Multiple sequence alignment - TraesCS3B01G259600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G259600 chr3B 100.000 3063 0 0 632 3694 417378818 417375756 0.000000e+00 5657.0
1 TraesCS3B01G259600 chr3B 100.000 273 0 0 1 273 417379449 417379177 4.260000e-139 505.0
2 TraesCS3B01G259600 chr3B 78.386 347 71 4 3163 3507 267756 267412 4.800000e-54 222.0
3 TraesCS3B01G259600 chr3B 86.705 173 19 2 1147 1319 8698943 8699111 4.870000e-44 189.0
4 TraesCS3B01G259600 chr3A 94.511 2988 122 19 727 3694 430530092 430527127 0.000000e+00 4571.0
5 TraesCS3B01G259600 chr3D 94.660 1498 53 11 706 2193 304024771 304026251 0.000000e+00 2298.0
6 TraesCS3B01G259600 chr3D 94.375 1511 41 20 2203 3694 304027638 304029123 0.000000e+00 2279.0
7 TraesCS3B01G259600 chr7B 92.105 228 17 1 1147 1374 468956499 468956725 1.660000e-83 320.0
8 TraesCS3B01G259600 chr7B 95.161 62 2 1 2949 3010 457244644 457244584 3.040000e-16 97.1
9 TraesCS3B01G259600 chr4B 90.351 228 20 2 1147 1374 291661599 291661374 7.760000e-77 298.0
10 TraesCS3B01G259600 chr1B 88.210 229 26 1 1147 1374 544814410 544814182 4.700000e-69 272.0
11 TraesCS3B01G259600 chr1B 95.238 63 2 1 2949 3011 67023405 67023344 8.440000e-17 99.0
12 TraesCS3B01G259600 chr2D 87.719 228 19 5 1147 1374 26025708 26025490 1.320000e-64 257.0
13 TraesCS3B01G259600 chr6B 86.705 173 19 2 1147 1319 691831886 691832054 4.870000e-44 189.0
14 TraesCS3B01G259600 chr6B 100.000 32 0 0 633 664 149732495 149732464 3.980000e-05 60.2
15 TraesCS3B01G259600 chr2A 86.127 173 20 2 1147 1319 635580782 635580614 2.270000e-42 183.0
16 TraesCS3B01G259600 chr6D 93.846 65 2 2 2949 3013 139369276 139369338 3.040000e-16 97.1
17 TraesCS3B01G259600 chr6D 88.462 78 1 3 2931 3008 87332565 87332496 1.830000e-13 87.9
18 TraesCS3B01G259600 chr6D 100.000 28 0 0 633 660 41541263 41541290 7.000000e-03 52.8
19 TraesCS3B01G259600 chr5B 89.744 78 2 2 2931 3008 324964728 324964799 1.090000e-15 95.3
20 TraesCS3B01G259600 chr5B 87.059 85 2 3 2931 3006 542235548 542235632 1.830000e-13 87.9
21 TraesCS3B01G259600 chr4D 86.747 83 6 2 2932 3010 484149290 484149209 1.830000e-13 87.9
22 TraesCS3B01G259600 chr5A 87.342 79 4 5 2932 3009 698351790 698351717 6.570000e-13 86.1
23 TraesCS3B01G259600 chr2B 100.000 32 0 0 633 664 402699678 402699647 3.980000e-05 60.2
24 TraesCS3B01G259600 chr6A 96.875 32 1 0 633 664 52035449 52035480 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G259600 chr3B 417375756 417379449 3693 True 3081.0 5657 100.0000 1 3694 2 chr3B.!!$R2 3693
1 TraesCS3B01G259600 chr3A 430527127 430530092 2965 True 4571.0 4571 94.5110 727 3694 1 chr3A.!!$R1 2967
2 TraesCS3B01G259600 chr3D 304024771 304029123 4352 False 2288.5 2298 94.5175 706 3694 2 chr3D.!!$F1 2988

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 220 0.032678 CGAGATCGTGATTGGGGAGG 59.967 60.0 0.00 0.0 34.11 4.30 F
227 228 0.037590 TGATTGGGGAGGAAACACCG 59.962 55.0 0.00 0.0 42.82 4.94 F
671 672 0.179140 CCAAACACGCTGCAGTTGTT 60.179 50.0 22.80 22.8 0.00 2.83 F
678 679 0.179181 CGCTGCAGTTGTTGGCATAG 60.179 55.0 16.64 0.0 39.65 2.23 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1844 1855 0.254747 CCGAAGTAAATGCAGGGGGA 59.745 55.000 0.00 0.0 0.00 4.81 R
2073 2093 1.071699 AGAGTAATTGGCACGGTGTGT 59.928 47.619 10.24 0.0 35.75 3.72 R
2333 3730 0.462581 GATCTCACCCAGCGATTGCA 60.463 55.000 7.90 0.0 46.23 4.08 R
2697 4094 4.502777 GGGAAAGGGATGAACCGTATCTAC 60.503 50.000 0.00 0.0 40.11 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.941325 CGGTGAGGCCTTGTTAGATC 58.059 55.000 6.77 0.00 34.25 2.75
20 21 1.802880 CGGTGAGGCCTTGTTAGATCG 60.803 57.143 6.77 0.00 34.25 3.69
21 22 1.473434 GGTGAGGCCTTGTTAGATCGG 60.473 57.143 6.77 0.00 0.00 4.18
22 23 0.830648 TGAGGCCTTGTTAGATCGGG 59.169 55.000 6.77 0.00 0.00 5.14
23 24 0.831307 GAGGCCTTGTTAGATCGGGT 59.169 55.000 6.77 0.00 0.00 5.28
24 25 0.831307 AGGCCTTGTTAGATCGGGTC 59.169 55.000 0.00 0.00 0.00 4.46
25 26 0.539986 GGCCTTGTTAGATCGGGTCA 59.460 55.000 0.00 0.00 0.00 4.02
26 27 1.141053 GGCCTTGTTAGATCGGGTCAT 59.859 52.381 0.00 0.00 0.00 3.06
27 28 2.213499 GCCTTGTTAGATCGGGTCATG 58.787 52.381 0.00 0.00 0.00 3.07
28 29 2.420129 GCCTTGTTAGATCGGGTCATGT 60.420 50.000 0.00 0.00 0.00 3.21
29 30 3.181469 GCCTTGTTAGATCGGGTCATGTA 60.181 47.826 0.00 0.00 0.00 2.29
30 31 4.369182 CCTTGTTAGATCGGGTCATGTAC 58.631 47.826 0.00 0.00 0.00 2.90
31 32 4.099573 CCTTGTTAGATCGGGTCATGTACT 59.900 45.833 0.00 0.00 0.00 2.73
32 33 4.649088 TGTTAGATCGGGTCATGTACTG 57.351 45.455 0.00 0.00 0.00 2.74
33 34 4.274978 TGTTAGATCGGGTCATGTACTGA 58.725 43.478 0.00 0.00 0.00 3.41
34 35 4.707934 TGTTAGATCGGGTCATGTACTGAA 59.292 41.667 5.31 0.00 35.07 3.02
35 36 5.186215 TGTTAGATCGGGTCATGTACTGAAA 59.814 40.000 5.31 0.00 35.07 2.69
36 37 6.127168 TGTTAGATCGGGTCATGTACTGAAAT 60.127 38.462 5.31 1.40 35.07 2.17
37 38 4.950050 AGATCGGGTCATGTACTGAAATC 58.050 43.478 5.31 1.21 35.07 2.17
38 39 4.651503 AGATCGGGTCATGTACTGAAATCT 59.348 41.667 5.31 3.06 35.07 2.40
39 40 4.819105 TCGGGTCATGTACTGAAATCTT 57.181 40.909 0.00 0.00 35.07 2.40
40 41 4.503910 TCGGGTCATGTACTGAAATCTTG 58.496 43.478 0.00 0.00 35.07 3.02
41 42 4.020573 TCGGGTCATGTACTGAAATCTTGT 60.021 41.667 0.00 0.00 35.07 3.16
42 43 4.695455 CGGGTCATGTACTGAAATCTTGTT 59.305 41.667 0.00 0.00 35.07 2.83
43 44 5.872617 CGGGTCATGTACTGAAATCTTGTTA 59.127 40.000 0.00 0.00 35.07 2.41
44 45 6.036083 CGGGTCATGTACTGAAATCTTGTTAG 59.964 42.308 0.00 0.00 35.07 2.34
45 46 7.103641 GGGTCATGTACTGAAATCTTGTTAGA 58.896 38.462 0.00 0.00 35.07 2.10
46 47 7.770897 GGGTCATGTACTGAAATCTTGTTAGAT 59.229 37.037 0.00 0.00 43.01 1.98
47 48 8.821894 GGTCATGTACTGAAATCTTGTTAGATC 58.178 37.037 0.00 0.00 40.26 2.75
48 49 8.821894 GTCATGTACTGAAATCTTGTTAGATCC 58.178 37.037 0.00 0.00 40.26 3.36
49 50 8.539544 TCATGTACTGAAATCTTGTTAGATCCA 58.460 33.333 0.00 0.00 40.26 3.41
50 51 9.334947 CATGTACTGAAATCTTGTTAGATCCAT 57.665 33.333 0.00 0.00 40.26 3.41
51 52 9.911788 ATGTACTGAAATCTTGTTAGATCCATT 57.088 29.630 0.00 0.00 40.26 3.16
52 53 9.166173 TGTACTGAAATCTTGTTAGATCCATTG 57.834 33.333 0.00 0.00 40.26 2.82
53 54 7.636150 ACTGAAATCTTGTTAGATCCATTGG 57.364 36.000 0.00 0.00 40.26 3.16
54 55 7.405292 ACTGAAATCTTGTTAGATCCATTGGA 58.595 34.615 8.08 8.08 40.26 3.53
55 56 7.890127 ACTGAAATCTTGTTAGATCCATTGGAA 59.110 33.333 9.98 0.00 40.26 3.53
56 57 8.055279 TGAAATCTTGTTAGATCCATTGGAAC 57.945 34.615 9.98 7.21 40.26 3.62
57 58 7.669304 TGAAATCTTGTTAGATCCATTGGAACA 59.331 33.333 9.98 6.66 40.26 3.18
58 59 8.421249 AAATCTTGTTAGATCCATTGGAACAA 57.579 30.769 9.98 13.88 41.65 2.83
59 60 8.599624 AATCTTGTTAGATCCATTGGAACAAT 57.400 30.769 17.02 5.20 41.65 2.71
60 61 8.004087 ATCTTGTTAGATCCATTGGAACAATG 57.996 34.615 17.02 13.53 39.44 2.82
61 62 7.835682 ATCTTGTTAGATCCATTGGAACAATGA 59.164 33.333 20.21 15.88 39.44 2.57
69 70 3.430473 TGGAACAATGACGCCCTTT 57.570 47.368 0.00 0.00 31.92 3.11
70 71 0.958091 TGGAACAATGACGCCCTTTG 59.042 50.000 0.00 0.00 36.37 2.77
71 72 0.243636 GGAACAATGACGCCCTTTGG 59.756 55.000 0.00 0.00 35.07 3.28
72 73 1.243902 GAACAATGACGCCCTTTGGA 58.756 50.000 0.00 0.00 35.07 3.53
73 74 1.611491 GAACAATGACGCCCTTTGGAA 59.389 47.619 0.00 0.00 35.07 3.53
74 75 0.958822 ACAATGACGCCCTTTGGAAC 59.041 50.000 0.00 0.00 35.07 3.62
75 76 0.243636 CAATGACGCCCTTTGGAACC 59.756 55.000 0.00 0.00 0.00 3.62
76 77 0.178975 AATGACGCCCTTTGGAACCA 60.179 50.000 0.00 0.00 0.00 3.67
77 78 0.609131 ATGACGCCCTTTGGAACCAG 60.609 55.000 0.00 0.00 0.00 4.00
78 79 1.228154 GACGCCCTTTGGAACCAGT 60.228 57.895 0.00 0.00 0.00 4.00
79 80 1.515521 GACGCCCTTTGGAACCAGTG 61.516 60.000 0.00 0.00 0.00 3.66
80 81 2.268076 CGCCCTTTGGAACCAGTGG 61.268 63.158 7.91 7.91 0.00 4.00
81 82 1.152546 GCCCTTTGGAACCAGTGGT 60.153 57.895 9.70 9.70 37.65 4.16
83 84 1.039856 CCCTTTGGAACCAGTGGTTG 58.960 55.000 32.08 16.45 46.95 3.77
84 85 1.410932 CCCTTTGGAACCAGTGGTTGA 60.411 52.381 32.08 15.25 46.95 3.18
85 86 1.956477 CCTTTGGAACCAGTGGTTGAG 59.044 52.381 32.08 20.80 46.95 3.02
86 87 2.654863 CTTTGGAACCAGTGGTTGAGT 58.345 47.619 32.08 8.30 46.95 3.41
87 88 2.341846 TTGGAACCAGTGGTTGAGTC 57.658 50.000 32.08 17.20 46.95 3.36
88 89 0.105964 TGGAACCAGTGGTTGAGTCG 59.894 55.000 32.08 0.00 46.95 4.18
89 90 0.391597 GGAACCAGTGGTTGAGTCGA 59.608 55.000 32.08 0.00 46.95 4.20
90 91 1.499049 GAACCAGTGGTTGAGTCGAC 58.501 55.000 32.08 11.88 46.95 4.20
91 92 0.828022 AACCAGTGGTTGAGTCGACA 59.172 50.000 26.87 0.00 45.07 4.35
92 93 0.104304 ACCAGTGGTTGAGTCGACAC 59.896 55.000 19.50 12.69 27.29 3.67
93 94 0.600255 CCAGTGGTTGAGTCGACACC 60.600 60.000 19.50 16.89 34.50 4.16
94 95 0.600255 CAGTGGTTGAGTCGACACCC 60.600 60.000 19.50 11.64 34.50 4.61
95 96 1.046472 AGTGGTTGAGTCGACACCCA 61.046 55.000 19.50 14.10 34.50 4.51
96 97 0.878961 GTGGTTGAGTCGACACCCAC 60.879 60.000 19.50 20.96 43.67 4.61
97 98 1.663702 GGTTGAGTCGACACCCACG 60.664 63.158 19.50 0.00 0.00 4.94
98 99 2.028484 TTGAGTCGACACCCACGC 59.972 61.111 19.50 0.00 0.00 5.34
99 100 3.509137 TTGAGTCGACACCCACGCC 62.509 63.158 19.50 0.00 0.00 5.68
100 101 4.736896 GAGTCGACACCCACGCCC 62.737 72.222 19.50 0.00 0.00 6.13
124 125 4.489771 CCCGGCTCCCACCATGAC 62.490 72.222 0.00 0.00 0.00 3.06
125 126 4.838152 CCGGCTCCCACCATGACG 62.838 72.222 0.00 0.00 0.00 4.35
126 127 4.838152 CGGCTCCCACCATGACGG 62.838 72.222 0.00 0.00 42.50 4.79
127 128 4.489771 GGCTCCCACCATGACGGG 62.490 72.222 12.10 12.10 44.60 5.28
130 131 2.687200 TCCCACCATGACGGGAGG 60.687 66.667 15.96 0.00 46.93 4.30
131 132 2.687200 CCCACCATGACGGGAGGA 60.687 66.667 12.83 0.00 46.34 3.71
132 133 2.735772 CCCACCATGACGGGAGGAG 61.736 68.421 12.83 0.00 46.34 3.69
133 134 2.187946 CACCATGACGGGAGGAGC 59.812 66.667 0.00 0.00 40.22 4.70
134 135 3.461773 ACCATGACGGGAGGAGCG 61.462 66.667 0.00 0.00 40.22 5.03
135 136 4.227134 CCATGACGGGAGGAGCGG 62.227 72.222 0.00 0.00 0.00 5.52
136 137 4.899239 CATGACGGGAGGAGCGGC 62.899 72.222 0.00 0.00 0.00 6.53
152 153 4.314440 GCGCCACTGACCTGACCA 62.314 66.667 0.00 0.00 0.00 4.02
153 154 2.047844 CGCCACTGACCTGACCAG 60.048 66.667 0.00 0.00 37.64 4.00
154 155 2.574018 CGCCACTGACCTGACCAGA 61.574 63.158 0.00 0.00 35.69 3.86
155 156 1.004440 GCCACTGACCTGACCAGAC 60.004 63.158 0.00 0.00 35.69 3.51
156 157 1.674057 CCACTGACCTGACCAGACC 59.326 63.158 0.00 0.00 35.69 3.85
157 158 1.290324 CACTGACCTGACCAGACCG 59.710 63.158 0.00 0.00 35.69 4.79
158 159 1.153061 ACTGACCTGACCAGACCGA 59.847 57.895 0.00 0.00 35.69 4.69
159 160 1.179814 ACTGACCTGACCAGACCGAC 61.180 60.000 0.00 0.00 35.69 4.79
160 161 1.152631 TGACCTGACCAGACCGACA 60.153 57.895 0.00 0.00 0.00 4.35
161 162 0.757561 TGACCTGACCAGACCGACAA 60.758 55.000 0.00 0.00 0.00 3.18
162 163 0.391597 GACCTGACCAGACCGACAAA 59.608 55.000 0.00 0.00 0.00 2.83
163 164 1.002087 GACCTGACCAGACCGACAAAT 59.998 52.381 0.00 0.00 0.00 2.32
164 165 2.232941 GACCTGACCAGACCGACAAATA 59.767 50.000 0.00 0.00 0.00 1.40
165 166 2.233922 ACCTGACCAGACCGACAAATAG 59.766 50.000 0.00 0.00 0.00 1.73
166 167 2.271800 CTGACCAGACCGACAAATAGC 58.728 52.381 0.00 0.00 0.00 2.97
167 168 1.066430 TGACCAGACCGACAAATAGCC 60.066 52.381 0.00 0.00 0.00 3.93
168 169 0.981183 ACCAGACCGACAAATAGCCA 59.019 50.000 0.00 0.00 0.00 4.75
169 170 1.559682 ACCAGACCGACAAATAGCCAT 59.440 47.619 0.00 0.00 0.00 4.40
170 171 1.942657 CCAGACCGACAAATAGCCATG 59.057 52.381 0.00 0.00 0.00 3.66
171 172 2.419990 CCAGACCGACAAATAGCCATGA 60.420 50.000 0.00 0.00 0.00 3.07
172 173 3.270027 CAGACCGACAAATAGCCATGAA 58.730 45.455 0.00 0.00 0.00 2.57
173 174 3.310774 CAGACCGACAAATAGCCATGAAG 59.689 47.826 0.00 0.00 0.00 3.02
174 175 2.614057 GACCGACAAATAGCCATGAAGG 59.386 50.000 0.00 0.00 41.84 3.46
175 176 2.238646 ACCGACAAATAGCCATGAAGGA 59.761 45.455 0.00 0.00 41.22 3.36
176 177 2.874701 CCGACAAATAGCCATGAAGGAG 59.125 50.000 0.00 0.00 41.22 3.69
177 178 2.289002 CGACAAATAGCCATGAAGGAGC 59.711 50.000 0.00 0.00 41.22 4.70
178 179 3.549794 GACAAATAGCCATGAAGGAGCT 58.450 45.455 0.00 0.00 41.22 4.09
179 180 3.549794 ACAAATAGCCATGAAGGAGCTC 58.450 45.455 4.71 4.71 41.22 4.09
180 181 2.883386 CAAATAGCCATGAAGGAGCTCC 59.117 50.000 26.22 26.22 41.22 4.70
181 182 0.683973 ATAGCCATGAAGGAGCTCCG 59.316 55.000 26.95 12.72 41.22 4.63
182 183 0.397114 TAGCCATGAAGGAGCTCCGA 60.397 55.000 26.95 15.33 41.22 4.55
183 184 1.227497 GCCATGAAGGAGCTCCGAG 60.227 63.158 26.95 15.14 41.22 4.63
184 185 1.680522 GCCATGAAGGAGCTCCGAGA 61.681 60.000 26.95 14.59 41.22 4.04
185 186 1.047002 CCATGAAGGAGCTCCGAGAT 58.953 55.000 26.95 16.20 41.22 2.75
186 187 1.270199 CCATGAAGGAGCTCCGAGATG 60.270 57.143 26.95 24.97 41.22 2.90
187 188 0.392336 ATGAAGGAGCTCCGAGATGC 59.608 55.000 26.95 9.00 42.08 3.91
188 189 0.972471 TGAAGGAGCTCCGAGATGCA 60.972 55.000 26.95 11.79 42.08 3.96
189 190 0.392336 GAAGGAGCTCCGAGATGCAT 59.608 55.000 26.95 0.00 42.08 3.96
190 191 0.392336 AAGGAGCTCCGAGATGCATC 59.608 55.000 26.95 19.37 42.08 3.91
191 192 0.469705 AGGAGCTCCGAGATGCATCT 60.470 55.000 29.09 29.09 42.08 2.90
192 193 0.319727 GGAGCTCCGAGATGCATCTG 60.320 60.000 33.33 22.73 37.25 2.90
193 194 0.945265 GAGCTCCGAGATGCATCTGC 60.945 60.000 33.33 27.25 37.25 4.26
194 195 1.069427 GCTCCGAGATGCATCTGCT 59.931 57.895 33.33 10.56 42.66 4.24
195 196 1.222766 GCTCCGAGATGCATCTGCTG 61.223 60.000 33.33 20.83 42.66 4.41
196 197 0.388294 CTCCGAGATGCATCTGCTGA 59.612 55.000 33.33 22.47 42.66 4.26
197 198 1.001068 CTCCGAGATGCATCTGCTGAT 59.999 52.381 33.33 8.91 42.66 2.90
207 208 2.702898 ATCTGCTGATGACGAGATCG 57.297 50.000 5.15 0.00 46.33 3.69
218 219 3.577231 CGAGATCGTGATTGGGGAG 57.423 57.895 0.00 0.00 34.11 4.30
219 220 0.032678 CGAGATCGTGATTGGGGAGG 59.967 60.000 0.00 0.00 34.11 4.30
220 221 1.414158 GAGATCGTGATTGGGGAGGA 58.586 55.000 0.00 0.00 0.00 3.71
221 222 1.762957 GAGATCGTGATTGGGGAGGAA 59.237 52.381 0.00 0.00 0.00 3.36
222 223 2.170607 GAGATCGTGATTGGGGAGGAAA 59.829 50.000 0.00 0.00 0.00 3.13
223 224 2.092914 AGATCGTGATTGGGGAGGAAAC 60.093 50.000 0.00 0.00 0.00 2.78
224 225 1.060729 TCGTGATTGGGGAGGAAACA 58.939 50.000 0.00 0.00 0.00 2.83
225 226 1.165270 CGTGATTGGGGAGGAAACAC 58.835 55.000 0.00 0.00 0.00 3.32
226 227 1.545841 GTGATTGGGGAGGAAACACC 58.454 55.000 0.00 0.00 40.88 4.16
227 228 0.037590 TGATTGGGGAGGAAACACCG 59.962 55.000 0.00 0.00 42.82 4.94
228 229 0.679960 GATTGGGGAGGAAACACCGG 60.680 60.000 0.00 0.00 42.82 5.28
229 230 2.150014 ATTGGGGAGGAAACACCGGG 62.150 60.000 6.32 0.00 42.82 5.73
230 231 2.931649 GGGGAGGAAACACCGGGA 60.932 66.667 6.32 0.00 42.82 5.14
231 232 2.669240 GGGAGGAAACACCGGGAG 59.331 66.667 6.32 0.00 42.82 4.30
252 253 3.691342 CGAGGGCGACAACAGGGA 61.691 66.667 0.00 0.00 40.82 4.20
253 254 2.990479 GAGGGCGACAACAGGGAT 59.010 61.111 0.00 0.00 0.00 3.85
254 255 1.450312 GAGGGCGACAACAGGGATG 60.450 63.158 0.00 0.00 0.00 3.51
255 256 2.438434 GGGCGACAACAGGGATGG 60.438 66.667 0.00 0.00 0.00 3.51
256 257 2.438434 GGCGACAACAGGGATGGG 60.438 66.667 0.00 0.00 0.00 4.00
257 258 2.668632 GCGACAACAGGGATGGGA 59.331 61.111 0.00 0.00 0.00 4.37
258 259 1.224592 GCGACAACAGGGATGGGAT 59.775 57.895 0.00 0.00 0.00 3.85
259 260 0.468226 GCGACAACAGGGATGGGATA 59.532 55.000 0.00 0.00 0.00 2.59
260 261 1.541233 GCGACAACAGGGATGGGATAG 60.541 57.143 0.00 0.00 0.00 2.08
261 262 2.039418 CGACAACAGGGATGGGATAGA 58.961 52.381 0.00 0.00 0.00 1.98
262 263 2.434336 CGACAACAGGGATGGGATAGAA 59.566 50.000 0.00 0.00 0.00 2.10
263 264 3.493350 CGACAACAGGGATGGGATAGAAG 60.493 52.174 0.00 0.00 0.00 2.85
264 265 2.780010 ACAACAGGGATGGGATAGAAGG 59.220 50.000 0.00 0.00 0.00 3.46
265 266 3.048600 CAACAGGGATGGGATAGAAGGA 58.951 50.000 0.00 0.00 0.00 3.36
266 267 2.983296 ACAGGGATGGGATAGAAGGAG 58.017 52.381 0.00 0.00 0.00 3.69
267 268 2.264455 CAGGGATGGGATAGAAGGAGG 58.736 57.143 0.00 0.00 0.00 4.30
268 269 0.988063 GGGATGGGATAGAAGGAGGC 59.012 60.000 0.00 0.00 0.00 4.70
269 270 0.610687 GGATGGGATAGAAGGAGGCG 59.389 60.000 0.00 0.00 0.00 5.52
270 271 0.610687 GATGGGATAGAAGGAGGCGG 59.389 60.000 0.00 0.00 0.00 6.13
271 272 0.838122 ATGGGATAGAAGGAGGCGGG 60.838 60.000 0.00 0.00 0.00 6.13
272 273 2.217745 GGGATAGAAGGAGGCGGGG 61.218 68.421 0.00 0.00 0.00 5.73
653 654 5.459536 GATTCCCCTTCTCAAATATTGCC 57.540 43.478 0.00 0.00 0.00 4.52
654 655 4.329638 TTCCCCTTCTCAAATATTGCCA 57.670 40.909 0.00 0.00 0.00 4.92
655 656 4.329638 TCCCCTTCTCAAATATTGCCAA 57.670 40.909 0.00 0.00 0.00 4.52
656 657 4.682563 TCCCCTTCTCAAATATTGCCAAA 58.317 39.130 0.00 0.00 0.00 3.28
657 658 4.466015 TCCCCTTCTCAAATATTGCCAAAC 59.534 41.667 0.00 0.00 0.00 2.93
658 659 4.222588 CCCCTTCTCAAATATTGCCAAACA 59.777 41.667 0.00 0.00 0.00 2.83
659 660 5.170748 CCCTTCTCAAATATTGCCAAACAC 58.829 41.667 0.00 0.00 0.00 3.32
660 661 4.858692 CCTTCTCAAATATTGCCAAACACG 59.141 41.667 0.00 0.00 0.00 4.49
661 662 3.832276 TCTCAAATATTGCCAAACACGC 58.168 40.909 0.00 0.00 0.00 5.34
662 663 3.505680 TCTCAAATATTGCCAAACACGCT 59.494 39.130 0.00 0.00 0.00 5.07
663 664 3.573598 TCAAATATTGCCAAACACGCTG 58.426 40.909 0.00 0.00 0.00 5.18
664 665 1.994916 AATATTGCCAAACACGCTGC 58.005 45.000 0.00 0.00 0.00 5.25
665 666 0.887247 ATATTGCCAAACACGCTGCA 59.113 45.000 0.00 0.00 0.00 4.41
666 667 0.240678 TATTGCCAAACACGCTGCAG 59.759 50.000 10.11 10.11 34.81 4.41
667 668 1.737355 ATTGCCAAACACGCTGCAGT 61.737 50.000 16.64 0.00 34.81 4.40
668 669 1.943116 TTGCCAAACACGCTGCAGTT 61.943 50.000 16.64 0.00 34.81 3.16
669 670 1.945662 GCCAAACACGCTGCAGTTG 60.946 57.895 16.64 15.09 0.00 3.16
670 671 1.433064 CCAAACACGCTGCAGTTGT 59.567 52.632 16.64 15.76 0.00 3.32
671 672 0.179140 CCAAACACGCTGCAGTTGTT 60.179 50.000 22.80 22.80 0.00 2.83
672 673 0.915904 CAAACACGCTGCAGTTGTTG 59.084 50.000 26.68 19.24 0.00 3.33
673 674 0.179140 AAACACGCTGCAGTTGTTGG 60.179 50.000 26.68 13.80 0.00 3.77
674 675 2.353839 CACGCTGCAGTTGTTGGC 60.354 61.111 16.64 0.00 0.00 4.52
675 676 2.828095 ACGCTGCAGTTGTTGGCA 60.828 55.556 16.64 0.00 38.52 4.92
676 677 2.195567 ACGCTGCAGTTGTTGGCAT 61.196 52.632 16.64 0.00 39.65 4.40
677 678 0.888736 ACGCTGCAGTTGTTGGCATA 60.889 50.000 16.64 0.00 39.65 3.14
678 679 0.179181 CGCTGCAGTTGTTGGCATAG 60.179 55.000 16.64 0.00 39.65 2.23
679 680 1.167851 GCTGCAGTTGTTGGCATAGA 58.832 50.000 16.64 0.00 39.65 1.98
680 681 1.131883 GCTGCAGTTGTTGGCATAGAG 59.868 52.381 16.64 0.00 39.65 2.43
681 682 2.430465 CTGCAGTTGTTGGCATAGAGT 58.570 47.619 5.25 0.00 39.65 3.24
682 683 3.599343 CTGCAGTTGTTGGCATAGAGTA 58.401 45.455 5.25 0.00 39.65 2.59
683 684 4.194640 CTGCAGTTGTTGGCATAGAGTAT 58.805 43.478 5.25 0.00 39.65 2.12
684 685 5.351948 TGCAGTTGTTGGCATAGAGTATA 57.648 39.130 0.00 0.00 34.58 1.47
685 686 5.739959 TGCAGTTGTTGGCATAGAGTATAA 58.260 37.500 0.00 0.00 34.58 0.98
686 687 6.176896 TGCAGTTGTTGGCATAGAGTATAAA 58.823 36.000 0.00 0.00 34.58 1.40
687 688 6.093495 TGCAGTTGTTGGCATAGAGTATAAAC 59.907 38.462 0.00 0.00 34.58 2.01
688 689 6.316390 GCAGTTGTTGGCATAGAGTATAAACT 59.684 38.462 0.00 0.00 39.21 2.66
689 690 7.494625 GCAGTTGTTGGCATAGAGTATAAACTA 59.505 37.037 0.00 0.00 35.56 2.24
690 691 9.547753 CAGTTGTTGGCATAGAGTATAAACTAT 57.452 33.333 0.00 0.00 35.56 2.12
708 709 6.716898 AACTATTAAACCACTGTTACTCGC 57.283 37.500 0.00 0.00 33.30 5.03
709 710 5.786311 ACTATTAAACCACTGTTACTCGCA 58.214 37.500 0.00 0.00 33.30 5.10
740 741 8.910351 AAGTTAAATATCACCTGAGGCTAATC 57.090 34.615 0.00 0.00 0.00 1.75
839 840 4.575236 AGGTCGGAAAAAGAGAACAGAAAC 59.425 41.667 0.00 0.00 0.00 2.78
849 850 6.850752 AAGAGAACAGAAACCAAAAGGAAA 57.149 33.333 0.00 0.00 0.00 3.13
854 855 7.851228 AGAACAGAAACCAAAAGGAAAGAAAT 58.149 30.769 0.00 0.00 0.00 2.17
855 856 7.765819 AGAACAGAAACCAAAAGGAAAGAAATG 59.234 33.333 0.00 0.00 0.00 2.32
858 859 3.769739 ACCAAAAGGAAAGAAATGGGC 57.230 42.857 0.00 0.00 32.21 5.36
881 888 0.701147 AGGAGGGAAGGAAGCAAAGG 59.299 55.000 0.00 0.00 0.00 3.11
1092 1101 2.954868 CCGGATTCGTCGCCTTCG 60.955 66.667 0.00 0.00 33.95 3.79
1119 1128 2.577593 GAGGACTACCACACGCCC 59.422 66.667 0.00 0.00 38.94 6.13
1433 1442 2.111251 GCCATCGCCTCTAACCCC 59.889 66.667 0.00 0.00 0.00 4.95
1609 1618 3.116463 ATCGCGCCACTACGATGA 58.884 55.556 0.00 0.00 46.56 2.92
1811 1820 2.362736 TCGCTACGATCAGTACAGGTT 58.637 47.619 0.00 0.00 0.00 3.50
1827 1838 3.340814 AGGTTAGTGATCACCTGCTTG 57.659 47.619 22.21 0.00 42.20 4.01
1844 1855 5.336213 CCTGCTTGCAGTACATGATTCTTTT 60.336 40.000 19.49 0.00 0.00 2.27
1858 1873 4.466015 TGATTCTTTTCCCCCTGCATTTAC 59.534 41.667 0.00 0.00 0.00 2.01
1910 1925 7.389053 ACGCTTAGAATGAGTTCTTTGATCTTT 59.611 33.333 0.00 0.00 41.92 2.52
1931 1950 6.539464 TCTTTCTTTTAACGAAGCAGTTACCA 59.461 34.615 0.00 0.00 36.44 3.25
1947 1966 6.183360 GCAGTTACCATGGAGTAAGTATCTGA 60.183 42.308 21.47 0.00 35.78 3.27
1949 1968 7.068839 CAGTTACCATGGAGTAAGTATCTGACT 59.931 40.741 21.47 0.73 41.56 3.41
1999 2018 6.693978 CGATACATCACCACGATAAAACAGTA 59.306 38.462 0.00 0.00 31.20 2.74
2000 2019 7.305820 CGATACATCACCACGATAAAACAGTAC 60.306 40.741 0.00 0.00 31.20 2.73
2001 2020 5.790593 ACATCACCACGATAAAACAGTACT 58.209 37.500 0.00 0.00 31.20 2.73
2002 2021 5.637810 ACATCACCACGATAAAACAGTACTG 59.362 40.000 21.44 21.44 31.20 2.74
2003 2022 3.991773 TCACCACGATAAAACAGTACTGC 59.008 43.478 22.90 4.37 0.00 4.40
2193 2213 1.743996 GCAGTCCCTGAACCTGAATC 58.256 55.000 0.00 0.00 32.44 2.52
2195 2215 0.905357 AGTCCCTGAACCTGAATCCG 59.095 55.000 0.00 0.00 0.00 4.18
2200 3597 4.100498 GTCCCTGAACCTGAATCCGTTATA 59.900 45.833 0.00 0.00 0.00 0.98
2211 3608 4.638421 TGAATCCGTTATACTGGCTTTTGG 59.362 41.667 0.00 0.00 0.00 3.28
2250 3647 5.564550 CTTCTTTCATCTTCTTGGGAGGAA 58.435 41.667 0.00 0.00 32.80 3.36
2280 3677 3.760151 CTCTGTTCTTCCCAATTGCATGA 59.240 43.478 0.00 0.00 0.00 3.07
2333 3730 1.135373 CGTCTGTGCCTACTCAATCGT 60.135 52.381 0.00 0.00 0.00 3.73
2585 3982 0.904865 TGTCGAGGTTCAGCCAGGAT 60.905 55.000 0.00 0.00 40.61 3.24
2697 4094 9.421806 CTAATCTCTTCAGCATGGTCTAATTAG 57.578 37.037 6.11 6.11 36.16 1.73
2806 4221 2.554142 ACGATCGACTGATACCGTACA 58.446 47.619 24.34 0.00 34.09 2.90
2817 4232 2.945447 TACCGTACATTGTTCTCGGG 57.055 50.000 22.05 7.93 44.54 5.14
2945 4361 3.547054 ACTCGAGTACTCCCTCTGTAG 57.453 52.381 18.46 6.09 0.00 2.74
2946 4362 3.106054 ACTCGAGTACTCCCTCTGTAGA 58.894 50.000 18.46 5.14 0.00 2.59
2947 4363 3.118665 ACTCGAGTACTCCCTCTGTAGAC 60.119 52.174 18.46 0.00 0.00 2.59
2948 4364 3.106054 TCGAGTACTCCCTCTGTAGACT 58.894 50.000 17.23 0.00 0.00 3.24
2949 4365 4.285020 TCGAGTACTCCCTCTGTAGACTA 58.715 47.826 17.23 0.00 0.00 2.59
2950 4366 4.713814 TCGAGTACTCCCTCTGTAGACTAA 59.286 45.833 17.23 0.00 0.00 2.24
2951 4367 5.051816 CGAGTACTCCCTCTGTAGACTAAG 58.948 50.000 17.23 0.00 0.00 2.18
3120 4538 8.800370 TTACATGTAAAATCTCAGTGCCATAA 57.200 30.769 15.92 0.00 0.00 1.90
3171 4589 3.380004 TGTCAAGTTGAACATGGTTCACC 59.620 43.478 7.25 5.03 0.00 4.02
3228 4646 1.061033 AGATCATACCTGAGGGGCCTT 60.061 52.381 2.38 0.00 39.10 4.35
3351 4769 3.901797 CTTCTCCGCCACCACCACC 62.902 68.421 0.00 0.00 0.00 4.61
3414 4832 0.532573 AGTTGTCGGCGATGATCACT 59.467 50.000 14.79 8.17 0.00 3.41
3450 4868 2.041265 AGGGCCTCCACGATCCTT 59.959 61.111 0.00 0.00 34.83 3.36
3649 5067 1.431036 GCAAAGAAGGCGAGGATGC 59.569 57.895 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.802880 CGATCTAACAAGGCCTCACCG 60.803 57.143 5.23 0.00 46.52 4.94
1 2 1.473434 CCGATCTAACAAGGCCTCACC 60.473 57.143 5.23 0.00 39.61 4.02
3 4 0.830648 CCCGATCTAACAAGGCCTCA 59.169 55.000 5.23 0.00 0.00 3.86
4 5 0.831307 ACCCGATCTAACAAGGCCTC 59.169 55.000 5.23 0.00 0.00 4.70
6 7 0.539986 TGACCCGATCTAACAAGGCC 59.460 55.000 0.00 0.00 0.00 5.19
7 8 2.213499 CATGACCCGATCTAACAAGGC 58.787 52.381 0.00 0.00 0.00 4.35
8 9 3.543680 ACATGACCCGATCTAACAAGG 57.456 47.619 0.00 0.00 0.00 3.61
9 10 5.043903 CAGTACATGACCCGATCTAACAAG 58.956 45.833 0.00 0.00 0.00 3.16
10 11 4.707934 TCAGTACATGACCCGATCTAACAA 59.292 41.667 0.00 0.00 31.12 2.83
11 12 4.274978 TCAGTACATGACCCGATCTAACA 58.725 43.478 0.00 0.00 31.12 2.41
12 13 4.913335 TCAGTACATGACCCGATCTAAC 57.087 45.455 0.00 0.00 31.12 2.34
13 14 5.925506 TTTCAGTACATGACCCGATCTAA 57.074 39.130 0.00 0.00 37.77 2.10
14 15 5.833667 AGATTTCAGTACATGACCCGATCTA 59.166 40.000 0.00 0.00 37.77 1.98
15 16 4.651503 AGATTTCAGTACATGACCCGATCT 59.348 41.667 0.00 0.00 37.77 2.75
16 17 4.950050 AGATTTCAGTACATGACCCGATC 58.050 43.478 0.00 0.00 37.77 3.69
17 18 5.118990 CAAGATTTCAGTACATGACCCGAT 58.881 41.667 0.00 0.00 37.77 4.18
18 19 4.020573 ACAAGATTTCAGTACATGACCCGA 60.021 41.667 0.00 0.00 37.77 5.14
19 20 4.253685 ACAAGATTTCAGTACATGACCCG 58.746 43.478 0.00 0.00 37.77 5.28
20 21 7.103641 TCTAACAAGATTTCAGTACATGACCC 58.896 38.462 0.00 0.00 37.77 4.46
21 22 8.723942 ATCTAACAAGATTTCAGTACATGACC 57.276 34.615 0.00 0.00 37.77 4.02
22 23 8.821894 GGATCTAACAAGATTTCAGTACATGAC 58.178 37.037 0.00 0.00 37.77 3.06
23 24 8.539544 TGGATCTAACAAGATTTCAGTACATGA 58.460 33.333 0.00 0.00 35.62 3.07
24 25 8.722480 TGGATCTAACAAGATTTCAGTACATG 57.278 34.615 0.00 0.00 0.00 3.21
25 26 9.911788 AATGGATCTAACAAGATTTCAGTACAT 57.088 29.630 0.00 0.00 0.00 2.29
26 27 9.166173 CAATGGATCTAACAAGATTTCAGTACA 57.834 33.333 0.00 0.00 0.00 2.90
27 28 8.616076 CCAATGGATCTAACAAGATTTCAGTAC 58.384 37.037 0.00 0.00 0.00 2.73
28 29 8.548025 TCCAATGGATCTAACAAGATTTCAGTA 58.452 33.333 0.00 0.00 0.00 2.74
29 30 7.405292 TCCAATGGATCTAACAAGATTTCAGT 58.595 34.615 0.00 0.00 0.00 3.41
30 31 7.870509 TCCAATGGATCTAACAAGATTTCAG 57.129 36.000 0.00 0.00 0.00 3.02
31 32 7.669304 TGTTCCAATGGATCTAACAAGATTTCA 59.331 33.333 1.39 0.00 0.00 2.69
32 33 8.055279 TGTTCCAATGGATCTAACAAGATTTC 57.945 34.615 1.39 0.00 0.00 2.17
33 34 8.421249 TTGTTCCAATGGATCTAACAAGATTT 57.579 30.769 11.91 0.00 35.69 2.17
34 35 8.472413 CATTGTTCCAATGGATCTAACAAGATT 58.528 33.333 18.51 4.14 41.70 2.40
35 36 7.835682 TCATTGTTCCAATGGATCTAACAAGAT 59.164 33.333 18.51 4.72 41.70 2.40
36 37 7.121168 GTCATTGTTCCAATGGATCTAACAAGA 59.879 37.037 18.51 13.89 41.70 3.02
37 38 7.253422 GTCATTGTTCCAATGGATCTAACAAG 58.747 38.462 18.51 12.39 41.70 3.16
38 39 6.128035 CGTCATTGTTCCAATGGATCTAACAA 60.128 38.462 16.69 16.69 42.35 2.83
39 40 5.353956 CGTCATTGTTCCAATGGATCTAACA 59.646 40.000 1.39 0.98 0.00 2.41
40 41 5.730568 GCGTCATTGTTCCAATGGATCTAAC 60.731 44.000 1.39 0.00 0.00 2.34
41 42 4.335315 GCGTCATTGTTCCAATGGATCTAA 59.665 41.667 1.39 0.00 0.00 2.10
42 43 3.876914 GCGTCATTGTTCCAATGGATCTA 59.123 43.478 1.39 0.00 0.00 1.98
43 44 2.684881 GCGTCATTGTTCCAATGGATCT 59.315 45.455 1.39 0.00 0.00 2.75
44 45 2.223572 GGCGTCATTGTTCCAATGGATC 60.224 50.000 1.39 2.60 0.00 3.36
45 46 1.750778 GGCGTCATTGTTCCAATGGAT 59.249 47.619 1.39 0.00 0.00 3.41
46 47 1.173043 GGCGTCATTGTTCCAATGGA 58.827 50.000 14.93 0.00 0.00 3.41
47 48 0.173255 GGGCGTCATTGTTCCAATGG 59.827 55.000 14.93 0.00 0.00 3.16
48 49 1.176527 AGGGCGTCATTGTTCCAATG 58.823 50.000 10.04 10.04 0.00 2.82
49 50 1.923356 AAGGGCGTCATTGTTCCAAT 58.077 45.000 0.00 0.00 0.00 3.16
50 51 1.339610 CAAAGGGCGTCATTGTTCCAA 59.660 47.619 0.00 0.00 0.00 3.53
51 52 0.958091 CAAAGGGCGTCATTGTTCCA 59.042 50.000 0.00 0.00 0.00 3.53
52 53 0.243636 CCAAAGGGCGTCATTGTTCC 59.756 55.000 0.00 0.00 0.00 3.62
53 54 1.243902 TCCAAAGGGCGTCATTGTTC 58.756 50.000 0.00 0.00 0.00 3.18
54 55 1.339929 GTTCCAAAGGGCGTCATTGTT 59.660 47.619 0.00 0.00 0.00 2.83
55 56 0.958822 GTTCCAAAGGGCGTCATTGT 59.041 50.000 0.00 0.00 0.00 2.71
56 57 0.243636 GGTTCCAAAGGGCGTCATTG 59.756 55.000 0.00 0.00 0.00 2.82
57 58 0.178975 TGGTTCCAAAGGGCGTCATT 60.179 50.000 0.00 0.00 0.00 2.57
58 59 0.609131 CTGGTTCCAAAGGGCGTCAT 60.609 55.000 0.00 0.00 0.00 3.06
59 60 1.228124 CTGGTTCCAAAGGGCGTCA 60.228 57.895 0.00 0.00 0.00 4.35
60 61 1.228154 ACTGGTTCCAAAGGGCGTC 60.228 57.895 0.00 0.00 0.00 5.19
61 62 1.528309 CACTGGTTCCAAAGGGCGT 60.528 57.895 0.00 0.00 0.00 5.68
62 63 2.268076 CCACTGGTTCCAAAGGGCG 61.268 63.158 0.00 0.00 0.00 6.13
63 64 0.759060 AACCACTGGTTCCAAAGGGC 60.759 55.000 7.72 0.00 43.05 5.19
64 65 1.039856 CAACCACTGGTTCCAAAGGG 58.960 55.000 10.77 7.52 43.05 3.95
65 66 1.956477 CTCAACCACTGGTTCCAAAGG 59.044 52.381 10.77 0.00 43.05 3.11
66 67 2.618709 GACTCAACCACTGGTTCCAAAG 59.381 50.000 10.77 8.60 43.05 2.77
67 68 2.650322 GACTCAACCACTGGTTCCAAA 58.350 47.619 10.77 0.00 43.05 3.28
68 69 1.474320 CGACTCAACCACTGGTTCCAA 60.474 52.381 10.77 0.00 43.05 3.53
69 70 0.105964 CGACTCAACCACTGGTTCCA 59.894 55.000 10.77 0.00 43.05 3.53
70 71 0.391597 TCGACTCAACCACTGGTTCC 59.608 55.000 10.77 0.62 43.05 3.62
71 72 1.202486 TGTCGACTCAACCACTGGTTC 60.202 52.381 17.92 0.00 43.05 3.62
73 74 0.104304 GTGTCGACTCAACCACTGGT 59.896 55.000 17.92 0.00 37.65 4.00
74 75 0.600255 GGTGTCGACTCAACCACTGG 60.600 60.000 17.92 0.00 0.00 4.00
75 76 0.600255 GGGTGTCGACTCAACCACTG 60.600 60.000 21.23 0.00 43.97 3.66
76 77 1.746517 GGGTGTCGACTCAACCACT 59.253 57.895 21.23 0.00 43.97 4.00
77 78 4.355925 GGGTGTCGACTCAACCAC 57.644 61.111 21.23 9.05 43.97 4.16
79 80 1.663702 CGTGGGTGTCGACTCAACC 60.664 63.158 17.92 15.58 44.71 3.77
80 81 2.308039 GCGTGGGTGTCGACTCAAC 61.308 63.158 17.92 13.63 33.03 3.18
81 82 2.028484 GCGTGGGTGTCGACTCAA 59.972 61.111 17.92 2.63 33.03 3.02
82 83 3.986006 GGCGTGGGTGTCGACTCA 61.986 66.667 17.92 9.69 33.14 3.41
83 84 4.736896 GGGCGTGGGTGTCGACTC 62.737 72.222 17.92 13.38 36.49 3.36
88 89 4.388499 ATCACGGGCGTGGGTGTC 62.388 66.667 0.00 0.00 45.43 3.67
89 90 4.697756 CATCACGGGCGTGGGTGT 62.698 66.667 0.00 0.00 45.43 4.16
107 108 4.489771 GTCATGGTGGGAGCCGGG 62.490 72.222 2.18 0.00 0.00 5.73
108 109 4.838152 CGTCATGGTGGGAGCCGG 62.838 72.222 0.00 0.00 0.00 6.13
109 110 4.838152 CCGTCATGGTGGGAGCCG 62.838 72.222 0.00 0.00 0.00 5.52
115 116 2.903357 CTCCTCCCGTCATGGTGG 59.097 66.667 0.00 0.00 39.86 4.61
116 117 2.187946 GCTCCTCCCGTCATGGTG 59.812 66.667 0.00 0.00 35.15 4.17
117 118 3.461773 CGCTCCTCCCGTCATGGT 61.462 66.667 0.00 0.00 35.15 3.55
118 119 4.227134 CCGCTCCTCCCGTCATGG 62.227 72.222 0.00 0.00 37.55 3.66
119 120 4.899239 GCCGCTCCTCCCGTCATG 62.899 72.222 0.00 0.00 0.00 3.07
135 136 4.314440 TGGTCAGGTCAGTGGCGC 62.314 66.667 0.00 0.00 0.00 6.53
136 137 2.047844 CTGGTCAGGTCAGTGGCG 60.048 66.667 0.00 0.00 0.00 5.69
137 138 1.004440 GTCTGGTCAGGTCAGTGGC 60.004 63.158 0.00 0.00 34.15 5.01
138 139 1.674057 GGTCTGGTCAGGTCAGTGG 59.326 63.158 0.00 0.00 34.15 4.00
139 140 1.179174 TCGGTCTGGTCAGGTCAGTG 61.179 60.000 0.00 0.00 34.15 3.66
140 141 1.153061 TCGGTCTGGTCAGGTCAGT 59.847 57.895 0.00 0.00 34.15 3.41
141 142 1.179174 TGTCGGTCTGGTCAGGTCAG 61.179 60.000 0.00 0.00 0.00 3.51
142 143 0.757561 TTGTCGGTCTGGTCAGGTCA 60.758 55.000 0.00 0.00 0.00 4.02
143 144 0.391597 TTTGTCGGTCTGGTCAGGTC 59.608 55.000 0.00 0.00 0.00 3.85
144 145 1.056660 ATTTGTCGGTCTGGTCAGGT 58.943 50.000 0.00 0.00 0.00 4.00
145 146 2.893637 CTATTTGTCGGTCTGGTCAGG 58.106 52.381 0.00 0.00 0.00 3.86
146 147 2.271800 GCTATTTGTCGGTCTGGTCAG 58.728 52.381 0.00 0.00 0.00 3.51
147 148 1.066430 GGCTATTTGTCGGTCTGGTCA 60.066 52.381 0.00 0.00 0.00 4.02
148 149 1.066430 TGGCTATTTGTCGGTCTGGTC 60.066 52.381 0.00 0.00 0.00 4.02
149 150 0.981183 TGGCTATTTGTCGGTCTGGT 59.019 50.000 0.00 0.00 0.00 4.00
150 151 1.942657 CATGGCTATTTGTCGGTCTGG 59.057 52.381 0.00 0.00 0.00 3.86
151 152 2.905075 TCATGGCTATTTGTCGGTCTG 58.095 47.619 0.00 0.00 0.00 3.51
152 153 3.535561 CTTCATGGCTATTTGTCGGTCT 58.464 45.455 0.00 0.00 0.00 3.85
153 154 2.614057 CCTTCATGGCTATTTGTCGGTC 59.386 50.000 0.00 0.00 0.00 4.79
154 155 2.238646 TCCTTCATGGCTATTTGTCGGT 59.761 45.455 0.00 0.00 35.26 4.69
155 156 2.874701 CTCCTTCATGGCTATTTGTCGG 59.125 50.000 0.00 0.00 35.26 4.79
156 157 2.289002 GCTCCTTCATGGCTATTTGTCG 59.711 50.000 0.00 0.00 35.26 4.35
157 158 3.549794 AGCTCCTTCATGGCTATTTGTC 58.450 45.455 0.00 0.00 34.31 3.18
158 159 3.549794 GAGCTCCTTCATGGCTATTTGT 58.450 45.455 0.87 0.00 36.37 2.83
159 160 2.883386 GGAGCTCCTTCATGGCTATTTG 59.117 50.000 26.25 0.00 36.37 2.32
160 161 2.486191 CGGAGCTCCTTCATGGCTATTT 60.486 50.000 29.73 0.00 36.37 1.40
161 162 1.071385 CGGAGCTCCTTCATGGCTATT 59.929 52.381 29.73 0.00 36.37 1.73
162 163 0.683973 CGGAGCTCCTTCATGGCTAT 59.316 55.000 29.73 0.00 36.37 2.97
163 164 0.397114 TCGGAGCTCCTTCATGGCTA 60.397 55.000 29.73 1.81 36.37 3.93
164 165 1.684386 CTCGGAGCTCCTTCATGGCT 61.684 60.000 29.73 0.00 39.16 4.75
165 166 1.227497 CTCGGAGCTCCTTCATGGC 60.227 63.158 29.73 1.58 35.26 4.40
166 167 1.047002 ATCTCGGAGCTCCTTCATGG 58.953 55.000 29.73 13.64 37.10 3.66
167 168 1.873069 GCATCTCGGAGCTCCTTCATG 60.873 57.143 29.73 25.04 0.00 3.07
168 169 0.392336 GCATCTCGGAGCTCCTTCAT 59.608 55.000 29.73 15.22 0.00 2.57
169 170 0.972471 TGCATCTCGGAGCTCCTTCA 60.972 55.000 29.73 13.57 0.00 3.02
170 171 0.392336 ATGCATCTCGGAGCTCCTTC 59.608 55.000 29.73 6.81 0.00 3.46
171 172 0.392336 GATGCATCTCGGAGCTCCTT 59.608 55.000 29.73 9.68 0.00 3.36
172 173 0.469705 AGATGCATCTCGGAGCTCCT 60.470 55.000 29.73 8.95 29.30 3.69
173 174 0.319727 CAGATGCATCTCGGAGCTCC 60.320 60.000 26.44 23.79 34.22 4.70
174 175 0.945265 GCAGATGCATCTCGGAGCTC 60.945 60.000 26.44 4.71 41.59 4.09
175 176 1.069427 GCAGATGCATCTCGGAGCT 59.931 57.895 26.44 0.91 41.59 4.09
176 177 1.069427 AGCAGATGCATCTCGGAGC 59.931 57.895 26.44 24.27 45.16 4.70
177 178 0.388294 TCAGCAGATGCATCTCGGAG 59.612 55.000 26.44 15.97 45.16 4.63
178 179 1.046204 ATCAGCAGATGCATCTCGGA 58.954 50.000 26.44 23.29 45.16 4.55
179 180 1.149148 CATCAGCAGATGCATCTCGG 58.851 55.000 26.44 19.49 44.61 4.63
188 189 2.702898 CGATCTCGTCATCAGCAGAT 57.297 50.000 0.00 0.00 32.35 2.90
200 201 0.032678 CCTCCCCAATCACGATCTCG 59.967 60.000 0.00 0.00 46.33 4.04
201 202 1.414158 TCCTCCCCAATCACGATCTC 58.586 55.000 0.00 0.00 0.00 2.75
202 203 1.879575 TTCCTCCCCAATCACGATCT 58.120 50.000 0.00 0.00 0.00 2.75
203 204 2.289565 GTTTCCTCCCCAATCACGATC 58.710 52.381 0.00 0.00 0.00 3.69
204 205 1.633432 TGTTTCCTCCCCAATCACGAT 59.367 47.619 0.00 0.00 0.00 3.73
205 206 1.060729 TGTTTCCTCCCCAATCACGA 58.939 50.000 0.00 0.00 0.00 4.35
206 207 1.165270 GTGTTTCCTCCCCAATCACG 58.835 55.000 0.00 0.00 0.00 4.35
207 208 1.545841 GGTGTTTCCTCCCCAATCAC 58.454 55.000 0.00 0.00 0.00 3.06
208 209 0.037590 CGGTGTTTCCTCCCCAATCA 59.962 55.000 0.00 0.00 0.00 2.57
209 210 0.679960 CCGGTGTTTCCTCCCCAATC 60.680 60.000 0.00 0.00 0.00 2.67
210 211 1.382629 CCGGTGTTTCCTCCCCAAT 59.617 57.895 0.00 0.00 0.00 3.16
211 212 2.836187 CCCGGTGTTTCCTCCCCAA 61.836 63.158 0.00 0.00 0.00 4.12
212 213 3.253838 CCCGGTGTTTCCTCCCCA 61.254 66.667 0.00 0.00 0.00 4.96
213 214 2.931649 TCCCGGTGTTTCCTCCCC 60.932 66.667 0.00 0.00 0.00 4.81
214 215 2.669240 CTCCCGGTGTTTCCTCCC 59.331 66.667 0.00 0.00 0.00 4.30
215 216 2.669240 CCTCCCGGTGTTTCCTCC 59.331 66.667 0.00 0.00 0.00 4.30
216 217 2.669240 CCCTCCCGGTGTTTCCTC 59.331 66.667 0.00 0.00 0.00 3.71
217 218 2.933834 CCCCTCCCGGTGTTTCCT 60.934 66.667 0.00 0.00 0.00 3.36
218 219 4.735358 GCCCCTCCCGGTGTTTCC 62.735 72.222 0.00 0.00 0.00 3.13
235 236 3.019003 ATCCCTGTTGTCGCCCTCG 62.019 63.158 0.00 0.00 0.00 4.63
236 237 1.450312 CATCCCTGTTGTCGCCCTC 60.450 63.158 0.00 0.00 0.00 4.30
237 238 2.671070 CATCCCTGTTGTCGCCCT 59.329 61.111 0.00 0.00 0.00 5.19
238 239 2.438434 CCATCCCTGTTGTCGCCC 60.438 66.667 0.00 0.00 0.00 6.13
239 240 2.270874 ATCCCATCCCTGTTGTCGCC 62.271 60.000 0.00 0.00 0.00 5.54
240 241 0.468226 TATCCCATCCCTGTTGTCGC 59.532 55.000 0.00 0.00 0.00 5.19
241 242 2.039418 TCTATCCCATCCCTGTTGTCG 58.961 52.381 0.00 0.00 0.00 4.35
242 243 3.181450 CCTTCTATCCCATCCCTGTTGTC 60.181 52.174 0.00 0.00 0.00 3.18
243 244 2.780010 CCTTCTATCCCATCCCTGTTGT 59.220 50.000 0.00 0.00 0.00 3.32
244 245 3.048600 TCCTTCTATCCCATCCCTGTTG 58.951 50.000 0.00 0.00 0.00 3.33
245 246 3.321950 CTCCTTCTATCCCATCCCTGTT 58.678 50.000 0.00 0.00 0.00 3.16
246 247 2.428484 CCTCCTTCTATCCCATCCCTGT 60.428 54.545 0.00 0.00 0.00 4.00
247 248 2.264455 CCTCCTTCTATCCCATCCCTG 58.736 57.143 0.00 0.00 0.00 4.45
248 249 1.485978 GCCTCCTTCTATCCCATCCCT 60.486 57.143 0.00 0.00 0.00 4.20
249 250 0.988063 GCCTCCTTCTATCCCATCCC 59.012 60.000 0.00 0.00 0.00 3.85
250 251 0.610687 CGCCTCCTTCTATCCCATCC 59.389 60.000 0.00 0.00 0.00 3.51
251 252 0.610687 CCGCCTCCTTCTATCCCATC 59.389 60.000 0.00 0.00 0.00 3.51
252 253 0.838122 CCCGCCTCCTTCTATCCCAT 60.838 60.000 0.00 0.00 0.00 4.00
253 254 1.459539 CCCGCCTCCTTCTATCCCA 60.460 63.158 0.00 0.00 0.00 4.37
254 255 2.217745 CCCCGCCTCCTTCTATCCC 61.218 68.421 0.00 0.00 0.00 3.85
255 256 3.472809 CCCCGCCTCCTTCTATCC 58.527 66.667 0.00 0.00 0.00 2.59
631 632 4.895297 TGGCAATATTTGAGAAGGGGAATC 59.105 41.667 0.00 0.00 0.00 2.52
632 633 4.882559 TGGCAATATTTGAGAAGGGGAAT 58.117 39.130 0.00 0.00 0.00 3.01
633 634 4.329638 TGGCAATATTTGAGAAGGGGAA 57.670 40.909 0.00 0.00 0.00 3.97
634 635 4.329638 TTGGCAATATTTGAGAAGGGGA 57.670 40.909 0.00 0.00 0.00 4.81
635 636 4.222588 TGTTTGGCAATATTTGAGAAGGGG 59.777 41.667 0.00 0.00 0.00 4.79
636 637 5.170748 GTGTTTGGCAATATTTGAGAAGGG 58.829 41.667 0.00 0.00 0.00 3.95
637 638 4.858692 CGTGTTTGGCAATATTTGAGAAGG 59.141 41.667 0.00 0.00 0.00 3.46
638 639 4.324402 GCGTGTTTGGCAATATTTGAGAAG 59.676 41.667 0.00 0.00 0.00 2.85
639 640 4.022416 AGCGTGTTTGGCAATATTTGAGAA 60.022 37.500 0.00 0.00 0.00 2.87
640 641 3.505680 AGCGTGTTTGGCAATATTTGAGA 59.494 39.130 0.00 0.00 0.00 3.27
641 642 3.609373 CAGCGTGTTTGGCAATATTTGAG 59.391 43.478 0.00 0.00 0.00 3.02
642 643 3.573598 CAGCGTGTTTGGCAATATTTGA 58.426 40.909 0.00 0.00 0.00 2.69
643 644 2.092524 GCAGCGTGTTTGGCAATATTTG 59.907 45.455 0.00 0.00 0.00 2.32
644 645 2.288702 TGCAGCGTGTTTGGCAATATTT 60.289 40.909 0.00 0.00 32.54 1.40
645 646 1.271934 TGCAGCGTGTTTGGCAATATT 59.728 42.857 0.00 0.00 32.54 1.28
646 647 0.887247 TGCAGCGTGTTTGGCAATAT 59.113 45.000 0.00 0.00 32.54 1.28
647 648 0.240678 CTGCAGCGTGTTTGGCAATA 59.759 50.000 0.00 0.00 35.59 1.90
648 649 1.007038 CTGCAGCGTGTTTGGCAAT 60.007 52.632 0.00 0.00 35.59 3.56
649 650 1.943116 AACTGCAGCGTGTTTGGCAA 61.943 50.000 15.27 0.00 35.59 4.52
650 651 2.413963 AACTGCAGCGTGTTTGGCA 61.414 52.632 15.27 0.00 34.66 4.92
651 652 1.945662 CAACTGCAGCGTGTTTGGC 60.946 57.895 15.27 0.00 0.00 4.52
652 653 0.179140 AACAACTGCAGCGTGTTTGG 60.179 50.000 23.80 2.05 0.00 3.28
653 654 0.915904 CAACAACTGCAGCGTGTTTG 59.084 50.000 25.88 19.06 0.00 2.93
654 655 0.179140 CCAACAACTGCAGCGTGTTT 60.179 50.000 25.88 13.64 0.00 2.83
655 656 1.433064 CCAACAACTGCAGCGTGTT 59.567 52.632 23.80 23.80 0.00 3.32
656 657 3.110139 CCAACAACTGCAGCGTGT 58.890 55.556 15.27 15.68 0.00 4.49
657 658 2.353839 GCCAACAACTGCAGCGTG 60.354 61.111 15.27 14.97 0.00 5.34
658 659 0.888736 TATGCCAACAACTGCAGCGT 60.889 50.000 15.27 8.78 41.46 5.07
659 660 0.179181 CTATGCCAACAACTGCAGCG 60.179 55.000 15.27 8.03 41.46 5.18
660 661 1.131883 CTCTATGCCAACAACTGCAGC 59.868 52.381 15.27 0.00 41.46 5.25
661 662 2.430465 ACTCTATGCCAACAACTGCAG 58.570 47.619 13.48 13.48 41.46 4.41
662 663 2.566833 ACTCTATGCCAACAACTGCA 57.433 45.000 0.00 0.00 42.52 4.41
663 664 6.316390 AGTTTATACTCTATGCCAACAACTGC 59.684 38.462 0.00 0.00 0.00 4.40
664 665 7.849804 AGTTTATACTCTATGCCAACAACTG 57.150 36.000 0.00 0.00 0.00 3.16
682 683 8.876790 GCGAGTAACAGTGGTTTAATAGTTTAT 58.123 33.333 0.00 0.00 38.45 1.40
683 684 7.871973 TGCGAGTAACAGTGGTTTAATAGTTTA 59.128 33.333 0.00 0.00 38.45 2.01
684 685 6.707161 TGCGAGTAACAGTGGTTTAATAGTTT 59.293 34.615 0.00 0.00 38.45 2.66
685 686 6.225318 TGCGAGTAACAGTGGTTTAATAGTT 58.775 36.000 0.00 0.00 38.45 2.24
686 687 5.786311 TGCGAGTAACAGTGGTTTAATAGT 58.214 37.500 0.00 0.00 38.45 2.12
687 688 6.715344 TTGCGAGTAACAGTGGTTTAATAG 57.285 37.500 0.00 0.00 38.45 1.73
688 689 7.493743 TTTTGCGAGTAACAGTGGTTTAATA 57.506 32.000 0.00 0.00 38.45 0.98
689 690 6.380095 TTTTGCGAGTAACAGTGGTTTAAT 57.620 33.333 0.00 0.00 38.45 1.40
690 691 5.814764 TTTTGCGAGTAACAGTGGTTTAA 57.185 34.783 0.00 0.00 38.45 1.52
691 692 5.814764 TTTTTGCGAGTAACAGTGGTTTA 57.185 34.783 0.00 0.00 38.45 2.01
692 693 4.705337 TTTTTGCGAGTAACAGTGGTTT 57.295 36.364 0.00 0.00 38.45 3.27
715 716 8.494433 TGATTAGCCTCAGGTGATATTTAACTT 58.506 33.333 0.00 0.00 0.00 2.66
717 718 8.150945 TCTGATTAGCCTCAGGTGATATTTAAC 58.849 37.037 8.26 0.00 42.42 2.01
720 721 6.753913 TCTGATTAGCCTCAGGTGATATTT 57.246 37.500 8.26 0.00 42.42 1.40
725 726 6.435591 CAGTATATCTGATTAGCCTCAGGTGA 59.564 42.308 0.00 0.00 46.27 4.02
746 747 7.659799 TCTCCAGAAATTTCGTTTGATTCAGTA 59.340 33.333 12.42 0.00 0.00 2.74
747 748 6.486657 TCTCCAGAAATTTCGTTTGATTCAGT 59.513 34.615 12.42 0.00 0.00 3.41
754 755 6.145535 CCTCTTTCTCCAGAAATTTCGTTTG 58.854 40.000 12.42 5.82 42.44 2.93
755 756 5.241728 CCCTCTTTCTCCAGAAATTTCGTTT 59.758 40.000 12.42 0.00 42.44 3.60
767 768 1.198759 CGGTTCCCCCTCTTTCTCCA 61.199 60.000 0.00 0.00 0.00 3.86
791 792 1.005340 TTGCCTTTTGCTGTTTTGCG 58.995 45.000 0.00 0.00 42.00 4.85
813 814 3.877508 CTGTTCTCTTTTTCCGACCTGTT 59.122 43.478 0.00 0.00 0.00 3.16
830 831 7.011389 CCATTTCTTTCCTTTTGGTTTCTGTTC 59.989 37.037 0.00 0.00 41.38 3.18
839 840 3.557686 CCTGCCCATTTCTTTCCTTTTGG 60.558 47.826 0.00 0.00 42.21 3.28
849 850 1.284841 CCCTCCTCCTGCCCATTTCT 61.285 60.000 0.00 0.00 0.00 2.52
854 855 2.285668 CTTCCCTCCTCCTGCCCA 60.286 66.667 0.00 0.00 0.00 5.36
855 856 3.093172 CCTTCCCTCCTCCTGCCC 61.093 72.222 0.00 0.00 0.00 5.36
858 859 0.911525 TGCTTCCTTCCCTCCTCCTG 60.912 60.000 0.00 0.00 0.00 3.86
881 888 7.028361 CCCTCTCGATCGGTTTAGTATATTTC 58.972 42.308 16.41 0.00 0.00 2.17
1363 1372 2.742372 CTTGGCGACGGACCCTTG 60.742 66.667 0.00 0.00 0.00 3.61
1433 1442 1.241315 GGTTGTGATTGTGGGACCCG 61.241 60.000 5.91 0.00 0.00 5.28
1479 1488 3.434319 CATGCCTCCGTGCGCTTT 61.434 61.111 9.73 0.00 0.00 3.51
1609 1618 3.288308 CTCCGTTCTCTGCTGCCGT 62.288 63.158 0.00 0.00 0.00 5.68
1811 1820 2.391616 CTGCAAGCAGGTGATCACTA 57.608 50.000 24.50 2.07 40.17 2.74
1827 1838 3.381590 GGGGGAAAAGAATCATGTACTGC 59.618 47.826 0.00 0.00 0.00 4.40
1844 1855 0.254747 CCGAAGTAAATGCAGGGGGA 59.745 55.000 0.00 0.00 0.00 4.81
1910 1925 5.180492 CCATGGTAACTGCTTCGTTAAAAGA 59.820 40.000 2.57 0.00 31.73 2.52
1999 2018 2.224066 GGAATGTAGGATGCTACGCAGT 60.224 50.000 18.21 2.45 43.65 4.40
2000 2019 2.036475 AGGAATGTAGGATGCTACGCAG 59.964 50.000 18.21 0.00 43.65 5.18
2001 2020 2.035961 GAGGAATGTAGGATGCTACGCA 59.964 50.000 18.21 3.64 44.86 5.24
2002 2021 2.297597 AGAGGAATGTAGGATGCTACGC 59.702 50.000 18.21 10.60 32.80 4.42
2003 2022 5.906113 ATAGAGGAATGTAGGATGCTACG 57.094 43.478 18.21 0.00 32.80 3.51
2073 2093 1.071699 AGAGTAATTGGCACGGTGTGT 59.928 47.619 10.24 0.00 35.75 3.72
2074 2094 1.808411 AGAGTAATTGGCACGGTGTG 58.192 50.000 10.24 0.00 36.51 3.82
2075 2095 2.151202 CAAGAGTAATTGGCACGGTGT 58.849 47.619 10.24 0.00 0.00 4.16
2076 2096 1.468520 CCAAGAGTAATTGGCACGGTG 59.531 52.381 3.15 3.15 43.12 4.94
2140 2160 2.964174 TTGCTGAGCAATTGCCCG 59.036 55.556 26.45 15.61 43.99 6.13
2193 2213 4.616181 CTTCCAAAAGCCAGTATAACGG 57.384 45.455 0.00 0.00 0.00 4.44
2250 3647 7.670364 CAATTGGGAAGAACAGAGGTTATTTT 58.330 34.615 0.00 0.00 38.47 1.82
2319 3716 2.279741 GATTGCACGATTGAGTAGGCA 58.720 47.619 0.00 0.00 0.00 4.75
2333 3730 0.462581 GATCTCACCCAGCGATTGCA 60.463 55.000 7.90 0.00 46.23 4.08
2697 4094 4.502777 GGGAAAGGGATGAACCGTATCTAC 60.503 50.000 0.00 0.00 40.11 2.59
2771 4186 3.802139 TCGATCGTATGATTTCTGGCAAC 59.198 43.478 15.94 0.00 34.09 4.17
2806 4221 1.201429 AGGTCAGGCCCGAGAACAAT 61.201 55.000 0.00 0.00 38.26 2.71
2817 4232 1.244697 TGACGAGTCAGAGGTCAGGC 61.245 60.000 1.24 0.00 35.89 4.85
2884 4300 7.279536 AGCACAATGACTATTCTACTTGACATG 59.720 37.037 0.00 0.00 0.00 3.21
2946 4362 9.775854 TCACTACGCTCTTATATTAGTCTTAGT 57.224 33.333 0.00 0.00 0.00 2.24
2949 4365 9.509956 AGATCACTACGCTCTTATATTAGTCTT 57.490 33.333 0.00 0.00 0.00 3.01
3171 4589 0.323178 ACTCCATTTGGCTCAGCAGG 60.323 55.000 0.00 0.00 34.44 4.85
3252 4670 2.661566 CGACTGTGTCAAGCGGCTG 61.662 63.158 1.81 0.00 32.09 4.85
3351 4769 2.202676 GACTGGAGCGCCTTCTCG 60.203 66.667 8.34 0.00 33.98 4.04
3450 4868 1.669440 GTACGAGGTGAACAGCCCA 59.331 57.895 0.00 0.00 0.00 5.36
3633 5051 4.208632 CGCATCCTCGCCTTCTTT 57.791 55.556 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.