.461 34.615 0.00 0.00 0.00 4.26
1348 1733 2.042464 TCTGCCTATTTGAGCGATCCT 58.958 47.619 0.00 0.00 0.00 3.24
1417 1821 4.127171 AGAACATTGTACATACGGCCATC 58.873 43.478 2.24 0.00 0.00 3.51
1440 1844 6.825610 TCAAAGTTGTAAATGGCAAGGAATT 58.174 32.000 0.00 0.00 0.00 2.17
1476 1880 0.756903 TACGAAATAGGGAGCAGGGC 59.243 55.000 0.00 0.00 0.00 5.19
1499 1903 9.435688 GGGCAAAATAATTGAAGTTCTACATTT 57.564 29.630 4.17 4.14 0.00 2.32
1505 1909 5.803020 ATTGAAGTTCTACATTTCCTCGC 57.197 39.130 4.17 0.00 0.00 5.03
1506 1910 4.265904 TGAAGTTCTACATTTCCTCGCA 57.734 40.909 4.17 0.00 0.00 5.10
1507 1911 4.637276 TGAAGTTCTACATTTCCTCGCAA 58.363 39.130 4.17 0.00 0.00 4.85
1508 1912 5.060506 TGAAGTTCTACATTTCCTCGCAAA 58.939 37.500 4.17 0.00 0.00 3.68
1509 1913 5.529430 TGAAGTTCTACATTTCCTCGCAAAA 59.471 36.000 4.17 0.00 0.00 2.44
1510 1914 6.038825 TGAAGTTCTACATTTCCTCGCAAAAA 59.961 34.615 4.17 0.00 0.00 1.94
1686 2091 5.548181 ATCATGTCACTGATATCTGCTGT 57.452 39.130 9.35 0.00 34.11 4.40
1718 2123 9.586435 CACAAACCATCTTCCTTTTATTATTCC 57.414 33.333 0.00 0.00 0.00 3.01
1756 2161 5.125356 TGTGATGGTGACTGCCTTAATATG 58.875 41.667 0.00 0.00 0.00 1.78
1781 2186 4.799715 TTTCTGTCTCCTTTTTGGGGTA 57.200 40.909 0.00 0.00 37.63 3.69
1784 2189 5.431179 TCTGTCTCCTTTTTGGGGTATAC 57.569 43.478 0.00 0.00 37.63 1.47
1872 2277 5.163550 GGTTATAGGGTCCTGATTTTGTTGC 60.164 44.000 0.00 0.00 0.00 4.17
1906 2311 1.696336 TCAGCCAGCTCTTCTCAGTTT 59.304 47.619 0.00 0.00 0.00 2.66
1934 2339 4.362932 TCAACAGAGCGAGAATCTACAG 57.637 45.455 0.00 0.00 0.00 2.74
1987 2392 6.291377 TCCAGGTGATAACAAGCATATTCTC 58.709 40.000 0.00 0.00 0.00 2.87
2035 2440 5.340439 ACACCTAGTAAGTTGTAGCCATC 57.660 43.478 0.00 0.00 0.00 3.51
2040 2445 6.043411 CCTAGTAAGTTGTAGCCATCTTCAC 58.957 44.000 0.00 0.00 33.66 3.18
2337 2742 8.837389 CCACCAGATAACTATTTTTAGGCTTAC 58.163 37.037 0.00 0.00 0.00 2.34
2439 2927 2.707849 CCAAGCCTGCATGCTGGTC 61.708 63.158 35.31 28.16 41.80 4.02
2498 2987 7.430441 TGCCTAATGGAAGTTTAGTTTCAAAC 58.570 34.615 0.00 0.00 35.70 2.93
2572 3061 5.237344 GTGAGAGCAGATTAACACAGTGTTT 59.763 40.000 23.88 7.31 41.45 2.83
2610 3099 4.216257 CCAAAACACCAGTAGTCAAGGATG 59.784 45.833 0.00 0.00 0.00 3.51
2632 3121 4.956700 TGATTGGTCCTTGGTTTTTGTACA 59.043 37.500 0.00 0.00 0.00 2.90
2662 3151 0.905809 TAGTGCCCTCCCTGCGTAAA 60.906 55.000 0.00 0.00 0.00 2.01
2674 3210 4.456566 TCCCTGCGTAAATTGAACTAAACC 59.543 41.667 0.00 0.00 0.00 3.27
2679 3215 5.025826 GCGTAAATTGAACTAAACCATCCG 58.974 41.667 0.00 0.00 0.00 4.18
2775 3436 3.319755 TGCTTTCTTTTAGCTTGCATGC 58.680 40.909 16.37 16.37 39.38 4.06
2995 3669 7.410174 TCTTTATGGGGTCAGTAACATGAAAT 58.590 34.615 0.00 0.00 0.00 2.17
2996 3670 7.556275 TCTTTATGGGGTCAGTAACATGAAATC 59.444 37.037 0.00 0.00 0.00 2.17
3016 3690 8.842280 TGAAATCGAGTGTGGTATTTACTTTTT 58.158 29.630 0.00 0.00 0.00 1.94
3044 3721 2.176247 TCCTCCCACTTCAGATACCC 57.824 55.000 0.00 0.00 0.00 3.69
3506 4183 3.262915 AGCTTAGGCATGATCTCCATACC 59.737 47.826 0.00 0.00 38.70 2.73
3626 4303 1.001641 GACCACATGAGCAAGCCCT 60.002 57.895 0.00 0.00 0.00 5.19
3660 4337 9.950680 CAGTAGTCAAACACAAAATAGAAATGT 57.049 29.630 0.00 0.00 0.00 2.71
3709 4386 5.679734 ACAAGCCGATAAATGCAGAATAG 57.320 39.130 0.00 0.00 0.00 1.73
3948 4626 0.244721 GGCCTGCCTTGTTCATTGTC 59.755 55.000 0.00 0.00 0.00 3.18
3955 4633 5.047802 CCTGCCTTGTTCATTGTCATTAACT 60.048 40.000 0.00 0.00 0.00 2.24
3991 4669 7.093112 TGGCCACTTAACCTTGCATTTATATTT 60.093 33.333 0.00 0.00 0.00 1.40
4062 4740 4.373156 ACTGGCAGGTTAGTTTCTGATT 57.627 40.909 20.34 0.00 33.11 2.57
4200 4883 7.362401 CCAATCAGCTTTTGACAATAGTAAGCT 60.362 37.037 15.83 15.83 44.11 3.74
4267 4950 4.688511 TGTAATGCGTTTGTATTGACCC 57.311 40.909 0.00 0.00 32.36 4.46
4376 5059 1.199615 GGGAAGGAGGACTCAAGGAG 58.800 60.000 1.32 0.00 35.52 3.69
4430 5113 0.539438 TGGTTGTTCCTCATGGCCAC 60.539 55.000 8.16 0.00 37.07 5.01
4471 5154 9.403583 GGATGTCCACAAACTCCTTTAATATAA 57.596 33.333 0.00 0.00 35.64 0.98
4481 5164 6.467708 ACTCCTTTAATATAAGGGAGGGGAA 58.532 40.000 23.86 0.00 44.01 3.97
4491 5174 1.304282 GGAGGGGAAGCTGATTGCA 59.696 57.895 0.00 0.00 45.94 4.08
4493 5176 1.372087 GAGGGGAAGCTGATTGCACG 61.372 60.000 0.00 0.00 45.94 5.34
4501 5184 1.486310 AGCTGATTGCACGGAATCCTA 59.514 47.619 8.56 0.00 45.94 2.94
4523 5206 2.246469 GAGCATCTCTAGCAGATCCCA 58.754 52.381 0.00 0.00 40.20 4.37
4532 5215 6.080682 TCTCTAGCAGATCCCATAAACAGAT 58.919 40.000 0.00 0.00 0.00 2.90
4560 5246 6.691255 TGTAAAAACAGTATACAGGACCCT 57.309 37.500 5.50 0.00 0.00 4.34
4582 5268 6.101997 CCTCTAAAACGAATTTACGGTACCT 58.898 40.000 10.90 0.00 37.61 3.08
4661 5349 4.866508 TTTCTCCTCACGCTTCTTCTTA 57.133 40.909 0.00 0.00 0.00 2.10
4675 5363 1.518056 TTCTTACCCGAGACGCACGT 61.518 55.000 0.00 0.00 0.00 4.49
4742 5464 2.283604 TAGCCTGCTCCGGTGACA 60.284 61.111 7.92 4.19 0.00 3.58
4893 5616 5.084519 TGGATGGAAGCTCTAATATACGGT 58.915 41.667 0.00 0.00 0.00 4.83
4895 5618 6.722590 TGGATGGAAGCTCTAATATACGGTAA 59.277 38.462 0.00 0.00 0.00 2.85
4984 5711 4.040706 ACCGTAAATCTGTAGGTTTGACCA 59.959 41.667 0.50 0.00 41.95 4.02
5009 5736 2.918712 ACGGGATTTGCTAGAGATGG 57.081 50.000 0.00 0.00 0.00 3.51
5035 5762 2.670148 GCATCTCCAACCGGACCCT 61.670 63.158 9.46 0.00 35.91 4.34
5058 5785 4.072131 CCATTTTGTCCCTATATGTCCGG 58.928 47.826 0.00 0.00 0.00 5.14
5094 5821 3.388350 ACAGGAGAGAGAAGGAAAAACGT 59.612 43.478 0.00 0.00 0.00 3.99
5105 5832 0.593008 GAAAAACGTCACCCAACCGC 60.593 55.000 0.00 0.00 0.00 5.68
5119 5846 3.508840 CCGCACCCCTCAAATCGC 61.509 66.667 0.00 0.00 0.00 4.58
5170 5920 0.916086 AATATGAGGGTGTTCGGGCA 59.084 50.000 0.00 0.00 0.00 5.36
5185 5935 2.265739 GCATGTCCGAGCTGTCCA 59.734 61.111 0.00 0.00 0.00 4.02
5189 5948 1.267574 ATGTCCGAGCTGTCCACCAT 61.268 55.000 0.00 0.00 0.00 3.55
5196 5955 2.440147 CTGTCCACCATGGCCCAA 59.560 61.111 13.04 0.00 37.47 4.12
5268 6027 3.663136 TGGCTACCACCTAGGATCTAGAT 59.337 47.826 17.98 4.47 41.22 1.98
5273 6032 3.116551 ACCACCTAGGATCTAGATTGGCT 60.117 47.826 17.98 4.33 41.22 4.75
5300 6059 3.967987 AGACCAACACTAGTCTTTCCTGT 59.032 43.478 0.00 0.00 40.43 4.00
5305 6064 2.700897 ACACTAGTCTTTCCTGTGCACT 59.299 45.455 19.41 0.00 32.49 4.40
5375 6143 1.905922 GCTCCAAGTCAAGCACGCTC 61.906 60.000 0.00 0.00 38.42 5.03
5404 6182 0.631212 AATGGGCTCCCGGAAAAGAT 59.369 50.000 0.73 0.00 39.42 2.40
5405 6183 1.518367 ATGGGCTCCCGGAAAAGATA 58.482 50.000 0.73 0.00 39.42 1.98
5407 6185 0.535328 GGGCTCCCGGAAAAGATAGC 60.535 60.000 0.73 0.00 0.00 2.97
5413 6191 0.742990 CCGGAAAAGATAGCGCACCA 60.743 55.000 11.47 0.00 0.00 4.17
5421 6199 2.216046 AGATAGCGCACCATGTTGATG 58.784 47.619 11.47 0.00 0.00 3.07
5484 6264 6.265422 ACTGGACCACCTTTTCTATTTCTTTG 59.735 38.462 0.00 0.00 37.04 2.77
5556 6336 1.606994 CGGACAATTTGAGGGACACGA 60.607 52.381 2.79 0.00 0.00 4.35
5557 6337 2.711542 GGACAATTTGAGGGACACGAT 58.288 47.619 2.79 0.00 0.00 3.73
5561 6341 2.489329 CAATTTGAGGGACACGATTGCT 59.511 45.455 0.00 0.00 30.90 3.91
5592 6372 1.172180 TTGAGGGTTCAAAGCAGGCG 61.172 55.000 0.00 0.00 40.26 5.52
5595 6375 3.660111 GGTTCAAAGCAGGCGCGT 61.660 61.111 8.43 0.00 45.49 6.01
5694 6552 7.462590 AGTTGAGAAAGGAAATAACTAGGCTT 58.537 34.615 0.00 0.00 0.00 4.35
5729 6587 2.514458 CCTCAAAGGCCCTGTACAAT 57.486 50.000 0.00 0.00 0.00 2.71
5730 6588 2.094675 CCTCAAAGGCCCTGTACAATG 58.905 52.381 0.00 0.00 0.00 2.82
5731 6589 1.474077 CTCAAAGGCCCTGTACAATGC 59.526 52.381 0.00 7.56 0.00 3.56
5732 6590 1.202989 TCAAAGGCCCTGTACAATGCA 60.203 47.619 15.74 0.00 0.00 3.96
5733 6591 1.617850 CAAAGGCCCTGTACAATGCAA 59.382 47.619 15.74 0.00 0.00 4.08
5734 6592 1.549203 AAGGCCCTGTACAATGCAAG 58.451 50.000 15.74 0.00 0.00 4.01
5735 6593 0.698238 AGGCCCTGTACAATGCAAGA 59.302 50.000 15.74 0.00 0.00 3.02
5736 6594 0.811281 GGCCCTGTACAATGCAAGAC 59.189 55.000 15.74 0.00 0.00 3.01
5737 6595 0.447801 GCCCTGTACAATGCAAGACG 59.552 55.000 10.53 0.00 0.00 4.18
5738 6596 0.447801 CCCTGTACAATGCAAGACGC 59.552 55.000 0.00 0.00 42.89 5.19
5739 6597 1.442769 CCTGTACAATGCAAGACGCT 58.557 50.000 0.00 0.00 43.06 5.07
5740 6598 1.806542 CCTGTACAATGCAAGACGCTT 59.193 47.619 0.00 0.00 43.06 4.68
5741 6599 3.000041 CCTGTACAATGCAAGACGCTTA 59.000 45.455 0.00 0.00 43.06 3.09
5742 6600 3.062639 CCTGTACAATGCAAGACGCTTAG 59.937 47.826 0.00 0.00 43.06 2.18
5743 6601 3.000041 TGTACAATGCAAGACGCTTAGG 59.000 45.455 0.00 0.00 43.06 2.69
5744 6602 1.453155 ACAATGCAAGACGCTTAGGG 58.547 50.000 0.00 0.00 43.06 3.53
5745 6603 0.734889 CAATGCAAGACGCTTAGGGG 59.265 55.000 0.55 0.00 43.06 4.79
5746 6604 0.618458 AATGCAAGACGCTTAGGGGA 59.382 50.000 0.55 0.00 43.06 4.81
5747 6605 0.618458 ATGCAAGACGCTTAGGGGAA 59.382 50.000 0.55 0.00 43.06 3.97
5748 6606 0.036388 TGCAAGACGCTTAGGGGAAG 60.036 55.000 0.55 0.00 43.06 3.46
5749 6607 0.036294 GCAAGACGCTTAGGGGAAGT 60.036 55.000 0.55 0.00 37.49 3.01
5755 6613 1.941325 CGCTTAGGGGAAGTGCTTAG 58.059 55.000 0.00 0.00 38.77 2.18
5756 6614 1.480954 CGCTTAGGGGAAGTGCTTAGA 59.519 52.381 0.00 0.00 38.77 2.10
5757 6615 2.103263 CGCTTAGGGGAAGTGCTTAGAT 59.897 50.000 0.00 0.00 38.77 1.98
5758 6616 3.321111 CGCTTAGGGGAAGTGCTTAGATA 59.679 47.826 0.00 0.00 38.77 1.98
5759 6617 4.202223 CGCTTAGGGGAAGTGCTTAGATAA 60.202 45.833 0.00 0.00 38.77 1.75
5760 6618 5.681639 GCTTAGGGGAAGTGCTTAGATAAA 58.318 41.667 0.00 0.00 37.49 1.40
5761 6619 6.299922 GCTTAGGGGAAGTGCTTAGATAAAT 58.700 40.000 0.00 0.00 37.49 1.40
5762 6620 7.450903 GCTTAGGGGAAGTGCTTAGATAAATA 58.549 38.462 0.00 0.00 37.49 1.40
5763 6621 7.937394 GCTTAGGGGAAGTGCTTAGATAAATAA 59.063 37.037 0.00 0.00 37.49 1.40
5764 6622 9.847224 CTTAGGGGAAGTGCTTAGATAAATAAA 57.153 33.333 0.00 0.00 0.00 1.40
5765 6623 9.623000 TTAGGGGAAGTGCTTAGATAAATAAAC 57.377 33.333 0.00 0.00 0.00 2.01
5766 6624 7.061054 AGGGGAAGTGCTTAGATAAATAAACC 58.939 38.462 0.00 0.00 0.00 3.27
5767 6625 6.831868 GGGGAAGTGCTTAGATAAATAAACCA 59.168 38.462 0.00 0.00 0.00 3.67
5768 6626 7.013369 GGGGAAGTGCTTAGATAAATAAACCAG 59.987 40.741 0.00 0.00 0.00 4.00
5769 6627 7.556635 GGGAAGTGCTTAGATAAATAAACCAGT 59.443 37.037 0.00 0.00 0.00 4.00
5770 6628 8.398665 GGAAGTGCTTAGATAAATAAACCAGTG 58.601 37.037 0.00 0.00 0.00 3.66
5771 6629 8.863872 AAGTGCTTAGATAAATAAACCAGTGT 57.136 30.769 0.00 0.00 0.00 3.55
5772 6630 8.863872 AGTGCTTAGATAAATAAACCAGTGTT 57.136 30.769 0.00 0.00 35.82 3.32
5773 6631 9.297037 AGTGCTTAGATAAATAAACCAGTGTTT 57.703 29.630 0.00 0.00 46.22 2.83
5774 6632 9.556030 GTGCTTAGATAAATAAACCAGTGTTTC 57.444 33.333 0.00 0.00 43.50 2.78
5775 6633 9.515226 TGCTTAGATAAATAAACCAGTGTTTCT 57.485 29.630 0.00 0.00 43.50 2.52
5776 6634 9.989869 GCTTAGATAAATAAACCAGTGTTTCTC 57.010 33.333 0.00 0.00 43.50 2.87
5781 6639 9.989869 GATAAATAAACCAGTGTTTCTCTAAGC 57.010 33.333 0.00 0.00 43.50 3.09
5782 6640 7.817418 AAATAAACCAGTGTTTCTCTAAGCA 57.183 32.000 0.00 0.00 43.50 3.91
5783 6641 6.803154 ATAAACCAGTGTTTCTCTAAGCAC 57.197 37.500 0.00 0.00 43.50 4.40
5784 6642 3.127425 ACCAGTGTTTCTCTAAGCACC 57.873 47.619 2.10 0.00 45.12 5.01
5785 6643 2.069273 CCAGTGTTTCTCTAAGCACCG 58.931 52.381 2.10 0.00 45.12 4.94
5786 6644 2.069273 CAGTGTTTCTCTAAGCACCGG 58.931 52.381 0.00 0.00 45.12 5.28
5787 6645 1.692519 AGTGTTTCTCTAAGCACCGGT 59.307 47.619 0.00 0.00 45.12 5.28
5788 6646 1.798813 GTGTTTCTCTAAGCACCGGTG 59.201 52.381 30.66 30.66 39.99 4.94
5801 6659 3.740044 CACCGGTGCTTATTTGTACAG 57.260 47.619 24.02 0.00 0.00 2.74
5802 6660 2.418628 CACCGGTGCTTATTTGTACAGG 59.581 50.000 24.02 0.00 41.71 4.00
5803 6661 2.014128 CCGGTGCTTATTTGTACAGGG 58.986 52.381 0.00 0.00 35.20 4.45
5804 6662 2.617021 CCGGTGCTTATTTGTACAGGGT 60.617 50.000 0.00 0.00 35.20 4.34
5805 6663 3.369681 CCGGTGCTTATTTGTACAGGGTA 60.370 47.826 0.00 0.00 35.20 3.69
5806 6664 3.869246 CGGTGCTTATTTGTACAGGGTAG 59.131 47.826 0.00 0.00 0.00 3.18
5807 6665 4.382254 CGGTGCTTATTTGTACAGGGTAGA 60.382 45.833 0.00 0.00 0.00 2.59
5808 6666 4.874396 GGTGCTTATTTGTACAGGGTAGAC 59.126 45.833 0.00 0.00 0.00 2.59
5809 6667 4.565564 GTGCTTATTTGTACAGGGTAGACG 59.434 45.833 0.00 0.00 0.00 4.18
5810 6668 3.554731 GCTTATTTGTACAGGGTAGACGC 59.445 47.826 0.00 0.00 0.00 5.19
5811 6669 4.679905 GCTTATTTGTACAGGGTAGACGCT 60.680 45.833 0.00 0.00 39.95 5.07
5812 6670 3.975168 ATTTGTACAGGGTAGACGCTT 57.025 42.857 0.00 0.00 37.00 4.68
5813 6671 6.528537 TTATTTGTACAGGGTAGACGCTTA 57.471 37.500 0.00 0.00 37.00 3.09
5814 6672 4.870123 TTTGTACAGGGTAGACGCTTAA 57.130 40.909 0.00 0.00 37.00 1.85
5815 6673 5.410355 TTTGTACAGGGTAGACGCTTAAT 57.590 39.130 0.00 0.00 37.00 1.40
5816 6674 5.410355 TTGTACAGGGTAGACGCTTAATT 57.590 39.130 0.00 0.00 37.00 1.40
5817 6675 6.528537 TTGTACAGGGTAGACGCTTAATTA 57.471 37.500 0.00 0.00 37.00 1.40
5818 6676 6.140303 TGTACAGGGTAGACGCTTAATTAG 57.860 41.667 0.00 0.00 37.00 1.73
5819 6677 4.667519 ACAGGGTAGACGCTTAATTAGG 57.332 45.455 0.00 0.00 37.00 2.69
5820 6678 3.181468 ACAGGGTAGACGCTTAATTAGGC 60.181 47.826 9.43 9.43 37.00 3.93
5828 6686 2.395654 CGCTTAATTAGGCGTCTCTCC 58.604 52.381 28.00 0.00 45.15 3.71
5829 6687 2.034812 CGCTTAATTAGGCGTCTCTCCT 59.965 50.000 28.00 0.00 45.15 3.69
5830 6688 3.252701 CGCTTAATTAGGCGTCTCTCCTA 59.747 47.826 28.00 0.00 45.15 2.94
5831 6689 4.082679 CGCTTAATTAGGCGTCTCTCCTAT 60.083 45.833 28.00 0.00 45.15 2.57
5832 6690 5.123502 CGCTTAATTAGGCGTCTCTCCTATA 59.876 44.000 28.00 0.00 45.15 1.31
5833 6691 6.324042 GCTTAATTAGGCGTCTCTCCTATAC 58.676 44.000 3.59 0.00 36.20 1.47
5834 6692 6.072064 GCTTAATTAGGCGTCTCTCCTATACA 60.072 42.308 3.59 0.00 36.20 2.29
5835 6693 7.523380 GCTTAATTAGGCGTCTCTCCTATACAA 60.523 40.741 3.59 0.00 36.20 2.41
5836 6694 6.726490 AATTAGGCGTCTCTCCTATACAAA 57.274 37.500 0.00 0.00 36.20 2.83
5837 6695 6.919775 ATTAGGCGTCTCTCCTATACAAAT 57.080 37.500 0.00 0.00 36.20 2.32
5838 6696 8.418597 AATTAGGCGTCTCTCCTATACAAATA 57.581 34.615 0.00 0.00 36.20 1.40
5839 6697 5.968528 AGGCGTCTCTCCTATACAAATAG 57.031 43.478 0.00 0.00 35.73 1.73
5847 6705 3.764237 CCTATACAAATAGGCACCGGT 57.236 47.619 0.00 0.00 46.45 5.28
5848 6706 3.399330 CCTATACAAATAGGCACCGGTG 58.601 50.000 30.66 30.66 46.45 4.94
5858 6716 4.473643 CACCGGTGCTCCAGAAAA 57.526 55.556 24.02 0.00 0.00 2.29
5859 6717 2.714259 CACCGGTGCTCCAGAAAAA 58.286 52.632 24.02 0.00 0.00 1.94
5860 6718 0.310854 CACCGGTGCTCCAGAAAAAC 59.689 55.000 24.02 0.00 0.00 2.43
5861 6719 0.822121 ACCGGTGCTCCAGAAAAACC 60.822 55.000 6.12 0.00 0.00 3.27
5862 6720 1.524008 CCGGTGCTCCAGAAAAACCC 61.524 60.000 5.52 0.00 0.00 4.11
5863 6721 1.852067 CGGTGCTCCAGAAAAACCCG 61.852 60.000 5.52 0.00 0.00 5.28
5864 6722 1.524008 GGTGCTCCAGAAAAACCCGG 61.524 60.000 0.00 0.00 0.00 5.73
5865 6723 0.822121 GTGCTCCAGAAAAACCCGGT 60.822 55.000 0.00 0.00 0.00 5.28
5866 6724 0.106419 TGCTCCAGAAAAACCCGGTT 60.106 50.000 0.00 0.00 0.00 4.44
5867 6725 1.037493 GCTCCAGAAAAACCCGGTTT 58.963 50.000 9.92 9.92 37.34 3.27
5868 6726 2.232399 GCTCCAGAAAAACCCGGTTTA 58.768 47.619 16.03 0.00 34.43 2.01
5869 6727 2.823747 GCTCCAGAAAAACCCGGTTTAT 59.176 45.455 16.03 3.02 34.43 1.40
5870 6728 3.257375 GCTCCAGAAAAACCCGGTTTATT 59.743 43.478 16.03 11.90 34.43 1.40
5871 6729 4.262292 GCTCCAGAAAAACCCGGTTTATTT 60.262 41.667 16.03 7.76 34.43 1.40
5872 6730 5.740803 GCTCCAGAAAAACCCGGTTTATTTT 60.741 40.000 16.03 7.04 34.43 1.82
5873 6731 6.517027 GCTCCAGAAAAACCCGGTTTATTTTA 60.517 38.462 16.03 0.74 34.43 1.52
5874 6732 6.747125 TCCAGAAAAACCCGGTTTATTTTAC 58.253 36.000 16.03 4.88 34.43 2.01
5875 6733 6.550481 TCCAGAAAAACCCGGTTTATTTTACT 59.450 34.615 16.03 6.80 34.43 2.24
5876 6734 7.723172 TCCAGAAAAACCCGGTTTATTTTACTA 59.277 33.333 16.03 0.00 34.43 1.82
5877 6735 8.358895 CCAGAAAAACCCGGTTTATTTTACTAA 58.641 33.333 16.03 0.00 34.43 2.24
5878 6736 9.401873 CAGAAAAACCCGGTTTATTTTACTAAG 57.598 33.333 16.03 0.00 34.43 2.18
5879 6737 8.084073 AGAAAAACCCGGTTTATTTTACTAAGC 58.916 33.333 16.03 0.00 34.43 3.09
5880 6738 6.897706 AAACCCGGTTTATTTTACTAAGCA 57.102 33.333 14.16 0.00 33.70 3.91
5881 6739 5.885230 ACCCGGTTTATTTTACTAAGCAC 57.115 39.130 0.00 0.00 0.00 4.40
5882 6740 4.701651 ACCCGGTTTATTTTACTAAGCACC 59.298 41.667 0.00 0.00 0.00 5.01
5883 6741 4.945543 CCCGGTTTATTTTACTAAGCACCT 59.054 41.667 0.00 0.00 0.00 4.00
5884 6742 6.114767 CCCGGTTTATTTTACTAAGCACCTA 58.885 40.000 0.00 0.00 0.00 3.08
5885 6743 6.259387 CCCGGTTTATTTTACTAAGCACCTAG 59.741 42.308 0.00 0.00 0.00 3.02
5886 6744 6.238293 CCGGTTTATTTTACTAAGCACCTAGC 60.238 42.308 0.00 0.00 46.19 3.42
5898 6756 3.136808 GCACCTAGCATTGTACAAAGC 57.863 47.619 24.46 24.46 44.79 3.51
5899 6757 2.159379 GCACCTAGCATTGTACAAAGCC 60.159 50.000 27.17 12.97 44.79 4.35
5900 6758 3.347216 CACCTAGCATTGTACAAAGCCT 58.653 45.455 27.17 18.26 35.81 4.58
5901 6759 4.513442 CACCTAGCATTGTACAAAGCCTA 58.487 43.478 27.17 18.38 35.81 3.93
5902 6760 4.941263 CACCTAGCATTGTACAAAGCCTAA 59.059 41.667 27.17 14.98 35.81 2.69
5903 6761 5.065218 CACCTAGCATTGTACAAAGCCTAAG 59.935 44.000 27.17 21.46 35.81 2.18
5904 6762 4.576463 CCTAGCATTGTACAAAGCCTAAGG 59.424 45.833 27.17 25.10 35.81 2.69
5986 6844 6.995686 GGTACACACATGACAAATATATGGGA 59.004 38.462 0.00 0.00 0.00 4.37
6013 6871 9.732130 AATAGTCCAGAATTAATATCTTCCAGC 57.268 33.333 0.00 0.00 0.00 4.85
6027 6885 6.558488 ATCTTCCAGCAATCTAAAGAGACT 57.442 37.500 0.00 0.00 33.41 3.24
6054 6912 5.243507 TCAAGAAATTTCTACAATGGCTGCA 59.756 36.000 20.76 0.00 36.28 4.41
6056 6914 4.768968 AGAAATTTCTACAATGGCTGCACT 59.231 37.500 19.17 0.00 35.34 4.40
6137 6995 5.215160 GGTGTTGCTTCTGTTAATCTGTTG 58.785 41.667 0.00 0.00 0.00 3.33
6183 7041 1.003118 GTCAGGACTGTTGTATGCCCA 59.997 52.381 0.00 0.00 0.00 5.36
6185 7043 2.107378 TCAGGACTGTTGTATGCCCAAA 59.893 45.455 0.00 0.00 0.00 3.28
6200 7058 3.563808 TGCCCAAAAATAGCAGTATAGCG 59.436 43.478 0.00 0.00 40.15 4.26
6288 7902 5.102953 AGACTTGCATGTTAATAGAGCCA 57.897 39.130 6.70 0.00 0.00 4.75
6312 7938 5.473504 AGACAATGTCTTTTGTGGTACCATC 59.526 40.000 19.72 12.36 40.28 3.51
6317 7943 3.189287 GTCTTTTGTGGTACCATCAGCTG 59.811 47.826 19.72 7.63 0.00 4.24
6325 7951 4.339247 GTGGTACCATCAGCTGCATTTTAT 59.661 41.667 19.72 0.00 0.00 1.40
6328 7954 6.777091 TGGTACCATCAGCTGCATTTTATAAT 59.223 34.615 11.60 0.00 0.00 1.28
6330 7956 8.960591 GGTACCATCAGCTGCATTTTATAATAT 58.039 33.333 9.47 0.00 0.00 1.28
6558 8187 2.191400 TCTCCTTTCACTGCTGGCTAT 58.809 47.619 0.00 0.00 0.00 2.97
6593 8222 1.544246 GCTAAAAATTGGCCGGACAGT 59.456 47.619 11.51 3.97 0.00 3.55
6600 8229 1.420532 TTGGCCGGACAGTTAACCCT 61.421 55.000 11.51 0.00 0.00 4.34
6611 8240 4.980573 ACAGTTAACCCTTACATCAGCAA 58.019 39.130 0.88 0.00 0.00 3.91
6645 8274 2.167693 TCTTCATGACCCGATAAACGCT 59.832 45.455 0.00 0.00 41.07 5.07
6648 8277 0.539986 ATGACCCGATAAACGCTGGT 59.460 50.000 0.00 0.00 38.75 4.00
6670 8299 3.184382 TGAGATGGTGGTTCAGGTAGA 57.816 47.619 0.00 0.00 0.00 2.59
6671 8300 2.832129 TGAGATGGTGGTTCAGGTAGAC 59.168 50.000 0.00 0.00 0.00 2.59
6688 8317 0.532862 GACTGGATATGGTGCCGGTG 60.533 60.000 1.90 0.00 43.62 4.94
6701 8330 0.035820 GCCGGTGGTCATGTAAAGGA 60.036 55.000 1.90 0.00 0.00 3.36
6745 8375 5.238650 CGTTTCACAGTTAACCCAAGAGATT 59.761 40.000 0.88 0.00 0.00 2.40
6763 8393 9.956720 CAAGAGATTTCTTTTTCTTAGCAAAGA 57.043 29.630 0.00 3.34 41.71 2.52
6927 8559 2.612212 TGAAGTGAAAAGCGGAAGTGAC 59.388 45.455 0.00 0.00 0.00 3.67
6971 8603 7.103641 TCTCTTGTGGAACCAATAGTATTCAC 58.896 38.462 0.00 0.00 34.36 3.18
6982 8614 8.777578 ACCAATAGTATTCACCTACACTATGA 57.222 34.615 0.00 0.00 35.06 2.15
6983 8615 8.639761 ACCAATAGTATTCACCTACACTATGAC 58.360 37.037 0.00 0.00 35.06 3.06
6985 8617 8.638873 CAATAGTATTCACCTACACTATGACCA 58.361 37.037 0.00 0.00 35.06 4.02
6986 8618 8.777578 ATAGTATTCACCTACACTATGACCAA 57.222 34.615 0.00 0.00 33.91 3.67
6987 8619 7.676683 AGTATTCACCTACACTATGACCAAT 57.323 36.000 0.00 0.00 0.00 3.16
6988 8620 7.727181 AGTATTCACCTACACTATGACCAATC 58.273 38.462 0.00 0.00 0.00 2.67
6989 8621 6.814954 ATTCACCTACACTATGACCAATCT 57.185 37.500 0.00 0.00 0.00 2.40
6990 8622 5.598416 TCACCTACACTATGACCAATCTG 57.402 43.478 0.00 0.00 0.00 2.90
6991 8623 5.023452 TCACCTACACTATGACCAATCTGT 58.977 41.667 0.00 0.00 0.00 3.41
6992 8624 5.105351 TCACCTACACTATGACCAATCTGTG 60.105 44.000 0.00 0.00 0.00 3.66
6996 8628 7.344612 ACCTACACTATGACCAATCTGTGATTA 59.655 37.037 0.00 0.00 0.00 1.75
6997 8629 7.653713 CCTACACTATGACCAATCTGTGATTAC 59.346 40.741 0.00 0.00 0.00 1.89
7069 8744 3.890674 GGTCCTTCCGTGATGTGC 58.109 61.111 0.00 0.00 0.00 4.57
7090 8939 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
7109 8958 0.824109 CCTGTGGACTATGAAGGCGA 59.176 55.000 0.00 0.00 0.00 5.54
7115 8964 1.471676 GGACTATGAAGGCGACTGTGG 60.472 57.143 0.00 0.00 42.68 4.17
7126 8975 1.608283 GCGACTGTGGGAGCTTTTAGT 60.608 52.381 0.00 0.00 0.00 2.24
7131 8980 4.137543 ACTGTGGGAGCTTTTAGTCAAAG 58.862 43.478 0.00 0.00 44.44 2.77
7138 8987 5.390991 GGGAGCTTTTAGTCAAAGTCATTCG 60.391 44.000 0.00 0.00 43.62 3.34
7255 9109 3.118884 GCCCACTTCTGCAAATCATGATT 60.119 43.478 15.36 15.36 0.00 2.57
7326 9194 0.176449 CACTCCATCAGACGCATCCA 59.824 55.000 0.00 0.00 0.00 3.41
7330 9198 1.202568 TCCATCAGACGCATCCATCAC 60.203 52.381 0.00 0.00 0.00 3.06
7331 9199 1.473788 CCATCAGACGCATCCATCACA 60.474 52.381 0.00 0.00 0.00 3.58
7341 9209 4.050553 CGCATCCATCACACAAAAAGTTT 58.949 39.130 0.00 0.00 0.00 2.66
7356 9224 9.573133 CACAAAAAGTTTAGAGTGAAATGACTT 57.427 29.630 8.51 0.00 0.00 3.01
7357 9225 9.573133 ACAAAAAGTTTAGAGTGAAATGACTTG 57.427 29.630 0.00 0.00 0.00 3.16
7358 9226 9.023967 CAAAAAGTTTAGAGTGAAATGACTTGG 57.976 33.333 0.00 0.00 0.00 3.61
7359 9227 5.948992 AGTTTAGAGTGAAATGACTTGGC 57.051 39.130 0.00 0.00 0.00 4.52
7366 9238 0.449388 GAAATGACTTGGCCAGAGCG 59.551 55.000 5.11 0.00 41.24 5.03
7381 9253 4.321899 GCCAGAGCGATAAGAGAGATCAAT 60.322 45.833 0.00 0.00 0.00 2.57
7384 9256 6.145858 CCAGAGCGATAAGAGAGATCAATTTG 59.854 42.308 0.00 0.00 0.00 2.32
7406 9278 3.248043 CGAAGGAAGGTGGCAATCA 57.752 52.632 0.00 0.00 0.00 2.57
7413 9285 2.151202 GAAGGTGGCAATCAAGAACGA 58.849 47.619 0.00 0.00 0.00 3.85
7490 9365 7.834181 AGTTCCTAACCAACAGCATACATAAAT 59.166 33.333 0.00 0.00 0.00 1.40
7569 9449 5.417894 ACCAAATTTAGATCCCCGAGTTTTC 59.582 40.000 0.00 0.00 0.00 2.29
7603 9483 3.583966 TCCGTTATTCCTTACCAACACCT 59.416 43.478 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.116180 TCAAGTTCGTCAAGACAAGTTCAT 58.884 37.500 0.72 0.00 0.00 2.57
1 2 4.500127 TCAAGTTCGTCAAGACAAGTTCA 58.500 39.130 0.72 0.00 0.00 3.18
4 5 7.730364 ATTTATCAAGTTCGTCAAGACAAGT 57.270 32.000 0.72 0.00 0.00 3.16
5 6 9.694520 CATATTTATCAAGTTCGTCAAGACAAG 57.305 33.333 0.72 0.00 0.00 3.16
6 7 9.214957 ACATATTTATCAAGTTCGTCAAGACAA 57.785 29.630 0.72 0.00 0.00 3.18
7 8 8.655970 CACATATTTATCAAGTTCGTCAAGACA 58.344 33.333 0.72 0.00 0.00 3.41
8 9 7.636359 GCACATATTTATCAAGTTCGTCAAGAC 59.364 37.037 0.00 0.00 0.00 3.01
9 10 7.549134 AGCACATATTTATCAAGTTCGTCAAGA 59.451 33.333 0.00 0.00 0.00 3.02
10 11 7.688372 AGCACATATTTATCAAGTTCGTCAAG 58.312 34.615 0.00 0.00 0.00 3.02
11 12 7.609760 AGCACATATTTATCAAGTTCGTCAA 57.390 32.000 0.00 0.00 0.00 3.18
12 13 7.609760 AAGCACATATTTATCAAGTTCGTCA 57.390 32.000 0.00 0.00 0.00 4.35
28 29 9.267084 TCTCGCAAATACAATAATAAGCACATA 57.733 29.630 0.00 0.00 0.00 2.29
29 30 8.153479 TCTCGCAAATACAATAATAAGCACAT 57.847 30.769 0.00 0.00 0.00 3.21
30 31 7.546778 TCTCGCAAATACAATAATAAGCACA 57.453 32.000 0.00 0.00 0.00 4.57
31 32 8.835467 TTTCTCGCAAATACAATAATAAGCAC 57.165 30.769 0.00 0.00 0.00 4.40
32 33 7.643764 GCTTTCTCGCAAATACAATAATAAGCA 59.356 33.333 0.00 0.00 33.79 3.91
33 34 7.149288 CGCTTTCTCGCAAATACAATAATAAGC 60.149 37.037 0.00 0.00 0.00 3.09
34 35 8.061857 TCGCTTTCTCGCAAATACAATAATAAG 58.938 33.333 0.00 0.00 0.00 1.73
35 36 7.911343 TCGCTTTCTCGCAAATACAATAATAA 58.089 30.769 0.00 0.00 0.00 1.40
36 37 7.471657 TCGCTTTCTCGCAAATACAATAATA 57.528 32.000 0.00 0.00 0.00 0.98
37 38 6.358118 TCGCTTTCTCGCAAATACAATAAT 57.642 33.333 0.00 0.00 0.00 1.28
38 39 5.726688 GCTCGCTTTCTCGCAAATACAATAA 60.727 40.000 0.00 0.00 0.00 1.40
39 40 4.260212 GCTCGCTTTCTCGCAAATACAATA 60.260 41.667 0.00 0.00 0.00 1.90
40 41 3.485877 GCTCGCTTTCTCGCAAATACAAT 60.486 43.478 0.00 0.00 0.00 2.71
41 42 2.159707 GCTCGCTTTCTCGCAAATACAA 60.160 45.455 0.00 0.00 0.00 2.41
42 43 1.393539 GCTCGCTTTCTCGCAAATACA 59.606 47.619 0.00 0.00 0.00 2.29
43 44 1.267582 GGCTCGCTTTCTCGCAAATAC 60.268 52.381 0.00 0.00 0.00 1.89
44 45 1.006832 GGCTCGCTTTCTCGCAAATA 58.993 50.000 0.00 0.00 0.00 1.40
45 46 1.648467 GGGCTCGCTTTCTCGCAAAT 61.648 55.000 0.00 0.00 0.00 2.32
46 47 2.325082 GGGCTCGCTTTCTCGCAAA 61.325 57.895 0.00 0.00 0.00 3.68
47 48 2.742372 GGGCTCGCTTTCTCGCAA 60.742 61.111 0.00 0.00 0.00 4.85
48 49 3.649277 GAGGGCTCGCTTTCTCGCA 62.649 63.158 0.00 0.00 0.00 5.10
49 50 2.888051 GAGGGCTCGCTTTCTCGC 60.888 66.667 0.00 0.00 0.00 5.03
50 51 2.202810 GGAGGGCTCGCTTTCTCG 60.203 66.667 0.00 0.00 0.00 4.04
51 52 1.021920 GTTGGAGGGCTCGCTTTCTC 61.022 60.000 0.00 0.00 0.00 2.87
52 53 1.003233 GTTGGAGGGCTCGCTTTCT 60.003 57.895 0.00 0.00 0.00 2.52
53 54 1.302511 TGTTGGAGGGCTCGCTTTC 60.303 57.895 0.00 0.00 0.00 2.62
54 55 1.600916 GTGTTGGAGGGCTCGCTTT 60.601 57.895 0.00 0.00 0.00 3.51
55 56 2.032681 GTGTTGGAGGGCTCGCTT 59.967 61.111 0.00 0.00 0.00 4.68
56 57 4.379243 CGTGTTGGAGGGCTCGCT 62.379 66.667 0.00 0.00 0.00 4.93
57 58 3.876589 TTCGTGTTGGAGGGCTCGC 62.877 63.158 0.00 0.00 0.00 5.03
58 59 0.673644 ATTTCGTGTTGGAGGGCTCG 60.674 55.000 0.00 0.00 0.00 5.03
59 60 2.093658 TCTATTTCGTGTTGGAGGGCTC 60.094 50.000 0.00 0.00 0.00 4.70
60 61 1.906574 TCTATTTCGTGTTGGAGGGCT 59.093 47.619 0.00 0.00 0.00 5.19
61 62 2.396590 TCTATTTCGTGTTGGAGGGC 57.603 50.000 0.00 0.00 0.00 5.19
62 63 3.467803 GGATCTATTTCGTGTTGGAGGG 58.532 50.000 0.00 0.00 0.00 4.30
63 64 3.467803 GGGATCTATTTCGTGTTGGAGG 58.532 50.000 0.00 0.00 0.00 4.30
64 65 3.123804 CGGGATCTATTTCGTGTTGGAG 58.876 50.000 0.00 0.00 0.00 3.86
65 66 2.740580 GCGGGATCTATTTCGTGTTGGA 60.741 50.000 0.00 0.00 0.00 3.53
66 67 1.597663 GCGGGATCTATTTCGTGTTGG 59.402 52.381 0.00 0.00 0.00 3.77
67 68 2.276201 TGCGGGATCTATTTCGTGTTG 58.724 47.619 0.00 0.00 0.00 3.33
68 69 2.684001 TGCGGGATCTATTTCGTGTT 57.316 45.000 0.00 0.00 0.00 3.32
69 70 2.676342 GTTTGCGGGATCTATTTCGTGT 59.324 45.455 0.00 0.00 0.00 4.49
70 71 2.285602 CGTTTGCGGGATCTATTTCGTG 60.286 50.000 0.00 0.00 0.00 4.35
71 72 1.931172 CGTTTGCGGGATCTATTTCGT 59.069 47.619 0.00 0.00 0.00 3.85
72 73 1.332904 GCGTTTGCGGGATCTATTTCG 60.333 52.381 0.00 0.00 38.78 3.46
73 74 2.384899 GCGTTTGCGGGATCTATTTC 57.615 50.000 0.00 0.00 38.78 2.17
93 94 7.136289 TCTATTTACAAATGTTTCACGGGAC 57.864 36.000 0.00 0.00 0.00 4.46
94 95 7.201574 CGATCTATTTACAAATGTTTCACGGGA 60.202 37.037 0.00 0.00 0.00 5.14
95 96 6.905076 CGATCTATTTACAAATGTTTCACGGG 59.095 38.462 0.00 0.00 0.00 5.28
96 97 7.680982 TCGATCTATTTACAAATGTTTCACGG 58.319 34.615 0.00 0.00 0.00 4.94
97 98 9.536558 TTTCGATCTATTTACAAATGTTTCACG 57.463 29.630 0.00 0.00 0.00 4.35
111 112 9.462606 ACCCTCAATTAAACTTTCGATCTATTT 57.537 29.630 0.00 0.00 0.00 1.40
112 113 8.893727 CACCCTCAATTAAACTTTCGATCTATT 58.106 33.333 0.00 0.00 0.00 1.73
113 114 7.012421 GCACCCTCAATTAAACTTTCGATCTAT 59.988 37.037 0.00 0.00 0.00 1.98
114 115 6.315393 GCACCCTCAATTAAACTTTCGATCTA 59.685 38.462 0.00 0.00 0.00 1.98
115 116 5.123979 GCACCCTCAATTAAACTTTCGATCT 59.876 40.000 0.00 0.00 0.00 2.75
116 117 5.332707 GCACCCTCAATTAAACTTTCGATC 58.667 41.667 0.00 0.00 0.00 3.69
117 118 4.142687 CGCACCCTCAATTAAACTTTCGAT 60.143 41.667 0.00 0.00 0.00 3.59
118 119 3.187637 CGCACCCTCAATTAAACTTTCGA 59.812 43.478 0.00 0.00 0.00 3.71
119 120 3.488489 CGCACCCTCAATTAAACTTTCG 58.512 45.455 0.00 0.00 0.00 3.46
120 121 3.242518 GCGCACCCTCAATTAAACTTTC 58.757 45.455 0.30 0.00 0.00 2.62
121 122 2.625790 TGCGCACCCTCAATTAAACTTT 59.374 40.909 5.66 0.00 0.00 2.66
122 123 2.228822 CTGCGCACCCTCAATTAAACTT 59.771 45.455 5.66 0.00 0.00 2.66
123 124 1.812571 CTGCGCACCCTCAATTAAACT 59.187 47.619 5.66 0.00 0.00 2.66
124 125 1.810151 TCTGCGCACCCTCAATTAAAC 59.190 47.619 5.66 0.00 0.00 2.01
125 126 2.192664 TCTGCGCACCCTCAATTAAA 57.807 45.000 5.66 0.00 0.00 1.52
126 127 2.092968 AGATCTGCGCACCCTCAATTAA 60.093 45.455 5.66 0.00 0.00 1.40
127 128 1.486310 AGATCTGCGCACCCTCAATTA 59.514 47.619 5.66 0.00 0.00 1.40
131 132 2.580815 CAGATCTGCGCACCCTCA 59.419 61.111 5.66 0.00 0.00 3.86
161 162 1.066573 CAAACCGCACCAGATCTCTCT 60.067 52.381 0.00 0.00 0.00 3.10
162 163 1.363744 CAAACCGCACCAGATCTCTC 58.636 55.000 0.00 0.00 0.00 3.20
163 164 0.674895 GCAAACCGCACCAGATCTCT 60.675 55.000 0.00 0.00 41.79 3.10
164 165 0.674895 AGCAAACCGCACCAGATCTC 60.675 55.000 0.00 0.00 46.13 2.75
165 166 0.250901 AAGCAAACCGCACCAGATCT 60.251 50.000 0.00 0.00 46.13 2.75
166 167 0.598065 AAAGCAAACCGCACCAGATC 59.402 50.000 0.00 0.00 46.13 2.75
245 246 8.757164 TTCTTTTCTTTTCTTTTTCTGTGACC 57.243 30.769 0.00 0.00 0.00 4.02
268 269 3.324846 ACAAGATGCCCCTTTTTCCTTTC 59.675 43.478 0.00 0.00 0.00 2.62
269 270 3.317406 ACAAGATGCCCCTTTTTCCTTT 58.683 40.909 0.00 0.00 0.00 3.11
272 273 2.029020 GTGACAAGATGCCCCTTTTTCC 60.029 50.000 0.00 0.00 0.00 3.13
274 275 2.962859 AGTGACAAGATGCCCCTTTTT 58.037 42.857 0.00 0.00 0.00 1.94
290 291 1.525077 GTTCCGTGGTGCCAAGTGA 60.525 57.895 3.68 0.00 0.00 3.41
293 294 2.976494 AAGGGTTCCGTGGTGCCAAG 62.976 60.000 0.00 0.00 0.00 3.61
325 326 2.047179 GGACAGTTCAGGGGCGAC 60.047 66.667 0.00 0.00 0.00 5.19
391 392 1.017177 TTATGACGAACGCCCACTGC 61.017 55.000 0.00 0.00 0.00 4.40
392 393 0.719465 GTTATGACGAACGCCCACTG 59.281 55.000 0.00 0.00 0.00 3.66
506 512 0.906066 GGAAGAAGACTGACCCCCTC 59.094 60.000 0.00 0.00 0.00 4.30
529 535 2.746671 CAGCAGCAGCACAGGGAG 60.747 66.667 3.17 0.00 45.49 4.30
721 730 7.227116 GGAGATGAGTAGTACTAGTAACTGGTG 59.773 44.444 10.28 0.00 0.00 4.17
722 731 7.281841 GGAGATGAGTAGTACTAGTAACTGGT 58.718 42.308 10.28 1.40 0.00 4.00
724 733 7.511268 AGGGAGATGAGTAGTACTAGTAACTG 58.489 42.308 10.28 0.00 0.00 3.16
725 734 7.695074 AGGGAGATGAGTAGTACTAGTAACT 57.305 40.000 10.28 5.53 0.00 2.24
726 735 7.229106 CCAAGGGAGATGAGTAGTACTAGTAAC 59.771 44.444 10.28 0.06 0.00 2.50
727 736 7.092083 ACCAAGGGAGATGAGTAGTACTAGTAA 60.092 40.741 10.28 3.63 0.00 2.24
759 768 5.708948 CTCCACTACAGAACAGAAGAGAAG 58.291 45.833 0.00 0.00 0.00 2.85
997 1372 4.777463 ACCCTAACGAATTCCACCATAAG 58.223 43.478 0.00 0.00 0.00 1.73
1001 1376 2.235402 GAGACCCTAACGAATTCCACCA 59.765 50.000 0.00 0.00 0.00 4.17
1083 1458 2.351418 CGAATCTTGGCGACATTGCTTA 59.649 45.455 0.00 0.00 42.32 3.09
1093 1468 1.432270 GAAGGAGGCGAATCTTGGCG 61.432 60.000 0.00 0.00 36.92 5.69
1096 1471 0.464554 GGGGAAGGAGGCGAATCTTG 60.465 60.000 0.00 0.00 0.00 3.02
1107 1482 3.265995 GGTGAATTACTTGAGGGGAAGGA 59.734 47.826 0.00 0.00 0.00 3.36
1135 1513 1.004745 ACAAATCACCGAGGAGGCAAT 59.995 47.619 0.00 0.00 46.52 3.56
1277 1662 2.362736 ACTACGCGGACTGATTACTGA 58.637 47.619 12.47 0.00 0.00 3.41
1280 1665 2.190981 CCAACTACGCGGACTGATTAC 58.809 52.381 12.47 0.00 0.00 1.89
1289 1674 0.525668 CAGCTAGACCAACTACGCGG 60.526 60.000 12.47 0.00 33.65 6.46
1292 1677 3.428870 CACAAACAGCTAGACCAACTACG 59.571 47.826 0.00 0.00 0.00 3.51
1320 1705 5.048083 TCGCTCAAATAGGCAGAAACAAATT 60.048 36.000 0.00 0.00 0.00 1.82
1321 1706 4.458989 TCGCTCAAATAGGCAGAAACAAAT 59.541 37.500 0.00 0.00 0.00 2.32
1342 1727 0.755079 TTGGGCAGAGATCAGGATCG 59.245 55.000 3.77 0.00 42.48 3.69
1348 1733 3.265221 AGAGTCAAATTGGGCAGAGATCA 59.735 43.478 0.00 0.00 0.00 2.92
1417 1821 6.705381 TCAATTCCTTGCCATTTACAACTTTG 59.295 34.615 0.00 0.00 32.11 2.77
1516 1920 9.942850 CCCCAATGTAGAACTTCAAATTTTATT 57.057 29.630 0.00 0.00 0.00 1.40
1517 1921 8.040727 GCCCCAATGTAGAACTTCAAATTTTAT 58.959 33.333 0.00 0.00 0.00 1.40
1518 1922 7.234577 AGCCCCAATGTAGAACTTCAAATTTTA 59.765 33.333 0.00 0.00 0.00 1.52
1519 1923 6.043127 AGCCCCAATGTAGAACTTCAAATTTT 59.957 34.615 0.00 0.00 0.00 1.82
1520 1924 5.543790 AGCCCCAATGTAGAACTTCAAATTT 59.456 36.000 0.00 0.00 0.00 1.82
1521 1925 5.086621 AGCCCCAATGTAGAACTTCAAATT 58.913 37.500 0.00 0.00 0.00 1.82
1522 1926 4.677182 AGCCCCAATGTAGAACTTCAAAT 58.323 39.130 0.00 0.00 0.00 2.32
1523 1927 4.112634 AGCCCCAATGTAGAACTTCAAA 57.887 40.909 0.00 0.00 0.00 2.69
1524 1928 3.806949 AGCCCCAATGTAGAACTTCAA 57.193 42.857 0.00 0.00 0.00 2.69
1525 1929 3.806949 AAGCCCCAATGTAGAACTTCA 57.193 42.857 0.00 0.00 0.00 3.02
1526 1930 6.775594 AATAAAGCCCCAATGTAGAACTTC 57.224 37.500 0.00 0.00 0.00 3.01
1527 1931 6.496911 ACAAATAAAGCCCCAATGTAGAACTT 59.503 34.615 0.00 0.00 0.00 2.66
1528 1932 6.016555 ACAAATAAAGCCCCAATGTAGAACT 58.983 36.000 0.00 0.00 0.00 3.01
1529 1933 6.280855 ACAAATAAAGCCCCAATGTAGAAC 57.719 37.500 0.00 0.00 0.00 3.01
1530 1934 6.926630 AACAAATAAAGCCCCAATGTAGAA 57.073 33.333 0.00 0.00 0.00 2.10
1531 1935 6.926630 AAACAAATAAAGCCCCAATGTAGA 57.073 33.333 0.00 0.00 0.00 2.59
1532 1936 7.763985 CCTAAAACAAATAAAGCCCCAATGTAG 59.236 37.037 0.00 0.00 0.00 2.74
1533 1937 7.455008 TCCTAAAACAAATAAAGCCCCAATGTA 59.545 33.333 0.00 0.00 0.00 2.29
1534 1938 6.271159 TCCTAAAACAAATAAAGCCCCAATGT 59.729 34.615 0.00 0.00 0.00 2.71
1535 1939 6.593770 GTCCTAAAACAAATAAAGCCCCAATG 59.406 38.462 0.00 0.00 0.00 2.82
1536 1940 6.500400 AGTCCTAAAACAAATAAAGCCCCAAT 59.500 34.615 0.00 0.00 0.00 3.16
1537 1941 5.841783 AGTCCTAAAACAAATAAAGCCCCAA 59.158 36.000 0.00 0.00 0.00 4.12
1538 1942 5.399113 AGTCCTAAAACAAATAAAGCCCCA 58.601 37.500 0.00 0.00 0.00 4.96
1539 1943 5.995565 AGTCCTAAAACAAATAAAGCCCC 57.004 39.130 0.00 0.00 0.00 5.80
1540 1944 6.662234 AGGTAGTCCTAAAACAAATAAAGCCC 59.338 38.462 0.00 0.00 43.12 5.19
1541 1945 7.698506 AGGTAGTCCTAAAACAAATAAAGCC 57.301 36.000 0.00 0.00 43.12 4.35
1664 2069 5.548181 ACAGCAGATATCAGTGACATGAT 57.452 39.130 5.32 3.70 42.52 2.45
1668 2073 7.278646 GTGAAATTACAGCAGATATCAGTGACA 59.721 37.037 5.32 0.00 0.00 3.58
1906 2311 0.108472 CTCGCTCTGTTGATGCTGGA 60.108 55.000 0.00 0.00 0.00 3.86
1934 2339 6.149973 TGAGGTATTGCATTATCATTAGCAGC 59.850 38.462 1.97 0.00 38.35 5.25
1987 2392 6.586844 TCAGTGTAGAGAGATGATACGATACG 59.413 42.308 0.00 0.00 0.00 3.06
2035 2440 4.565962 CGAAGATCAGATTGACAGGTGAAG 59.434 45.833 0.00 0.00 0.00 3.02
2040 2445 3.118992 TCCACGAAGATCAGATTGACAGG 60.119 47.826 0.00 0.00 0.00 4.00
2337 2742 5.687285 GCTGTTGTTTTACACTCCATTCAAG 59.313 40.000 0.00 0.00 0.00 3.02
2432 2920 4.922206 AGGTATTTTCATGAAGACCAGCA 58.078 39.130 25.90 4.76 0.00 4.41
2439 2927 8.186821 GGTCAAGATGAAGGTATTTTCATGAAG 58.813 37.037 8.41 0.00 45.30 3.02
2498 2987 5.835257 ACCATCCATTCGCTTATGATTTTG 58.165 37.500 0.00 0.00 0.00 2.44
2550 3039 5.931441 AAACACTGTGTTAATCTGCTCTC 57.069 39.130 24.93 0.00 40.14 3.20
2610 3099 5.523438 TGTACAAAAACCAAGGACCAATC 57.477 39.130 0.00 0.00 0.00 2.67
2632 3121 3.308473 GGGAGGGCACTAAGATCTTGTTT 60.308 47.826 18.47 0.00 0.00 2.83
2742 3403 9.231297 AGCTAAAAGAAAGCATACAAGATTACA 57.769 29.630 0.00 0.00 42.62 2.41
2775 3436 3.732212 TCTCCCGTTGCTCATCATAATG 58.268 45.455 0.00 0.00 0.00 1.90
3016 3690 6.448369 TCTGAAGTGGGAGGAAGAATAAAA 57.552 37.500 0.00 0.00 0.00 1.52
3044 3721 7.040686 AGGGTAAATGTTAGTTAAGTTGTGCAG 60.041 37.037 0.00 0.00 0.00 4.41
3451 4128 2.396160 GCGCAAAGCTGGAATGATAG 57.604 50.000 0.30 0.00 44.04 2.08
3626 4303 3.389656 TGTGTTTGACTACTGATGGACCA 59.610 43.478 0.00 0.00 0.00 4.02
3666 4343 8.930760 GCTTGTTACCATGCAATTTTAATACAA 58.069 29.630 0.00 0.00 40.48 2.41
3709 4386 7.533426 AGCAGATTCAGTTCATACAAAATGAC 58.467 34.615 0.00 0.00 33.41 3.06
3838 4515 0.031178 CTGCAGTTGTGTTTGCCTCC 59.969 55.000 5.25 0.00 39.54 4.30
3948 4626 2.369394 GCCACTGGAAGGGAGTTAATG 58.631 52.381 0.00 0.00 43.23 1.90
3955 4633 0.474854 TAAGTGGCCACTGGAAGGGA 60.475 55.000 38.35 14.91 43.23 4.20
4155 4838 6.493115 TGATTGGACAATTTTAGTGTGATGGT 59.507 34.615 0.00 0.00 0.00 3.55
4200 4883 5.791336 ATGTGTTGTAGAACTCAGTGAGA 57.209 39.130 26.86 0.64 38.58 3.27
4295 4978 1.413227 GGTCCAGGCCAGTATCCTACT 60.413 57.143 5.01 0.00 40.28 2.57
4376 5059 5.066913 ACCAATCTAATCCCAATTCTCCC 57.933 43.478 0.00 0.00 0.00 4.30
4405 5088 3.431486 GCCATGAGGAACAACCAAACAAA 60.431 43.478 0.00 0.00 42.04 2.83
4471 5154 1.931007 GCAATCAGCTTCCCCTCCCT 61.931 60.000 0.00 0.00 41.15 4.20
4481 5164 0.254178 AGGATTCCGTGCAATCAGCT 59.746 50.000 0.00 0.00 45.94 4.24
4491 5174 3.571590 AGAGATGCTCTTAGGATTCCGT 58.428 45.455 0.00 0.00 37.60 4.69
4493 5176 4.526262 TGCTAGAGATGCTCTTAGGATTCC 59.474 45.833 1.88 0.00 41.50 3.01
4501 5184 2.899256 GGGATCTGCTAGAGATGCTCTT 59.101 50.000 16.99 0.00 46.30 2.85
4560 5246 5.799936 CGAGGTACCGTAAATTCGTTTTAGA 59.200 40.000 6.18 0.00 30.46 2.10
4582 5268 1.377202 GTTCTGCCCAATGCCTCGA 60.377 57.895 0.00 0.00 40.16 4.04
4634 5322 2.464157 AGCGTGAGGAGAAAAGGAAG 57.536 50.000 0.00 0.00 0.00 3.46
4637 5325 2.464157 AGAAGCGTGAGGAGAAAAGG 57.536 50.000 0.00 0.00 0.00 3.11
4638 5326 3.658709 AGAAGAAGCGTGAGGAGAAAAG 58.341 45.455 0.00 0.00 0.00 2.27
4661 5349 2.488355 CATACGTGCGTCTCGGGT 59.512 61.111 0.00 0.00 0.00 5.28
4675 5363 1.134367 CAGAGTTCGAGTTCGCCCATA 59.866 52.381 0.00 0.00 39.60 2.74
4725 5447 2.283604 TGTCACCGGAGCAGGCTA 60.284 61.111 9.46 0.00 33.69 3.93
4726 5448 4.008933 GTGTCACCGGAGCAGGCT 62.009 66.667 9.46 0.00 33.69 4.58
4729 5451 2.262915 GGAGTGTCACCGGAGCAG 59.737 66.667 9.46 0.00 0.00 4.24
4817 5540 2.553685 GGGTCCTGTAAAACCGGTCAAT 60.554 50.000 8.04 0.00 36.35 2.57
4860 5583 8.613922 TTAGAGCTTCCATCCATCATATATGA 57.386 34.615 17.56 17.56 41.70 2.15
4877 5600 5.303589 TGCAGGTTACCGTATATTAGAGCTT 59.696 40.000 0.00 0.00 0.00 3.74
4911 5636 7.574021 AGATCCTGTAAAATAGCATATCCCA 57.426 36.000 0.00 0.00 0.00 4.37
4984 5711 5.416271 TCTCTAGCAAATCCCGTAAAAGT 57.584 39.130 0.00 0.00 0.00 2.66
5009 5736 1.808133 CGGTTGGAGATGCTCTTAGGC 60.808 57.143 0.00 0.00 0.00 3.93
5035 5762 4.202419 CCGGACATATAGGGACAAAATGGA 60.202 45.833 0.00 0.00 0.00 3.41
5058 5785 2.262915 CTGTCTGGGCTGTCCGAC 59.737 66.667 13.75 13.75 38.57 4.79
5105 5832 1.452108 GAGGGCGATTTGAGGGGTG 60.452 63.158 0.00 0.00 0.00 4.61
5119 5846 1.372683 CAGCCCGGACATATGAGGG 59.627 63.158 22.48 22.48 46.44 4.30
5170 5920 1.267574 ATGGTGGACAGCTCGGACAT 61.268 55.000 3.02 0.00 0.00 3.06
5185 5935 2.248374 ATCCAGGTTGGGCCATGGT 61.248 57.895 21.12 8.69 38.32 3.55
5189 5948 0.039035 GTTACATCCAGGTTGGGCCA 59.961 55.000 0.00 0.00 38.32 5.36
5196 5955 2.995547 GGGGCGTTACATCCAGGT 59.004 61.111 0.00 0.00 0.00 4.00
5228 5987 1.227853 AGGCACAACGGACAGGAAC 60.228 57.895 0.00 0.00 0.00 3.62
5268 6027 1.064758 AGTGTTGGTCTGTGAAGCCAA 60.065 47.619 0.00 0.00 39.66 4.52
5273 6032 5.353394 AAAGACTAGTGTTGGTCTGTGAA 57.647 39.130 5.96 0.00 43.50 3.18
5305 6064 3.545124 ATCCCTGGTGCGCGACAAA 62.545 57.895 12.10 0.00 0.00 2.83
5375 6143 1.821136 GGGAGCCCATTCTCAAAGTTG 59.179 52.381 0.00 0.00 34.84 3.16
5385 6153 0.631212 ATCTTTTCCGGGAGCCCATT 59.369 50.000 0.00 0.00 35.37 3.16
5404 6182 2.682155 TACATCAACATGGTGCGCTA 57.318 45.000 9.73 0.00 29.79 4.26
5405 6183 1.739466 CTTACATCAACATGGTGCGCT 59.261 47.619 9.73 0.00 29.79 5.92
5407 6185 3.932710 ACTACTTACATCAACATGGTGCG 59.067 43.478 5.66 1.79 29.79 5.34
5484 6264 7.713073 TGGAGAGAGAAAGAGAAAAGAAAGAAC 59.287 37.037 0.00 0.00 0.00 3.01
5556 6336 1.378514 AATTGTCCGCCCGAGCAAT 60.379 52.632 0.00 0.00 39.83 3.56
5557 6337 2.033448 AATTGTCCGCCCGAGCAA 59.967 55.556 0.00 0.00 39.83 3.91
5561 6341 2.267642 CCTCAATTGTCCGCCCGA 59.732 61.111 5.13 0.00 0.00 5.14
5714 6572 1.895131 CTTGCATTGTACAGGGCCTTT 59.105 47.619 1.32 0.00 0.00 3.11
5720 6578 3.975992 GCGTCTTGCATTGTACAGG 57.024 52.632 0.00 0.00 45.45 4.00
5730 6588 0.036294 ACTTCCCCTAAGCGTCTTGC 60.036 55.000 2.86 0.00 46.98 4.01
5731 6589 1.726853 CACTTCCCCTAAGCGTCTTG 58.273 55.000 2.86 0.00 38.93 3.02
5732 6590 0.036294 GCACTTCCCCTAAGCGTCTT 60.036 55.000 0.00 0.00 38.93 3.01
5733 6591 0.905337 AGCACTTCCCCTAAGCGTCT 60.905 55.000 0.00 0.00 38.93 4.18
5734 6592 0.036294 AAGCACTTCCCCTAAGCGTC 60.036 55.000 0.00 0.00 38.93 5.19
5735 6593 1.207329 CTAAGCACTTCCCCTAAGCGT 59.793 52.381 0.00 0.00 38.93 5.07
5736 6594 1.480954 TCTAAGCACTTCCCCTAAGCG 59.519 52.381 0.00 0.00 38.93 4.68
5737 6595 3.847671 ATCTAAGCACTTCCCCTAAGC 57.152 47.619 0.00 0.00 38.93 3.09
5738 6596 9.847224 TTTATTTATCTAAGCACTTCCCCTAAG 57.153 33.333 0.00 0.00 41.33 2.18
5739 6597 9.623000 GTTTATTTATCTAAGCACTTCCCCTAA 57.377 33.333 0.00 0.00 0.00 2.69
5740 6598 8.215736 GGTTTATTTATCTAAGCACTTCCCCTA 58.784 37.037 0.00 0.00 0.00 3.53
5741 6599 7.061054 GGTTTATTTATCTAAGCACTTCCCCT 58.939 38.462 0.00 0.00 0.00 4.79
5742 6600 6.831868 TGGTTTATTTATCTAAGCACTTCCCC 59.168 38.462 0.00 0.00 0.00 4.81
5743 6601 7.556635 ACTGGTTTATTTATCTAAGCACTTCCC 59.443 37.037 0.00 0.00 0.00 3.97
5744 6602 8.398665 CACTGGTTTATTTATCTAAGCACTTCC 58.601 37.037 0.00 0.00 0.00 3.46
5745 6603 8.947115 ACACTGGTTTATTTATCTAAGCACTTC 58.053 33.333 0.00 0.00 0.00 3.01
5746 6604 8.863872 ACACTGGTTTATTTATCTAAGCACTT 57.136 30.769 0.00 0.00 0.00 3.16
5747 6605 8.863872 AACACTGGTTTATTTATCTAAGCACT 57.136 30.769 0.00 0.00 31.83 4.40
5748 6606 9.556030 GAAACACTGGTTTATTTATCTAAGCAC 57.444 33.333 0.00 0.00 46.84 4.40
5749 6607 9.515226 AGAAACACTGGTTTATTTATCTAAGCA 57.485 29.630 0.00 0.00 46.84 3.91
5750 6608 9.989869 GAGAAACACTGGTTTATTTATCTAAGC 57.010 33.333 0.00 0.00 46.84 3.09
5755 6613 9.989869 GCTTAGAGAAACACTGGTTTATTTATC 57.010 33.333 0.00 0.00 46.84 1.75
5756 6614 9.515226 TGCTTAGAGAAACACTGGTTTATTTAT 57.485 29.630 0.00 0.00 46.84 1.40
5757 6615 8.780249 GTGCTTAGAGAAACACTGGTTTATTTA 58.220 33.333 0.00 0.00 46.84 1.40
5758 6616 7.255486 GGTGCTTAGAGAAACACTGGTTTATTT 60.255 37.037 0.00 0.00 46.84 1.40
5759 6617 6.206829 GGTGCTTAGAGAAACACTGGTTTATT 59.793 38.462 0.00 0.00 46.84 1.40
5760 6618 5.705905 GGTGCTTAGAGAAACACTGGTTTAT 59.294 40.000 0.00 0.00 46.84 1.40
5761 6619 5.061179 GGTGCTTAGAGAAACACTGGTTTA 58.939 41.667 0.00 0.00 46.84 2.01
5763 6621 3.477530 GGTGCTTAGAGAAACACTGGTT 58.522 45.455 0.00 0.00 39.43 3.67
5764 6622 2.548067 CGGTGCTTAGAGAAACACTGGT 60.548 50.000 0.00 0.00 36.08 4.00
5765 6623 2.069273 CGGTGCTTAGAGAAACACTGG 58.931 52.381 0.00 0.00 36.08 4.00
5766 6624 2.069273 CCGGTGCTTAGAGAAACACTG 58.931 52.381 0.00 0.00 38.79 3.66
5767 6625 1.692519 ACCGGTGCTTAGAGAAACACT 59.307 47.619 6.12 0.00 33.53 3.55
5768 6626 1.798813 CACCGGTGCTTAGAGAAACAC 59.201 52.381 24.02 0.00 0.00 3.32
5769 6627 2.163818 CACCGGTGCTTAGAGAAACA 57.836 50.000 24.02 0.00 0.00 2.83
5781 6639 2.418628 CCTGTACAAATAAGCACCGGTG 59.581 50.000 30.66 30.66 0.00 4.94
5782 6640 2.617021 CCCTGTACAAATAAGCACCGGT 60.617 50.000 0.00 0.00 0.00 5.28
5783 6641 2.014128 CCCTGTACAAATAAGCACCGG 58.986 52.381 0.00 0.00 0.00 5.28
5784 6642 2.706890 ACCCTGTACAAATAAGCACCG 58.293 47.619 0.00 0.00 0.00 4.94
5785 6643 4.874396 GTCTACCCTGTACAAATAAGCACC 59.126 45.833 0.00 0.00 0.00 5.01
5786 6644 4.565564 CGTCTACCCTGTACAAATAAGCAC 59.434 45.833 0.00 0.00 0.00 4.40
5787 6645 4.751060 CGTCTACCCTGTACAAATAAGCA 58.249 43.478 0.00 0.00 0.00 3.91
5788 6646 3.554731 GCGTCTACCCTGTACAAATAAGC 59.445 47.826 0.00 0.00 0.00 3.09
5789 6647 5.007385 AGCGTCTACCCTGTACAAATAAG 57.993 43.478 0.00 0.00 0.00 1.73
5790 6648 5.410355 AAGCGTCTACCCTGTACAAATAA 57.590 39.130 0.00 0.00 0.00 1.40
5791 6649 6.528537 TTAAGCGTCTACCCTGTACAAATA 57.471 37.500 0.00 0.00 0.00 1.40
5792 6650 3.975168 AAGCGTCTACCCTGTACAAAT 57.025 42.857 0.00 0.00 0.00 2.32
5793 6651 4.870123 TTAAGCGTCTACCCTGTACAAA 57.130 40.909 0.00 0.00 0.00 2.83
5794 6652 5.410355 AATTAAGCGTCTACCCTGTACAA 57.590 39.130 0.00 0.00 0.00 2.41
5795 6653 5.068198 CCTAATTAAGCGTCTACCCTGTACA 59.932 44.000 0.00 0.00 0.00 2.90
5796 6654 5.527033 CCTAATTAAGCGTCTACCCTGTAC 58.473 45.833 0.00 0.00 0.00 2.90
5797 6655 4.038402 GCCTAATTAAGCGTCTACCCTGTA 59.962 45.833 0.00 0.00 0.00 2.74
5798 6656 3.181468 GCCTAATTAAGCGTCTACCCTGT 60.181 47.826 0.00 0.00 0.00 4.00
5799 6657 3.391049 GCCTAATTAAGCGTCTACCCTG 58.609 50.000 0.00 0.00 0.00 4.45
5800 6658 3.747854 GCCTAATTAAGCGTCTACCCT 57.252 47.619 0.00 0.00 0.00 4.34
5809 6667 3.737032 AGGAGAGACGCCTAATTAAGC 57.263 47.619 0.00 0.00 30.33 3.09
5810 6668 7.450124 TGTATAGGAGAGACGCCTAATTAAG 57.550 40.000 5.48 0.00 39.20 1.85
5811 6669 7.828508 TTGTATAGGAGAGACGCCTAATTAA 57.171 36.000 5.48 0.06 39.20 1.40
5812 6670 7.828508 TTTGTATAGGAGAGACGCCTAATTA 57.171 36.000 5.48 0.00 39.20 1.40
5813 6671 6.726490 TTTGTATAGGAGAGACGCCTAATT 57.274 37.500 5.48 0.00 39.20 1.40
5814 6672 6.919775 ATTTGTATAGGAGAGACGCCTAAT 57.080 37.500 5.48 0.00 39.20 1.73
5815 6673 7.450124 CTATTTGTATAGGAGAGACGCCTAA 57.550 40.000 5.48 0.00 39.20 2.69
5817 6675 5.968528 CTATTTGTATAGGAGAGACGCCT 57.031 43.478 0.00 0.00 37.45 5.52
5841 6699 0.310854 GTTTTTCTGGAGCACCGGTG 59.689 55.000 30.66 30.66 42.77 4.94
5842 6700 0.822121 GGTTTTTCTGGAGCACCGGT 60.822 55.000 0.00 0.00 42.77 5.28
5843 6701 1.524008 GGGTTTTTCTGGAGCACCGG 61.524 60.000 0.00 0.00 43.52 5.28
5844 6702 1.852067 CGGGTTTTTCTGGAGCACCG 61.852 60.000 0.00 0.00 39.42 4.94
5845 6703 1.524008 CCGGGTTTTTCTGGAGCACC 61.524 60.000 0.00 0.00 35.18 5.01
5846 6704 0.822121 ACCGGGTTTTTCTGGAGCAC 60.822 55.000 6.32 0.00 36.97 4.40
5847 6705 0.106419 AACCGGGTTTTTCTGGAGCA 60.106 50.000 6.59 0.00 36.97 4.26
5848 6706 1.037493 AAACCGGGTTTTTCTGGAGC 58.963 50.000 19.22 0.00 36.97 4.70
5849 6707 5.462530 AAATAAACCGGGTTTTTCTGGAG 57.537 39.130 28.50 0.00 37.01 3.86
5850 6708 5.873146 AAAATAAACCGGGTTTTTCTGGA 57.127 34.783 28.50 11.38 37.01 3.86
5851 6709 6.751157 AGTAAAATAAACCGGGTTTTTCTGG 58.249 36.000 28.50 0.00 37.01 3.86
5852 6710 9.401873 CTTAGTAAAATAAACCGGGTTTTTCTG 57.598 33.333 28.50 6.57 37.01 3.02
5853 6711 8.084073 GCTTAGTAAAATAAACCGGGTTTTTCT 58.916 33.333 28.50 16.02 37.01 2.52
5854 6712 7.866898 TGCTTAGTAAAATAAACCGGGTTTTTC 59.133 33.333 28.50 10.00 37.01 2.29
5855 6713 7.652909 GTGCTTAGTAAAATAAACCGGGTTTTT 59.347 33.333 28.50 18.85 37.01 1.94
5856 6714 7.147312 GTGCTTAGTAAAATAAACCGGGTTTT 58.853 34.615 28.50 14.21 37.01 2.43
5857 6715 6.294675 GGTGCTTAGTAAAATAAACCGGGTTT 60.295 38.462 26.79 26.79 39.24 3.27
5858 6716 5.183713 GGTGCTTAGTAAAATAAACCGGGTT 59.816 40.000 10.96 10.96 0.00 4.11
5859 6717 4.701651 GGTGCTTAGTAAAATAAACCGGGT 59.298 41.667 6.32 0.00 0.00 5.28
5860 6718 4.945543 AGGTGCTTAGTAAAATAAACCGGG 59.054 41.667 6.32 0.00 0.00 5.73
5861 6719 6.238293 GCTAGGTGCTTAGTAAAATAAACCGG 60.238 42.308 0.00 0.00 38.95 5.28
5862 6720 6.314400 TGCTAGGTGCTTAGTAAAATAAACCG 59.686 38.462 0.00 0.00 43.37 4.44
5863 6721 7.619964 TGCTAGGTGCTTAGTAAAATAAACC 57.380 36.000 0.00 0.00 43.37 3.27
5864 6722 9.503427 CAATGCTAGGTGCTTAGTAAAATAAAC 57.497 33.333 0.00 0.00 43.37 2.01
5865 6723 9.238368 ACAATGCTAGGTGCTTAGTAAAATAAA 57.762 29.630 0.00 0.00 43.37 1.40
5866 6724 8.801882 ACAATGCTAGGTGCTTAGTAAAATAA 57.198 30.769 0.00 0.00 43.37 1.40
5867 6725 9.321562 GTACAATGCTAGGTGCTTAGTAAAATA 57.678 33.333 0.00 0.00 43.37 1.40
5868 6726 7.827236 TGTACAATGCTAGGTGCTTAGTAAAAT 59.173 33.333 0.00 0.00 43.37 1.82
5869 6727 7.162761 TGTACAATGCTAGGTGCTTAGTAAAA 58.837 34.615 0.00 0.00 43.37 1.52
5870 6728 6.703319 TGTACAATGCTAGGTGCTTAGTAAA 58.297 36.000 0.00 0.00 43.37 2.01
5871 6729 6.288941 TGTACAATGCTAGGTGCTTAGTAA 57.711 37.500 0.00 0.00 43.37 2.24
5872 6730 5.925506 TGTACAATGCTAGGTGCTTAGTA 57.074 39.130 0.00 0.00 43.37 1.82
5873 6731 4.819105 TGTACAATGCTAGGTGCTTAGT 57.181 40.909 0.00 0.00 43.37 2.24
5874 6732 5.447818 GCTTTGTACAATGCTAGGTGCTTAG 60.448 44.000 29.44 13.04 43.37 2.18
5875 6733 4.394920 GCTTTGTACAATGCTAGGTGCTTA 59.605 41.667 29.44 3.89 43.37 3.09
5876 6734 3.191371 GCTTTGTACAATGCTAGGTGCTT 59.809 43.478 29.44 0.00 43.37 3.91
5877 6735 2.749621 GCTTTGTACAATGCTAGGTGCT 59.250 45.455 29.44 0.00 43.37 4.40
5878 6736 2.159379 GGCTTTGTACAATGCTAGGTGC 60.159 50.000 32.80 18.79 40.18 5.01
5879 6737 3.347216 AGGCTTTGTACAATGCTAGGTG 58.653 45.455 32.80 10.49 40.18 4.00
5880 6738 3.721087 AGGCTTTGTACAATGCTAGGT 57.279 42.857 32.80 19.14 40.18 3.08
5881 6739 4.576463 CCTTAGGCTTTGTACAATGCTAGG 59.424 45.833 32.80 29.72 40.18 3.02
5882 6740 4.035675 GCCTTAGGCTTTGTACAATGCTAG 59.964 45.833 32.80 26.81 46.69 3.42
5883 6741 3.945285 GCCTTAGGCTTTGTACAATGCTA 59.055 43.478 32.80 23.50 46.69 3.49
5884 6742 2.755103 GCCTTAGGCTTTGTACAATGCT 59.245 45.455 32.80 24.24 46.69 3.79
5885 6743 3.150848 GCCTTAGGCTTTGTACAATGC 57.849 47.619 29.08 29.08 46.69 3.56
5904 6762 2.899339 GGGCGGCAAGAGAGATGC 60.899 66.667 12.47 0.00 43.08 3.91
5905 6763 0.883814 GATGGGCGGCAAGAGAGATG 60.884 60.000 12.47 0.00 0.00 2.90
6027 6885 7.362056 GCAGCCATTGTAGAAATTTCTTGACTA 60.362 37.037 25.02 15.13 38.70 2.59
6054 6912 4.699925 TTAGTCAAGTTGGTGGCTTAGT 57.300 40.909 2.34 0.00 34.59 2.24
6056 6914 4.577283 GTGTTTAGTCAAGTTGGTGGCTTA 59.423 41.667 2.34 0.00 34.59 3.09
6183 7041 5.751990 AGTTACGCGCTATACTGCTATTTTT 59.248 36.000 5.73 0.00 0.00 1.94
6185 7043 4.680110 CAGTTACGCGCTATACTGCTATTT 59.320 41.667 5.73 0.00 32.53 1.40
6200 7058 3.249080 TCACTAACCAAAAGCAGTTACGC 59.751 43.478 0.00 0.00 0.00 4.42
6288 7902 4.787551 TGGTACCACAAAAGACATTGTCT 58.212 39.130 11.60 13.61 45.64 3.41
6343 7969 9.256228 TGGGCTAAGTAGATGAATACTAATAGG 57.744 37.037 0.00 0.00 34.90 2.57
6398 8026 7.343833 AGGTGAAATATCATGCAAATTCCTCTT 59.656 33.333 0.00 0.00 38.01 2.85
6399 8027 6.837568 AGGTGAAATATCATGCAAATTCCTCT 59.162 34.615 0.00 0.00 38.01 3.69
6558 8187 5.420725 TTTTTAGCCAGATAGCTCTGTGA 57.579 39.130 0.00 0.00 46.33 3.58
6579 8208 1.541379 GGTTAACTGTCCGGCCAATT 58.459 50.000 2.24 0.00 0.00 2.32
6593 8222 6.376018 GGTGTAATTGCTGATGTAAGGGTTAA 59.624 38.462 0.00 0.00 0.00 2.01
6600 8229 4.584638 AGGGGTGTAATTGCTGATGTAA 57.415 40.909 0.00 0.00 0.00 2.41
6611 8240 5.016831 GGTCATGAAGAAAAGGGGTGTAAT 58.983 41.667 0.00 0.00 0.00 1.89
6645 8274 2.505407 CCTGAACCACCATCTCATACCA 59.495 50.000 0.00 0.00 0.00 3.25
6648 8277 4.649674 GTCTACCTGAACCACCATCTCATA 59.350 45.833 0.00 0.00 0.00 2.15
6670 8299 1.526887 CACCGGCACCATATCCAGT 59.473 57.895 0.00 0.00 0.00 4.00
6671 8300 1.227943 CCACCGGCACCATATCCAG 60.228 63.158 0.00 0.00 0.00 3.86
6701 8330 9.751542 TGAAACGTCACCAAAAACATTTATATT 57.248 25.926 0.00 0.00 0.00 1.28
6763 8393 1.878088 CAAGTCACTCACAAGCTGCAT 59.122 47.619 1.02 0.00 0.00 3.96
6801 8433 4.179298 GCTATCATCAGCTCAATATCGCA 58.821 43.478 0.00 0.00 38.57 5.10
6849 8481 7.889469 ACTAAGTTCTACAATCACGGAGTAAA 58.111 34.615 0.00 0.00 41.61 2.01
6854 8486 5.970317 TGACTAAGTTCTACAATCACGGA 57.030 39.130 0.00 0.00 0.00 4.69
6900 8532 1.401931 CCGCTTTTCACTTCATGCCAG 60.402 52.381 0.00 0.00 0.00 4.85
6927 8559 7.116376 ACAAGAGATGAATTACACAACAGTACG 59.884 37.037 0.00 0.00 0.00 3.67
6971 8603 5.598416 TCACAGATTGGTCATAGTGTAGG 57.402 43.478 0.00 0.00 0.00 3.18
6982 8614 5.013079 TGAACTCTGGTAATCACAGATTGGT 59.987 40.000 2.65 0.00 43.43 3.67
6983 8615 5.491070 TGAACTCTGGTAATCACAGATTGG 58.509 41.667 2.65 0.00 43.43 3.16
6985 8617 6.773638 ACTTGAACTCTGGTAATCACAGATT 58.226 36.000 0.00 0.00 43.43 2.40
6986 8618 6.365970 ACTTGAACTCTGGTAATCACAGAT 57.634 37.500 0.00 0.00 43.43 2.90
6987 8619 5.279506 GGACTTGAACTCTGGTAATCACAGA 60.280 44.000 0.00 0.00 42.31 3.41
6988 8620 4.932200 GGACTTGAACTCTGGTAATCACAG 59.068 45.833 0.00 0.00 37.30 3.66
6989 8621 4.593206 AGGACTTGAACTCTGGTAATCACA 59.407 41.667 0.00 0.00 0.00 3.58
6990 8622 5.153950 AGGACTTGAACTCTGGTAATCAC 57.846 43.478 0.00 0.00 0.00 3.06
6991 8623 6.153000 GTCTAGGACTTGAACTCTGGTAATCA 59.847 42.308 0.00 0.00 0.00 2.57
6992 8624 6.378848 AGTCTAGGACTTGAACTCTGGTAATC 59.621 42.308 0.00 0.00 40.28 1.75
6996 8628 4.120946 AGTCTAGGACTTGAACTCTGGT 57.879 45.455 0.00 0.00 40.28 4.00
7052 8727 0.392998 ATGCACATCACGGAAGGACC 60.393 55.000 0.00 0.00 0.00 4.46
7062 8737 1.340308 CCTCCCACTGAATGCACATCA 60.340 52.381 4.16 4.16 0.00 3.07
7064 8739 0.994247 TCCTCCCACTGAATGCACAT 59.006 50.000 0.00 0.00 0.00 3.21
7065 8740 0.325933 CTCCTCCCACTGAATGCACA 59.674 55.000 0.00 0.00 0.00 4.57
7066 8741 0.615331 TCTCCTCCCACTGAATGCAC 59.385 55.000 0.00 0.00 0.00 4.57
7069 8744 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
7090 8939 0.824109 TCGCCTTCATAGTCCACAGG 59.176 55.000 0.00 0.00 0.00 4.00
7092 8941 1.204704 CAGTCGCCTTCATAGTCCACA 59.795 52.381 0.00 0.00 0.00 4.17
7095 8944 1.471676 CCACAGTCGCCTTCATAGTCC 60.472 57.143 0.00 0.00 0.00 3.85
7109 8958 3.857157 TTGACTAAAAGCTCCCACAGT 57.143 42.857 0.00 0.00 0.00 3.55
7126 8975 6.033341 CCAACTCAAAAACGAATGACTTTGA 58.967 36.000 0.00 0.00 36.59 2.69
7131 8980 7.435192 AGAAATTCCAACTCAAAAACGAATGAC 59.565 33.333 0.00 0.00 0.00 3.06
7255 9109 7.118723 ACCAATACAAGCTCATGAAAGGAATA 58.881 34.615 0.00 0.00 0.00 1.75
7326 9194 9.520204 CATTTCACTCTAAACTTTTTGTGTGAT 57.480 29.630 16.29 5.73 41.83 3.06
7330 9198 9.573133 AAGTCATTTCACTCTAAACTTTTTGTG 57.427 29.630 0.00 0.00 0.00 3.33
7331 9199 9.573133 CAAGTCATTTCACTCTAAACTTTTTGT 57.427 29.630 0.00 0.00 0.00 2.83
7341 9209 3.582647 TCTGGCCAAGTCATTTCACTCTA 59.417 43.478 7.01 0.00 0.00 2.43
7356 9224 1.035923 CTCTCTTATCGCTCTGGCCA 58.964 55.000 4.71 4.71 34.44 5.36
7357 9225 1.323412 TCTCTCTTATCGCTCTGGCC 58.677 55.000 0.00 0.00 34.44 5.36
7358 9226 2.556189 TGATCTCTCTTATCGCTCTGGC 59.444 50.000 0.00 0.00 0.00 4.85
7359 9227 4.844998 TTGATCTCTCTTATCGCTCTGG 57.155 45.455 0.00 0.00 0.00 3.86
7366 9238 6.516718 TCGGTCCAAATTGATCTCTCTTATC 58.483 40.000 0.00 0.00 0.00 1.75
7381 9253 0.109723 CCACCTTCCTTCGGTCCAAA 59.890 55.000 0.00 0.00 30.82 3.28
7384 9256 2.046217 GCCACCTTCCTTCGGTCC 60.046 66.667 0.00 0.00 30.82 4.46
7403 9275 1.201429 AGGCTGGGGTCGTTCTTGAT 61.201 55.000 0.00 0.00 0.00 2.57
7406 9278 0.185175 AAAAGGCTGGGGTCGTTCTT 59.815 50.000 0.00 0.00 0.00 2.52
7413 9285 3.173151 CAGGAAATAAAAAGGCTGGGGT 58.827 45.455 0.00 0.00 0.00 4.95
7490 9365 9.979578 GAGACTAGTAGTATGTAGTAAGCAGTA 57.020 37.037 1.27 0.00 29.34 2.74
7569 9449 3.548014 GGAATAACGGAATGGCATTGACG 60.548 47.826 19.07 22.14 0.00 4.35
7603 9483 3.700538 ACCAATTTGCCTCAGCTATCAA 58.299 40.909 0.00 0.00 40.80 2.57
7635 9515 1.089920 CAGATTCAAGCCCACTTCGG 58.910 55.000 0.00 0.00 32.29 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.