Multiple sequence alignment - TraesCS3B01G259800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G259800 chr3B 100.000 5624 0 0 1 5624 417711570 417717193 0.000000e+00 10386.0
1 TraesCS3B01G259800 chr3A 91.451 2632 123 40 716 3296 430775364 430777944 0.000000e+00 3520.0
2 TraesCS3B01G259800 chr3A 95.351 1054 41 5 3345 4392 430778044 430779095 0.000000e+00 1668.0
3 TraesCS3B01G259800 chr3A 92.181 729 34 10 4378 5104 430779115 430779822 0.000000e+00 1009.0
4 TraesCS3B01G259800 chr3A 89.820 334 25 4 5271 5596 430780434 430780766 2.420000e-113 420.0
5 TraesCS3B01G259800 chr3A 88.571 105 12 0 4013 4117 734786258 734786362 1.640000e-25 128.0
6 TraesCS3B01G259800 chr3D 94.435 1797 71 16 3316 5104 303592031 303590256 0.000000e+00 2737.0
7 TraesCS3B01G259800 chr3D 96.264 1365 33 6 716 2070 303594674 303593318 0.000000e+00 2222.0
8 TraesCS3B01G259800 chr3D 92.470 1235 45 23 2096 3297 303593324 303592105 0.000000e+00 1722.0
9 TraesCS3B01G259800 chr3D 93.519 324 19 2 7 329 303596230 303595908 1.100000e-131 481.0
10 TraesCS3B01G259800 chr3D 82.306 373 25 16 5271 5624 303589645 303589295 9.220000e-73 285.0
11 TraesCS3B01G259800 chr3D 84.249 273 30 8 5271 5535 518589165 518589432 2.600000e-63 254.0
12 TraesCS3B01G259800 chr3D 89.500 200 17 3 518 714 303594947 303594749 3.360000e-62 250.0
13 TraesCS3B01G259800 chr3D 85.321 109 14 2 4010 4117 536330574 536330681 1.660000e-20 111.0
14 TraesCS3B01G259800 chr3D 95.522 67 2 1 454 519 303595552 303595486 7.710000e-19 106.0
15 TraesCS3B01G259800 chr3D 100.000 28 0 0 548 575 322818284 322818311 1.000000e-02 52.8
16 TraesCS3B01G259800 chr5D 85.994 357 33 10 5271 5615 114007114 114007465 3.200000e-97 366.0
17 TraesCS3B01G259800 chr5D 79.065 449 71 15 5101 5540 419370360 419369926 2.560000e-73 287.0
18 TraesCS3B01G259800 chr1D 78.947 513 88 17 3421 3920 478413157 478412652 1.170000e-86 331.0
19 TraesCS3B01G259800 chr1D 77.803 437 74 20 4159 4588 478412376 478411956 1.210000e-61 248.0
20 TraesCS3B01G259800 chr1D 84.774 243 35 2 5283 5525 314769632 314769872 5.630000e-60 243.0
21 TraesCS3B01G259800 chr1D 84.375 128 17 2 1197 1321 478415258 478415131 7.650000e-24 122.0
22 TraesCS3B01G259800 chr1D 88.298 94 10 1 1012 1104 478415405 478415312 1.660000e-20 111.0
23 TraesCS3B01G259800 chr1D 97.222 36 1 0 5271 5306 484426598 484426563 1.690000e-05 62.1
24 TraesCS3B01G259800 chr5A 84.366 339 38 9 5271 5600 119221458 119221790 9.090000e-83 318.0
25 TraesCS3B01G259800 chr5A 82.653 294 47 4 5100 5392 534944369 534944659 2.010000e-64 257.0
26 TraesCS3B01G259800 chr1A 77.829 433 72 22 4159 4588 574666251 574665840 4.350000e-61 246.0
27 TraesCS3B01G259800 chr1A 85.782 211 28 2 3424 3633 574667037 574666828 7.330000e-54 222.0
28 TraesCS3B01G259800 chr1A 76.898 303 31 28 1019 1321 574669310 574669047 9.830000e-28 135.0
29 TraesCS3B01G259800 chr1B 77.442 430 84 11 4159 4583 666536437 666536016 1.570000e-60 244.0
30 TraesCS3B01G259800 chr1B 85.714 126 15 2 1196 1321 666538978 666538856 4.570000e-26 130.0
31 TraesCS3B01G259800 chr1B 85.965 114 11 5 1019 1128 666539113 666539001 3.560000e-22 117.0
32 TraesCS3B01G259800 chrUn 89.831 177 17 1 4412 4588 259903555 259903730 5.670000e-55 226.0
33 TraesCS3B01G259800 chrUn 89.831 177 17 1 4412 4588 437622877 437622702 5.670000e-55 226.0
34 TraesCS3B01G259800 chrUn 89.266 177 18 1 4412 4588 316528927 316529102 2.640000e-53 220.0
35 TraesCS3B01G259800 chrUn 89.266 177 18 1 4412 4588 357960524 357960349 2.640000e-53 220.0
36 TraesCS3B01G259800 chr2B 81.868 182 25 6 5108 5287 11300179 11300004 4.540000e-31 147.0
37 TraesCS3B01G259800 chr2B 84.483 116 17 1 1207 1321 703573539 703573654 4.610000e-21 113.0
38 TraesCS3B01G259800 chr2B 88.462 78 5 3 1041 1116 703573476 703573551 2.160000e-14 91.6
39 TraesCS3B01G259800 chr2D 88.571 105 12 0 4013 4117 141479472 141479576 1.640000e-25 128.0
40 TraesCS3B01G259800 chr2D 87.368 95 10 2 4023 4117 545598772 545598864 2.140000e-19 108.0
41 TraesCS3B01G259800 chr7D 87.368 95 10 2 4023 4117 54050332 54050424 2.140000e-19 108.0
42 TraesCS3B01G259800 chr7D 86.458 96 11 2 4018 4112 507845029 507844935 2.770000e-18 104.0
43 TraesCS3B01G259800 chr6B 85.294 102 15 0 4019 4120 126874158 126874057 7.710000e-19 106.0
44 TraesCS3B01G259800 chr6B 88.462 78 5 3 1041 1116 353789182 353789257 2.160000e-14 91.6
45 TraesCS3B01G259800 chr6B 81.319 91 9 4 379 461 496147894 496147984 3.640000e-07 67.6
46 TraesCS3B01G259800 chr7A 87.179 78 6 3 1041 1116 337923170 337923245 1.000000e-12 86.1
47 TraesCS3B01G259800 chr4D 84.783 92 7 6 1041 1128 12832666 12832754 1.000000e-12 86.1
48 TraesCS3B01G259800 chr4B 86.957 69 9 0 1253 1321 509256580 509256648 1.680000e-10 78.7
49 TraesCS3B01G259800 chr6D 100.000 28 0 0 548 575 119364163 119364136 1.000000e-02 52.8
50 TraesCS3B01G259800 chr4A 100.000 28 0 0 548 575 70611587 70611560 1.000000e-02 52.8
51 TraesCS3B01G259800 chr2A 100.000 28 0 0 548 575 258442098 258442125 1.000000e-02 52.8
52 TraesCS3B01G259800 chr2A 100.000 28 0 0 548 575 731131177 731131204 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G259800 chr3B 417711570 417717193 5623 False 10386.000000 10386 100.000000 1 5624 1 chr3B.!!$F1 5623
1 TraesCS3B01G259800 chr3A 430775364 430780766 5402 False 1654.250000 3520 92.200750 716 5596 4 chr3A.!!$F2 4880
2 TraesCS3B01G259800 chr3D 303589295 303596230 6935 True 1114.714286 2737 92.002286 7 5624 7 chr3D.!!$R1 5617
3 TraesCS3B01G259800 chr1D 478411956 478415405 3449 True 203.000000 331 82.355750 1012 4588 4 chr1D.!!$R2 3576
4 TraesCS3B01G259800 chr1A 574665840 574669310 3470 True 201.000000 246 80.169667 1019 4588 3 chr1A.!!$R1 3569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.043334 AGTGGGTGTGGCTAGAGGAT 59.957 55.0 0.00 0.0 0.00 3.24 F
412 414 0.171455 GTCCCGTGCACACTAGAGAG 59.829 60.0 18.64 0.0 0.00 3.20 F
419 421 0.171455 GCACACTAGAGAGTCCGTGG 59.829 60.0 0.00 0.0 32.66 4.94 F
626 1402 0.326238 CAGGGCTAGGGTTACCTCCA 60.326 60.0 0.00 0.0 46.95 3.86 F
632 1408 0.396695 TAGGGTTACCTCCAGAGCCG 60.397 60.0 0.00 0.0 46.95 5.52 F
2141 3597 0.028770 TTGACTTGCTCGTTTTGCCG 59.971 50.0 0.00 0.0 0.00 5.69 F
2517 4121 0.738975 CATTGCCTGCCATGTCTCAG 59.261 55.0 0.00 0.0 0.00 3.35 F
3006 4622 1.879575 TGTTCCCATGGCTAGCTAGT 58.120 50.0 21.62 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1767 3223 0.321122 GGGGCTCATCATAAGGCGAG 60.321 60.000 0.00 0.0 40.05 5.03 R
1812 3268 0.609131 TTGCCTAAAGGACCAGCTGC 60.609 55.000 8.66 0.0 37.39 5.25 R
1999 3455 0.958091 TTGAATTTCCTGGTGGCACG 59.042 50.000 12.17 0.0 0.00 5.34 R
2018 3474 3.791973 TGTTTTTGCAACAGACCGAAT 57.208 38.095 0.00 0.0 0.00 3.34 R
2378 3982 4.034975 GTGCATTGAGAAGAGTATTGGCTC 59.965 45.833 0.00 0.0 35.82 4.70 R
3868 6163 1.077357 AAGTGTGCCCGTTTCACCA 60.077 52.632 0.00 0.0 33.71 4.17 R
3972 6269 3.494251 GGCGAAACAAAGAAATGCAACAT 59.506 39.130 0.00 0.0 0.00 2.71 R
4825 7327 0.179018 GCAAGACCACCTGTGACCTT 60.179 55.000 0.00 0.0 0.00 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.753272 CGACAACCACTTCCAGATCAAAT 59.247 43.478 0.00 0.00 0.00 2.32
51 52 0.043334 AGTGGGTGTGGCTAGAGGAT 59.957 55.000 0.00 0.00 0.00 3.24
52 53 0.912486 GTGGGTGTGGCTAGAGGATT 59.088 55.000 0.00 0.00 0.00 3.01
58 59 0.249657 GTGGCTAGAGGATTCCTGCG 60.250 60.000 10.74 0.00 31.76 5.18
86 88 8.597662 TGTTCTACGCAGTTTTACTCTTAATT 57.402 30.769 0.00 0.00 37.78 1.40
87 89 9.695526 TGTTCTACGCAGTTTTACTCTTAATTA 57.304 29.630 0.00 0.00 37.78 1.40
105 107 8.035394 TCTTAATTATGATAGAATGGCGAGACC 58.965 37.037 0.00 0.00 39.84 3.85
106 108 4.537135 TTATGATAGAATGGCGAGACCC 57.463 45.455 0.00 0.00 37.83 4.46
131 133 7.136119 CGATCTAGCAAACTAGGAAAGTCTAG 58.864 42.308 0.00 0.00 45.20 2.43
143 145 8.361889 ACTAGGAAAGTCTAGAACTCAAAGAAC 58.638 37.037 0.00 0.00 39.14 3.01
184 186 1.348775 GGAGGGTGGAGAAGATGGGG 61.349 65.000 0.00 0.00 0.00 4.96
225 227 3.521560 CCATCTTCGAAGAAATCCACGA 58.478 45.455 30.18 6.19 45.90 4.35
245 247 2.689691 GGGGTAAGGCTCCATGGCA 61.690 63.158 6.96 0.00 44.55 4.92
250 252 1.971505 TAAGGCTCCATGGCACGAGG 61.972 60.000 6.96 5.94 44.55 4.63
278 280 1.036707 AAGAGGCTAGAGGCGATGAC 58.963 55.000 0.00 0.00 46.23 3.06
329 331 1.625417 GGGGCAATTGGGTGGGAATG 61.625 60.000 7.72 0.00 0.00 2.67
330 332 0.617249 GGGCAATTGGGTGGGAATGA 60.617 55.000 7.72 0.00 0.00 2.57
331 333 1.274712 GGCAATTGGGTGGGAATGAA 58.725 50.000 7.72 0.00 0.00 2.57
332 334 1.066215 GGCAATTGGGTGGGAATGAAC 60.066 52.381 7.72 0.00 0.00 3.18
333 335 1.066215 GCAATTGGGTGGGAATGAACC 60.066 52.381 7.72 0.00 35.59 3.62
342 344 2.730934 GGGAATGAACCCTAACTCCC 57.269 55.000 0.00 0.00 45.90 4.30
343 345 1.214673 GGGAATGAACCCTAACTCCCC 59.785 57.143 0.00 0.00 45.90 4.81
344 346 1.214673 GGAATGAACCCTAACTCCCCC 59.785 57.143 0.00 0.00 0.00 5.40
345 347 0.916809 AATGAACCCTAACTCCCCCG 59.083 55.000 0.00 0.00 0.00 5.73
346 348 1.632965 ATGAACCCTAACTCCCCCGC 61.633 60.000 0.00 0.00 0.00 6.13
347 349 3.381333 GAACCCTAACTCCCCCGCG 62.381 68.421 0.00 0.00 0.00 6.46
359 361 4.726304 CCCGCGCCCCACCTTTTA 62.726 66.667 0.00 0.00 0.00 1.52
360 362 3.131478 CCGCGCCCCACCTTTTAG 61.131 66.667 0.00 0.00 0.00 1.85
361 363 3.131478 CGCGCCCCACCTTTTAGG 61.131 66.667 0.00 0.00 42.49 2.69
362 364 2.754254 GCGCCCCACCTTTTAGGG 60.754 66.667 0.00 0.00 40.58 3.53
366 368 2.362963 CCCACCTTTTAGGGGCCC 59.637 66.667 17.12 17.12 37.50 5.80
367 369 2.246126 CCCACCTTTTAGGGGCCCT 61.246 63.158 31.38 31.38 37.50 5.19
368 370 0.922243 CCCACCTTTTAGGGGCCCTA 60.922 60.000 28.78 28.78 37.50 3.53
369 371 1.004436 CCACCTTTTAGGGGCCCTAA 58.996 55.000 36.01 36.01 43.47 2.69
374 376 3.000658 TTAGGGGCCCTAAACCGC 58.999 61.111 37.16 2.05 42.38 5.68
375 377 1.924423 TTAGGGGCCCTAAACCGCA 60.924 57.895 37.16 18.16 42.38 5.69
376 378 2.200923 TTAGGGGCCCTAAACCGCAC 62.201 60.000 37.16 0.26 42.38 5.34
377 379 4.354162 GGGGCCCTAAACCGCACA 62.354 66.667 24.38 0.00 39.80 4.57
378 380 3.060000 GGGCCCTAAACCGCACAC 61.060 66.667 17.04 0.00 0.00 3.82
379 381 3.060000 GGCCCTAAACCGCACACC 61.060 66.667 0.00 0.00 0.00 4.16
380 382 3.060000 GCCCTAAACCGCACACCC 61.060 66.667 0.00 0.00 0.00 4.61
381 383 2.360726 CCCTAAACCGCACACCCC 60.361 66.667 0.00 0.00 0.00 4.95
382 384 2.432563 CCTAAACCGCACACCCCA 59.567 61.111 0.00 0.00 0.00 4.96
383 385 1.001393 CCTAAACCGCACACCCCAT 60.001 57.895 0.00 0.00 0.00 4.00
384 386 1.312371 CCTAAACCGCACACCCCATG 61.312 60.000 0.00 0.00 0.00 3.66
385 387 0.608035 CTAAACCGCACACCCCATGT 60.608 55.000 0.00 0.00 44.81 3.21
407 409 3.315949 GGGGTCCCGTGCACACTA 61.316 66.667 18.64 0.00 0.00 2.74
408 410 2.264794 GGGTCCCGTGCACACTAG 59.735 66.667 18.64 0.00 0.00 2.57
409 411 2.280552 GGGTCCCGTGCACACTAGA 61.281 63.158 18.64 4.30 0.00 2.43
410 412 1.215647 GGTCCCGTGCACACTAGAG 59.784 63.158 18.64 0.00 0.00 2.43
411 413 1.248785 GGTCCCGTGCACACTAGAGA 61.249 60.000 18.64 0.51 0.00 3.10
412 414 0.171455 GTCCCGTGCACACTAGAGAG 59.829 60.000 18.64 0.00 0.00 3.20
413 415 0.251209 TCCCGTGCACACTAGAGAGT 60.251 55.000 18.64 0.00 35.80 3.24
414 416 0.171455 CCCGTGCACACTAGAGAGTC 59.829 60.000 18.64 0.00 31.73 3.36
415 417 0.171455 CCGTGCACACTAGAGAGTCC 59.829 60.000 18.64 0.00 31.73 3.85
416 418 0.179187 CGTGCACACTAGAGAGTCCG 60.179 60.000 18.64 0.00 31.73 4.79
417 419 0.882474 GTGCACACTAGAGAGTCCGT 59.118 55.000 13.17 0.00 31.73 4.69
418 420 0.881796 TGCACACTAGAGAGTCCGTG 59.118 55.000 0.00 0.00 34.31 4.94
419 421 0.171455 GCACACTAGAGAGTCCGTGG 59.829 60.000 0.00 0.00 32.66 4.94
420 422 0.811915 CACACTAGAGAGTCCGTGGG 59.188 60.000 0.00 0.00 31.73 4.61
421 423 0.966370 ACACTAGAGAGTCCGTGGGC 60.966 60.000 0.00 0.00 31.73 5.36
422 424 0.965866 CACTAGAGAGTCCGTGGGCA 60.966 60.000 0.00 0.00 31.73 5.36
423 425 0.966370 ACTAGAGAGTCCGTGGGCAC 60.966 60.000 0.00 0.00 0.00 5.01
446 448 4.320456 CCCTGTGTGCACGAGCCT 62.320 66.667 13.13 0.00 41.13 4.58
447 449 3.046087 CCTGTGTGCACGAGCCTG 61.046 66.667 13.13 4.21 41.13 4.85
448 450 2.280389 CTGTGTGCACGAGCCTGT 60.280 61.111 13.13 0.00 41.13 4.00
449 451 2.588596 TGTGTGCACGAGCCTGTG 60.589 61.111 13.13 1.69 42.81 3.66
450 452 3.349006 GTGTGCACGAGCCTGTGG 61.349 66.667 13.13 0.00 40.26 4.17
451 453 4.624364 TGTGCACGAGCCTGTGGG 62.624 66.667 13.13 0.00 40.26 4.61
463 696 3.733344 CTGTGGGCACGGGGTATCG 62.733 68.421 0.00 0.00 34.12 2.92
466 699 3.925090 GGGCACGGGGTATCGAGG 61.925 72.222 0.00 0.00 0.00 4.63
469 702 2.443390 CACGGGGTATCGAGGGGT 60.443 66.667 0.00 0.00 0.00 4.95
473 706 0.463116 CGGGGTATCGAGGGGTTTTG 60.463 60.000 0.00 0.00 0.00 2.44
474 707 0.913924 GGGGTATCGAGGGGTTTTGA 59.086 55.000 0.00 0.00 0.00 2.69
475 708 1.134189 GGGGTATCGAGGGGTTTTGAG 60.134 57.143 0.00 0.00 0.00 3.02
519 753 4.040706 ACGGTTGAGTGTAAACCCTTATCA 59.959 41.667 0.00 0.00 43.55 2.15
520 754 4.998672 CGGTTGAGTGTAAACCCTTATCAA 59.001 41.667 0.00 0.00 43.55 2.57
521 755 5.121768 CGGTTGAGTGTAAACCCTTATCAAG 59.878 44.000 0.00 0.00 43.55 3.02
522 756 6.002082 GGTTGAGTGTAAACCCTTATCAAGT 58.998 40.000 0.00 0.00 41.10 3.16
524 758 6.681729 TGAGTGTAAACCCTTATCAAGTCT 57.318 37.500 0.00 0.00 0.00 3.24
525 759 7.074653 TGAGTGTAAACCCTTATCAAGTCTT 57.925 36.000 0.00 0.00 0.00 3.01
526 760 8.197592 TGAGTGTAAACCCTTATCAAGTCTTA 57.802 34.615 0.00 0.00 0.00 2.10
587 1360 2.975799 GTTTTGCGCCGGACAGGA 60.976 61.111 5.05 0.00 45.00 3.86
593 1366 2.750888 GCGCCGGACAGGAATTCAC 61.751 63.158 5.05 0.00 45.00 3.18
608 1382 0.895559 TTCACAGAGAGAGGCGCTCA 60.896 55.000 20.44 0.00 46.45 4.26
626 1402 0.326238 CAGGGCTAGGGTTACCTCCA 60.326 60.000 0.00 0.00 46.95 3.86
632 1408 0.396695 TAGGGTTACCTCCAGAGCCG 60.397 60.000 0.00 0.00 46.95 5.52
671 1447 2.502130 GGAGGAAGAGGGGAAACTAGTG 59.498 54.545 0.00 0.00 0.00 2.74
678 1454 3.328050 AGAGGGGAAACTAGTGTCTTTGG 59.672 47.826 12.86 0.00 0.00 3.28
681 1457 3.559384 GGGGAAACTAGTGTCTTTGGAGG 60.559 52.174 12.86 0.00 0.00 4.30
689 1465 5.823045 ACTAGTGTCTTTGGAGGAAGTTTTG 59.177 40.000 0.00 0.00 0.00 2.44
690 1466 3.381590 AGTGTCTTTGGAGGAAGTTTTGC 59.618 43.478 0.00 0.00 0.00 3.68
691 1467 3.130340 GTGTCTTTGGAGGAAGTTTTGCA 59.870 43.478 0.00 0.00 0.00 4.08
693 1469 4.112634 GTCTTTGGAGGAAGTTTTGCAAC 58.887 43.478 0.00 0.00 0.00 4.17
740 1589 0.623723 TACATGCCCCAAGGACTTCC 59.376 55.000 0.00 0.00 33.47 3.46
868 1717 2.108566 CCTCTGCCTCGCCATCAG 59.891 66.667 0.00 0.00 0.00 2.90
889 1739 3.451141 CTAGCTATAGCATAGCCAGGC 57.549 52.381 26.07 1.84 45.16 4.85
890 1740 0.908198 AGCTATAGCATAGCCAGGCC 59.092 55.000 26.07 0.00 45.16 5.19
891 1741 0.615331 GCTATAGCATAGCCAGGCCA 59.385 55.000 20.01 0.00 41.59 5.36
949 1808 3.717294 ACCAGACGCCCACCCATC 61.717 66.667 0.00 0.00 0.00 3.51
1417 2373 1.211949 ACAGTGCCACTTAGTGTTGGT 59.788 47.619 11.68 0.00 0.00 3.67
1642 2598 5.573337 AATTGCTAAAGTTGATGCCTCTC 57.427 39.130 0.00 0.00 0.00 3.20
1688 2644 0.881796 GTGACTTGGGGTTGCTAAGC 59.118 55.000 0.00 0.00 0.00 3.09
1746 3201 7.998580 TCGAACCAACCAACTTAAAGTTTTAT 58.001 30.769 0.00 0.00 36.03 1.40
1747 3202 8.468399 TCGAACCAACCAACTTAAAGTTTTATT 58.532 29.630 0.00 0.00 36.03 1.40
1748 3203 9.733219 CGAACCAACCAACTTAAAGTTTTATTA 57.267 29.630 0.00 0.00 36.03 0.98
1767 3223 5.954296 ATTAGTAGGCATGATTCATGTGC 57.046 39.130 23.86 14.51 43.10 4.57
1769 3225 3.474600 AGTAGGCATGATTCATGTGCTC 58.525 45.455 23.86 14.06 43.10 4.26
1788 3244 0.976641 CGCCTTATGATGAGCCCCTA 59.023 55.000 0.00 0.00 0.00 3.53
1812 3268 9.311916 CTAGAAGTTGGAGATAACAAATCAGAG 57.688 37.037 0.00 0.00 33.02 3.35
1865 3321 0.666374 GCAACGCACCTGGTACTTTT 59.334 50.000 0.00 0.00 0.00 2.27
1949 3405 3.797039 CATAATCACATGACACGGGACT 58.203 45.455 0.00 0.00 0.00 3.85
1992 3448 3.753272 CCTGTCCACAACTTTATCACCTG 59.247 47.826 0.00 0.00 0.00 4.00
1999 3455 3.441572 ACAACTTTATCACCTGCTGCATC 59.558 43.478 1.31 0.00 0.00 3.91
2018 3474 0.958091 CGTGCCACCAGGAAATTCAA 59.042 50.000 0.00 0.00 36.89 2.69
2051 3507 7.914465 TGTTGCAAAAACAATAAAATCCTCAC 58.086 30.769 0.00 0.00 0.00 3.51
2073 3529 7.307694 TCACTTAGCTTCATAAAATGCAACTG 58.692 34.615 0.00 0.00 0.00 3.16
2074 3530 6.529125 CACTTAGCTTCATAAAATGCAACTGG 59.471 38.462 0.00 0.00 0.00 4.00
2075 3531 6.434028 ACTTAGCTTCATAAAATGCAACTGGA 59.566 34.615 0.00 0.00 0.00 3.86
2076 3532 5.726980 AGCTTCATAAAATGCAACTGGAA 57.273 34.783 0.00 0.00 0.00 3.53
2077 3533 6.100404 AGCTTCATAAAATGCAACTGGAAA 57.900 33.333 0.00 0.00 0.00 3.13
2078 3534 6.523840 AGCTTCATAAAATGCAACTGGAAAA 58.476 32.000 0.00 0.00 0.00 2.29
2079 3535 6.424812 AGCTTCATAAAATGCAACTGGAAAAC 59.575 34.615 0.00 0.00 0.00 2.43
2080 3536 6.347644 GCTTCATAAAATGCAACTGGAAAACC 60.348 38.462 0.00 0.00 0.00 3.27
2081 3537 6.166984 TCATAAAATGCAACTGGAAAACCA 57.833 33.333 0.00 0.00 0.00 3.67
2082 3538 6.767456 TCATAAAATGCAACTGGAAAACCAT 58.233 32.000 0.00 0.00 0.00 3.55
2083 3539 7.901029 TCATAAAATGCAACTGGAAAACCATA 58.099 30.769 0.00 0.00 0.00 2.74
2084 3540 8.034215 TCATAAAATGCAACTGGAAAACCATAG 58.966 33.333 0.00 0.00 0.00 2.23
2085 3541 3.874392 ATGCAACTGGAAAACCATAGC 57.126 42.857 0.00 0.00 0.00 2.97
2086 3542 2.591923 TGCAACTGGAAAACCATAGCA 58.408 42.857 0.00 0.00 0.00 3.49
2087 3543 3.164268 TGCAACTGGAAAACCATAGCAT 58.836 40.909 0.00 0.00 0.00 3.79
2088 3544 4.339748 TGCAACTGGAAAACCATAGCATA 58.660 39.130 0.00 0.00 0.00 3.14
2089 3545 4.955450 TGCAACTGGAAAACCATAGCATAT 59.045 37.500 0.00 0.00 0.00 1.78
2090 3546 5.163530 TGCAACTGGAAAACCATAGCATATG 60.164 40.000 0.00 0.00 0.00 1.78
2101 3557 4.577693 ACCATAGCATATGTGTCAAAGCAG 59.422 41.667 4.29 0.00 0.00 4.24
2141 3597 0.028770 TTGACTTGCTCGTTTTGCCG 59.971 50.000 0.00 0.00 0.00 5.69
2161 3617 6.451393 TGCCGTTTTTCTACTGCATTTTAAT 58.549 32.000 0.00 0.00 34.06 1.40
2378 3982 7.140705 TGTAAAGAATTGCTGTTCAACATGAG 58.859 34.615 0.00 0.00 37.53 2.90
2517 4121 0.738975 CATTGCCTGCCATGTCTCAG 59.261 55.000 0.00 0.00 0.00 3.35
2812 4426 7.388224 TCAATTTCCATCCATGTTTGTTTCATG 59.612 33.333 0.00 0.00 41.34 3.07
3006 4622 1.879575 TGTTCCCATGGCTAGCTAGT 58.120 50.000 21.62 0.00 0.00 2.57
3011 4627 3.587498 TCCCATGGCTAGCTAGTTATGT 58.413 45.455 24.79 8.62 0.00 2.29
3018 4634 4.230657 GGCTAGCTAGTTATGTGTCATCG 58.769 47.826 21.62 0.00 0.00 3.84
3048 4664 6.102663 ACAAGTAGTTGACTATTGCTAGCTG 58.897 40.000 17.23 6.20 37.44 4.24
3053 4669 8.311836 AGTAGTTGACTATTGCTAGCTGTTTTA 58.688 33.333 17.23 0.00 36.27 1.52
3093 4709 8.565416 CATATAATTCCCGTAAAAGAAGTTCCC 58.435 37.037 0.00 0.00 0.00 3.97
3094 4710 3.860968 TTCCCGTAAAAGAAGTTCCCA 57.139 42.857 0.00 0.00 0.00 4.37
3095 4711 4.376225 TTCCCGTAAAAGAAGTTCCCAT 57.624 40.909 0.00 0.00 0.00 4.00
3097 4713 5.502089 TCCCGTAAAAGAAGTTCCCATAA 57.498 39.130 0.00 0.00 0.00 1.90
3098 4714 6.069705 TCCCGTAAAAGAAGTTCCCATAAT 57.930 37.500 0.00 0.00 0.00 1.28
3101 4717 8.108364 TCCCGTAAAAGAAGTTCCCATAATTTA 58.892 33.333 0.00 0.00 0.00 1.40
3117 4733 7.654520 CCCATAATTTAATTCAAGGCATGACAG 59.345 37.037 0.00 0.00 37.92 3.51
3118 4734 8.415553 CCATAATTTAATTCAAGGCATGACAGA 58.584 33.333 0.00 0.00 37.92 3.41
3149 4765 7.425606 TCAAAGTTTACATGCTTTTCTCTTCC 58.574 34.615 0.00 0.00 33.19 3.46
3150 4766 5.613358 AGTTTACATGCTTTTCTCTTCCG 57.387 39.130 0.00 0.00 0.00 4.30
3153 4769 3.356529 ACATGCTTTTCTCTTCCGGAT 57.643 42.857 4.15 0.00 0.00 4.18
3155 4771 4.843728 ACATGCTTTTCTCTTCCGGATAA 58.156 39.130 4.15 0.00 0.00 1.75
3156 4772 5.253330 ACATGCTTTTCTCTTCCGGATAAA 58.747 37.500 4.15 1.06 0.00 1.40
3157 4773 5.888161 ACATGCTTTTCTCTTCCGGATAAAT 59.112 36.000 4.15 0.00 0.00 1.40
3158 4774 5.818136 TGCTTTTCTCTTCCGGATAAATG 57.182 39.130 4.15 7.64 0.00 2.32
3159 4775 5.496556 TGCTTTTCTCTTCCGGATAAATGA 58.503 37.500 4.15 0.00 0.00 2.57
3163 4779 7.433425 GCTTTTCTCTTCCGGATAAATGAATTG 59.567 37.037 4.15 3.93 0.00 2.32
3164 4780 7.938140 TTTCTCTTCCGGATAAATGAATTGT 57.062 32.000 4.15 0.00 0.00 2.71
3165 4781 7.938140 TTCTCTTCCGGATAAATGAATTGTT 57.062 32.000 4.15 0.00 0.00 2.83
3166 4782 9.456147 TTTCTCTTCCGGATAAATGAATTGTTA 57.544 29.630 4.15 0.00 0.00 2.41
3168 4784 9.627123 TCTCTTCCGGATAAATGAATTGTTATT 57.373 29.630 4.15 0.00 0.00 1.40
3173 4789 9.073475 TCCGGATAAATGAATTGTTATTAAGGG 57.927 33.333 0.00 0.00 0.00 3.95
3175 4791 9.893305 CGGATAAATGAATTGTTATTAAGGGAC 57.107 33.333 0.00 0.00 0.00 4.46
3178 4794 9.722317 ATAAATGAATTGTTATTAAGGGACCCA 57.278 29.630 14.60 0.00 0.00 4.51
3179 4795 8.622572 AAATGAATTGTTATTAAGGGACCCAT 57.377 30.769 14.60 2.56 0.00 4.00
3180 4796 7.601705 ATGAATTGTTATTAAGGGACCCATG 57.398 36.000 14.60 0.00 0.00 3.66
3181 4797 6.736581 TGAATTGTTATTAAGGGACCCATGA 58.263 36.000 14.60 0.00 0.00 3.07
3182 4798 6.605594 TGAATTGTTATTAAGGGACCCATGAC 59.394 38.462 14.60 5.32 0.00 3.06
3233 4874 8.600625 TCCGAATATTAATTGACTTTCTCAACG 58.399 33.333 0.00 0.00 41.87 4.10
3240 4881 3.026630 TGACTTTCTCAACGCTAGTGG 57.973 47.619 8.42 0.00 0.00 4.00
3245 4886 4.879545 ACTTTCTCAACGCTAGTGGAAAAA 59.120 37.500 8.42 0.00 28.18 1.94
3249 4897 5.060506 TCTCAACGCTAGTGGAAAAATTGA 58.939 37.500 8.42 6.44 28.18 2.57
3253 4901 7.206687 TCAACGCTAGTGGAAAAATTGATTTT 58.793 30.769 8.42 0.00 43.85 1.82
3256 4904 5.925969 CGCTAGTGGAAAAATTGATTTTGGT 59.074 36.000 2.71 0.00 41.27 3.67
3257 4905 7.087639 CGCTAGTGGAAAAATTGATTTTGGTA 58.912 34.615 2.71 0.00 41.27 3.25
3258 4906 7.596995 CGCTAGTGGAAAAATTGATTTTGGTAA 59.403 33.333 2.71 0.00 41.27 2.85
3259 4907 9.435688 GCTAGTGGAAAAATTGATTTTGGTAAT 57.564 29.630 2.71 0.00 41.27 1.89
3262 4910 9.418045 AGTGGAAAAATTGATTTTGGTAATACG 57.582 29.630 2.71 0.00 41.27 3.06
3263 4911 8.652463 GTGGAAAAATTGATTTTGGTAATACGG 58.348 33.333 2.71 0.00 41.27 4.02
3264 4912 7.819900 TGGAAAAATTGATTTTGGTAATACGGG 59.180 33.333 2.71 0.00 41.27 5.28
3296 4959 5.997746 GCTCCTATTTTGGTGTAGCATATGA 59.002 40.000 6.97 0.00 0.00 2.15
3297 4960 6.073003 GCTCCTATTTTGGTGTAGCATATGAC 60.073 42.308 6.97 0.00 0.00 3.06
3299 4962 6.992123 TCCTATTTTGGTGTAGCATATGACAG 59.008 38.462 6.97 0.00 0.00 3.51
3305 4968 4.019771 TGGTGTAGCATATGACAGGTTTGA 60.020 41.667 6.97 0.00 0.00 2.69
3308 4971 6.765989 GGTGTAGCATATGACAGGTTTGATAA 59.234 38.462 6.97 0.00 0.00 1.75
3309 4972 7.445402 GGTGTAGCATATGACAGGTTTGATAAT 59.555 37.037 6.97 0.00 0.00 1.28
3417 5689 7.244192 GCTGTCCTAACAATATGTTGAACTTC 58.756 38.462 9.40 0.00 41.30 3.01
3418 5690 7.359262 TGTCCTAACAATATGTTGAACTTCG 57.641 36.000 9.40 0.00 41.30 3.79
3677 5949 3.245284 TCGTTTTCTGCGAAGTTCTTCTG 59.755 43.478 10.24 5.78 35.28 3.02
3679 5951 4.274865 GTTTTCTGCGAAGTTCTTCTGTG 58.725 43.478 10.24 1.68 0.00 3.66
3688 5960 4.082190 CGAAGTTCTTCTGTGATGTCCCTA 60.082 45.833 10.24 0.00 0.00 3.53
3716 5988 2.420687 GGGAAGGTCTCATTGCTACCTG 60.421 54.545 9.66 0.00 42.86 4.00
3868 6163 4.804261 GCTTCAAACCCTAGTGACATGACT 60.804 45.833 0.00 0.00 0.00 3.41
3972 6269 5.186256 TCAAATATGTCTAAGTTGGGCCA 57.814 39.130 0.00 0.00 0.00 5.36
4026 6330 5.616975 ATGGATAGTACTACCTCCATCCA 57.383 43.478 23.80 22.01 43.39 3.41
4193 6654 5.440610 GTCCTGAATGGTCATCCTTACAAT 58.559 41.667 0.00 0.00 37.07 2.71
4223 6684 4.887071 TGCGATGTTTATAGCTTTGGGATT 59.113 37.500 0.00 0.00 36.11 3.01
4268 6729 2.224378 CGACATGCCATATCCTGACCTT 60.224 50.000 0.00 0.00 0.00 3.50
4640 7140 2.203451 ACGGTCTGGTCTGACGGT 60.203 61.111 12.75 12.75 42.80 4.83
4647 7147 1.456892 TGGTCTGACGGTGTCACCT 60.457 57.895 19.82 7.04 37.67 4.00
4648 7148 1.006102 GGTCTGACGGTGTCACCTG 60.006 63.158 19.82 14.90 37.67 4.00
4649 7149 1.461091 GGTCTGACGGTGTCACCTGA 61.461 60.000 19.82 9.56 37.67 3.86
4650 7150 0.603569 GTCTGACGGTGTCACCTGAT 59.396 55.000 19.82 5.26 37.67 2.90
4689 7189 9.629878 ATCTTAGTGTAATACTACTACTGCACT 57.370 33.333 0.00 0.00 41.48 4.40
4690 7190 9.107177 TCTTAGTGTAATACTACTACTGCACTC 57.893 37.037 0.00 0.00 41.48 3.51
4691 7191 9.111613 CTTAGTGTAATACTACTACTGCACTCT 57.888 37.037 0.00 0.00 41.48 3.24
4704 7204 3.756963 ACTGCACTCTACTAATCACGTCA 59.243 43.478 0.00 0.00 0.00 4.35
4707 7207 4.142665 TGCACTCTACTAATCACGTCAGTC 60.143 45.833 0.00 0.00 0.00 3.51
4717 7217 3.610040 TCACGTCAGTCATGGCTAATT 57.390 42.857 0.00 0.00 0.00 1.40
4755 7255 7.412672 CGCTTCATCTCATCATTGTATGTATGG 60.413 40.741 0.00 0.00 0.00 2.74
4771 7271 0.255890 ATGGCTTGTGCGAACCCTAT 59.744 50.000 0.00 0.00 40.82 2.57
4789 7289 1.648302 ATTGCCTGGCATGCCCTAGA 61.648 55.000 33.44 14.41 38.76 2.43
4825 7327 0.191064 AGTTGAGTCTGACAGGGGGA 59.809 55.000 10.88 0.00 0.00 4.81
4843 7345 1.543429 GGAAGGTCACAGGTGGTCTTG 60.543 57.143 10.98 0.00 0.00 3.02
4845 7347 1.600916 GGTCACAGGTGGTCTTGCC 60.601 63.158 0.00 0.00 37.90 4.52
4849 7351 2.738521 CAGGTGGTCTTGCCGTCG 60.739 66.667 0.00 0.00 41.21 5.12
4947 7449 1.139163 CCGTTTGGAATGCAACTTGC 58.861 50.000 6.82 6.82 40.26 4.01
5027 7529 1.463444 GTCTGTGTTGTATTGGGCGTC 59.537 52.381 0.00 0.00 0.00 5.19
5028 7530 0.442310 CTGTGTTGTATTGGGCGTCG 59.558 55.000 0.00 0.00 0.00 5.12
5060 7562 2.107366 CACCGATTTTTGCCCCCTAAT 58.893 47.619 0.00 0.00 0.00 1.73
5103 8082 4.525467 AGCCTGGCTGCAATGAAA 57.475 50.000 22.71 0.00 37.57 2.69
5123 8102 5.009911 TGAAATGATTGGTGAACTCAAGTGG 59.990 40.000 0.00 0.00 0.00 4.00
5127 8106 1.896220 TGGTGAACTCAAGTGGCATC 58.104 50.000 0.00 0.00 0.00 3.91
5130 8109 0.396435 TGAACTCAAGTGGCATCGGT 59.604 50.000 0.00 0.00 0.00 4.69
5133 8112 1.557099 ACTCAAGTGGCATCGGTAGA 58.443 50.000 0.00 0.00 0.00 2.59
5137 8116 0.249398 AAGTGGCATCGGTAGACACC 59.751 55.000 5.26 0.00 41.93 4.16
5185 8164 2.887738 AAAAGTGGGTTGGGCTGGCA 62.888 55.000 2.88 0.00 0.00 4.92
5187 8166 2.604382 GTGGGTTGGGCTGGCATT 60.604 61.111 2.88 0.00 0.00 3.56
5194 8173 0.332293 TTGGGCTGGCATTCTCATGA 59.668 50.000 2.88 0.00 31.07 3.07
5215 8194 3.947910 AAATGGTCGTAGTTCTTCGGA 57.052 42.857 0.00 0.00 0.00 4.55
5260 8239 1.002624 CACCGCCTTGCCCTTCTTA 60.003 57.895 0.00 0.00 0.00 2.10
5287 8266 0.895559 CAACCACCTCCTTGCCCTTC 60.896 60.000 0.00 0.00 0.00 3.46
5288 8267 1.068352 AACCACCTCCTTGCCCTTCT 61.068 55.000 0.00 0.00 0.00 2.85
5289 8268 1.068352 ACCACCTCCTTGCCCTTCTT 61.068 55.000 0.00 0.00 0.00 2.52
5290 8269 0.610232 CCACCTCCTTGCCCTTCTTG 60.610 60.000 0.00 0.00 0.00 3.02
5291 8270 0.111253 CACCTCCTTGCCCTTCTTGT 59.889 55.000 0.00 0.00 0.00 3.16
5292 8271 0.402121 ACCTCCTTGCCCTTCTTGTC 59.598 55.000 0.00 0.00 0.00 3.18
5293 8272 0.674895 CCTCCTTGCCCTTCTTGTCG 60.675 60.000 0.00 0.00 0.00 4.35
5294 8273 0.674895 CTCCTTGCCCTTCTTGTCGG 60.675 60.000 0.00 0.00 0.00 4.79
5295 8274 2.335712 CCTTGCCCTTCTTGTCGGC 61.336 63.158 0.00 0.00 43.32 5.54
5296 8275 2.282180 TTGCCCTTCTTGTCGGCC 60.282 61.111 0.00 0.00 42.29 6.13
5297 8276 3.126703 TTGCCCTTCTTGTCGGCCA 62.127 57.895 2.24 0.00 42.29 5.36
5298 8277 3.056328 GCCCTTCTTGTCGGCCAC 61.056 66.667 2.24 0.25 36.63 5.01
5299 8278 2.429930 CCCTTCTTGTCGGCCACA 59.570 61.111 2.24 3.42 0.00 4.17
5300 8279 1.228124 CCCTTCTTGTCGGCCACAA 60.228 57.895 16.56 16.56 43.12 3.33
5301 8280 1.515521 CCCTTCTTGTCGGCCACAAC 61.516 60.000 14.38 5.04 40.29 3.32
5302 8281 1.515521 CCTTCTTGTCGGCCACAACC 61.516 60.000 14.38 0.00 40.29 3.77
5303 8282 0.817634 CTTCTTGTCGGCCACAACCA 60.818 55.000 14.38 4.50 40.29 3.67
5304 8283 1.098712 TTCTTGTCGGCCACAACCAC 61.099 55.000 14.38 0.00 40.29 4.16
5305 8284 2.517402 TTGTCGGCCACAACCACC 60.517 61.111 14.38 0.00 40.29 4.61
5306 8285 2.958578 CTTGTCGGCCACAACCACCT 62.959 60.000 14.38 0.00 40.29 4.00
5307 8286 2.668550 GTCGGCCACAACCACCTC 60.669 66.667 2.24 0.00 0.00 3.85
5308 8287 3.948719 TCGGCCACAACCACCTCC 61.949 66.667 2.24 0.00 0.00 4.30
5309 8288 3.953775 CGGCCACAACCACCTCCT 61.954 66.667 2.24 0.00 0.00 3.69
5310 8289 2.520968 GGCCACAACCACCTCCTT 59.479 61.111 0.00 0.00 0.00 3.36
5311 8290 1.903404 GGCCACAACCACCTCCTTG 60.903 63.158 0.00 0.00 0.00 3.61
5312 8291 2.564721 GCCACAACCACCTCCTTGC 61.565 63.158 0.00 0.00 0.00 4.01
5313 8292 1.903404 CCACAACCACCTCCTTGCC 60.903 63.158 0.00 0.00 0.00 4.52
5314 8293 1.151450 CACAACCACCTCCTTGCCT 59.849 57.895 0.00 0.00 0.00 4.75
5315 8294 0.468029 CACAACCACCTCCTTGCCTT 60.468 55.000 0.00 0.00 0.00 4.35
5316 8295 0.261696 ACAACCACCTCCTTGCCTTT 59.738 50.000 0.00 0.00 0.00 3.11
5317 8296 0.675633 CAACCACCTCCTTGCCTTTG 59.324 55.000 0.00 0.00 0.00 2.77
5318 8297 0.555769 AACCACCTCCTTGCCTTTGA 59.444 50.000 0.00 0.00 0.00 2.69
5321 8300 0.600057 CACCTCCTTGCCTTTGAAGC 59.400 55.000 0.00 0.00 0.00 3.86
5422 8401 5.913137 AAATCATTGAAGGTATGCGGAAA 57.087 34.783 0.00 0.00 0.00 3.13
5448 8427 3.610040 TGACCACAGTTACCATAGCTG 57.390 47.619 0.00 0.00 41.98 4.24
5453 8432 3.193263 CACAGTTACCATAGCTGCTGAG 58.807 50.000 13.43 4.25 40.20 3.35
5495 8474 0.688487 CCACCCACCTACCTCGAAAA 59.312 55.000 0.00 0.00 0.00 2.29
5496 8475 1.338769 CCACCCACCTACCTCGAAAAG 60.339 57.143 0.00 0.00 0.00 2.27
5514 8493 5.357032 CGAAAAGCCCTATTTATTCACCACT 59.643 40.000 0.00 0.00 0.00 4.00
5617 8613 3.706594 TCTCTCTCTCTCTCTCTCTCCAC 59.293 52.174 0.00 0.00 0.00 4.02
5619 8615 1.484653 TCTCTCTCTCTCTCTCCACCG 59.515 57.143 0.00 0.00 0.00 4.94
5620 8616 0.107410 TCTCTCTCTCTCTCCACCGC 60.107 60.000 0.00 0.00 0.00 5.68
5621 8617 1.077357 TCTCTCTCTCTCCACCGCC 60.077 63.158 0.00 0.00 0.00 6.13
5622 8618 1.379176 CTCTCTCTCTCCACCGCCA 60.379 63.158 0.00 0.00 0.00 5.69
5623 8619 0.754957 CTCTCTCTCTCCACCGCCAT 60.755 60.000 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.455674 TGATCTGGAAGTGGTTGTCG 57.544 50.000 0.00 0.00 33.76 4.35
3 4 8.562892 CATATATTTGATCTGGAAGTGGTTGTC 58.437 37.037 0.00 0.00 33.76 3.18
4 5 7.503566 CCATATATTTGATCTGGAAGTGGTTGT 59.496 37.037 0.00 0.00 33.76 3.32
5 6 7.040201 CCCATATATTTGATCTGGAAGTGGTTG 60.040 40.741 0.00 0.00 33.76 3.77
24 25 1.136828 GCCACACCCACTCCCATATA 58.863 55.000 0.00 0.00 0.00 0.86
58 59 6.707599 AGAGTAAAACTGCGTAGAACATTC 57.292 37.500 7.78 0.00 0.00 2.67
86 88 2.492088 CGGGTCTCGCCATTCTATCATA 59.508 50.000 0.00 0.00 39.65 2.15
87 89 1.273606 CGGGTCTCGCCATTCTATCAT 59.726 52.381 0.00 0.00 39.65 2.45
105 107 5.012328 ACTTTCCTAGTTTGCTAGATCGG 57.988 43.478 0.00 0.00 45.77 4.18
106 108 5.897050 AGACTTTCCTAGTTTGCTAGATCG 58.103 41.667 0.00 0.00 45.77 3.69
114 116 8.888579 TTTGAGTTCTAGACTTTCCTAGTTTG 57.111 34.615 0.00 0.00 39.19 2.93
131 133 3.445096 CCATGGATGGGTTCTTTGAGTTC 59.555 47.826 5.56 0.00 44.31 3.01
184 186 1.385756 GCTCCTCCTCCGGTACTGAC 61.386 65.000 2.31 0.00 0.00 3.51
225 227 1.937924 GCCATGGAGCCTTACCCCTT 61.938 60.000 18.40 0.00 0.00 3.95
227 229 2.195956 GCCATGGAGCCTTACCCC 59.804 66.667 18.40 0.00 0.00 4.95
245 247 1.674057 CTCTTTGGTGCCTCCTCGT 59.326 57.895 0.00 0.00 37.07 4.18
250 252 0.905357 TCTAGCCTCTTTGGTGCCTC 59.095 55.000 0.00 0.00 38.35 4.70
258 260 1.410882 GTCATCGCCTCTAGCCTCTTT 59.589 52.381 0.00 0.00 38.78 2.52
278 280 4.421479 ACGCCTCAAGAGTCGCCG 62.421 66.667 0.00 0.00 0.00 6.46
312 314 1.066215 GTTCATTCCCACCCAATTGCC 60.066 52.381 0.00 0.00 0.00 4.52
329 331 2.588439 GCGGGGGAGTTAGGGTTC 59.412 66.667 0.00 0.00 0.00 3.62
330 332 3.396570 CGCGGGGGAGTTAGGGTT 61.397 66.667 0.00 0.00 0.00 4.11
342 344 4.726304 TAAAAGGTGGGGCGCGGG 62.726 66.667 8.83 0.00 0.00 6.13
343 345 3.131478 CTAAAAGGTGGGGCGCGG 61.131 66.667 8.83 0.00 0.00 6.46
344 346 3.131478 CCTAAAAGGTGGGGCGCG 61.131 66.667 0.00 0.00 0.00 6.86
345 347 2.754254 CCCTAAAAGGTGGGGCGC 60.754 66.667 0.00 0.00 39.76 6.53
349 351 0.922243 TAGGGCCCCTAAAAGGTGGG 60.922 60.000 21.43 0.00 42.98 4.61
350 352 1.004436 TTAGGGCCCCTAAAAGGTGG 58.996 55.000 20.22 0.00 42.38 4.61
357 359 1.924423 TGCGGTTTAGGGCCCCTAA 60.924 57.895 21.43 18.65 43.47 2.69
358 360 2.285517 TGCGGTTTAGGGCCCCTA 60.286 61.111 21.43 5.04 34.61 3.53
359 361 4.043100 GTGCGGTTTAGGGCCCCT 62.043 66.667 21.43 7.84 37.71 4.79
360 362 4.354162 TGTGCGGTTTAGGGCCCC 62.354 66.667 21.43 1.70 0.00 5.80
361 363 3.060000 GTGTGCGGTTTAGGGCCC 61.060 66.667 16.46 16.46 0.00 5.80
362 364 3.060000 GGTGTGCGGTTTAGGGCC 61.060 66.667 0.00 0.00 0.00 5.80
363 365 3.060000 GGGTGTGCGGTTTAGGGC 61.060 66.667 0.00 0.00 0.00 5.19
364 366 2.360726 GGGGTGTGCGGTTTAGGG 60.361 66.667 0.00 0.00 0.00 3.53
365 367 1.001393 ATGGGGTGTGCGGTTTAGG 60.001 57.895 0.00 0.00 0.00 2.69
366 368 0.608035 ACATGGGGTGTGCGGTTTAG 60.608 55.000 0.00 0.00 40.28 1.85
367 369 1.456726 ACATGGGGTGTGCGGTTTA 59.543 52.632 0.00 0.00 40.28 2.01
368 370 2.197324 ACATGGGGTGTGCGGTTT 59.803 55.556 0.00 0.00 40.28 3.27
390 392 3.310860 CTAGTGTGCACGGGACCCC 62.311 68.421 13.13 0.00 36.20 4.95
391 393 2.227089 CTCTAGTGTGCACGGGACCC 62.227 65.000 13.13 0.00 36.20 4.46
392 394 1.215647 CTCTAGTGTGCACGGGACC 59.784 63.158 13.13 0.00 36.20 4.46
393 395 0.171455 CTCTCTAGTGTGCACGGGAC 59.829 60.000 13.13 4.91 36.20 4.46
394 396 0.251209 ACTCTCTAGTGTGCACGGGA 60.251 55.000 13.13 1.83 33.57 5.14
395 397 0.171455 GACTCTCTAGTGTGCACGGG 59.829 60.000 13.13 0.00 35.56 5.28
396 398 0.171455 GGACTCTCTAGTGTGCACGG 59.829 60.000 13.13 2.53 35.56 4.94
397 399 0.179187 CGGACTCTCTAGTGTGCACG 60.179 60.000 13.13 0.00 35.56 5.34
398 400 0.882474 ACGGACTCTCTAGTGTGCAC 59.118 55.000 10.75 10.75 35.56 4.57
399 401 0.881796 CACGGACTCTCTAGTGTGCA 59.118 55.000 4.88 0.00 35.56 4.57
400 402 0.171455 CCACGGACTCTCTAGTGTGC 59.829 60.000 0.00 0.00 35.56 4.57
401 403 0.811915 CCCACGGACTCTCTAGTGTG 59.188 60.000 0.00 0.00 35.56 3.82
402 404 0.966370 GCCCACGGACTCTCTAGTGT 60.966 60.000 0.00 0.00 35.56 3.55
403 405 0.965866 TGCCCACGGACTCTCTAGTG 60.966 60.000 0.00 0.00 35.56 2.74
404 406 0.966370 GTGCCCACGGACTCTCTAGT 60.966 60.000 0.00 0.00 39.21 2.57
405 407 1.810532 GTGCCCACGGACTCTCTAG 59.189 63.158 0.00 0.00 0.00 2.43
406 408 4.013702 GTGCCCACGGACTCTCTA 57.986 61.111 0.00 0.00 0.00 2.43
429 431 4.320456 AGGCTCGTGCACACAGGG 62.320 66.667 18.64 1.11 41.91 4.45
430 432 3.046087 CAGGCTCGTGCACACAGG 61.046 66.667 18.64 0.00 41.91 4.00
431 433 2.280389 ACAGGCTCGTGCACACAG 60.280 61.111 18.64 12.86 41.91 3.66
432 434 2.588596 CACAGGCTCGTGCACACA 60.589 61.111 18.64 0.94 41.91 3.72
433 435 3.349006 CCACAGGCTCGTGCACAC 61.349 66.667 18.64 5.25 41.91 3.82
434 436 4.624364 CCCACAGGCTCGTGCACA 62.624 66.667 18.64 3.15 41.91 4.57
444 446 3.400599 GATACCCCGTGCCCACAGG 62.401 68.421 0.00 1.55 0.00 4.00
445 447 2.189521 GATACCCCGTGCCCACAG 59.810 66.667 0.00 0.00 0.00 3.66
446 448 3.776781 CGATACCCCGTGCCCACA 61.777 66.667 0.00 0.00 0.00 4.17
447 449 3.441011 CTCGATACCCCGTGCCCAC 62.441 68.421 0.00 0.00 0.00 4.61
448 450 3.151710 CTCGATACCCCGTGCCCA 61.152 66.667 0.00 0.00 0.00 5.36
449 451 3.925090 CCTCGATACCCCGTGCCC 61.925 72.222 0.00 0.00 0.00 5.36
450 452 3.925090 CCCTCGATACCCCGTGCC 61.925 72.222 0.00 0.00 0.00 5.01
451 453 3.925090 CCCCTCGATACCCCGTGC 61.925 72.222 0.00 0.00 0.00 5.34
452 454 1.619807 AAACCCCTCGATACCCCGTG 61.620 60.000 0.00 0.00 0.00 4.94
463 696 5.163612 GCATATTTGTCTCTCAAAACCCCTC 60.164 44.000 0.00 0.00 46.97 4.30
466 699 4.706962 AGGCATATTTGTCTCTCAAAACCC 59.293 41.667 0.00 0.00 46.97 4.11
469 702 6.716628 ACTCAAGGCATATTTGTCTCTCAAAA 59.283 34.615 0.00 0.00 46.97 2.44
473 706 5.293079 GTGACTCAAGGCATATTTGTCTCTC 59.707 44.000 0.00 0.00 36.59 3.20
474 707 5.181748 GTGACTCAAGGCATATTTGTCTCT 58.818 41.667 0.00 0.00 36.59 3.10
475 708 4.033358 CGTGACTCAAGGCATATTTGTCTC 59.967 45.833 0.00 0.00 36.59 3.36
552 1325 6.375377 GCAAAACATGATGCAAAATGAACAT 58.625 32.000 16.47 1.00 42.12 2.71
553 1326 5.558463 CGCAAAACATGATGCAAAATGAACA 60.558 36.000 16.47 0.00 42.68 3.18
556 1329 3.120615 GCGCAAAACATGATGCAAAATGA 60.121 39.130 16.47 0.00 42.68 2.57
587 1360 0.901124 AGCGCCTCTCTCTGTGAATT 59.099 50.000 2.29 0.00 0.00 2.17
593 1366 2.784356 CCCTGAGCGCCTCTCTCTG 61.784 68.421 2.29 0.00 42.38 3.35
608 1382 0.031010 CTGGAGGTAACCCTAGCCCT 60.031 60.000 0.00 0.00 42.86 5.19
642 1418 2.124942 CTCTTCCTCCTTGGCCGC 60.125 66.667 0.00 0.00 35.26 6.53
671 1447 4.112634 GTTGCAAAACTTCCTCCAAAGAC 58.887 43.478 0.00 0.00 0.00 3.01
678 1454 2.858646 GCCTTCGTTGCAAAACTTCCTC 60.859 50.000 0.00 0.00 0.00 3.71
681 1457 2.492019 AGCCTTCGTTGCAAAACTTC 57.508 45.000 0.00 0.00 0.00 3.01
689 1465 3.619233 TTTAGTGAAAGCCTTCGTTGC 57.381 42.857 0.00 0.00 33.94 4.17
714 1490 1.564348 CCTTGGGGCATGTACTACCTT 59.436 52.381 0.00 0.00 0.00 3.50
718 1567 2.263895 AGTCCTTGGGGCATGTACTA 57.736 50.000 0.00 0.00 0.00 1.82
881 1731 1.054406 GGACTATGGTGGCCTGGCTA 61.054 60.000 19.68 10.28 0.00 3.93
888 1738 3.460648 GTCTGTGGACTATGGTGGC 57.539 57.895 0.00 0.00 39.24 5.01
1417 2373 5.118050 CAGAAACAACAAGTATCTAACGCGA 59.882 40.000 15.93 0.00 0.00 5.87
1532 2488 2.721603 CGTCGATCGATCAACTCATTCC 59.278 50.000 22.50 2.42 42.86 3.01
1642 2598 0.328258 ACCGTGGAATCCAGGAAAGG 59.672 55.000 22.19 13.34 41.36 3.11
1688 2644 0.879090 GGTTACACAGAAAAGGCGGG 59.121 55.000 0.00 0.00 0.00 6.13
1746 3201 5.039920 AGCACATGAATCATGCCTACTAA 57.960 39.130 21.92 0.00 44.80 2.24
1747 3202 4.635223 GAGCACATGAATCATGCCTACTA 58.365 43.478 21.92 0.00 44.80 1.82
1748 3203 3.474600 GAGCACATGAATCATGCCTACT 58.525 45.455 21.92 13.87 44.80 2.57
1767 3223 0.321122 GGGGCTCATCATAAGGCGAG 60.321 60.000 0.00 0.00 40.05 5.03
1769 3225 0.976641 TAGGGGCTCATCATAAGGCG 59.023 55.000 0.00 0.00 40.05 5.52
1788 3244 6.597280 GCTCTGATTTGTTATCTCCAACTTCT 59.403 38.462 0.00 0.00 0.00 2.85
1812 3268 0.609131 TTGCCTAAAGGACCAGCTGC 60.609 55.000 8.66 0.00 37.39 5.25
1852 3308 2.552373 GGTCCCTGAAAAGTACCAGGTG 60.552 54.545 0.76 6.60 46.47 4.00
1865 3321 2.342406 TCTCAATTCCTGGTCCCTGA 57.658 50.000 0.00 0.00 0.00 3.86
1999 3455 0.958091 TTGAATTTCCTGGTGGCACG 59.042 50.000 12.17 0.00 0.00 5.34
2018 3474 3.791973 TGTTTTTGCAACAGACCGAAT 57.208 38.095 0.00 0.00 0.00 3.34
2051 3507 6.855836 TCCAGTTGCATTTTATGAAGCTAAG 58.144 36.000 0.00 0.00 27.11 2.18
2073 3529 6.449635 TTGACACATATGCTATGGTTTTCC 57.550 37.500 1.58 0.00 41.14 3.13
2074 3530 6.473455 GCTTTGACACATATGCTATGGTTTTC 59.527 38.462 1.58 0.00 0.00 2.29
2075 3531 6.071447 TGCTTTGACACATATGCTATGGTTTT 60.071 34.615 1.58 0.00 0.00 2.43
2076 3532 5.418524 TGCTTTGACACATATGCTATGGTTT 59.581 36.000 1.58 0.00 0.00 3.27
2077 3533 4.949238 TGCTTTGACACATATGCTATGGTT 59.051 37.500 1.58 0.00 0.00 3.67
2078 3534 4.525996 TGCTTTGACACATATGCTATGGT 58.474 39.130 1.58 0.00 0.00 3.55
2079 3535 4.577693 ACTGCTTTGACACATATGCTATGG 59.422 41.667 1.58 0.00 0.00 2.74
2080 3536 5.746307 ACTGCTTTGACACATATGCTATG 57.254 39.130 1.58 0.00 0.00 2.23
2081 3537 7.050377 AGTAACTGCTTTGACACATATGCTAT 58.950 34.615 1.58 0.00 0.00 2.97
2082 3538 6.406370 AGTAACTGCTTTGACACATATGCTA 58.594 36.000 1.58 0.00 0.00 3.49
2083 3539 5.248640 AGTAACTGCTTTGACACATATGCT 58.751 37.500 1.58 0.00 0.00 3.79
2084 3540 5.551760 AGTAACTGCTTTGACACATATGC 57.448 39.130 1.58 0.00 0.00 3.14
2085 3541 8.256611 AGTTAGTAACTGCTTTGACACATATG 57.743 34.615 14.82 0.00 41.01 1.78
2086 3542 8.094548 TGAGTTAGTAACTGCTTTGACACATAT 58.905 33.333 20.21 0.00 43.03 1.78
2087 3543 7.438564 TGAGTTAGTAACTGCTTTGACACATA 58.561 34.615 20.21 0.00 43.03 2.29
2088 3544 6.288294 TGAGTTAGTAACTGCTTTGACACAT 58.712 36.000 20.21 0.00 43.03 3.21
2089 3545 5.666462 TGAGTTAGTAACTGCTTTGACACA 58.334 37.500 20.21 5.82 43.03 3.72
2090 3546 6.787085 ATGAGTTAGTAACTGCTTTGACAC 57.213 37.500 20.21 3.29 43.03 3.67
2161 3617 8.729805 ATTCACTGGTTTCAGCAAAAATAAAA 57.270 26.923 0.00 0.00 44.59 1.52
2378 3982 4.034975 GTGCATTGAGAAGAGTATTGGCTC 59.965 45.833 0.00 0.00 35.82 4.70
2522 4126 8.630037 AGTTGCAATAGTAAGTTTAGTTTTGCT 58.370 29.630 23.11 10.35 44.32 3.91
2812 4426 3.988379 TGACCTTGCAGTCATTGTTTC 57.012 42.857 4.76 0.00 41.78 2.78
2973 4589 1.217882 GGAACATAAGTCCATCGCCG 58.782 55.000 0.00 0.00 0.00 6.46
3018 4634 8.480643 AGCAATAGTCAACTACTTGTCATTAC 57.519 34.615 0.00 0.00 39.80 1.89
3025 4641 6.102663 ACAGCTAGCAATAGTCAACTACTTG 58.897 40.000 18.83 2.66 39.80 3.16
3053 4669 7.604164 CGGGAATTATATGACAACTAAGAGCAT 59.396 37.037 0.00 0.00 0.00 3.79
3093 4709 9.241317 GTCTGTCATGCCTTGAATTAAATTATG 57.759 33.333 0.00 0.00 35.70 1.90
3094 4710 8.970020 TGTCTGTCATGCCTTGAATTAAATTAT 58.030 29.630 0.00 0.00 35.70 1.28
3095 4711 8.347004 TGTCTGTCATGCCTTGAATTAAATTA 57.653 30.769 0.00 0.00 35.70 1.40
3097 4713 6.839124 TGTCTGTCATGCCTTGAATTAAAT 57.161 33.333 0.00 0.00 35.70 1.40
3098 4714 6.839124 ATGTCTGTCATGCCTTGAATTAAA 57.161 33.333 0.00 0.00 35.70 1.52
3101 4717 6.604396 TGATAATGTCTGTCATGCCTTGAATT 59.396 34.615 0.00 0.00 35.70 2.17
3149 4765 9.893305 GTCCCTTAATAACAATTCATTTATCCG 57.107 33.333 0.00 0.00 0.00 4.18
3153 4769 9.722317 ATGGGTCCCTTAATAACAATTCATTTA 57.278 29.630 10.00 0.00 0.00 1.40
3155 4771 7.843760 TCATGGGTCCCTTAATAACAATTCATT 59.156 33.333 10.00 0.00 0.00 2.57
3156 4772 7.287696 GTCATGGGTCCCTTAATAACAATTCAT 59.712 37.037 10.00 0.00 0.00 2.57
3157 4773 6.605594 GTCATGGGTCCCTTAATAACAATTCA 59.394 38.462 10.00 0.00 0.00 2.57
3158 4774 6.605594 TGTCATGGGTCCCTTAATAACAATTC 59.394 38.462 10.00 0.00 0.00 2.17
3159 4775 6.498538 TGTCATGGGTCCCTTAATAACAATT 58.501 36.000 10.00 0.00 0.00 2.32
3163 4779 5.751586 TCTTGTCATGGGTCCCTTAATAAC 58.248 41.667 10.00 0.00 0.00 1.89
3164 4780 6.184789 GTTCTTGTCATGGGTCCCTTAATAA 58.815 40.000 10.00 0.00 0.00 1.40
3165 4781 5.251932 TGTTCTTGTCATGGGTCCCTTAATA 59.748 40.000 10.00 0.00 0.00 0.98
3166 4782 4.044065 TGTTCTTGTCATGGGTCCCTTAAT 59.956 41.667 10.00 0.00 0.00 1.40
3168 4784 2.983192 TGTTCTTGTCATGGGTCCCTTA 59.017 45.455 10.00 0.00 0.00 2.69
3171 4787 2.514458 ATGTTCTTGTCATGGGTCCC 57.486 50.000 0.00 0.00 0.00 4.46
3173 4789 5.123979 GGTTCTAATGTTCTTGTCATGGGTC 59.876 44.000 0.00 0.00 0.00 4.46
3175 4791 5.256474 AGGTTCTAATGTTCTTGTCATGGG 58.744 41.667 0.00 0.00 0.00 4.00
3176 4792 6.824305 AAGGTTCTAATGTTCTTGTCATGG 57.176 37.500 0.00 0.00 0.00 3.66
3177 4793 7.651808 ACAAAGGTTCTAATGTTCTTGTCATG 58.348 34.615 0.00 0.00 0.00 3.07
3178 4794 7.823745 ACAAAGGTTCTAATGTTCTTGTCAT 57.176 32.000 0.00 0.00 0.00 3.06
3179 4795 8.918202 ATACAAAGGTTCTAATGTTCTTGTCA 57.082 30.769 0.00 0.00 0.00 3.58
3233 4874 8.825667 TTACCAAAATCAATTTTTCCACTAGC 57.174 30.769 0.00 0.00 37.86 3.42
3240 4881 8.766000 ACCCGTATTACCAAAATCAATTTTTC 57.234 30.769 0.00 0.00 37.86 2.29
3245 4886 7.123547 ACATCAACCCGTATTACCAAAATCAAT 59.876 33.333 0.00 0.00 0.00 2.57
3249 4897 5.393678 GCACATCAACCCGTATTACCAAAAT 60.394 40.000 0.00 0.00 0.00 1.82
3253 4901 2.237643 AGCACATCAACCCGTATTACCA 59.762 45.455 0.00 0.00 0.00 3.25
3256 4904 2.769663 AGGAGCACATCAACCCGTATTA 59.230 45.455 0.00 0.00 0.00 0.98
3257 4905 1.559682 AGGAGCACATCAACCCGTATT 59.440 47.619 0.00 0.00 0.00 1.89
3258 4906 1.204146 AGGAGCACATCAACCCGTAT 58.796 50.000 0.00 0.00 0.00 3.06
3259 4907 1.855295 TAGGAGCACATCAACCCGTA 58.145 50.000 0.00 0.00 0.00 4.02
3260 4908 1.204146 ATAGGAGCACATCAACCCGT 58.796 50.000 0.00 0.00 0.00 5.28
3261 4909 2.332063 AATAGGAGCACATCAACCCG 57.668 50.000 0.00 0.00 0.00 5.28
3262 4910 3.131046 CCAAAATAGGAGCACATCAACCC 59.869 47.826 0.00 0.00 0.00 4.11
3263 4911 3.763897 ACCAAAATAGGAGCACATCAACC 59.236 43.478 0.00 0.00 0.00 3.77
3264 4912 4.218417 ACACCAAAATAGGAGCACATCAAC 59.782 41.667 0.00 0.00 0.00 3.18
3296 4959 8.461222 CACAATGACATACATTATCAAACCTGT 58.539 33.333 0.00 0.00 46.01 4.00
3297 4960 7.916977 CCACAATGACATACATTATCAAACCTG 59.083 37.037 0.00 0.00 46.01 4.00
3299 4962 7.995289 TCCACAATGACATACATTATCAAACC 58.005 34.615 0.00 0.00 46.01 3.27
3417 5689 1.737793 GCCCCAATAAACTGTCAGTCG 59.262 52.381 5.82 0.00 0.00 4.18
3418 5690 3.073274 AGCCCCAATAAACTGTCAGTC 57.927 47.619 5.82 0.00 0.00 3.51
3688 5960 3.490348 CAATGAGACCTTCCCAAACTGT 58.510 45.455 0.00 0.00 0.00 3.55
3868 6163 1.077357 AAGTGTGCCCGTTTCACCA 60.077 52.632 0.00 0.00 33.71 4.17
3972 6269 3.494251 GGCGAAACAAAGAAATGCAACAT 59.506 39.130 0.00 0.00 0.00 2.71
4193 6654 7.255104 CCAAAGCTATAAACATCGCATTTCCTA 60.255 37.037 0.00 0.00 0.00 2.94
4223 6684 5.798132 CAGCAGTATATCTCCCATAAGCAA 58.202 41.667 0.00 0.00 0.00 3.91
4647 7147 8.311395 ACACTAAGATTCTAGATCACCAATCA 57.689 34.615 0.00 0.00 36.79 2.57
4676 7176 6.258287 CGTGATTAGTAGAGTGCAGTAGTAGT 59.742 42.308 0.00 0.00 0.00 2.73
4679 7179 4.942483 ACGTGATTAGTAGAGTGCAGTAGT 59.058 41.667 0.00 0.00 0.00 2.73
4682 7182 3.756963 TGACGTGATTAGTAGAGTGCAGT 59.243 43.478 0.00 0.00 0.00 4.40
4683 7183 4.142578 ACTGACGTGATTAGTAGAGTGCAG 60.143 45.833 0.00 0.00 0.00 4.41
4684 7184 3.756963 ACTGACGTGATTAGTAGAGTGCA 59.243 43.478 0.00 0.00 0.00 4.57
4685 7185 4.142665 TGACTGACGTGATTAGTAGAGTGC 60.143 45.833 0.00 0.00 0.00 4.40
4686 7186 5.547181 TGACTGACGTGATTAGTAGAGTG 57.453 43.478 0.00 0.00 0.00 3.51
4687 7187 5.066634 CCATGACTGACGTGATTAGTAGAGT 59.933 44.000 0.00 0.00 37.69 3.24
4688 7188 5.515184 CCATGACTGACGTGATTAGTAGAG 58.485 45.833 0.00 0.00 37.69 2.43
4689 7189 4.202020 GCCATGACTGACGTGATTAGTAGA 60.202 45.833 0.00 0.00 37.69 2.59
4690 7190 4.045104 GCCATGACTGACGTGATTAGTAG 58.955 47.826 0.00 0.00 37.69 2.57
4691 7191 3.699538 AGCCATGACTGACGTGATTAGTA 59.300 43.478 0.00 0.00 37.69 1.82
4704 7204 6.265422 GGGCATTTACTAAATTAGCCATGACT 59.735 38.462 18.13 0.00 40.10 3.41
4707 7207 5.460646 CGGGCATTTACTAAATTAGCCATG 58.539 41.667 18.13 10.28 40.10 3.66
4717 7217 4.127171 GAGATGAAGCGGGCATTTACTAA 58.873 43.478 0.00 0.00 0.00 2.24
4755 7255 0.179163 GCAATAGGGTTCGCACAAGC 60.179 55.000 0.00 0.00 37.42 4.01
4771 7271 1.862049 TTCTAGGGCATGCCAGGCAA 61.862 55.000 36.56 20.60 43.62 4.52
4789 7289 4.894784 TCAACTAAACTCCGAGCTTGATT 58.105 39.130 1.22 0.00 0.00 2.57
4825 7327 0.179018 GCAAGACCACCTGTGACCTT 60.179 55.000 0.00 0.00 0.00 3.50
4845 7347 3.470567 GCTTCAGACCACGCGACG 61.471 66.667 15.93 3.98 0.00 5.12
4849 7351 3.112709 GTCCGCTTCAGACCACGC 61.113 66.667 0.00 0.00 0.00 5.34
4947 7449 3.195661 GAGGTATGCTCGGTTGGTAAAG 58.804 50.000 0.00 0.00 0.00 1.85
4992 7494 3.244345 ACACAGACGTTTACATGAACACG 59.756 43.478 0.00 6.74 38.62 4.49
5027 7529 0.672401 ATCGGTGCAGGTTACCAACG 60.672 55.000 3.51 0.00 43.10 4.10
5028 7530 1.530323 AATCGGTGCAGGTTACCAAC 58.470 50.000 3.51 0.00 38.11 3.77
5060 7562 5.822519 GGAAGGATGCAGACAAACACATATA 59.177 40.000 0.00 0.00 0.00 0.86
5097 7599 7.149973 CACTTGAGTTCACCAATCATTTCATT 58.850 34.615 0.00 0.00 0.00 2.57
5103 8082 2.821969 GCCACTTGAGTTCACCAATCAT 59.178 45.455 0.00 0.00 0.00 2.45
5168 8147 2.677968 AATGCCAGCCCAACCCACTT 62.678 55.000 0.00 0.00 0.00 3.16
5185 8164 7.106239 AGAACTACGACCATTTTCATGAGAAT 58.894 34.615 5.67 5.67 32.89 2.40
5187 8166 6.037786 AGAACTACGACCATTTTCATGAGA 57.962 37.500 0.00 0.00 31.07 3.27
5194 8173 3.992427 GTCCGAAGAACTACGACCATTTT 59.008 43.478 0.00 0.00 0.00 1.82
5260 8239 2.351276 GAGGTGGTTGTGGCCGAT 59.649 61.111 0.00 0.00 0.00 4.18
5287 8266 2.551912 GGTGGTTGTGGCCGACAAG 61.552 63.158 17.58 0.00 45.46 3.16
5288 8267 2.517402 GGTGGTTGTGGCCGACAA 60.517 61.111 14.38 14.38 42.55 3.18
5289 8268 3.469863 GAGGTGGTTGTGGCCGACA 62.470 63.158 0.00 0.35 0.00 4.35
5290 8269 2.668550 GAGGTGGTTGTGGCCGAC 60.669 66.667 0.00 0.00 0.00 4.79
5291 8270 3.948719 GGAGGTGGTTGTGGCCGA 61.949 66.667 0.00 0.00 0.00 5.54
5292 8271 3.491598 AAGGAGGTGGTTGTGGCCG 62.492 63.158 0.00 0.00 0.00 6.13
5293 8272 1.903404 CAAGGAGGTGGTTGTGGCC 60.903 63.158 0.00 0.00 0.00 5.36
5294 8273 2.564721 GCAAGGAGGTGGTTGTGGC 61.565 63.158 0.00 0.00 0.00 5.01
5295 8274 1.903404 GGCAAGGAGGTGGTTGTGG 60.903 63.158 0.00 0.00 0.00 4.17
5296 8275 0.468029 AAGGCAAGGAGGTGGTTGTG 60.468 55.000 0.00 0.00 0.00 3.33
5297 8276 0.261696 AAAGGCAAGGAGGTGGTTGT 59.738 50.000 0.00 0.00 0.00 3.32
5298 8277 0.675633 CAAAGGCAAGGAGGTGGTTG 59.324 55.000 0.00 0.00 0.00 3.77
5299 8278 0.555769 TCAAAGGCAAGGAGGTGGTT 59.444 50.000 0.00 0.00 0.00 3.67
5300 8279 0.555769 TTCAAAGGCAAGGAGGTGGT 59.444 50.000 0.00 0.00 0.00 4.16
5301 8280 1.251251 CTTCAAAGGCAAGGAGGTGG 58.749 55.000 0.00 0.00 0.00 4.61
5302 8281 0.600057 GCTTCAAAGGCAAGGAGGTG 59.400 55.000 0.00 0.00 0.00 4.00
5303 8282 0.480252 AGCTTCAAAGGCAAGGAGGT 59.520 50.000 0.00 0.00 0.00 3.85
5304 8283 1.172175 GAGCTTCAAAGGCAAGGAGG 58.828 55.000 0.00 0.00 0.00 4.30
5305 8284 1.172175 GGAGCTTCAAAGGCAAGGAG 58.828 55.000 0.00 0.00 0.00 3.69
5306 8285 0.251341 GGGAGCTTCAAAGGCAAGGA 60.251 55.000 0.00 0.00 0.00 3.36
5307 8286 1.253593 GGGGAGCTTCAAAGGCAAGG 61.254 60.000 0.00 0.00 0.00 3.61
5308 8287 0.540365 TGGGGAGCTTCAAAGGCAAG 60.540 55.000 0.00 0.00 0.00 4.01
5309 8288 0.540365 CTGGGGAGCTTCAAAGGCAA 60.540 55.000 0.00 0.00 0.00 4.52
5310 8289 1.075482 CTGGGGAGCTTCAAAGGCA 59.925 57.895 0.00 0.00 0.00 4.75
5311 8290 0.251341 TTCTGGGGAGCTTCAAAGGC 60.251 55.000 0.00 0.00 0.00 4.35
5312 8291 2.521547 ATTCTGGGGAGCTTCAAAGG 57.478 50.000 0.00 0.00 0.00 3.11
5313 8292 2.948315 GCTATTCTGGGGAGCTTCAAAG 59.052 50.000 0.00 0.00 33.28 2.77
5314 8293 2.357154 GGCTATTCTGGGGAGCTTCAAA 60.357 50.000 0.00 0.00 36.43 2.69
5315 8294 1.212935 GGCTATTCTGGGGAGCTTCAA 59.787 52.381 0.00 0.00 36.43 2.69
5316 8295 0.839946 GGCTATTCTGGGGAGCTTCA 59.160 55.000 0.00 0.00 36.43 3.02
5317 8296 1.135960 AGGCTATTCTGGGGAGCTTC 58.864 55.000 0.00 0.00 36.43 3.86
5318 8297 0.842635 CAGGCTATTCTGGGGAGCTT 59.157 55.000 0.00 0.00 36.43 3.74
5429 8408 2.093447 AGCAGCTATGGTAACTGTGGTC 60.093 50.000 0.00 0.00 34.74 4.02
5448 8427 4.430137 TGAATGTTGATCTTTGCTCAGC 57.570 40.909 0.00 0.00 0.00 4.26
5453 8432 5.751990 GGGATGAATGAATGTTGATCTTTGC 59.248 40.000 0.00 0.00 0.00 3.68
5495 8474 3.053693 TGCAGTGGTGAATAAATAGGGCT 60.054 43.478 0.00 0.00 0.00 5.19
5496 8475 3.066760 GTGCAGTGGTGAATAAATAGGGC 59.933 47.826 0.00 0.00 0.00 5.19
5514 8493 1.267121 GGAAGAGGTAGTGGAGTGCA 58.733 55.000 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.