Multiple sequence alignment - TraesCS3B01G259400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G259400 chr3B 100.000 4890 0 0 1 4890 417367124 417372013 0.000000e+00 9031.0
1 TraesCS3B01G259400 chr3B 96.526 403 10 2 4488 4890 745227169 745227567 0.000000e+00 664.0
2 TraesCS3B01G259400 chr3A 92.051 2365 93 26 710 3018 430521525 430523850 0.000000e+00 3238.0
3 TraesCS3B01G259400 chr3A 91.094 932 64 9 3099 4018 430523848 430524772 0.000000e+00 1243.0
4 TraesCS3B01G259400 chr3A 81.070 729 113 20 2 713 460143088 460142368 4.280000e-155 558.0
5 TraesCS3B01G259400 chr3A 87.879 330 14 11 4150 4478 430524801 430525105 1.000000e-96 364.0
6 TraesCS3B01G259400 chr3D 95.985 1345 35 11 3099 4428 304032631 304031291 0.000000e+00 2167.0
7 TraesCS3B01G259400 chr3D 94.507 1329 62 7 1695 3018 304033951 304032629 0.000000e+00 2039.0
8 TraesCS3B01G259400 chr3D 93.672 964 41 10 720 1670 304035070 304034114 0.000000e+00 1424.0
9 TraesCS3B01G259400 chr3D 94.595 407 18 2 4484 4890 484289616 484290018 1.160000e-175 627.0
10 TraesCS3B01G259400 chr3D 93.182 88 6 0 4397 4484 304031294 304031207 3.970000e-26 130.0
11 TraesCS3B01G259400 chr2A 87.639 720 68 17 3 714 619839916 619839210 0.000000e+00 817.0
12 TraesCS3B01G259400 chr2A 82.364 550 91 5 11 556 551737994 551737447 1.590000e-129 473.0
13 TraesCS3B01G259400 chr2A 77.372 548 118 6 9 552 139932791 139932246 2.200000e-83 320.0
14 TraesCS3B01G259400 chr2A 75.000 724 152 24 3 714 424166381 424167087 1.710000e-79 307.0
15 TraesCS3B01G259400 chr2A 79.941 339 58 10 379 713 456099338 456099670 1.760000e-59 241.0
16 TraesCS3B01G259400 chr6B 87.133 715 71 14 3 713 308482882 308483579 0.000000e+00 791.0
17 TraesCS3B01G259400 chr6B 97.500 40 1 0 679 718 359755648 359755609 8.780000e-08 69.4
18 TraesCS3B01G259400 chr7A 96.333 409 11 2 4485 4890 713788185 713788592 0.000000e+00 669.0
19 TraesCS3B01G259400 chr2B 95.864 411 10 2 4483 4890 534705474 534705068 0.000000e+00 658.0
20 TraesCS3B01G259400 chr6D 95.366 410 12 3 4484 4890 454229754 454229349 0.000000e+00 645.0
21 TraesCS3B01G259400 chr6D 93.478 92 4 2 3010 3100 369072896 369072986 8.540000e-28 135.0
22 TraesCS3B01G259400 chr6D 87.931 116 11 3 3009 3123 191651506 191651393 3.070000e-27 134.0
23 TraesCS3B01G259400 chr1A 83.056 720 107 11 1 714 281358388 281357678 1.480000e-179 640.0
24 TraesCS3B01G259400 chr1A 75.278 720 155 16 3 714 442630939 442631643 6.110000e-84 322.0
25 TraesCS3B01G259400 chr1A 97.143 35 1 0 679 713 513251876 513251910 5.290000e-05 60.2
26 TraesCS3B01G259400 chr5D 94.866 409 12 4 4487 4890 423181437 423181033 8.930000e-177 630.0
27 TraesCS3B01G259400 chr5D 94.647 411 14 3 4483 4890 532806401 532806806 8.930000e-177 630.0
28 TraesCS3B01G259400 chr5D 93.548 93 6 0 3008 3100 384413487 384413579 6.600000e-29 139.0
29 TraesCS3B01G259400 chr4B 94.349 407 18 3 4485 4890 133615007 133614605 1.930000e-173 619.0
30 TraesCS3B01G259400 chr2D 92.269 401 25 3 4483 4880 235597828 235597431 9.190000e-157 564.0
31 TraesCS3B01G259400 chr2D 96.552 87 3 0 3014 3100 270850255 270850341 1.420000e-30 145.0
32 TraesCS3B01G259400 chr2D 96.512 86 3 0 3016 3101 636386031 636385946 5.100000e-30 143.0
33 TraesCS3B01G259400 chr7D 80.140 715 115 21 11 711 587244055 587243354 4.370000e-140 508.0
34 TraesCS3B01G259400 chr7D 95.506 89 4 0 3013 3101 426558986 426558898 5.100000e-30 143.0
35 TraesCS3B01G259400 chr5B 90.228 307 15 4 369 674 502590160 502590452 2.130000e-103 387.0
36 TraesCS3B01G259400 chr5B 97.727 44 1 0 670 713 502633755 502633798 5.250000e-10 76.8
37 TraesCS3B01G259400 chr4D 96.512 86 3 0 3015 3100 434161699 434161614 5.100000e-30 143.0
38 TraesCS3B01G259400 chr7B 93.617 94 6 0 3016 3109 718351011 718351104 1.840000e-29 141.0
39 TraesCS3B01G259400 chr1D 87.611 113 12 2 3009 3120 115989916 115990027 3.970000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G259400 chr3B 417367124 417372013 4889 False 9031 9031 100.000000 1 4890 1 chr3B.!!$F1 4889
1 TraesCS3B01G259400 chr3A 430521525 430525105 3580 False 1615 3238 90.341333 710 4478 3 chr3A.!!$F1 3768
2 TraesCS3B01G259400 chr3A 460142368 460143088 720 True 558 558 81.070000 2 713 1 chr3A.!!$R1 711
3 TraesCS3B01G259400 chr3D 304031207 304035070 3863 True 1440 2167 94.336500 720 4484 4 chr3D.!!$R1 3764
4 TraesCS3B01G259400 chr2A 619839210 619839916 706 True 817 817 87.639000 3 714 1 chr2A.!!$R3 711
5 TraesCS3B01G259400 chr2A 551737447 551737994 547 True 473 473 82.364000 11 556 1 chr2A.!!$R2 545
6 TraesCS3B01G259400 chr2A 139932246 139932791 545 True 320 320 77.372000 9 552 1 chr2A.!!$R1 543
7 TraesCS3B01G259400 chr2A 424166381 424167087 706 False 307 307 75.000000 3 714 1 chr2A.!!$F1 711
8 TraesCS3B01G259400 chr6B 308482882 308483579 697 False 791 791 87.133000 3 713 1 chr6B.!!$F1 710
9 TraesCS3B01G259400 chr1A 281357678 281358388 710 True 640 640 83.056000 1 714 1 chr1A.!!$R1 713
10 TraesCS3B01G259400 chr1A 442630939 442631643 704 False 322 322 75.278000 3 714 1 chr1A.!!$F1 711
11 TraesCS3B01G259400 chr7D 587243354 587244055 701 True 508 508 80.140000 11 711 1 chr7D.!!$R2 700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
844 896 0.106419 TCCCACGAGCAAGGGTTTTT 60.106 50.0 0.00 0.0 45.64 1.94 F
1007 1076 0.179000 AGACGATCCAAGATGGGTGC 59.821 55.0 0.00 0.0 38.32 5.01 F
1408 1479 0.540365 CTGTGGTGGCAATTGGTCCT 60.540 55.0 7.72 0.0 0.00 3.85 F
2262 2495 0.674895 GTCAGCCATCGAGTTTGCCT 60.675 55.0 0.00 0.0 0.00 4.75 F
3034 3275 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.0 0.00 0.0 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1858 2078 0.911769 TCAGGCACCCCTTCATGTAG 59.088 55.000 0.00 0.0 40.33 2.74 R
2264 2497 2.173569 AGAAGCAACCTTGAGGACAACT 59.826 45.455 3.59 0.0 38.94 3.16 R
3016 3257 0.042131 TATTGTGGGACGGAGGGAGT 59.958 55.000 0.00 0.0 0.00 3.85 R
3082 3323 0.186873 GGTACTCCCTCCGTCCCATA 59.813 60.000 0.00 0.0 0.00 2.74 R
4780 5078 0.030297 AGCTCACCCCTCTCATGGAT 60.030 55.000 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
253 255 1.102154 CGATCTGGAGCAGTCTGTCT 58.898 55.000 0.93 0.00 32.61 3.41
256 258 3.129462 CGATCTGGAGCAGTCTGTCTTTA 59.871 47.826 0.93 0.00 32.61 1.85
278 280 2.839098 CAGGTTGTGAGGCCCTGT 59.161 61.111 0.00 0.00 40.72 4.00
330 333 1.429148 GCCGTCGGGTCATGAACATC 61.429 60.000 13.90 1.12 34.97 3.06
373 376 1.559219 TCGGAAAGGGCATCAGATCAA 59.441 47.619 0.00 0.00 0.00 2.57
384 387 4.648917 CATCAGATCAATGACGATGCTC 57.351 45.455 0.00 0.00 30.46 4.26
427 431 1.947146 CGGACGACTGCACGTTCAA 60.947 57.895 8.66 0.00 46.52 2.69
469 473 0.955428 GACGTTCTGCAGGCCATCAA 60.955 55.000 15.13 0.00 0.00 2.57
528 532 0.179043 TTTGCTGCACCCGTTCACTA 60.179 50.000 0.00 0.00 0.00 2.74
541 545 1.555075 GTTCACTATGCCACCAGAGGA 59.445 52.381 0.00 0.00 34.63 3.71
552 556 2.119886 CCAGAGGAGATCGGGTGAC 58.880 63.158 0.00 0.00 38.38 3.67
564 568 2.914379 GGGTGACGACCAGTTTCTG 58.086 57.895 0.00 0.00 45.25 3.02
569 574 0.249911 GACGACCAGTTTCTGCACCT 60.250 55.000 0.00 0.00 0.00 4.00
590 623 3.655276 TTTTGTCGTAGTCCTGTCTCC 57.345 47.619 0.00 0.00 0.00 3.71
594 627 3.228453 TGTCGTAGTCCTGTCTCCTTTT 58.772 45.455 0.00 0.00 0.00 2.27
598 631 6.014840 TGTCGTAGTCCTGTCTCCTTTTTATT 60.015 38.462 0.00 0.00 0.00 1.40
602 635 9.211485 CGTAGTCCTGTCTCCTTTTTATTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
644 682 2.118679 TCCTAGGATCACCACCATGTG 58.881 52.381 7.62 0.00 38.94 3.21
664 707 3.853671 GTGCTTTGTTATCCATTGCTTCG 59.146 43.478 0.00 0.00 0.00 3.79
791 834 6.425504 CATCAGATTAAAGCAAGAATCGGAC 58.574 40.000 8.64 0.00 38.50 4.79
844 896 0.106419 TCCCACGAGCAAGGGTTTTT 60.106 50.000 0.00 0.00 45.64 1.94
933 1001 2.049985 GACGGCGGATCTCCATCG 60.050 66.667 13.24 6.65 37.19 3.84
950 1019 3.062639 CCATCGATTCCTTGTGTTCTTCG 59.937 47.826 0.00 0.00 0.00 3.79
1007 1076 0.179000 AGACGATCCAAGATGGGTGC 59.821 55.000 0.00 0.00 38.32 5.01
1008 1077 0.815615 GACGATCCAAGATGGGTGCC 60.816 60.000 0.00 0.00 38.32 5.01
1324 1393 6.926826 TCAGAACGAATGTGTACAAGTATGTT 59.073 34.615 0.00 0.13 41.05 2.71
1325 1394 7.115805 TCAGAACGAATGTGTACAAGTATGTTC 59.884 37.037 17.23 17.23 41.05 3.18
1326 1395 6.926826 AGAACGAATGTGTACAAGTATGTTCA 59.073 34.615 22.68 7.40 41.05 3.18
1341 1410 6.012745 AGTATGTTCAGAAGCCCAAAGAATT 58.987 36.000 0.00 0.00 0.00 2.17
1342 1411 7.175104 AGTATGTTCAGAAGCCCAAAGAATTA 58.825 34.615 0.00 0.00 0.00 1.40
1386 1457 7.282675 TGGATTTGTGCTGAATTGAATTTGTTT 59.717 29.630 0.00 0.00 0.00 2.83
1408 1479 0.540365 CTGTGGTGGCAATTGGTCCT 60.540 55.000 7.72 0.00 0.00 3.85
1566 1647 0.904865 TGTCTCCACCGAGCATTCCT 60.905 55.000 0.00 0.00 35.94 3.36
1582 1663 4.460731 GCATTCCTTTAGCTCTCCAACTTT 59.539 41.667 0.00 0.00 0.00 2.66
1583 1664 5.648092 GCATTCCTTTAGCTCTCCAACTTTA 59.352 40.000 0.00 0.00 0.00 1.85
1721 1940 9.740239 CATAAACCAGGATGATAAGAAAACATG 57.260 33.333 0.00 0.00 39.69 3.21
1743 1963 4.638421 TGGGCTACGAAGGACAATTATTTG 59.362 41.667 0.00 0.00 38.86 2.32
1766 1986 5.874810 TGGTTGCTAGAAAATACTGTAGCAG 59.125 40.000 0.00 0.00 40.89 4.24
1768 1988 6.036191 GGTTGCTAGAAAATACTGTAGCAGTC 59.964 42.308 4.95 2.30 41.21 3.51
1829 2049 2.097825 GCCCTTCATGATTCACTTGCT 58.902 47.619 0.00 0.00 0.00 3.91
1858 2078 7.494211 ACCTATGTTTTGGTTGAAGGTTAAAC 58.506 34.615 0.00 0.00 31.95 2.01
2125 2358 7.122650 TCCTGCCTATCAAAAGGTTCTTTATTG 59.877 37.037 0.00 0.00 39.02 1.90
2179 2412 6.472808 GGACTATTTAGTAACTCTCGCTTGTG 59.527 42.308 0.00 0.00 36.50 3.33
2262 2495 0.674895 GTCAGCCATCGAGTTTGCCT 60.675 55.000 0.00 0.00 0.00 4.75
2264 2497 1.277842 TCAGCCATCGAGTTTGCCTTA 59.722 47.619 0.00 0.00 0.00 2.69
2293 2526 3.744660 TCAAGGTTGCTTCTTCCTTCTC 58.255 45.455 0.00 0.00 39.22 2.87
2299 2532 4.528504 GTTGCTTCTTCCTTCTCGTTTTC 58.471 43.478 0.00 0.00 0.00 2.29
2304 2537 6.073222 TGCTTCTTCCTTCTCGTTTTCAATAC 60.073 38.462 0.00 0.00 0.00 1.89
2357 2590 7.097192 TCAGGAATACAACTGTCTCATACAAC 58.903 38.462 0.00 0.00 37.74 3.32
2469 2702 3.006752 TGCCTTGTGCCTTCCATTTTAAG 59.993 43.478 0.00 0.00 40.16 1.85
2506 2739 8.654230 TTCTGTTTCATGTAGCATCTCTAATC 57.346 34.615 0.00 0.00 0.00 1.75
2609 2842 2.391389 GGCTCTCTTTTCACGGGCG 61.391 63.158 0.00 0.00 0.00 6.13
2710 2943 3.657015 TGTGCTCAGAGAAGAGAACTG 57.343 47.619 0.00 0.00 43.40 3.16
2779 3018 4.597079 GTTCTCTCATAGCAACTCTCGAG 58.403 47.826 5.93 5.93 0.00 4.04
2826 3065 7.073208 TCTACCCAACCATAAGTATCATCAGA 58.927 38.462 0.00 0.00 0.00 3.27
2916 3155 1.816074 TCGTTTGGAGTTGGTATGGC 58.184 50.000 0.00 0.00 0.00 4.40
3008 3249 9.410556 GCAATCAATAAACTGACATAAACTTGT 57.589 29.630 0.00 0.00 0.00 3.16
3016 3257 8.671384 AAACTGACATAAACTTGTGCTTACTA 57.329 30.769 0.00 0.00 0.00 1.82
3017 3258 7.653767 ACTGACATAAACTTGTGCTTACTAC 57.346 36.000 0.00 0.00 0.00 2.73
3018 3259 7.442656 ACTGACATAAACTTGTGCTTACTACT 58.557 34.615 0.00 0.00 0.00 2.57
3019 3260 7.599245 ACTGACATAAACTTGTGCTTACTACTC 59.401 37.037 0.00 0.00 0.00 2.59
3020 3261 6.872020 TGACATAAACTTGTGCTTACTACTCC 59.128 38.462 0.00 0.00 0.00 3.85
3021 3262 6.171213 ACATAAACTTGTGCTTACTACTCCC 58.829 40.000 0.00 0.00 0.00 4.30
3022 3263 4.976540 AAACTTGTGCTTACTACTCCCT 57.023 40.909 0.00 0.00 0.00 4.20
3023 3264 4.538746 AACTTGTGCTTACTACTCCCTC 57.461 45.455 0.00 0.00 0.00 4.30
3024 3265 2.832733 ACTTGTGCTTACTACTCCCTCC 59.167 50.000 0.00 0.00 0.00 4.30
3025 3266 1.471119 TGTGCTTACTACTCCCTCCG 58.529 55.000 0.00 0.00 0.00 4.63
3026 3267 1.272313 TGTGCTTACTACTCCCTCCGT 60.272 52.381 0.00 0.00 0.00 4.69
3027 3268 1.404748 GTGCTTACTACTCCCTCCGTC 59.595 57.143 0.00 0.00 0.00 4.79
3028 3269 1.031235 GCTTACTACTCCCTCCGTCC 58.969 60.000 0.00 0.00 0.00 4.79
3029 3270 1.689984 CTTACTACTCCCTCCGTCCC 58.310 60.000 0.00 0.00 0.00 4.46
3030 3271 1.002069 TTACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
3031 3272 0.257039 TACTACTCCCTCCGTCCCAC 59.743 60.000 0.00 0.00 0.00 4.61
3032 3273 1.000019 CTACTCCCTCCGTCCCACA 60.000 63.158 0.00 0.00 0.00 4.17
3033 3274 0.613853 CTACTCCCTCCGTCCCACAA 60.614 60.000 0.00 0.00 0.00 3.33
3034 3275 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
3035 3276 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.00 0.00 1.90
3036 3277 1.344087 ACTCCCTCCGTCCCACAATAT 60.344 52.381 0.00 0.00 0.00 1.28
3037 3278 2.090943 ACTCCCTCCGTCCCACAATATA 60.091 50.000 0.00 0.00 0.00 0.86
3038 3279 2.969950 CTCCCTCCGTCCCACAATATAA 59.030 50.000 0.00 0.00 0.00 0.98
3039 3280 2.969950 TCCCTCCGTCCCACAATATAAG 59.030 50.000 0.00 0.00 0.00 1.73
3040 3281 2.969950 CCCTCCGTCCCACAATATAAGA 59.030 50.000 0.00 0.00 0.00 2.10
3041 3282 3.006967 CCCTCCGTCCCACAATATAAGAG 59.993 52.174 0.00 0.00 0.00 2.85
3042 3283 3.555168 CCTCCGTCCCACAATATAAGAGC 60.555 52.174 0.00 0.00 0.00 4.09
3043 3284 3.305720 TCCGTCCCACAATATAAGAGCT 58.694 45.455 0.00 0.00 0.00 4.09
3044 3285 3.709653 TCCGTCCCACAATATAAGAGCTT 59.290 43.478 0.00 0.00 0.00 3.74
3045 3286 4.163458 TCCGTCCCACAATATAAGAGCTTT 59.837 41.667 0.00 0.00 0.00 3.51
3046 3287 4.881850 CCGTCCCACAATATAAGAGCTTTT 59.118 41.667 0.00 0.00 0.00 2.27
3047 3288 5.357032 CCGTCCCACAATATAAGAGCTTTTT 59.643 40.000 0.00 0.00 0.00 1.94
3073 3314 3.057734 ACTGCACTAGTGTAGAAAACGC 58.942 45.455 37.64 16.67 44.51 4.84
3075 3316 3.314553 TGCACTAGTGTAGAAAACGCTC 58.685 45.455 23.44 3.51 46.05 5.03
3076 3317 3.005472 TGCACTAGTGTAGAAAACGCTCT 59.995 43.478 23.44 0.00 46.05 4.09
3077 3318 3.988517 GCACTAGTGTAGAAAACGCTCTT 59.011 43.478 23.44 0.00 46.05 2.85
3078 3319 5.159209 GCACTAGTGTAGAAAACGCTCTTA 58.841 41.667 23.44 0.00 46.05 2.10
3079 3320 5.805994 GCACTAGTGTAGAAAACGCTCTTAT 59.194 40.000 23.44 0.00 46.05 1.73
3080 3321 6.971184 GCACTAGTGTAGAAAACGCTCTTATA 59.029 38.462 23.44 0.00 46.05 0.98
3081 3322 7.648510 GCACTAGTGTAGAAAACGCTCTTATAT 59.351 37.037 23.44 0.00 46.05 0.86
3082 3323 9.517609 CACTAGTGTAGAAAACGCTCTTATATT 57.482 33.333 15.06 0.00 46.05 1.28
3086 3327 9.477484 AGTGTAGAAAACGCTCTTATATTATGG 57.523 33.333 0.00 0.00 46.05 2.74
3087 3328 8.709646 GTGTAGAAAACGCTCTTATATTATGGG 58.290 37.037 0.00 0.00 35.62 4.00
3088 3329 8.644216 TGTAGAAAACGCTCTTATATTATGGGA 58.356 33.333 0.00 0.00 0.00 4.37
3089 3330 7.964604 AGAAAACGCTCTTATATTATGGGAC 57.035 36.000 0.00 0.00 0.00 4.46
3090 3331 6.645415 AGAAAACGCTCTTATATTATGGGACG 59.355 38.462 0.00 0.00 0.00 4.79
3091 3332 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
3092 3333 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
3093 3334 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
3094 3335 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
3095 3336 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
3096 3337 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
3097 3338 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3098 3339 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
3219 3461 2.693591 TGGCATTAGGGAACTACTCTCG 59.306 50.000 0.00 0.00 44.30 4.04
3225 3467 1.819903 AGGGAACTACTCTCGCTGAAC 59.180 52.381 0.00 0.00 40.61 3.18
3316 3558 3.895704 ACACAAGGGGTCCAAATAAGT 57.104 42.857 0.00 0.00 0.00 2.24
3354 3596 1.421646 GGATGAAGGATGGACCCGATT 59.578 52.381 0.00 0.00 40.05 3.34
3355 3597 2.158608 GGATGAAGGATGGACCCGATTT 60.159 50.000 0.00 0.00 40.05 2.17
3573 3815 1.600023 CACCGTGCTGGAAAAGGTAA 58.400 50.000 2.38 0.00 42.00 2.85
3633 3875 2.343387 GGCCAATTGTGCACCACC 59.657 61.111 15.69 2.77 32.73 4.61
3636 3878 2.049248 CAATTGTGCACCACCGGC 60.049 61.111 15.69 0.00 32.73 6.13
3658 3904 5.603395 GGCTTCCCTCTACTTACTATCCTTT 59.397 44.000 0.00 0.00 0.00 3.11
3750 4000 1.705256 CATTTCTGCATGGTGTGTGC 58.295 50.000 0.00 0.00 42.81 4.57
3767 4017 4.680237 CGCAGGAGGCCGTCAACA 62.680 66.667 0.00 0.00 40.31 3.33
4466 4764 3.058224 ACAGCAATTTACAAGCGGTTCTC 60.058 43.478 0.00 0.00 32.96 2.87
4472 4770 3.695830 TTACAAGCGGTTCTCAAGGAT 57.304 42.857 0.00 0.00 0.00 3.24
4484 4782 4.589216 TCTCAAGGATGTTTTGGCAAAG 57.411 40.909 13.04 0.00 0.00 2.77
4485 4783 3.321682 TCTCAAGGATGTTTTGGCAAAGG 59.678 43.478 13.04 0.00 0.00 3.11
4486 4784 2.368221 TCAAGGATGTTTTGGCAAAGGG 59.632 45.455 13.04 0.00 0.00 3.95
4487 4785 2.368221 CAAGGATGTTTTGGCAAAGGGA 59.632 45.455 13.04 1.64 0.00 4.20
4488 4786 2.688477 AGGATGTTTTGGCAAAGGGAA 58.312 42.857 13.04 0.00 0.00 3.97
4489 4787 3.044894 AGGATGTTTTGGCAAAGGGAAA 58.955 40.909 13.04 0.00 0.00 3.13
4490 4788 3.138304 GGATGTTTTGGCAAAGGGAAAC 58.862 45.455 13.04 8.63 33.72 2.78
4491 4789 2.301577 TGTTTTGGCAAAGGGAAACG 57.698 45.000 13.04 0.00 35.36 3.60
4492 4790 1.550976 TGTTTTGGCAAAGGGAAACGT 59.449 42.857 13.04 0.00 35.36 3.99
4493 4791 2.198406 GTTTTGGCAAAGGGAAACGTC 58.802 47.619 13.04 0.00 0.00 4.34
4494 4792 1.770294 TTTGGCAAAGGGAAACGTCT 58.230 45.000 8.93 0.00 0.00 4.18
4495 4793 2.642154 TTGGCAAAGGGAAACGTCTA 57.358 45.000 0.00 0.00 0.00 2.59
4496 4794 2.871096 TGGCAAAGGGAAACGTCTAT 57.129 45.000 0.00 0.00 0.00 1.98
4497 4795 3.985019 TGGCAAAGGGAAACGTCTATA 57.015 42.857 0.00 0.00 0.00 1.31
4498 4796 3.869065 TGGCAAAGGGAAACGTCTATAG 58.131 45.455 0.00 0.00 0.00 1.31
4499 4797 2.612672 GGCAAAGGGAAACGTCTATAGC 59.387 50.000 0.00 0.00 0.00 2.97
4500 4798 2.612672 GCAAAGGGAAACGTCTATAGCC 59.387 50.000 0.00 0.00 0.00 3.93
4501 4799 2.864343 CAAAGGGAAACGTCTATAGCCG 59.136 50.000 0.85 0.85 0.00 5.52
4502 4800 1.038280 AGGGAAACGTCTATAGCCGG 58.962 55.000 8.20 0.00 0.00 6.13
4503 4801 0.749049 GGGAAACGTCTATAGCCGGT 59.251 55.000 8.20 0.00 0.00 5.28
4504 4802 1.269465 GGGAAACGTCTATAGCCGGTC 60.269 57.143 8.20 4.56 0.00 4.79
4505 4803 1.598924 GGAAACGTCTATAGCCGGTCG 60.599 57.143 8.20 4.33 0.00 4.79
4506 4804 1.331756 GAAACGTCTATAGCCGGTCGA 59.668 52.381 8.20 0.00 0.00 4.20
4507 4805 0.659957 AACGTCTATAGCCGGTCGAC 59.340 55.000 7.13 7.13 0.00 4.20
4508 4806 1.162800 ACGTCTATAGCCGGTCGACC 61.163 60.000 25.28 25.28 0.00 4.79
4547 4845 4.947278 CCTCGCTCGCGTCGCTAG 62.947 72.222 16.36 15.10 40.74 3.42
4548 4846 4.947278 CTCGCTCGCGTCGCTAGG 62.947 72.222 19.04 10.09 40.74 3.02
4556 4854 4.880537 CGTCGCTAGGCAGCCCAG 62.881 72.222 8.22 4.80 45.64 4.45
4557 4855 4.537433 GTCGCTAGGCAGCCCAGG 62.537 72.222 8.22 0.00 45.64 4.45
4569 4867 4.994756 CCCAGGCCCACCAACCAC 62.995 72.222 0.00 0.00 39.06 4.16
4570 4868 4.217210 CCAGGCCCACCAACCACA 62.217 66.667 0.00 0.00 39.06 4.17
4571 4869 2.598394 CAGGCCCACCAACCACAG 60.598 66.667 0.00 0.00 39.06 3.66
4572 4870 2.776526 AGGCCCACCAACCACAGA 60.777 61.111 0.00 0.00 39.06 3.41
4573 4871 2.197324 GGCCCACCAACCACAGAA 59.803 61.111 0.00 0.00 35.26 3.02
4574 4872 2.200337 GGCCCACCAACCACAGAAC 61.200 63.158 0.00 0.00 35.26 3.01
4575 4873 1.152756 GCCCACCAACCACAGAACT 60.153 57.895 0.00 0.00 0.00 3.01
4576 4874 0.755327 GCCCACCAACCACAGAACTT 60.755 55.000 0.00 0.00 0.00 2.66
4577 4875 1.477923 GCCCACCAACCACAGAACTTA 60.478 52.381 0.00 0.00 0.00 2.24
4578 4876 2.817839 GCCCACCAACCACAGAACTTAT 60.818 50.000 0.00 0.00 0.00 1.73
4579 4877 3.081804 CCCACCAACCACAGAACTTATC 58.918 50.000 0.00 0.00 0.00 1.75
4580 4878 3.244911 CCCACCAACCACAGAACTTATCT 60.245 47.826 0.00 0.00 39.68 1.98
4581 4879 4.003648 CCACCAACCACAGAACTTATCTC 58.996 47.826 0.00 0.00 35.73 2.75
4582 4880 4.263068 CCACCAACCACAGAACTTATCTCT 60.263 45.833 0.00 0.00 35.73 3.10
4583 4881 5.046591 CCACCAACCACAGAACTTATCTCTA 60.047 44.000 0.00 0.00 35.73 2.43
4584 4882 6.464222 CACCAACCACAGAACTTATCTCTAA 58.536 40.000 0.00 0.00 35.73 2.10
4585 4883 6.369065 CACCAACCACAGAACTTATCTCTAAC 59.631 42.308 0.00 0.00 35.73 2.34
4586 4884 5.875359 CCAACCACAGAACTTATCTCTAACC 59.125 44.000 0.00 0.00 35.73 2.85
4587 4885 5.678955 ACCACAGAACTTATCTCTAACCC 57.321 43.478 0.00 0.00 35.73 4.11
4588 4886 4.470304 ACCACAGAACTTATCTCTAACCCC 59.530 45.833 0.00 0.00 35.73 4.95
4589 4887 4.469945 CCACAGAACTTATCTCTAACCCCA 59.530 45.833 0.00 0.00 35.73 4.96
4590 4888 5.420409 CACAGAACTTATCTCTAACCCCAC 58.580 45.833 0.00 0.00 35.73 4.61
4591 4889 4.470304 ACAGAACTTATCTCTAACCCCACC 59.530 45.833 0.00 0.00 35.73 4.61
4592 4890 4.469945 CAGAACTTATCTCTAACCCCACCA 59.530 45.833 0.00 0.00 35.73 4.17
4593 4891 4.470304 AGAACTTATCTCTAACCCCACCAC 59.530 45.833 0.00 0.00 30.46 4.16
4594 4892 4.076175 ACTTATCTCTAACCCCACCACT 57.924 45.455 0.00 0.00 0.00 4.00
4595 4893 4.436079 ACTTATCTCTAACCCCACCACTT 58.564 43.478 0.00 0.00 0.00 3.16
4596 4894 4.470304 ACTTATCTCTAACCCCACCACTTC 59.530 45.833 0.00 0.00 0.00 3.01
4597 4895 1.652947 TCTCTAACCCCACCACTTCC 58.347 55.000 0.00 0.00 0.00 3.46
4598 4896 1.132657 TCTCTAACCCCACCACTTCCA 60.133 52.381 0.00 0.00 0.00 3.53
4599 4897 1.916181 CTCTAACCCCACCACTTCCAT 59.084 52.381 0.00 0.00 0.00 3.41
4600 4898 1.913419 TCTAACCCCACCACTTCCATC 59.087 52.381 0.00 0.00 0.00 3.51
4601 4899 1.916181 CTAACCCCACCACTTCCATCT 59.084 52.381 0.00 0.00 0.00 2.90
4602 4900 1.158007 AACCCCACCACTTCCATCTT 58.842 50.000 0.00 0.00 0.00 2.40
4603 4901 2.053747 ACCCCACCACTTCCATCTTA 57.946 50.000 0.00 0.00 0.00 2.10
4604 4902 2.573463 ACCCCACCACTTCCATCTTAT 58.427 47.619 0.00 0.00 0.00 1.73
4605 4903 2.509964 ACCCCACCACTTCCATCTTATC 59.490 50.000 0.00 0.00 0.00 1.75
4606 4904 2.158608 CCCCACCACTTCCATCTTATCC 60.159 54.545 0.00 0.00 0.00 2.59
4607 4905 2.158608 CCCACCACTTCCATCTTATCCC 60.159 54.545 0.00 0.00 0.00 3.85
4608 4906 2.158608 CCACCACTTCCATCTTATCCCC 60.159 54.545 0.00 0.00 0.00 4.81
4609 4907 2.780010 CACCACTTCCATCTTATCCCCT 59.220 50.000 0.00 0.00 0.00 4.79
4610 4908 3.049344 ACCACTTCCATCTTATCCCCTC 58.951 50.000 0.00 0.00 0.00 4.30
4611 4909 2.037772 CCACTTCCATCTTATCCCCTCG 59.962 54.545 0.00 0.00 0.00 4.63
4612 4910 1.694696 ACTTCCATCTTATCCCCTCGC 59.305 52.381 0.00 0.00 0.00 5.03
4613 4911 1.974236 CTTCCATCTTATCCCCTCGCT 59.026 52.381 0.00 0.00 0.00 4.93
4614 4912 1.633774 TCCATCTTATCCCCTCGCTC 58.366 55.000 0.00 0.00 0.00 5.03
4615 4913 1.148027 TCCATCTTATCCCCTCGCTCT 59.852 52.381 0.00 0.00 0.00 4.09
4616 4914 1.974236 CCATCTTATCCCCTCGCTCTT 59.026 52.381 0.00 0.00 0.00 2.85
4617 4915 2.370189 CCATCTTATCCCCTCGCTCTTT 59.630 50.000 0.00 0.00 0.00 2.52
4618 4916 3.556004 CCATCTTATCCCCTCGCTCTTTC 60.556 52.174 0.00 0.00 0.00 2.62
4619 4917 3.033659 TCTTATCCCCTCGCTCTTTCT 57.966 47.619 0.00 0.00 0.00 2.52
4620 4918 2.695666 TCTTATCCCCTCGCTCTTTCTG 59.304 50.000 0.00 0.00 0.00 3.02
4621 4919 1.414158 TATCCCCTCGCTCTTTCTGG 58.586 55.000 0.00 0.00 0.00 3.86
4622 4920 0.325671 ATCCCCTCGCTCTTTCTGGA 60.326 55.000 0.00 0.00 0.00 3.86
4623 4921 0.972983 TCCCCTCGCTCTTTCTGGAG 60.973 60.000 0.00 0.00 36.50 3.86
4624 4922 0.972983 CCCCTCGCTCTTTCTGGAGA 60.973 60.000 0.00 0.00 35.52 3.71
4625 4923 0.174617 CCCTCGCTCTTTCTGGAGAC 59.825 60.000 0.00 0.00 35.52 3.36
4626 4924 0.174617 CCTCGCTCTTTCTGGAGACC 59.825 60.000 0.00 0.00 35.52 3.85
4627 4925 0.891373 CTCGCTCTTTCTGGAGACCA 59.109 55.000 0.00 0.00 35.52 4.02
4628 4926 0.603569 TCGCTCTTTCTGGAGACCAC 59.396 55.000 0.00 0.00 35.52 4.16
4629 4927 0.318441 CGCTCTTTCTGGAGACCACA 59.682 55.000 0.00 0.00 35.52 4.17
4630 4928 1.802069 GCTCTTTCTGGAGACCACAC 58.198 55.000 0.00 0.00 35.52 3.82
4631 4929 1.937108 GCTCTTTCTGGAGACCACACG 60.937 57.143 0.00 0.00 35.52 4.49
4632 4930 1.613925 CTCTTTCTGGAGACCACACGA 59.386 52.381 0.00 0.00 35.52 4.35
4633 4931 1.613925 TCTTTCTGGAGACCACACGAG 59.386 52.381 0.00 0.00 0.00 4.18
4634 4932 0.679505 TTTCTGGAGACCACACGAGG 59.320 55.000 0.00 0.00 0.00 4.63
4635 4933 1.816863 TTCTGGAGACCACACGAGGC 61.817 60.000 0.00 0.00 0.00 4.70
4636 4934 2.523168 TGGAGACCACACGAGGCA 60.523 61.111 0.00 0.00 0.00 4.75
4637 4935 1.892819 CTGGAGACCACACGAGGCAT 61.893 60.000 0.00 0.00 0.00 4.40
4638 4936 1.153549 GGAGACCACACGAGGCATC 60.154 63.158 0.00 0.00 0.00 3.91
4639 4937 1.153549 GAGACCACACGAGGCATCC 60.154 63.158 0.00 0.00 0.00 3.51
4640 4938 1.608717 GAGACCACACGAGGCATCCT 61.609 60.000 0.00 0.00 36.03 3.24
4641 4939 1.153549 GACCACACGAGGCATCCTC 60.154 63.158 2.83 2.83 46.44 3.71
4648 4946 2.107953 GAGGCATCCTCGTCCTGC 59.892 66.667 0.00 0.00 41.08 4.85
4649 4947 2.364842 AGGCATCCTCGTCCTGCT 60.365 61.111 0.00 0.00 36.18 4.24
4650 4948 2.107953 GGCATCCTCGTCCTGCTC 59.892 66.667 0.00 0.00 36.18 4.26
4651 4949 2.279120 GCATCCTCGTCCTGCTCG 60.279 66.667 0.00 0.00 33.15 5.03
4652 4950 2.279120 CATCCTCGTCCTGCTCGC 60.279 66.667 0.00 0.00 0.00 5.03
4653 4951 3.532155 ATCCTCGTCCTGCTCGCC 61.532 66.667 0.00 0.00 0.00 5.54
4656 4954 3.764466 CTCGTCCTGCTCGCCCTT 61.764 66.667 0.00 0.00 0.00 3.95
4657 4955 3.708220 CTCGTCCTGCTCGCCCTTC 62.708 68.421 0.00 0.00 0.00 3.46
4658 4956 4.069232 CGTCCTGCTCGCCCTTCA 62.069 66.667 0.00 0.00 0.00 3.02
4659 4957 2.125350 GTCCTGCTCGCCCTTCAG 60.125 66.667 0.00 0.00 0.00 3.02
4660 4958 2.604686 TCCTGCTCGCCCTTCAGT 60.605 61.111 0.00 0.00 0.00 3.41
4661 4959 2.125350 CCTGCTCGCCCTTCAGTC 60.125 66.667 0.00 0.00 0.00 3.51
4662 4960 2.125350 CTGCTCGCCCTTCAGTCC 60.125 66.667 0.00 0.00 0.00 3.85
4663 4961 2.604686 TGCTCGCCCTTCAGTCCT 60.605 61.111 0.00 0.00 0.00 3.85
4664 4962 2.185608 GCTCGCCCTTCAGTCCTC 59.814 66.667 0.00 0.00 0.00 3.71
4665 4963 2.492090 CTCGCCCTTCAGTCCTCG 59.508 66.667 0.00 0.00 0.00 4.63
4666 4964 2.035155 TCGCCCTTCAGTCCTCGA 59.965 61.111 0.00 0.00 0.00 4.04
4667 4965 1.999071 CTCGCCCTTCAGTCCTCGAG 61.999 65.000 5.13 5.13 37.65 4.04
4668 4966 2.344203 CGCCCTTCAGTCCTCGAGT 61.344 63.158 12.31 0.00 0.00 4.18
4669 4967 1.878656 CGCCCTTCAGTCCTCGAGTT 61.879 60.000 12.31 0.00 0.00 3.01
4670 4968 0.108567 GCCCTTCAGTCCTCGAGTTC 60.109 60.000 12.31 3.83 0.00 3.01
4671 4969 1.551452 CCCTTCAGTCCTCGAGTTCT 58.449 55.000 12.31 6.24 0.00 3.01
4672 4970 1.474879 CCCTTCAGTCCTCGAGTTCTC 59.525 57.143 12.31 0.00 0.00 2.87
4673 4971 2.163509 CCTTCAGTCCTCGAGTTCTCA 58.836 52.381 12.31 0.00 0.00 3.27
4674 4972 2.558795 CCTTCAGTCCTCGAGTTCTCAA 59.441 50.000 12.31 1.16 0.00 3.02
4675 4973 3.194542 CCTTCAGTCCTCGAGTTCTCAAT 59.805 47.826 12.31 0.00 0.00 2.57
4676 4974 4.420168 CTTCAGTCCTCGAGTTCTCAATC 58.580 47.826 12.31 0.00 0.00 2.67
4677 4975 3.691575 TCAGTCCTCGAGTTCTCAATCT 58.308 45.455 12.31 0.00 0.00 2.40
4678 4976 3.692101 TCAGTCCTCGAGTTCTCAATCTC 59.308 47.826 12.31 0.00 0.00 2.75
4679 4977 3.694072 CAGTCCTCGAGTTCTCAATCTCT 59.306 47.826 12.31 0.00 0.00 3.10
4680 4978 3.945285 AGTCCTCGAGTTCTCAATCTCTC 59.055 47.826 12.31 0.00 0.00 3.20
4681 4979 3.066203 GTCCTCGAGTTCTCAATCTCTCC 59.934 52.174 12.31 0.00 0.00 3.71
4682 4980 3.053991 TCCTCGAGTTCTCAATCTCTCCT 60.054 47.826 12.31 0.00 0.00 3.69
4683 4981 3.315191 CCTCGAGTTCTCAATCTCTCCTC 59.685 52.174 12.31 0.00 0.00 3.71
4684 4982 3.283751 TCGAGTTCTCAATCTCTCCTCC 58.716 50.000 0.79 0.00 0.00 4.30
4685 4983 3.053991 TCGAGTTCTCAATCTCTCCTCCT 60.054 47.826 0.79 0.00 0.00 3.69
4686 4984 3.699038 CGAGTTCTCAATCTCTCCTCCTT 59.301 47.826 0.79 0.00 0.00 3.36
4687 4985 4.202010 CGAGTTCTCAATCTCTCCTCCTTC 60.202 50.000 0.79 0.00 0.00 3.46
4688 4986 4.030216 AGTTCTCAATCTCTCCTCCTTCC 58.970 47.826 0.00 0.00 0.00 3.46
4689 4987 4.030216 GTTCTCAATCTCTCCTCCTTCCT 58.970 47.826 0.00 0.00 0.00 3.36
4690 4988 3.641046 TCTCAATCTCTCCTCCTTCCTG 58.359 50.000 0.00 0.00 0.00 3.86
4691 4989 3.012274 TCTCAATCTCTCCTCCTTCCTGT 59.988 47.826 0.00 0.00 0.00 4.00
4692 4990 3.102972 TCAATCTCTCCTCCTTCCTGTG 58.897 50.000 0.00 0.00 0.00 3.66
4693 4991 2.836981 CAATCTCTCCTCCTTCCTGTGT 59.163 50.000 0.00 0.00 0.00 3.72
4694 4992 2.704190 TCTCTCCTCCTTCCTGTGTT 57.296 50.000 0.00 0.00 0.00 3.32
4695 4993 2.530701 TCTCTCCTCCTTCCTGTGTTC 58.469 52.381 0.00 0.00 0.00 3.18
4696 4994 2.110899 TCTCTCCTCCTTCCTGTGTTCT 59.889 50.000 0.00 0.00 0.00 3.01
4697 4995 2.495669 CTCTCCTCCTTCCTGTGTTCTC 59.504 54.545 0.00 0.00 0.00 2.87
4698 4996 2.158310 TCTCCTCCTTCCTGTGTTCTCA 60.158 50.000 0.00 0.00 0.00 3.27
4699 4997 1.971357 TCCTCCTTCCTGTGTTCTCAC 59.029 52.381 0.00 0.00 44.08 3.51
4700 4998 1.002544 CCTCCTTCCTGTGTTCTCACC 59.997 57.143 0.00 0.00 43.26 4.02
4701 4999 1.694150 CTCCTTCCTGTGTTCTCACCA 59.306 52.381 0.00 0.00 43.26 4.17
4702 5000 2.104792 CTCCTTCCTGTGTTCTCACCAA 59.895 50.000 0.00 0.00 43.26 3.67
4703 5001 2.507886 TCCTTCCTGTGTTCTCACCAAA 59.492 45.455 0.00 0.00 43.26 3.28
4704 5002 3.053991 TCCTTCCTGTGTTCTCACCAAAA 60.054 43.478 0.00 0.00 43.26 2.44
4705 5003 3.891366 CCTTCCTGTGTTCTCACCAAAAT 59.109 43.478 0.00 0.00 43.26 1.82
4706 5004 5.070001 CCTTCCTGTGTTCTCACCAAAATA 58.930 41.667 0.00 0.00 43.26 1.40
4707 5005 5.048713 CCTTCCTGTGTTCTCACCAAAATAC 60.049 44.000 0.00 0.00 43.26 1.89
4708 5006 5.042463 TCCTGTGTTCTCACCAAAATACA 57.958 39.130 0.00 0.00 43.26 2.29
4709 5007 4.819630 TCCTGTGTTCTCACCAAAATACAC 59.180 41.667 0.00 0.00 43.26 2.90
4710 5008 4.578516 CCTGTGTTCTCACCAAAATACACA 59.421 41.667 0.00 0.00 43.26 3.72
4711 5009 5.493133 TGTGTTCTCACCAAAATACACAC 57.507 39.130 0.00 0.00 43.26 3.82
4712 5010 4.336993 TGTGTTCTCACCAAAATACACACC 59.663 41.667 0.00 0.00 43.26 4.16
4713 5011 4.578928 GTGTTCTCACCAAAATACACACCT 59.421 41.667 0.00 0.00 38.51 4.00
4714 5012 5.761234 GTGTTCTCACCAAAATACACACCTA 59.239 40.000 0.00 0.00 38.51 3.08
4715 5013 6.261381 GTGTTCTCACCAAAATACACACCTAA 59.739 38.462 0.00 0.00 38.51 2.69
4716 5014 7.001674 TGTTCTCACCAAAATACACACCTAAT 58.998 34.615 0.00 0.00 0.00 1.73
4717 5015 7.174253 TGTTCTCACCAAAATACACACCTAATC 59.826 37.037 0.00 0.00 0.00 1.75
4718 5016 6.177610 TCTCACCAAAATACACACCTAATCC 58.822 40.000 0.00 0.00 0.00 3.01
4719 5017 5.258051 TCACCAAAATACACACCTAATCCC 58.742 41.667 0.00 0.00 0.00 3.85
4720 5018 4.401202 CACCAAAATACACACCTAATCCCC 59.599 45.833 0.00 0.00 0.00 4.81
4721 5019 4.044825 ACCAAAATACACACCTAATCCCCA 59.955 41.667 0.00 0.00 0.00 4.96
4722 5020 5.208121 CCAAAATACACACCTAATCCCCAT 58.792 41.667 0.00 0.00 0.00 4.00
4723 5021 5.068987 CCAAAATACACACCTAATCCCCATG 59.931 44.000 0.00 0.00 0.00 3.66
4724 5022 5.725551 AAATACACACCTAATCCCCATGA 57.274 39.130 0.00 0.00 0.00 3.07
4725 5023 5.725551 AATACACACCTAATCCCCATGAA 57.274 39.130 0.00 0.00 0.00 2.57
4726 5024 5.725551 ATACACACCTAATCCCCATGAAA 57.274 39.130 0.00 0.00 0.00 2.69
4727 5025 3.697166 ACACACCTAATCCCCATGAAAC 58.303 45.455 0.00 0.00 0.00 2.78
4728 5026 3.333680 ACACACCTAATCCCCATGAAACT 59.666 43.478 0.00 0.00 0.00 2.66
4729 5027 3.696051 CACACCTAATCCCCATGAAACTG 59.304 47.826 0.00 0.00 0.00 3.16
4730 5028 3.591527 ACACCTAATCCCCATGAAACTGA 59.408 43.478 0.00 0.00 0.00 3.41
4731 5029 4.202441 CACCTAATCCCCATGAAACTGAG 58.798 47.826 0.00 0.00 0.00 3.35
4732 5030 3.217626 CCTAATCCCCATGAAACTGAGC 58.782 50.000 0.00 0.00 0.00 4.26
4733 5031 3.117738 CCTAATCCCCATGAAACTGAGCT 60.118 47.826 0.00 0.00 0.00 4.09
4734 5032 2.725221 ATCCCCATGAAACTGAGCTC 57.275 50.000 6.82 6.82 0.00 4.09
4735 5033 0.250234 TCCCCATGAAACTGAGCTCG 59.750 55.000 9.64 6.63 0.00 5.03
4736 5034 0.036010 CCCCATGAAACTGAGCTCGT 60.036 55.000 9.64 7.31 0.00 4.18
4737 5035 1.611673 CCCCATGAAACTGAGCTCGTT 60.612 52.381 9.64 13.03 0.00 3.85
4738 5036 2.154462 CCCATGAAACTGAGCTCGTTT 58.846 47.619 25.89 25.89 37.30 3.60
4739 5037 2.554032 CCCATGAAACTGAGCTCGTTTT 59.446 45.455 26.14 19.76 34.94 2.43
4740 5038 3.004734 CCCATGAAACTGAGCTCGTTTTT 59.995 43.478 26.14 17.78 34.94 1.94
4741 5039 3.976942 CCATGAAACTGAGCTCGTTTTTG 59.023 43.478 26.14 24.22 34.94 2.44
4742 5040 4.498009 CCATGAAACTGAGCTCGTTTTTGT 60.498 41.667 26.14 17.10 34.94 2.83
4743 5041 4.695217 TGAAACTGAGCTCGTTTTTGTT 57.305 36.364 26.14 14.66 34.94 2.83
4744 5042 4.411327 TGAAACTGAGCTCGTTTTTGTTG 58.589 39.130 26.14 6.91 34.94 3.33
4745 5043 2.475200 ACTGAGCTCGTTTTTGTTGC 57.525 45.000 9.64 0.00 0.00 4.17
4746 5044 1.065551 ACTGAGCTCGTTTTTGTTGCC 59.934 47.619 9.64 0.00 0.00 4.52
4747 5045 1.334869 CTGAGCTCGTTTTTGTTGCCT 59.665 47.619 9.64 0.00 0.00 4.75
4748 5046 1.748493 TGAGCTCGTTTTTGTTGCCTT 59.252 42.857 9.64 0.00 0.00 4.35
4749 5047 2.223479 TGAGCTCGTTTTTGTTGCCTTC 60.223 45.455 9.64 0.00 0.00 3.46
4750 5048 2.024414 AGCTCGTTTTTGTTGCCTTCT 58.976 42.857 0.00 0.00 0.00 2.85
4751 5049 2.033424 AGCTCGTTTTTGTTGCCTTCTC 59.967 45.455 0.00 0.00 0.00 2.87
4752 5050 2.033424 GCTCGTTTTTGTTGCCTTCTCT 59.967 45.455 0.00 0.00 0.00 3.10
4753 5051 3.621794 CTCGTTTTTGTTGCCTTCTCTG 58.378 45.455 0.00 0.00 0.00 3.35
4754 5052 2.119457 CGTTTTTGTTGCCTTCTCTGC 58.881 47.619 0.00 0.00 0.00 4.26
4755 5053 2.223572 CGTTTTTGTTGCCTTCTCTGCT 60.224 45.455 0.00 0.00 0.00 4.24
4756 5054 3.375642 GTTTTTGTTGCCTTCTCTGCTC 58.624 45.455 0.00 0.00 0.00 4.26
4757 5055 1.609208 TTTGTTGCCTTCTCTGCTCC 58.391 50.000 0.00 0.00 0.00 4.70
4758 5056 0.603707 TTGTTGCCTTCTCTGCTCCG 60.604 55.000 0.00 0.00 0.00 4.63
4759 5057 2.046892 TTGCCTTCTCTGCTCCGC 60.047 61.111 0.00 0.00 0.00 5.54
4760 5058 3.939837 TTGCCTTCTCTGCTCCGCG 62.940 63.158 0.00 0.00 0.00 6.46
4770 5068 4.243383 GCTCCGCGCAACATTTTT 57.757 50.000 8.75 0.00 38.92 1.94
4771 5069 2.061977 GCTCCGCGCAACATTTTTC 58.938 52.632 8.75 0.00 38.92 2.29
4772 5070 1.344226 GCTCCGCGCAACATTTTTCC 61.344 55.000 8.75 0.00 38.92 3.13
4773 5071 0.240945 CTCCGCGCAACATTTTTCCT 59.759 50.000 8.75 0.00 0.00 3.36
4774 5072 0.239879 TCCGCGCAACATTTTTCCTC 59.760 50.000 8.75 0.00 0.00 3.71
4775 5073 0.732538 CCGCGCAACATTTTTCCTCC 60.733 55.000 8.75 0.00 0.00 4.30
4776 5074 0.039617 CGCGCAACATTTTTCCTCCA 60.040 50.000 8.75 0.00 0.00 3.86
4777 5075 1.402720 CGCGCAACATTTTTCCTCCAT 60.403 47.619 8.75 0.00 0.00 3.41
4778 5076 2.159448 CGCGCAACATTTTTCCTCCATA 60.159 45.455 8.75 0.00 0.00 2.74
4779 5077 3.438360 GCGCAACATTTTTCCTCCATAG 58.562 45.455 0.30 0.00 0.00 2.23
4780 5078 3.128589 GCGCAACATTTTTCCTCCATAGA 59.871 43.478 0.30 0.00 0.00 1.98
4781 5079 4.202050 GCGCAACATTTTTCCTCCATAGAT 60.202 41.667 0.30 0.00 0.00 1.98
4782 5080 5.514279 CGCAACATTTTTCCTCCATAGATC 58.486 41.667 0.00 0.00 0.00 2.75
4783 5081 5.506317 CGCAACATTTTTCCTCCATAGATCC 60.506 44.000 0.00 0.00 0.00 3.36
4784 5082 5.360714 GCAACATTTTTCCTCCATAGATCCA 59.639 40.000 0.00 0.00 0.00 3.41
4785 5083 6.041296 GCAACATTTTTCCTCCATAGATCCAT 59.959 38.462 0.00 0.00 0.00 3.41
4786 5084 7.431249 CAACATTTTTCCTCCATAGATCCATG 58.569 38.462 0.00 0.00 0.00 3.66
4787 5085 6.914665 ACATTTTTCCTCCATAGATCCATGA 58.085 36.000 2.36 0.00 0.00 3.07
4788 5086 7.002879 ACATTTTTCCTCCATAGATCCATGAG 58.997 38.462 2.36 0.00 0.00 2.90
4789 5087 6.829985 TTTTTCCTCCATAGATCCATGAGA 57.170 37.500 2.36 0.00 0.00 3.27
4790 5088 6.430962 TTTTCCTCCATAGATCCATGAGAG 57.569 41.667 2.36 7.47 0.00 3.20
4791 5089 4.058417 TCCTCCATAGATCCATGAGAGG 57.942 50.000 21.67 21.67 40.79 3.69
4792 5090 3.106054 CCTCCATAGATCCATGAGAGGG 58.894 54.545 20.74 8.16 38.46 4.30
4793 5091 3.106054 CTCCATAGATCCATGAGAGGGG 58.894 54.545 2.36 0.00 0.00 4.79
4794 5092 2.456340 TCCATAGATCCATGAGAGGGGT 59.544 50.000 2.36 0.00 0.00 4.95
4795 5093 2.570752 CCATAGATCCATGAGAGGGGTG 59.429 54.545 2.36 0.00 0.00 4.61
4796 5094 3.514539 CATAGATCCATGAGAGGGGTGA 58.485 50.000 0.00 0.00 0.00 4.02
4797 5095 2.100128 AGATCCATGAGAGGGGTGAG 57.900 55.000 0.00 0.00 0.00 3.51
4798 5096 0.396060 GATCCATGAGAGGGGTGAGC 59.604 60.000 0.00 0.00 0.00 4.26
4799 5097 0.030297 ATCCATGAGAGGGGTGAGCT 60.030 55.000 0.00 0.00 0.00 4.09
4800 5098 0.689080 TCCATGAGAGGGGTGAGCTC 60.689 60.000 6.82 6.82 0.00 4.09
4801 5099 1.440893 CATGAGAGGGGTGAGCTCG 59.559 63.158 9.64 0.00 0.00 5.03
4802 5100 1.000993 ATGAGAGGGGTGAGCTCGT 59.999 57.895 9.64 0.00 0.00 4.18
4803 5101 1.040339 ATGAGAGGGGTGAGCTCGTC 61.040 60.000 9.64 4.68 0.00 4.20
4804 5102 2.363147 AGAGGGGTGAGCTCGTCC 60.363 66.667 16.42 16.42 30.69 4.79
4805 5103 3.827898 GAGGGGTGAGCTCGTCCG 61.828 72.222 17.58 0.00 0.00 4.79
4806 5104 4.680537 AGGGGTGAGCTCGTCCGT 62.681 66.667 17.58 15.19 0.00 4.69
4807 5105 4.436998 GGGGTGAGCTCGTCCGTG 62.437 72.222 17.58 0.00 0.00 4.94
4809 5107 4.057428 GGTGAGCTCGTCCGTGCT 62.057 66.667 15.16 15.16 45.94 4.40
4810 5108 2.049063 GTGAGCTCGTCCGTGCTT 60.049 61.111 16.15 2.34 43.75 3.91
4811 5109 1.664965 GTGAGCTCGTCCGTGCTTT 60.665 57.895 16.15 0.00 43.75 3.51
4812 5110 1.069090 TGAGCTCGTCCGTGCTTTT 59.931 52.632 16.15 0.00 43.75 2.27
4813 5111 0.531974 TGAGCTCGTCCGTGCTTTTT 60.532 50.000 16.15 0.00 43.75 1.94
4841 5139 3.581024 TTTTTCTCTCATGCCATGTGC 57.419 42.857 4.31 0.00 41.77 4.57
4851 5149 2.438975 CCATGTGCAGTCCGCCAT 60.439 61.111 0.00 0.00 41.33 4.40
4852 5150 2.767445 CCATGTGCAGTCCGCCATG 61.767 63.158 5.89 5.89 43.40 3.66
4853 5151 2.438975 ATGTGCAGTCCGCCATGG 60.439 61.111 7.63 7.63 41.33 3.66
4875 5173 2.877975 CCATGAGGTTGGGCTCAAG 58.122 57.895 0.00 0.00 32.92 3.02
4886 5184 1.538047 GGGCTCAAGCACAAGATTGA 58.462 50.000 4.13 0.00 46.93 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 7.934457 AGTCTATTTAGCAGCATTAACCAATG 58.066 34.615 0.00 0.00 43.79 2.82
253 255 2.554344 GGCCTCACAACCTGTCCATAAA 60.554 50.000 0.00 0.00 0.00 1.40
256 258 1.380302 GGCCTCACAACCTGTCCAT 59.620 57.895 0.00 0.00 0.00 3.41
298 300 2.658707 GACGGCACTGCTCGTGAAC 61.659 63.158 18.40 4.95 46.81 3.18
384 387 1.470098 CTCCAGATTTCCCAAACTGCG 59.530 52.381 0.00 0.00 0.00 5.18
427 431 2.728007 GCCTAGATGCCTCCTTGTTTT 58.272 47.619 0.00 0.00 0.00 2.43
469 473 1.445942 CATAGGTCGATGCCCCGTT 59.554 57.895 0.00 0.00 0.00 4.44
528 532 1.406065 CCGATCTCCTCTGGTGGCAT 61.406 60.000 0.00 0.00 0.00 4.40
552 556 1.308998 AAAGGTGCAGAAACTGGTCG 58.691 50.000 0.00 0.00 31.21 4.79
558 562 3.145212 ACGACAAAAAGGTGCAGAAAC 57.855 42.857 0.00 0.00 0.00 2.78
559 563 3.942748 ACTACGACAAAAAGGTGCAGAAA 59.057 39.130 0.00 0.00 0.00 2.52
560 564 3.537580 ACTACGACAAAAAGGTGCAGAA 58.462 40.909 0.00 0.00 0.00 3.02
562 566 2.223377 GGACTACGACAAAAAGGTGCAG 59.777 50.000 0.00 0.00 0.00 4.41
563 567 2.158871 AGGACTACGACAAAAAGGTGCA 60.159 45.455 0.00 0.00 0.00 4.57
564 568 2.223377 CAGGACTACGACAAAAAGGTGC 59.777 50.000 0.00 0.00 0.00 5.01
569 574 3.640029 AGGAGACAGGACTACGACAAAAA 59.360 43.478 0.00 0.00 0.00 1.94
608 641 7.688918 ATCCTAGGATCAAGAGAGACAAAAT 57.311 36.000 19.18 0.00 0.00 1.82
644 682 3.853671 CACGAAGCAATGGATAACAAAGC 59.146 43.478 0.00 0.00 34.34 3.51
664 707 6.973843 TGGCTTTTCATATTGATCATAGCAC 58.026 36.000 0.00 0.00 0.00 4.40
728 771 6.346096 TCAGATTTGAACGGGTTAGGATAAG 58.654 40.000 0.00 0.00 0.00 1.73
735 778 4.561500 TCCATCAGATTTGAACGGGTTA 57.438 40.909 5.53 0.00 36.78 2.85
791 834 8.853469 ATTCTATCTCTTCGTTTTTAGTACCG 57.147 34.615 0.00 0.00 0.00 4.02
844 896 5.505780 ACAGATTTGGGAACGATGGAATTA 58.494 37.500 0.00 0.00 0.00 1.40
891 943 3.186047 CGACTAAACCAGCCGCCG 61.186 66.667 0.00 0.00 0.00 6.46
892 944 2.818274 CCGACTAAACCAGCCGCC 60.818 66.667 0.00 0.00 0.00 6.13
893 945 3.497031 GCCGACTAAACCAGCCGC 61.497 66.667 0.00 0.00 0.00 6.53
894 946 3.186047 CGCCGACTAAACCAGCCG 61.186 66.667 0.00 0.00 0.00 5.52
895 947 1.810030 CTCGCCGACTAAACCAGCC 60.810 63.158 0.00 0.00 0.00 4.85
896 948 2.453638 GCTCGCCGACTAAACCAGC 61.454 63.158 0.00 0.00 0.00 4.85
897 949 1.078759 CAGCTCGCCGACTAAACCAG 61.079 60.000 0.00 0.00 0.00 4.00
898 950 1.080093 CAGCTCGCCGACTAAACCA 60.080 57.895 0.00 0.00 0.00 3.67
899 951 1.077089 GTCAGCTCGCCGACTAAACC 61.077 60.000 0.00 0.00 0.00 3.27
900 952 1.403972 CGTCAGCTCGCCGACTAAAC 61.404 60.000 4.03 0.00 0.00 2.01
901 953 1.154093 CGTCAGCTCGCCGACTAAA 60.154 57.895 4.03 0.00 0.00 1.85
902 954 2.483745 CGTCAGCTCGCCGACTAA 59.516 61.111 4.03 0.00 0.00 2.24
903 955 3.506096 CCGTCAGCTCGCCGACTA 61.506 66.667 4.03 0.00 0.00 2.59
933 1001 2.742589 GGACCGAAGAACACAAGGAATC 59.257 50.000 0.00 0.00 0.00 2.52
1007 1076 2.633509 GGGAAACAGCAGCAGCAGG 61.634 63.158 3.17 0.00 45.49 4.85
1008 1077 2.633509 GGGGAAACAGCAGCAGCAG 61.634 63.158 3.17 0.00 45.49 4.24
1324 1393 5.324409 ACACATAATTCTTTGGGCTTCTGA 58.676 37.500 0.00 0.00 0.00 3.27
1325 1394 5.416952 AGACACATAATTCTTTGGGCTTCTG 59.583 40.000 0.00 0.00 0.00 3.02
1326 1395 5.574188 AGACACATAATTCTTTGGGCTTCT 58.426 37.500 0.00 0.00 0.00 2.85
1342 1411 8.587608 ACAAATCCATATTGAACAAAGACACAT 58.412 29.630 0.00 0.00 0.00 3.21
1386 1457 1.686052 GACCAATTGCCACCACAGAAA 59.314 47.619 0.00 0.00 0.00 2.52
1408 1479 1.167851 CTTCGGATTCTTGCTGCCAA 58.832 50.000 0.00 0.00 0.00 4.52
1520 1601 0.388649 GAGTACACTCAGTGGCCACG 60.389 60.000 29.68 23.21 42.42 4.94
1582 1663 7.172019 GGTTCCGAATTTACTGACAAACTTCTA 59.828 37.037 0.00 0.00 0.00 2.10
1583 1664 6.017357 GGTTCCGAATTTACTGACAAACTTCT 60.017 38.462 0.00 0.00 0.00 2.85
1645 1726 3.654273 AGCCTAGGCAGGTAATTACTGA 58.346 45.455 34.70 0.00 44.68 3.41
1714 1933 2.224670 TGTCCTTCGTAGCCCATGTTTT 60.225 45.455 0.00 0.00 0.00 2.43
1721 1940 4.036380 CCAAATAATTGTCCTTCGTAGCCC 59.964 45.833 0.00 0.00 34.60 5.19
1743 1963 5.875359 ACTGCTACAGTATTTTCTAGCAACC 59.125 40.000 0.00 0.00 43.46 3.77
1810 2030 2.426024 CCAGCAAGTGAATCATGAAGGG 59.574 50.000 0.00 0.00 0.00 3.95
1829 2049 5.074115 CCTTCAACCAAAACATAGGTACCA 58.926 41.667 15.94 0.00 37.07 3.25
1858 2078 0.911769 TCAGGCACCCCTTCATGTAG 59.088 55.000 0.00 0.00 40.33 2.74
2072 2292 4.126208 TCCGGCAATATTTCGAACAGTA 57.874 40.909 0.00 0.00 0.00 2.74
2172 2405 7.435192 TCAGTATACATCTCAAATACACAAGCG 59.565 37.037 5.50 0.00 0.00 4.68
2179 2412 6.925718 TGCAGCTCAGTATACATCTCAAATAC 59.074 38.462 5.50 0.00 0.00 1.89
2262 2495 3.857157 AGCAACCTTGAGGACAACTAA 57.143 42.857 3.59 0.00 38.94 2.24
2264 2497 2.173569 AGAAGCAACCTTGAGGACAACT 59.826 45.455 3.59 0.00 38.94 3.16
2293 2526 4.533222 GTGTGTCAAGGGTATTGAAAACG 58.467 43.478 0.00 0.00 0.00 3.60
2299 2532 3.813166 ACTTTCGTGTGTCAAGGGTATTG 59.187 43.478 0.00 0.00 0.00 1.90
2324 2557 8.045176 AGACAGTTGTATTCCTGAATAAAAGC 57.955 34.615 3.30 0.75 32.72 3.51
2357 2590 9.369904 ACTGGCATAAATAAATTAACTGCAAAG 57.630 29.630 0.00 0.00 0.00 2.77
2469 2702 7.913674 ACATGAAACAGAAACTATCTCCTTC 57.086 36.000 0.00 0.00 35.73 3.46
2506 2739 3.784511 ATTGGATCACATCTAGGGCAG 57.215 47.619 0.00 0.00 0.00 4.85
2545 2778 4.493819 ACATATACCCATGGAGAGAGGT 57.506 45.455 15.22 3.54 36.36 3.85
2609 2842 9.357652 ACAACATTTGCAATTGACAAGATATAC 57.642 29.630 24.13 0.00 0.00 1.47
2880 3119 7.552459 TCCAAACGATATACTGTGATCTGAAA 58.448 34.615 0.00 0.00 0.00 2.69
2890 3129 6.423905 CCATACCAACTCCAAACGATATACTG 59.576 42.308 0.00 0.00 0.00 2.74
3008 3249 1.684248 GGACGGAGGGAGTAGTAAGCA 60.684 57.143 0.00 0.00 0.00 3.91
3016 3257 0.042131 TATTGTGGGACGGAGGGAGT 59.958 55.000 0.00 0.00 0.00 3.85
3017 3258 1.424638 ATATTGTGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
3018 3259 2.779429 TATATTGTGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
3019 3260 2.969950 TCTTATATTGTGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
3020 3261 3.555168 GCTCTTATATTGTGGGACGGAGG 60.555 52.174 0.00 0.00 0.00 4.30
3021 3262 3.322254 AGCTCTTATATTGTGGGACGGAG 59.678 47.826 0.00 0.00 0.00 4.63
3022 3263 3.305720 AGCTCTTATATTGTGGGACGGA 58.694 45.455 0.00 0.00 0.00 4.69
3023 3264 3.753294 AGCTCTTATATTGTGGGACGG 57.247 47.619 0.00 0.00 0.00 4.79
3024 3265 6.436843 AAAAAGCTCTTATATTGTGGGACG 57.563 37.500 0.00 0.00 0.00 4.79
3052 3293 3.057734 GCGTTTTCTACACTAGTGCAGT 58.942 45.455 22.90 6.24 38.32 4.40
3053 3294 3.318017 AGCGTTTTCTACACTAGTGCAG 58.682 45.455 22.90 19.23 0.00 4.41
3054 3295 3.005472 AGAGCGTTTTCTACACTAGTGCA 59.995 43.478 22.90 9.40 0.00 4.57
3055 3296 3.576648 AGAGCGTTTTCTACACTAGTGC 58.423 45.455 22.90 5.36 0.00 4.40
3056 3297 9.517609 AATATAAGAGCGTTTTCTACACTAGTG 57.482 33.333 21.44 21.44 0.00 2.74
3060 3301 9.477484 CCATAATATAAGAGCGTTTTCTACACT 57.523 33.333 0.00 0.00 0.00 3.55
3061 3302 8.709646 CCCATAATATAAGAGCGTTTTCTACAC 58.290 37.037 0.00 0.00 0.00 2.90
3062 3303 8.644216 TCCCATAATATAAGAGCGTTTTCTACA 58.356 33.333 0.00 0.00 0.00 2.74
3063 3304 8.923683 GTCCCATAATATAAGAGCGTTTTCTAC 58.076 37.037 0.00 0.00 0.00 2.59
3064 3305 7.811236 CGTCCCATAATATAAGAGCGTTTTCTA 59.189 37.037 0.00 0.00 0.00 2.10
3065 3306 6.645415 CGTCCCATAATATAAGAGCGTTTTCT 59.355 38.462 0.00 0.00 0.00 2.52
3066 3307 6.128634 CCGTCCCATAATATAAGAGCGTTTTC 60.129 42.308 0.00 0.00 0.00 2.29
3067 3308 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
3068 3309 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
3069 3310 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
3070 3311 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
3071 3312 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
3072 3313 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
3073 3314 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
3074 3315 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3075 3316 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3076 3317 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3077 3318 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3078 3319 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3079 3320 3.501019 GGTACTCCCTCCGTCCCATAATA 60.501 52.174 0.00 0.00 0.00 0.98
3080 3321 2.606378 GTACTCCCTCCGTCCCATAAT 58.394 52.381 0.00 0.00 0.00 1.28
3081 3322 1.412074 GGTACTCCCTCCGTCCCATAA 60.412 57.143 0.00 0.00 0.00 1.90
3082 3323 0.186873 GGTACTCCCTCCGTCCCATA 59.813 60.000 0.00 0.00 0.00 2.74
3083 3324 1.075450 GGTACTCCCTCCGTCCCAT 60.075 63.158 0.00 0.00 0.00 4.00
3084 3325 2.096707 TTGGTACTCCCTCCGTCCCA 62.097 60.000 0.00 0.00 0.00 4.37
3085 3326 0.690077 ATTGGTACTCCCTCCGTCCC 60.690 60.000 0.00 0.00 0.00 4.46
3086 3327 1.201424 AATTGGTACTCCCTCCGTCC 58.799 55.000 0.00 0.00 0.00 4.79
3087 3328 3.244112 CCATAATTGGTACTCCCTCCGTC 60.244 52.174 0.00 0.00 38.30 4.79
3088 3329 2.704065 CCATAATTGGTACTCCCTCCGT 59.296 50.000 0.00 0.00 38.30 4.69
3089 3330 2.550208 GCCATAATTGGTACTCCCTCCG 60.550 54.545 0.00 0.00 45.57 4.63
3090 3331 2.441750 TGCCATAATTGGTACTCCCTCC 59.558 50.000 0.00 0.00 45.57 4.30
3091 3332 3.857157 TGCCATAATTGGTACTCCCTC 57.143 47.619 0.00 0.00 45.57 4.30
3092 3333 4.814224 ATTGCCATAATTGGTACTCCCT 57.186 40.909 0.00 0.00 45.57 4.20
3093 3334 5.200368 CAATTGCCATAATTGGTACTCCC 57.800 43.478 0.00 0.00 45.57 4.30
3110 3351 9.135189 TCCTTTTGATGGAGAATATACCAATTG 57.865 33.333 0.00 0.00 39.69 2.32
3201 3443 3.632604 TCAGCGAGAGTAGTTCCCTAATG 59.367 47.826 0.00 0.00 0.00 1.90
3219 3461 2.221906 TAGGCCCTTCGTCGTTCAGC 62.222 60.000 0.00 0.00 0.00 4.26
3225 3467 2.884207 GCGTTAGGCCCTTCGTCG 60.884 66.667 0.00 0.00 34.80 5.12
3288 3530 6.584471 TTTGGACCCCTTGTGTATATATGT 57.416 37.500 0.00 0.00 0.00 2.29
3316 3558 6.508030 TCATCCTTGCCCATACAGTAATTA 57.492 37.500 0.00 0.00 0.00 1.40
3573 3815 9.783081 AGGAAATGAAAATGTTTTAAGCAATCT 57.217 25.926 0.00 0.00 0.00 2.40
3633 3875 3.506844 GGATAGTAAGTAGAGGGAAGCCG 59.493 52.174 0.00 0.00 0.00 5.52
3636 3878 6.042208 CCCAAAGGATAGTAAGTAGAGGGAAG 59.958 46.154 0.00 0.00 33.23 3.46
3658 3904 5.826643 ACTAATAAAGATGAAAGGTGCCCA 58.173 37.500 0.00 0.00 0.00 5.36
3677 3923 9.379791 GGGACGTTAGTTAACTACTAGTACTAA 57.620 37.037 14.96 9.99 40.35 2.24
3701 3948 5.009710 TGAGCGTTTATCTGACTACTATGGG 59.990 44.000 0.00 0.00 0.00 4.00
3750 4000 3.958147 ATGTTGACGGCCTCCTGCG 62.958 63.158 0.00 0.00 42.61 5.18
4108 4365 5.104259 ACTACATCTTCTAGCTTTTGGGG 57.896 43.478 0.00 0.00 0.00 4.96
4447 4745 3.552604 TGAGAACCGCTTGTAAATTGC 57.447 42.857 0.00 0.00 0.00 3.56
4466 4764 2.368221 TCCCTTTGCCAAAACATCCTTG 59.632 45.455 0.00 0.00 0.00 3.61
4472 4770 1.550976 ACGTTTCCCTTTGCCAAAACA 59.449 42.857 0.00 0.00 32.46 2.83
4530 4828 4.947278 CTAGCGACGCGAGCGAGG 62.947 72.222 24.72 15.10 42.83 4.63
4531 4829 4.947278 CCTAGCGACGCGAGCGAG 62.947 72.222 24.72 24.70 42.83 5.03
4552 4850 4.994756 GTGGTTGGTGGGCCTGGG 62.995 72.222 4.53 0.00 35.27 4.45
4553 4851 4.217210 TGTGGTTGGTGGGCCTGG 62.217 66.667 4.53 0.00 35.27 4.45
4554 4852 2.598394 CTGTGGTTGGTGGGCCTG 60.598 66.667 4.53 0.00 35.27 4.85
4555 4853 2.391130 TTCTGTGGTTGGTGGGCCT 61.391 57.895 4.53 0.00 35.27 5.19
4556 4854 2.197324 TTCTGTGGTTGGTGGGCC 59.803 61.111 0.00 0.00 0.00 5.80
4557 4855 0.755327 AAGTTCTGTGGTTGGTGGGC 60.755 55.000 0.00 0.00 0.00 5.36
4558 4856 2.649531 TAAGTTCTGTGGTTGGTGGG 57.350 50.000 0.00 0.00 0.00 4.61
4559 4857 4.003648 GAGATAAGTTCTGTGGTTGGTGG 58.996 47.826 0.00 0.00 33.74 4.61
4560 4858 4.899502 AGAGATAAGTTCTGTGGTTGGTG 58.100 43.478 0.00 0.00 33.74 4.17
4561 4859 6.465084 GTTAGAGATAAGTTCTGTGGTTGGT 58.535 40.000 0.00 0.00 33.74 3.67
4562 4860 5.875359 GGTTAGAGATAAGTTCTGTGGTTGG 59.125 44.000 0.00 0.00 33.74 3.77
4563 4861 5.875359 GGGTTAGAGATAAGTTCTGTGGTTG 59.125 44.000 0.00 0.00 33.74 3.77
4564 4862 5.045797 GGGGTTAGAGATAAGTTCTGTGGTT 60.046 44.000 0.00 0.00 33.74 3.67
4565 4863 4.470304 GGGGTTAGAGATAAGTTCTGTGGT 59.530 45.833 0.00 0.00 33.74 4.16
4566 4864 4.469945 TGGGGTTAGAGATAAGTTCTGTGG 59.530 45.833 0.00 0.00 33.74 4.17
4567 4865 5.420409 GTGGGGTTAGAGATAAGTTCTGTG 58.580 45.833 0.00 0.00 33.74 3.66
4568 4866 4.470304 GGTGGGGTTAGAGATAAGTTCTGT 59.530 45.833 0.00 0.00 33.74 3.41
4569 4867 4.469945 TGGTGGGGTTAGAGATAAGTTCTG 59.530 45.833 0.00 0.00 33.74 3.02
4570 4868 4.470304 GTGGTGGGGTTAGAGATAAGTTCT 59.530 45.833 0.00 0.00 37.41 3.01
4571 4869 4.470304 AGTGGTGGGGTTAGAGATAAGTTC 59.530 45.833 0.00 0.00 0.00 3.01
4572 4870 4.436079 AGTGGTGGGGTTAGAGATAAGTT 58.564 43.478 0.00 0.00 0.00 2.66
4573 4871 4.076175 AGTGGTGGGGTTAGAGATAAGT 57.924 45.455 0.00 0.00 0.00 2.24
4574 4872 4.141688 GGAAGTGGTGGGGTTAGAGATAAG 60.142 50.000 0.00 0.00 0.00 1.73
4575 4873 3.778629 GGAAGTGGTGGGGTTAGAGATAA 59.221 47.826 0.00 0.00 0.00 1.75
4576 4874 3.246203 TGGAAGTGGTGGGGTTAGAGATA 60.246 47.826 0.00 0.00 0.00 1.98
4577 4875 2.197465 GGAAGTGGTGGGGTTAGAGAT 58.803 52.381 0.00 0.00 0.00 2.75
4578 4876 1.132657 TGGAAGTGGTGGGGTTAGAGA 60.133 52.381 0.00 0.00 0.00 3.10
4579 4877 1.358152 TGGAAGTGGTGGGGTTAGAG 58.642 55.000 0.00 0.00 0.00 2.43
4580 4878 1.913419 GATGGAAGTGGTGGGGTTAGA 59.087 52.381 0.00 0.00 0.00 2.10
4581 4879 1.916181 AGATGGAAGTGGTGGGGTTAG 59.084 52.381 0.00 0.00 0.00 2.34
4582 4880 2.053747 AGATGGAAGTGGTGGGGTTA 57.946 50.000 0.00 0.00 0.00 2.85
4583 4881 1.158007 AAGATGGAAGTGGTGGGGTT 58.842 50.000 0.00 0.00 0.00 4.11
4584 4882 2.053747 TAAGATGGAAGTGGTGGGGT 57.946 50.000 0.00 0.00 0.00 4.95
4585 4883 2.158608 GGATAAGATGGAAGTGGTGGGG 60.159 54.545 0.00 0.00 0.00 4.96
4586 4884 2.158608 GGGATAAGATGGAAGTGGTGGG 60.159 54.545 0.00 0.00 0.00 4.61
4587 4885 2.158608 GGGGATAAGATGGAAGTGGTGG 60.159 54.545 0.00 0.00 0.00 4.61
4588 4886 2.780010 AGGGGATAAGATGGAAGTGGTG 59.220 50.000 0.00 0.00 0.00 4.17
4589 4887 3.049344 GAGGGGATAAGATGGAAGTGGT 58.951 50.000 0.00 0.00 0.00 4.16
4590 4888 2.037772 CGAGGGGATAAGATGGAAGTGG 59.962 54.545 0.00 0.00 0.00 4.00
4591 4889 2.548920 GCGAGGGGATAAGATGGAAGTG 60.549 54.545 0.00 0.00 0.00 3.16
4592 4890 1.694696 GCGAGGGGATAAGATGGAAGT 59.305 52.381 0.00 0.00 0.00 3.01
4593 4891 1.974236 AGCGAGGGGATAAGATGGAAG 59.026 52.381 0.00 0.00 0.00 3.46
4594 4892 1.971357 GAGCGAGGGGATAAGATGGAA 59.029 52.381 0.00 0.00 0.00 3.53
4595 4893 1.148027 AGAGCGAGGGGATAAGATGGA 59.852 52.381 0.00 0.00 0.00 3.41
4596 4894 1.638529 AGAGCGAGGGGATAAGATGG 58.361 55.000 0.00 0.00 0.00 3.51
4597 4895 3.323403 AGAAAGAGCGAGGGGATAAGATG 59.677 47.826 0.00 0.00 0.00 2.90
4598 4896 3.323403 CAGAAAGAGCGAGGGGATAAGAT 59.677 47.826 0.00 0.00 0.00 2.40
4599 4897 2.695666 CAGAAAGAGCGAGGGGATAAGA 59.304 50.000 0.00 0.00 0.00 2.10
4600 4898 2.224161 CCAGAAAGAGCGAGGGGATAAG 60.224 54.545 0.00 0.00 0.00 1.73
4601 4899 1.762957 CCAGAAAGAGCGAGGGGATAA 59.237 52.381 0.00 0.00 0.00 1.75
4602 4900 1.063190 TCCAGAAAGAGCGAGGGGATA 60.063 52.381 0.00 0.00 0.00 2.59
4603 4901 0.325671 TCCAGAAAGAGCGAGGGGAT 60.326 55.000 0.00 0.00 0.00 3.85
4604 4902 0.972983 CTCCAGAAAGAGCGAGGGGA 60.973 60.000 0.00 0.00 0.00 4.81
4605 4903 0.972983 TCTCCAGAAAGAGCGAGGGG 60.973 60.000 0.00 0.00 33.66 4.79
4606 4904 0.174617 GTCTCCAGAAAGAGCGAGGG 59.825 60.000 0.00 0.00 33.66 4.30
4607 4905 0.174617 GGTCTCCAGAAAGAGCGAGG 59.825 60.000 0.00 0.00 34.42 4.63
4608 4906 0.891373 TGGTCTCCAGAAAGAGCGAG 59.109 55.000 0.00 0.00 44.80 5.03
4609 4907 0.603569 GTGGTCTCCAGAAAGAGCGA 59.396 55.000 0.00 0.00 44.80 4.93
4610 4908 0.318441 TGTGGTCTCCAGAAAGAGCG 59.682 55.000 0.00 0.00 44.80 5.03
4611 4909 1.802069 GTGTGGTCTCCAGAAAGAGC 58.198 55.000 0.00 0.00 42.73 4.09
4612 4910 1.613925 TCGTGTGGTCTCCAGAAAGAG 59.386 52.381 0.00 0.00 32.34 2.85
4613 4911 1.613925 CTCGTGTGGTCTCCAGAAAGA 59.386 52.381 0.00 0.00 32.34 2.52
4614 4912 1.337260 CCTCGTGTGGTCTCCAGAAAG 60.337 57.143 0.00 0.00 32.34 2.62
4615 4913 0.679505 CCTCGTGTGGTCTCCAGAAA 59.320 55.000 0.00 0.00 32.34 2.52
4616 4914 1.816863 GCCTCGTGTGGTCTCCAGAA 61.817 60.000 0.00 0.00 32.34 3.02
4617 4915 2.276116 GCCTCGTGTGGTCTCCAGA 61.276 63.158 0.00 0.00 32.34 3.86
4618 4916 1.892819 ATGCCTCGTGTGGTCTCCAG 61.893 60.000 0.00 0.00 32.34 3.86
4619 4917 1.888436 GATGCCTCGTGTGGTCTCCA 61.888 60.000 0.00 0.00 0.00 3.86
4620 4918 1.153549 GATGCCTCGTGTGGTCTCC 60.154 63.158 0.00 0.00 0.00 3.71
4621 4919 1.153549 GGATGCCTCGTGTGGTCTC 60.154 63.158 0.00 0.00 0.00 3.36
4622 4920 1.608717 GAGGATGCCTCGTGTGGTCT 61.609 60.000 0.00 0.00 41.08 3.85
4623 4921 1.153549 GAGGATGCCTCGTGTGGTC 60.154 63.158 0.00 0.00 41.08 4.02
4624 4922 2.982130 GAGGATGCCTCGTGTGGT 59.018 61.111 0.00 0.00 41.08 4.16
4631 4929 2.107953 GCAGGACGAGGATGCCTC 59.892 66.667 3.36 3.36 46.44 4.70
4632 4930 2.364842 AGCAGGACGAGGATGCCT 60.365 61.111 0.00 0.00 40.89 4.75
4633 4931 2.107953 GAGCAGGACGAGGATGCC 59.892 66.667 0.00 0.00 40.89 4.40
4634 4932 2.279120 CGAGCAGGACGAGGATGC 60.279 66.667 0.00 0.00 40.29 3.91
4635 4933 2.279120 GCGAGCAGGACGAGGATG 60.279 66.667 0.00 0.00 0.00 3.51
4636 4934 3.532155 GGCGAGCAGGACGAGGAT 61.532 66.667 0.00 0.00 0.00 3.24
4639 4937 3.708220 GAAGGGCGAGCAGGACGAG 62.708 68.421 0.00 0.00 0.00 4.18
4640 4938 3.760035 GAAGGGCGAGCAGGACGA 61.760 66.667 0.00 0.00 0.00 4.20
4641 4939 3.997064 CTGAAGGGCGAGCAGGACG 62.997 68.421 0.00 0.00 0.00 4.79
4642 4940 2.125350 CTGAAGGGCGAGCAGGAC 60.125 66.667 0.00 0.00 0.00 3.85
4643 4941 2.604686 ACTGAAGGGCGAGCAGGA 60.605 61.111 0.00 0.00 34.05 3.86
4644 4942 2.125350 GACTGAAGGGCGAGCAGG 60.125 66.667 0.00 0.00 34.05 4.85
4645 4943 2.125350 GGACTGAAGGGCGAGCAG 60.125 66.667 0.00 0.00 35.81 4.24
4646 4944 2.604686 AGGACTGAAGGGCGAGCA 60.605 61.111 0.00 0.00 0.00 4.26
4647 4945 2.185608 GAGGACTGAAGGGCGAGC 59.814 66.667 0.00 0.00 0.00 5.03
4648 4946 1.999071 CTCGAGGACTGAAGGGCGAG 61.999 65.000 3.91 0.00 39.12 5.03
4649 4947 2.035155 TCGAGGACTGAAGGGCGA 59.965 61.111 0.00 0.00 0.00 5.54
4650 4948 1.878656 AACTCGAGGACTGAAGGGCG 61.879 60.000 18.41 0.00 0.00 6.13
4651 4949 0.108567 GAACTCGAGGACTGAAGGGC 60.109 60.000 18.41 0.00 0.00 5.19
4652 4950 1.474879 GAGAACTCGAGGACTGAAGGG 59.525 57.143 18.41 0.00 0.00 3.95
4653 4951 2.163509 TGAGAACTCGAGGACTGAAGG 58.836 52.381 18.41 0.00 0.00 3.46
4654 4952 3.924918 TTGAGAACTCGAGGACTGAAG 57.075 47.619 18.41 0.00 0.00 3.02
4655 4953 4.082845 AGATTGAGAACTCGAGGACTGAA 58.917 43.478 18.41 15.14 0.00 3.02
4656 4954 3.691575 AGATTGAGAACTCGAGGACTGA 58.308 45.455 18.41 6.78 0.00 3.41
4657 4955 3.694072 AGAGATTGAGAACTCGAGGACTG 59.306 47.826 18.41 0.00 38.08 3.51
4658 4956 3.945285 GAGAGATTGAGAACTCGAGGACT 59.055 47.826 18.41 14.89 38.08 3.85
4659 4957 3.066203 GGAGAGATTGAGAACTCGAGGAC 59.934 52.174 18.41 10.09 38.08 3.85
4660 4958 3.053991 AGGAGAGATTGAGAACTCGAGGA 60.054 47.826 18.41 0.00 38.08 3.71
4661 4959 3.287222 AGGAGAGATTGAGAACTCGAGG 58.713 50.000 18.41 0.00 38.08 4.63
4662 4960 3.315191 GGAGGAGAGATTGAGAACTCGAG 59.685 52.174 11.84 11.84 38.08 4.04
4663 4961 3.053991 AGGAGGAGAGATTGAGAACTCGA 60.054 47.826 0.00 0.00 38.08 4.04
4664 4962 3.287222 AGGAGGAGAGATTGAGAACTCG 58.713 50.000 0.00 0.00 38.08 4.18
4665 4963 4.099419 GGAAGGAGGAGAGATTGAGAACTC 59.901 50.000 0.00 0.00 0.00 3.01
4666 4964 4.030216 GGAAGGAGGAGAGATTGAGAACT 58.970 47.826 0.00 0.00 0.00 3.01
4667 4965 4.030216 AGGAAGGAGGAGAGATTGAGAAC 58.970 47.826 0.00 0.00 0.00 3.01
4668 4966 4.029520 CAGGAAGGAGGAGAGATTGAGAA 58.970 47.826 0.00 0.00 0.00 2.87
4669 4967 3.012274 ACAGGAAGGAGGAGAGATTGAGA 59.988 47.826 0.00 0.00 0.00 3.27
4670 4968 3.132646 CACAGGAAGGAGGAGAGATTGAG 59.867 52.174 0.00 0.00 0.00 3.02
4671 4969 3.102972 CACAGGAAGGAGGAGAGATTGA 58.897 50.000 0.00 0.00 0.00 2.57
4672 4970 2.836981 ACACAGGAAGGAGGAGAGATTG 59.163 50.000 0.00 0.00 0.00 2.67
4673 4971 3.197927 ACACAGGAAGGAGGAGAGATT 57.802 47.619 0.00 0.00 0.00 2.40
4674 4972 2.938428 ACACAGGAAGGAGGAGAGAT 57.062 50.000 0.00 0.00 0.00 2.75
4675 4973 2.110899 AGAACACAGGAAGGAGGAGAGA 59.889 50.000 0.00 0.00 0.00 3.10
4676 4974 2.495669 GAGAACACAGGAAGGAGGAGAG 59.504 54.545 0.00 0.00 0.00 3.20
4677 4975 2.158310 TGAGAACACAGGAAGGAGGAGA 60.158 50.000 0.00 0.00 0.00 3.71
4678 4976 2.028567 GTGAGAACACAGGAAGGAGGAG 60.029 54.545 0.00 0.00 45.32 3.69
4679 4977 1.971357 GTGAGAACACAGGAAGGAGGA 59.029 52.381 0.00 0.00 45.32 3.71
4680 4978 2.464157 GTGAGAACACAGGAAGGAGG 57.536 55.000 0.00 0.00 45.32 4.30
4685 4983 9.018339 GTGTGTATTTTGGTGAGAACACAGGAA 62.018 40.741 6.36 0.00 45.45 3.36
4686 4984 7.625401 GTGTGTATTTTGGTGAGAACACAGGA 61.625 42.308 6.36 0.00 45.45 3.86
4687 4985 5.505654 GTGTGTATTTTGGTGAGAACACAGG 60.506 44.000 6.36 0.00 45.45 4.00
4688 4986 5.505654 GGTGTGTATTTTGGTGAGAACACAG 60.506 44.000 6.36 0.00 45.45 3.66
4690 4988 4.578928 AGGTGTGTATTTTGGTGAGAACAC 59.421 41.667 0.00 0.00 45.27 3.32
4691 4989 4.787551 AGGTGTGTATTTTGGTGAGAACA 58.212 39.130 0.00 0.00 0.00 3.18
4692 4990 6.870971 TTAGGTGTGTATTTTGGTGAGAAC 57.129 37.500 0.00 0.00 0.00 3.01
4693 4991 6.657541 GGATTAGGTGTGTATTTTGGTGAGAA 59.342 38.462 0.00 0.00 0.00 2.87
4694 4992 6.177610 GGATTAGGTGTGTATTTTGGTGAGA 58.822 40.000 0.00 0.00 0.00 3.27
4695 4993 5.357032 GGGATTAGGTGTGTATTTTGGTGAG 59.643 44.000 0.00 0.00 0.00 3.51
4696 4994 5.258051 GGGATTAGGTGTGTATTTTGGTGA 58.742 41.667 0.00 0.00 0.00 4.02
4697 4995 4.401202 GGGGATTAGGTGTGTATTTTGGTG 59.599 45.833 0.00 0.00 0.00 4.17
4698 4996 4.044825 TGGGGATTAGGTGTGTATTTTGGT 59.955 41.667 0.00 0.00 0.00 3.67
4699 4997 4.605183 TGGGGATTAGGTGTGTATTTTGG 58.395 43.478 0.00 0.00 0.00 3.28
4700 4998 5.890985 TCATGGGGATTAGGTGTGTATTTTG 59.109 40.000 0.00 0.00 0.00 2.44
4701 4999 6.086011 TCATGGGGATTAGGTGTGTATTTT 57.914 37.500 0.00 0.00 0.00 1.82
4702 5000 5.725551 TCATGGGGATTAGGTGTGTATTT 57.274 39.130 0.00 0.00 0.00 1.40
4703 5001 5.725551 TTCATGGGGATTAGGTGTGTATT 57.274 39.130 0.00 0.00 0.00 1.89
4704 5002 5.193728 AGTTTCATGGGGATTAGGTGTGTAT 59.806 40.000 0.00 0.00 0.00 2.29
4705 5003 4.538490 AGTTTCATGGGGATTAGGTGTGTA 59.462 41.667 0.00 0.00 0.00 2.90
4706 5004 3.333680 AGTTTCATGGGGATTAGGTGTGT 59.666 43.478 0.00 0.00 0.00 3.72
4707 5005 3.696051 CAGTTTCATGGGGATTAGGTGTG 59.304 47.826 0.00 0.00 0.00 3.82
4708 5006 3.591527 TCAGTTTCATGGGGATTAGGTGT 59.408 43.478 0.00 0.00 0.00 4.16
4709 5007 4.202441 CTCAGTTTCATGGGGATTAGGTG 58.798 47.826 0.00 0.00 0.00 4.00
4710 5008 3.372025 GCTCAGTTTCATGGGGATTAGGT 60.372 47.826 0.00 0.00 0.00 3.08
4711 5009 3.117738 AGCTCAGTTTCATGGGGATTAGG 60.118 47.826 0.00 0.00 0.00 2.69
4712 5010 4.133078 GAGCTCAGTTTCATGGGGATTAG 58.867 47.826 9.40 0.00 0.00 1.73
4713 5011 3.432186 CGAGCTCAGTTTCATGGGGATTA 60.432 47.826 15.40 0.00 0.00 1.75
4714 5012 2.681976 CGAGCTCAGTTTCATGGGGATT 60.682 50.000 15.40 0.00 0.00 3.01
4715 5013 1.134280 CGAGCTCAGTTTCATGGGGAT 60.134 52.381 15.40 0.00 0.00 3.85
4716 5014 0.250234 CGAGCTCAGTTTCATGGGGA 59.750 55.000 15.40 0.00 0.00 4.81
4717 5015 0.036010 ACGAGCTCAGTTTCATGGGG 60.036 55.000 15.40 0.00 0.00 4.96
4718 5016 1.813513 AACGAGCTCAGTTTCATGGG 58.186 50.000 15.40 0.00 0.00 4.00
4719 5017 3.904136 AAAACGAGCTCAGTTTCATGG 57.096 42.857 25.81 7.34 40.49 3.66
4720 5018 4.601019 ACAAAAACGAGCTCAGTTTCATG 58.399 39.130 25.81 25.90 40.49 3.07
4721 5019 4.900635 ACAAAAACGAGCTCAGTTTCAT 57.099 36.364 25.81 18.72 40.49 2.57
4722 5020 4.411327 CAACAAAAACGAGCTCAGTTTCA 58.589 39.130 25.81 0.00 40.49 2.69
4723 5021 3.240631 GCAACAAAAACGAGCTCAGTTTC 59.759 43.478 25.81 14.82 40.49 2.78
4724 5022 3.179048 GCAACAAAAACGAGCTCAGTTT 58.821 40.909 22.45 22.45 42.86 2.66
4725 5023 2.479560 GGCAACAAAAACGAGCTCAGTT 60.480 45.455 15.40 15.29 0.00 3.16
4726 5024 1.065551 GGCAACAAAAACGAGCTCAGT 59.934 47.619 15.40 9.89 0.00 3.41
4727 5025 1.334869 AGGCAACAAAAACGAGCTCAG 59.665 47.619 15.40 9.21 41.41 3.35
4728 5026 1.388547 AGGCAACAAAAACGAGCTCA 58.611 45.000 15.40 0.00 41.41 4.26
4729 5027 2.033424 AGAAGGCAACAAAAACGAGCTC 59.967 45.455 2.73 2.73 41.41 4.09
4730 5028 2.024414 AGAAGGCAACAAAAACGAGCT 58.976 42.857 0.00 0.00 41.41 4.09
4731 5029 2.033424 AGAGAAGGCAACAAAAACGAGC 59.967 45.455 0.00 0.00 41.41 5.03
4732 5030 3.621794 CAGAGAAGGCAACAAAAACGAG 58.378 45.455 0.00 0.00 41.41 4.18
4733 5031 2.223479 GCAGAGAAGGCAACAAAAACGA 60.223 45.455 0.00 0.00 41.41 3.85
4734 5032 2.119457 GCAGAGAAGGCAACAAAAACG 58.881 47.619 0.00 0.00 41.41 3.60
4735 5033 3.375642 GAGCAGAGAAGGCAACAAAAAC 58.624 45.455 0.00 0.00 41.41 2.43
4736 5034 2.362077 GGAGCAGAGAAGGCAACAAAAA 59.638 45.455 0.00 0.00 41.41 1.94
4737 5035 1.956477 GGAGCAGAGAAGGCAACAAAA 59.044 47.619 0.00 0.00 41.41 2.44
4738 5036 1.609208 GGAGCAGAGAAGGCAACAAA 58.391 50.000 0.00 0.00 41.41 2.83
4739 5037 0.603707 CGGAGCAGAGAAGGCAACAA 60.604 55.000 0.00 0.00 41.41 2.83
4740 5038 1.004560 CGGAGCAGAGAAGGCAACA 60.005 57.895 0.00 0.00 41.41 3.33
4741 5039 3.882025 CGGAGCAGAGAAGGCAAC 58.118 61.111 0.00 0.00 0.00 4.17
4754 5052 0.240945 AGGAAAAATGTTGCGCGGAG 59.759 50.000 8.83 0.00 0.00 4.63
4755 5053 0.239879 GAGGAAAAATGTTGCGCGGA 59.760 50.000 8.83 0.00 0.00 5.54
4756 5054 0.732538 GGAGGAAAAATGTTGCGCGG 60.733 55.000 8.83 0.00 0.00 6.46
4757 5055 0.039617 TGGAGGAAAAATGTTGCGCG 60.040 50.000 0.00 0.00 0.00 6.86
4758 5056 2.368655 ATGGAGGAAAAATGTTGCGC 57.631 45.000 0.00 0.00 0.00 6.09
4759 5057 4.963276 TCTATGGAGGAAAAATGTTGCG 57.037 40.909 0.00 0.00 0.00 4.85
4760 5058 5.360714 TGGATCTATGGAGGAAAAATGTTGC 59.639 40.000 0.00 0.00 0.00 4.17
4761 5059 7.286087 TCATGGATCTATGGAGGAAAAATGTTG 59.714 37.037 17.95 0.00 0.00 3.33
4762 5060 7.356680 TCATGGATCTATGGAGGAAAAATGTT 58.643 34.615 17.95 0.00 0.00 2.71
4763 5061 6.914665 TCATGGATCTATGGAGGAAAAATGT 58.085 36.000 17.95 0.00 0.00 2.71
4764 5062 7.229308 TCTCATGGATCTATGGAGGAAAAATG 58.771 38.462 17.95 0.00 0.00 2.32
4765 5063 7.398289 TCTCATGGATCTATGGAGGAAAAAT 57.602 36.000 17.95 0.00 0.00 1.82
4766 5064 6.183361 CCTCTCATGGATCTATGGAGGAAAAA 60.183 42.308 31.23 10.21 42.22 1.94
4767 5065 5.309020 CCTCTCATGGATCTATGGAGGAAAA 59.691 44.000 31.23 10.77 42.22 2.29
4768 5066 4.842948 CCTCTCATGGATCTATGGAGGAAA 59.157 45.833 31.23 11.31 42.22 3.13
4769 5067 4.423913 CCTCTCATGGATCTATGGAGGAA 58.576 47.826 31.23 11.86 42.22 3.36
4770 5068 3.245911 CCCTCTCATGGATCTATGGAGGA 60.246 52.174 33.75 22.42 42.22 3.71
4771 5069 3.106054 CCCTCTCATGGATCTATGGAGG 58.894 54.545 29.65 29.65 40.91 4.30
4772 5070 3.106054 CCCCTCTCATGGATCTATGGAG 58.894 54.545 17.95 19.65 0.00 3.86
4773 5071 2.456340 ACCCCTCTCATGGATCTATGGA 59.544 50.000 17.95 12.87 0.00 3.41
4774 5072 2.570752 CACCCCTCTCATGGATCTATGG 59.429 54.545 17.95 9.60 0.00 2.74
4775 5073 3.514539 TCACCCCTCTCATGGATCTATG 58.485 50.000 12.62 12.62 0.00 2.23
4776 5074 3.788933 CTCACCCCTCTCATGGATCTAT 58.211 50.000 0.00 0.00 0.00 1.98
4777 5075 2.757950 GCTCACCCCTCTCATGGATCTA 60.758 54.545 0.00 0.00 0.00 1.98
4778 5076 2.039070 GCTCACCCCTCTCATGGATCT 61.039 57.143 0.00 0.00 0.00 2.75
4779 5077 0.396060 GCTCACCCCTCTCATGGATC 59.604 60.000 0.00 0.00 0.00 3.36
4780 5078 0.030297 AGCTCACCCCTCTCATGGAT 60.030 55.000 0.00 0.00 0.00 3.41
4781 5079 0.689080 GAGCTCACCCCTCTCATGGA 60.689 60.000 9.40 0.00 0.00 3.41
4782 5080 1.828768 GAGCTCACCCCTCTCATGG 59.171 63.158 9.40 0.00 0.00 3.66
4783 5081 1.326213 ACGAGCTCACCCCTCTCATG 61.326 60.000 15.40 0.00 0.00 3.07
4784 5082 1.000993 ACGAGCTCACCCCTCTCAT 59.999 57.895 15.40 0.00 0.00 2.90
4785 5083 1.679305 GACGAGCTCACCCCTCTCA 60.679 63.158 15.40 0.00 0.00 3.27
4786 5084 2.419739 GGACGAGCTCACCCCTCTC 61.420 68.421 15.40 0.00 0.00 3.20
4787 5085 2.363147 GGACGAGCTCACCCCTCT 60.363 66.667 15.40 0.00 0.00 3.69
4788 5086 3.827898 CGGACGAGCTCACCCCTC 61.828 72.222 15.40 0.00 0.00 4.30
4789 5087 4.680537 ACGGACGAGCTCACCCCT 62.681 66.667 15.40 0.95 0.00 4.79
4790 5088 4.436998 CACGGACGAGCTCACCCC 62.437 72.222 15.40 10.03 0.00 4.95
4792 5090 3.575351 AAGCACGGACGAGCTCACC 62.575 63.158 16.30 14.95 40.95 4.02
4793 5091 1.222115 AAAAGCACGGACGAGCTCAC 61.222 55.000 16.30 6.95 40.95 3.51
4794 5092 0.531974 AAAAAGCACGGACGAGCTCA 60.532 50.000 16.30 0.00 40.95 4.26
4795 5093 2.235546 AAAAAGCACGGACGAGCTC 58.764 52.632 16.30 2.73 40.95 4.09
4796 5094 4.456806 AAAAAGCACGGACGAGCT 57.543 50.000 10.73 10.73 43.49 4.09
4821 5119 3.581024 GCACATGGCATGAGAGAAAAA 57.419 42.857 32.74 0.00 43.97 1.94
4857 5155 1.318158 GCTTGAGCCCAACCTCATGG 61.318 60.000 0.00 0.00 41.18 3.66
4858 5156 0.609957 TGCTTGAGCCCAACCTCATG 60.610 55.000 0.00 0.00 41.18 3.07
4859 5157 0.610232 GTGCTTGAGCCCAACCTCAT 60.610 55.000 0.00 0.00 41.18 2.90
4860 5158 1.228245 GTGCTTGAGCCCAACCTCA 60.228 57.895 0.00 0.00 39.94 3.86
4861 5159 0.823356 TTGTGCTTGAGCCCAACCTC 60.823 55.000 0.00 0.00 41.18 3.85
4862 5160 0.825010 CTTGTGCTTGAGCCCAACCT 60.825 55.000 0.00 0.00 41.18 3.50
4863 5161 0.823356 TCTTGTGCTTGAGCCCAACC 60.823 55.000 0.00 0.00 41.18 3.77
4864 5162 1.251251 ATCTTGTGCTTGAGCCCAAC 58.749 50.000 0.00 0.00 41.18 3.77
4865 5163 1.614903 CAATCTTGTGCTTGAGCCCAA 59.385 47.619 0.00 0.53 41.18 4.12
4866 5164 1.202915 TCAATCTTGTGCTTGAGCCCA 60.203 47.619 0.00 0.00 41.18 5.36
4867 5165 1.538047 TCAATCTTGTGCTTGAGCCC 58.462 50.000 0.00 0.00 41.18 5.19
4868 5166 2.490903 ACATCAATCTTGTGCTTGAGCC 59.509 45.455 0.00 0.00 41.18 4.70
4869 5167 3.844577 ACATCAATCTTGTGCTTGAGC 57.155 42.857 0.00 0.00 42.50 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.