Multiple sequence alignment - TraesCS3B01G258300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G258300 chr3B 100.000 7082 0 0 1 7082 416123516 416130597 0.000000e+00 13079.0
1 TraesCS3B01G258300 chr3B 79.130 345 54 7 1 329 207475907 207475565 9.250000e-54 222.0
2 TraesCS3B01G258300 chr3B 75.335 373 47 24 1 335 647985335 647984970 3.450000e-28 137.0
3 TraesCS3B01G258300 chr3D 95.127 3735 142 27 642 4365 305633482 305629777 0.000000e+00 5853.0
4 TraesCS3B01G258300 chr3D 90.598 1957 102 24 4479 6417 305629769 305627877 0.000000e+00 2519.0
5 TraesCS3B01G258300 chr3D 90.845 284 22 4 1 282 305636346 305636065 1.860000e-100 377.0
6 TraesCS3B01G258300 chr3D 97.087 103 2 1 4370 4472 462197510 462197409 9.440000e-39 172.0
7 TraesCS3B01G258300 chr3D 96.000 100 3 1 4370 4468 438431028 438430929 2.040000e-35 161.0
8 TraesCS3B01G258300 chr3D 75.542 323 44 16 49 336 485317676 485317354 7.460000e-25 126.0
9 TraesCS3B01G258300 chr3D 79.048 105 18 4 234 335 601952680 601952783 1.270000e-07 69.4
10 TraesCS3B01G258300 chr3A 96.633 1693 46 4 2666 4354 423680519 423678834 0.000000e+00 2800.0
11 TraesCS3B01G258300 chr3A 94.581 1550 49 8 753 2301 423682837 423681322 0.000000e+00 2364.0
12 TraesCS3B01G258300 chr3A 97.042 1251 26 5 4468 5707 423678543 423677293 0.000000e+00 2095.0
13 TraesCS3B01G258300 chr3A 89.519 582 27 12 5930 6500 423677251 423676693 0.000000e+00 706.0
14 TraesCS3B01G258300 chr3A 94.724 417 21 1 2400 2815 423680966 423680550 0.000000e+00 647.0
15 TraesCS3B01G258300 chr3A 86.103 331 30 9 6752 7082 493135592 493135906 6.800000e-90 342.0
16 TraesCS3B01G258300 chr3A 76.364 275 38 20 3 262 628237884 628237622 9.650000e-24 122.0
17 TraesCS3B01G258300 chr3A 88.571 70 5 3 642 710 423682914 423682847 1.640000e-11 82.4
18 TraesCS3B01G258300 chr1A 82.516 612 64 25 6503 7082 172789898 172790498 1.370000e-136 497.0
19 TraesCS3B01G258300 chr4B 92.145 331 17 3 6752 7082 474483212 474483533 6.470000e-125 459.0
20 TraesCS3B01G258300 chr4B 89.922 258 24 1 6502 6757 474482916 474483173 1.470000e-86 331.0
21 TraesCS3B01G258300 chr4B 84.470 264 31 7 6503 6757 117044570 117044308 1.180000e-62 252.0
22 TraesCS3B01G258300 chr4B 77.817 284 44 12 33 297 17100385 17100668 2.640000e-34 158.0
23 TraesCS3B01G258300 chr4B 88.983 118 13 0 4686 4803 550395836 550395719 5.720000e-31 147.0
24 TraesCS3B01G258300 chr1B 91.843 331 15 4 6752 7082 183876685 183876367 1.080000e-122 451.0
25 TraesCS3B01G258300 chr1B 90.310 258 23 1 6502 6757 183876981 183876724 3.160000e-88 337.0
26 TraesCS3B01G258300 chr1B 82.779 331 52 5 1 329 99689510 99689837 2.500000e-74 291.0
27 TraesCS3B01G258300 chr1B 92.920 113 6 2 4370 4480 476030756 476030868 5.680000e-36 163.0
28 TraesCS3B01G258300 chr1B 84.564 149 21 2 4655 4803 490003702 490003556 5.720000e-31 147.0
29 TraesCS3B01G258300 chr5D 84.226 336 39 8 3 334 494771150 494771475 1.480000e-81 315.0
30 TraesCS3B01G258300 chr5D 83.226 310 40 5 32 329 479446176 479446485 2.520000e-69 274.0
31 TraesCS3B01G258300 chr5D 90.141 71 6 1 265 334 467265407 467265477 2.720000e-14 91.6
32 TraesCS3B01G258300 chr7D 83.729 295 40 6 37 329 389001299 389001011 9.050000e-69 272.0
33 TraesCS3B01G258300 chr7D 96.226 106 3 1 4366 4470 60439696 60439591 9.440000e-39 172.0
34 TraesCS3B01G258300 chr5B 79.310 348 56 9 4 335 580114713 580114366 5.530000e-56 230.0
35 TraesCS3B01G258300 chr5B 93.277 119 7 1 4368 4485 411516781 411516899 2.630000e-39 174.0
36 TraesCS3B01G258300 chr5B 91.270 126 8 3 4371 4496 219816843 219816721 1.220000e-37 169.0
37 TraesCS3B01G258300 chr5B 91.071 56 2 3 4756 4810 480159647 480159700 9.850000e-09 73.1
38 TraesCS3B01G258300 chr5A 81.277 235 41 3 20 253 647392674 647392906 3.370000e-43 187.0
39 TraesCS3B01G258300 chr5A 89.474 114 12 0 4686 4799 640679548 640679435 2.060000e-30 145.0
40 TraesCS3B01G258300 chr5A 98.551 69 1 0 574 642 16585853 16585785 9.650000e-24 122.0
41 TraesCS3B01G258300 chr5A 87.013 77 7 3 260 333 633282376 633282452 4.550000e-12 84.2
42 TraesCS3B01G258300 chr6D 90.141 142 14 0 4659 4800 426058311 426058452 1.210000e-42 185.0
43 TraesCS3B01G258300 chr6B 89.041 146 15 1 4659 4803 641283671 641283816 5.640000e-41 180.0
44 TraesCS3B01G258300 chr6B 90.000 110 11 0 4662 4771 185678564 185678673 7.410000e-30 143.0
45 TraesCS3B01G258300 chr6B 78.981 157 32 1 45 200 416903705 416903861 9.720000e-19 106.0
46 TraesCS3B01G258300 chr2B 97.170 106 2 1 4366 4470 440223763 440223868 2.030000e-40 178.0
47 TraesCS3B01G258300 chr2B 97.222 72 2 0 571 642 3678190 3678261 9.650000e-24 122.0
48 TraesCS3B01G258300 chr2B 97.222 72 2 0 571 642 3706458 3706529 9.650000e-24 122.0
49 TraesCS3B01G258300 chr2B 76.562 128 17 8 6755 6882 233266306 233266420 2.760000e-04 58.4
50 TraesCS3B01G258300 chr1D 98.000 100 2 0 4367 4466 174151171 174151270 2.630000e-39 174.0
51 TraesCS3B01G258300 chr6A 94.495 109 6 0 4361 4469 12423679 12423571 1.220000e-37 169.0
52 TraesCS3B01G258300 chr6A 85.106 141 17 4 4662 4800 536215104 536214966 2.660000e-29 141.0
53 TraesCS3B01G258300 chrUn 97.222 72 2 0 571 642 355126646 355126717 9.650000e-24 122.0
54 TraesCS3B01G258300 chrUn 97.101 69 2 0 574 642 45109920 45109852 4.490000e-22 117.0
55 TraesCS3B01G258300 chrUn 95.833 72 3 0 571 642 45129369 45129440 4.490000e-22 117.0
56 TraesCS3B01G258300 chrUn 95.833 72 3 0 571 642 86496494 86496565 4.490000e-22 117.0
57 TraesCS3B01G258300 chrUn 97.101 69 2 0 574 642 171026127 171026059 4.490000e-22 117.0
58 TraesCS3B01G258300 chr2D 96.000 75 2 1 568 642 492143709 492143636 3.470000e-23 121.0
59 TraesCS3B01G258300 chr7B 87.671 73 5 4 260 329 79727020 79727091 1.640000e-11 82.4
60 TraesCS3B01G258300 chr7A 80.583 103 9 5 4661 4752 369470333 369470231 1.270000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G258300 chr3B 416123516 416130597 7081 False 13079.000000 13079 100.000000 1 7082 1 chr3B.!!$F1 7081
1 TraesCS3B01G258300 chr3D 305627877 305636346 8469 True 2916.333333 5853 92.190000 1 6417 3 chr3D.!!$R4 6416
2 TraesCS3B01G258300 chr3A 423676693 423682914 6221 True 1449.066667 2800 93.511667 642 6500 6 chr3A.!!$R2 5858
3 TraesCS3B01G258300 chr1A 172789898 172790498 600 False 497.000000 497 82.516000 6503 7082 1 chr1A.!!$F1 579
4 TraesCS3B01G258300 chr4B 474482916 474483533 617 False 395.000000 459 91.033500 6502 7082 2 chr4B.!!$F2 580
5 TraesCS3B01G258300 chr1B 183876367 183876981 614 True 394.000000 451 91.076500 6502 7082 2 chr1B.!!$R2 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
280 282 0.101579 GACAAGGAGGTAGAGCTCGC 59.898 60.000 8.37 5.41 0.00 5.03 F
334 336 0.179081 GACACGAGCAAGATACCCCC 60.179 60.000 0.00 0.00 0.00 5.40 F
572 2997 0.322997 AAACAAATGGATCGGCCGGA 60.323 50.000 27.83 12.89 40.66 5.14 F
589 3014 0.393820 GGACCGTTAGTGGTGGTTCA 59.606 55.000 0.00 0.00 44.01 3.18 F
765 3200 0.402504 AAGGGGTGCGTGTCCATTTA 59.597 50.000 0.00 0.00 0.00 1.40 F
1436 3874 1.134367 GCACGATCAGCCAGTACTGTA 59.866 52.381 21.18 4.69 38.84 2.74 F
2053 4493 1.553248 TCAAGGTACTGGGACATTCGG 59.447 52.381 0.00 0.00 40.86 4.30 F
3799 6684 1.729517 CGCGTTGGTGTTCATCATGTA 59.270 47.619 0.00 0.00 0.00 2.29 F
5048 8221 0.394565 ATGCGGTAGGCCATCTCTTC 59.605 55.000 5.01 0.00 42.61 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2053 4493 1.098050 CATGAGCTGGGTTAGGTTGC 58.902 55.000 0.00 0.00 37.23 4.17 R
2216 4656 2.679837 CAACTCCACTGCATCCATGTAC 59.320 50.000 0.00 0.00 0.00 2.90 R
2343 4783 1.628846 AGTGACGTTAGGGAAAGCCAT 59.371 47.619 0.00 0.00 35.15 4.40 R
2377 4817 4.046286 ACAGTGAAAATAGCATTGGGGA 57.954 40.909 0.00 0.00 0.00 4.81 R
2692 5389 4.214986 TGTTCATCAGGCGAGGAATAAA 57.785 40.909 8.98 0.00 43.28 1.40 R
3361 6245 3.252701 GTGATGATGCATCCAGGACAATC 59.747 47.826 23.67 16.92 39.87 2.67 R
4035 6920 5.627182 AATTGCTGATCATAGGACAGTCT 57.373 39.130 0.00 0.00 34.60 3.24 R
5393 8568 2.648613 TTTGTCCCCGCCACACCAAT 62.649 55.000 0.00 0.00 0.00 3.16 R
6976 10224 0.110678 TCTCCGTGTCAGACCTGAGT 59.889 55.000 0.00 0.00 40.75 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 20 2.272923 GCGGCCCAAAAATAGGTGT 58.727 52.632 0.00 0.00 0.00 4.16
45 47 0.243907 CATCAGTCGTCGACCCAAGT 59.756 55.000 21.40 0.00 32.18 3.16
46 48 0.243907 ATCAGTCGTCGACCCAAGTG 59.756 55.000 21.40 12.79 32.18 3.16
85 87 5.185828 CCAAGGAGGAAGACCAATTTTAAGG 59.814 44.000 0.00 0.00 41.22 2.69
97 99 5.071653 ACCAATTTTAAGGTGGATGCAAAGT 59.928 36.000 7.84 0.00 36.60 2.66
101 103 1.331214 AAGGTGGATGCAAAGTGTGG 58.669 50.000 0.00 0.00 0.00 4.17
104 106 0.318955 GTGGATGCAAAGTGTGGTGC 60.319 55.000 0.00 0.00 41.29 5.01
108 110 1.337703 GATGCAAAGTGTGGTGCTTCA 59.662 47.619 0.00 0.00 41.88 3.02
114 116 4.183101 CAAAGTGTGGTGCTTCAACAATT 58.817 39.130 0.00 0.00 30.77 2.32
136 138 4.692228 TGCCTTGCAAGAAACTTTAAAGG 58.308 39.130 28.05 8.19 34.76 3.11
146 148 6.650427 AGAAACTTTAAAGGGGTTCATGAC 57.350 37.500 19.14 0.00 0.00 3.06
165 167 2.375509 GACCCAAAAGGAAGAGAGGGAA 59.624 50.000 0.00 0.00 39.60 3.97
167 169 4.183916 ACCCAAAAGGAAGAGAGGGAATA 58.816 43.478 0.00 0.00 39.60 1.75
175 177 5.849140 AGGAAGAGAGGGAATAGAGAAAGT 58.151 41.667 0.00 0.00 0.00 2.66
177 179 5.351948 AAGAGAGGGAATAGAGAAAGTGC 57.648 43.478 0.00 0.00 0.00 4.40
211 213 6.960542 AGAGGAGGAAATGAAGGTCTACTTTA 59.039 38.462 0.00 0.00 40.21 1.85
242 244 3.636679 AGGAGAAGGTCAAGATCGATGA 58.363 45.455 0.54 0.00 0.00 2.92
243 245 3.636300 AGGAGAAGGTCAAGATCGATGAG 59.364 47.826 0.54 0.00 0.00 2.90
244 246 3.243704 GGAGAAGGTCAAGATCGATGAGG 60.244 52.174 0.54 0.00 0.00 3.86
246 248 3.383185 AGAAGGTCAAGATCGATGAGGAC 59.617 47.826 0.54 7.00 0.00 3.85
247 249 2.739943 AGGTCAAGATCGATGAGGACA 58.260 47.619 0.54 0.00 0.00 4.02
248 250 3.099905 AGGTCAAGATCGATGAGGACAA 58.900 45.455 0.54 0.00 0.00 3.18
249 251 3.708631 AGGTCAAGATCGATGAGGACAAT 59.291 43.478 0.54 0.00 0.00 2.71
250 252 3.806521 GGTCAAGATCGATGAGGACAATG 59.193 47.826 0.54 0.00 0.00 2.82
251 253 3.247173 GTCAAGATCGATGAGGACAATGC 59.753 47.826 0.54 0.00 0.00 3.56
252 254 2.540265 AGATCGATGAGGACAATGCC 57.460 50.000 0.54 0.00 0.00 4.40
253 255 1.143305 GATCGATGAGGACAATGCCG 58.857 55.000 0.54 0.00 0.00 5.69
254 256 0.250038 ATCGATGAGGACAATGCCGG 60.250 55.000 0.00 0.00 0.00 6.13
259 261 0.109532 TGAGGACAATGCCGGTCAAA 59.890 50.000 1.90 0.00 37.00 2.69
272 274 2.038033 CCGGTCAAAAGACAAGGAGGTA 59.962 50.000 0.00 0.00 0.00 3.08
279 281 1.757682 AGACAAGGAGGTAGAGCTCG 58.242 55.000 8.37 0.00 0.00 5.03
280 282 0.101579 GACAAGGAGGTAGAGCTCGC 59.898 60.000 8.37 5.41 0.00 5.03
281 283 1.064946 CAAGGAGGTAGAGCTCGCG 59.935 63.158 8.37 0.00 0.00 5.87
282 284 2.776913 AAGGAGGTAGAGCTCGCGC 61.777 63.158 8.37 0.00 0.00 6.86
292 294 3.741029 AGCTCGCGCTAATCTTCAA 57.259 47.368 5.56 0.00 46.79 2.69
293 295 1.565305 AGCTCGCGCTAATCTTCAAG 58.435 50.000 5.56 0.00 46.79 3.02
294 296 0.579156 GCTCGCGCTAATCTTCAAGG 59.421 55.000 5.56 0.00 0.00 3.61
295 297 1.802880 GCTCGCGCTAATCTTCAAGGA 60.803 52.381 5.56 0.00 0.00 3.36
296 298 2.540515 CTCGCGCTAATCTTCAAGGAA 58.459 47.619 5.56 0.00 0.00 3.36
297 299 2.537625 CTCGCGCTAATCTTCAAGGAAG 59.462 50.000 5.56 0.00 40.65 3.46
298 300 2.094182 TCGCGCTAATCTTCAAGGAAGT 60.094 45.455 5.56 0.00 40.24 3.01
299 301 2.029728 CGCGCTAATCTTCAAGGAAGTG 59.970 50.000 5.56 0.00 40.24 3.16
300 302 2.352960 GCGCTAATCTTCAAGGAAGTGG 59.647 50.000 0.00 0.00 40.24 4.00
301 303 3.861840 CGCTAATCTTCAAGGAAGTGGA 58.138 45.455 5.94 0.00 40.24 4.02
302 304 3.868077 CGCTAATCTTCAAGGAAGTGGAG 59.132 47.826 5.94 3.60 40.24 3.86
303 305 4.382040 CGCTAATCTTCAAGGAAGTGGAGA 60.382 45.833 5.94 0.00 40.24 3.71
304 306 5.679601 GCTAATCTTCAAGGAAGTGGAGAT 58.320 41.667 5.94 0.00 44.40 2.75
305 307 5.757808 GCTAATCTTCAAGGAAGTGGAGATC 59.242 44.000 5.94 0.00 42.12 2.75
306 308 5.768980 AATCTTCAAGGAAGTGGAGATCA 57.231 39.130 5.94 0.00 42.12 2.92
307 309 5.972327 ATCTTCAAGGAAGTGGAGATCAT 57.028 39.130 5.94 0.00 39.28 2.45
308 310 5.095145 TCTTCAAGGAAGTGGAGATCATG 57.905 43.478 5.94 0.00 40.24 3.07
309 311 3.920231 TCAAGGAAGTGGAGATCATGG 57.080 47.619 0.00 0.00 0.00 3.66
310 312 2.092753 TCAAGGAAGTGGAGATCATGGC 60.093 50.000 0.00 0.00 0.00 4.40
311 313 0.467384 AGGAAGTGGAGATCATGGCG 59.533 55.000 0.00 0.00 0.00 5.69
312 314 0.533755 GGAAGTGGAGATCATGGCGG 60.534 60.000 0.00 0.00 0.00 6.13
313 315 1.153086 AAGTGGAGATCATGGCGGC 60.153 57.895 0.00 0.00 0.00 6.53
314 316 2.592861 GTGGAGATCATGGCGGCC 60.593 66.667 13.32 13.32 0.00 6.13
315 317 4.240103 TGGAGATCATGGCGGCCG 62.240 66.667 24.05 24.05 0.00 6.13
316 318 3.928779 GGAGATCATGGCGGCCGA 61.929 66.667 33.48 9.86 0.00 5.54
317 319 2.663188 GAGATCATGGCGGCCGAC 60.663 66.667 33.48 31.04 0.00 4.79
318 320 3.445518 GAGATCATGGCGGCCGACA 62.446 63.158 39.99 39.99 37.65 4.35
319 321 3.272334 GATCATGGCGGCCGACAC 61.272 66.667 40.88 21.44 35.10 3.67
327 329 4.717629 CGGCCGACACGAGCAAGA 62.718 66.667 24.07 0.00 0.00 3.02
328 330 2.125512 GGCCGACACGAGCAAGAT 60.126 61.111 0.00 0.00 0.00 2.40
329 331 1.141019 GGCCGACACGAGCAAGATA 59.859 57.895 0.00 0.00 0.00 1.98
330 332 1.146358 GGCCGACACGAGCAAGATAC 61.146 60.000 0.00 0.00 0.00 2.24
331 333 1.146358 GCCGACACGAGCAAGATACC 61.146 60.000 0.00 0.00 0.00 2.73
332 334 0.527817 CCGACACGAGCAAGATACCC 60.528 60.000 0.00 0.00 0.00 3.69
333 335 0.527817 CGACACGAGCAAGATACCCC 60.528 60.000 0.00 0.00 0.00 4.95
334 336 0.179081 GACACGAGCAAGATACCCCC 60.179 60.000 0.00 0.00 0.00 5.40
361 363 4.366684 CCCCCAAGCACCACCTCC 62.367 72.222 0.00 0.00 0.00 4.30
362 364 4.366684 CCCCAAGCACCACCTCCC 62.367 72.222 0.00 0.00 0.00 4.30
363 365 4.366684 CCCAAGCACCACCTCCCC 62.367 72.222 0.00 0.00 0.00 4.81
364 366 3.579302 CCAAGCACCACCTCCCCA 61.579 66.667 0.00 0.00 0.00 4.96
365 367 2.520458 CAAGCACCACCTCCCCAA 59.480 61.111 0.00 0.00 0.00 4.12
366 368 1.152567 CAAGCACCACCTCCCCAAA 60.153 57.895 0.00 0.00 0.00 3.28
367 369 1.153756 AAGCACCACCTCCCCAAAG 59.846 57.895 0.00 0.00 0.00 2.77
368 370 2.283173 GCACCACCTCCCCAAAGG 60.283 66.667 0.00 0.00 42.55 3.11
382 384 2.908688 CAAAGGTTTGGTTTGAGGGG 57.091 50.000 0.00 0.00 37.10 4.79
383 385 2.393646 CAAAGGTTTGGTTTGAGGGGA 58.606 47.619 0.00 0.00 37.10 4.81
384 386 2.769095 CAAAGGTTTGGTTTGAGGGGAA 59.231 45.455 0.00 0.00 37.10 3.97
385 387 2.381752 AGGTTTGGTTTGAGGGGAAG 57.618 50.000 0.00 0.00 0.00 3.46
386 388 0.679505 GGTTTGGTTTGAGGGGAAGC 59.320 55.000 0.00 0.00 0.00 3.86
387 389 1.408969 GTTTGGTTTGAGGGGAAGCA 58.591 50.000 0.00 0.00 33.16 3.91
388 390 1.760029 GTTTGGTTTGAGGGGAAGCAA 59.240 47.619 0.00 0.00 41.21 3.91
389 391 2.166907 TTGGTTTGAGGGGAAGCAAA 57.833 45.000 0.00 0.00 40.34 3.68
390 392 2.166907 TGGTTTGAGGGGAAGCAAAA 57.833 45.000 0.00 0.00 35.95 2.44
391 393 2.038659 TGGTTTGAGGGGAAGCAAAAG 58.961 47.619 0.00 0.00 35.95 2.27
392 394 2.039418 GGTTTGAGGGGAAGCAAAAGT 58.961 47.619 0.00 0.00 35.95 2.66
393 395 2.434336 GGTTTGAGGGGAAGCAAAAGTT 59.566 45.455 0.00 0.00 35.95 2.66
394 396 3.118408 GGTTTGAGGGGAAGCAAAAGTTT 60.118 43.478 0.00 0.00 35.95 2.66
395 397 3.817709 TTGAGGGGAAGCAAAAGTTTG 57.182 42.857 0.00 0.00 41.03 2.93
396 398 2.745968 TGAGGGGAAGCAAAAGTTTGT 58.254 42.857 5.71 0.00 40.24 2.83
397 399 2.693074 TGAGGGGAAGCAAAAGTTTGTC 59.307 45.455 5.71 0.00 40.24 3.18
398 400 2.035961 GAGGGGAAGCAAAAGTTTGTCC 59.964 50.000 5.71 5.49 40.24 4.02
399 401 1.760029 GGGGAAGCAAAAGTTTGTCCA 59.240 47.619 12.80 0.00 40.24 4.02
400 402 2.169561 GGGGAAGCAAAAGTTTGTCCAA 59.830 45.455 12.80 0.00 40.24 3.53
401 403 3.457234 GGGAAGCAAAAGTTTGTCCAAG 58.543 45.455 12.80 0.00 40.24 3.61
402 404 3.132111 GGGAAGCAAAAGTTTGTCCAAGA 59.868 43.478 12.80 0.00 40.24 3.02
403 405 4.112634 GGAAGCAAAAGTTTGTCCAAGAC 58.887 43.478 5.71 0.00 40.24 3.01
404 406 3.801114 AGCAAAAGTTTGTCCAAGACC 57.199 42.857 5.71 0.00 40.24 3.85
405 407 2.099098 AGCAAAAGTTTGTCCAAGACCG 59.901 45.455 5.71 0.00 40.24 4.79
406 408 2.098443 GCAAAAGTTTGTCCAAGACCGA 59.902 45.455 5.71 0.00 40.24 4.69
407 409 3.792124 GCAAAAGTTTGTCCAAGACCGAG 60.792 47.826 5.71 0.00 40.24 4.63
408 410 3.553828 AAAGTTTGTCCAAGACCGAGA 57.446 42.857 0.00 0.00 0.00 4.04
409 411 3.771577 AAGTTTGTCCAAGACCGAGAT 57.228 42.857 0.00 0.00 0.00 2.75
431 2833 3.126858 TGCGTGATCATCTTTTACTTGCC 59.873 43.478 0.00 0.00 0.00 4.52
433 2835 4.494855 GCGTGATCATCTTTTACTTGCCTC 60.495 45.833 0.00 0.00 0.00 4.70
482 2884 2.627945 TGAACTATGGTTGTGGCGATC 58.372 47.619 0.00 0.00 35.58 3.69
489 2891 1.243902 GGTTGTGGCGATCCTTTTGA 58.756 50.000 0.00 0.00 0.00 2.69
494 2896 1.097232 TGGCGATCCTTTTGATGCAG 58.903 50.000 0.00 0.00 32.41 4.41
498 2900 2.677836 GCGATCCTTTTGATGCAGTGTA 59.322 45.455 0.00 0.00 32.41 2.90
499 2901 3.242543 GCGATCCTTTTGATGCAGTGTAG 60.243 47.826 0.00 0.00 32.41 2.74
500 2902 3.935203 CGATCCTTTTGATGCAGTGTAGT 59.065 43.478 0.00 0.00 32.41 2.73
501 2903 5.109210 CGATCCTTTTGATGCAGTGTAGTA 58.891 41.667 0.00 0.00 32.41 1.82
520 2945 7.115520 GTGTAGTACATGCTATGTGATGATGAC 59.884 40.741 6.21 1.79 44.60 3.06
526 2951 8.040716 ACATGCTATGTGATGATGACAATATG 57.959 34.615 0.00 0.00 43.01 1.78
551 2976 8.356657 TGTTTGTTGAAAATAAATGACCGAGAT 58.643 29.630 0.00 0.00 39.12 2.75
552 2977 9.834628 GTTTGTTGAAAATAAATGACCGAGATA 57.165 29.630 0.00 0.00 39.12 1.98
563 2988 7.461182 AAATGACCGAGATAAAACAAATGGA 57.539 32.000 0.00 0.00 0.00 3.41
565 2990 6.677781 TGACCGAGATAAAACAAATGGATC 57.322 37.500 0.00 0.00 0.00 3.36
571 2996 0.530288 AAAACAAATGGATCGGCCGG 59.470 50.000 27.83 8.96 40.66 6.13
572 2997 0.322997 AAACAAATGGATCGGCCGGA 60.323 50.000 27.83 12.89 40.66 5.14
573 2998 1.029947 AACAAATGGATCGGCCGGAC 61.030 55.000 27.83 19.02 40.66 4.79
574 2999 2.186826 CAAATGGATCGGCCGGACC 61.187 63.158 27.83 26.94 40.66 4.46
584 3009 2.433664 GCCGGACCGTTAGTGGTG 60.434 66.667 13.94 0.00 44.01 4.17
585 3010 2.263540 CCGGACCGTTAGTGGTGG 59.736 66.667 13.94 0.00 44.01 4.61
586 3011 2.576832 CCGGACCGTTAGTGGTGGT 61.577 63.158 13.94 0.00 44.01 4.16
587 3012 1.368579 CGGACCGTTAGTGGTGGTT 59.631 57.895 5.48 0.00 44.01 3.67
588 3013 0.668401 CGGACCGTTAGTGGTGGTTC 60.668 60.000 5.48 0.00 44.01 3.62
589 3014 0.393820 GGACCGTTAGTGGTGGTTCA 59.606 55.000 0.00 0.00 44.01 3.18
590 3015 1.002773 GGACCGTTAGTGGTGGTTCAT 59.997 52.381 0.00 0.00 44.01 2.57
591 3016 2.551504 GGACCGTTAGTGGTGGTTCATT 60.552 50.000 0.00 0.00 44.01 2.57
592 3017 2.482721 GACCGTTAGTGGTGGTTCATTG 59.517 50.000 0.00 0.00 44.01 2.82
593 3018 1.199097 CCGTTAGTGGTGGTTCATTGC 59.801 52.381 0.00 0.00 0.00 3.56
594 3019 1.199097 CGTTAGTGGTGGTTCATTGCC 59.801 52.381 0.00 0.00 0.00 4.52
595 3020 2.514803 GTTAGTGGTGGTTCATTGCCT 58.485 47.619 0.00 0.00 0.00 4.75
596 3021 3.681593 GTTAGTGGTGGTTCATTGCCTA 58.318 45.455 0.00 0.00 0.00 3.93
597 3022 4.270008 GTTAGTGGTGGTTCATTGCCTAT 58.730 43.478 0.00 0.00 0.00 2.57
598 3023 5.433526 GTTAGTGGTGGTTCATTGCCTATA 58.566 41.667 0.00 0.00 0.00 1.31
599 3024 4.156455 AGTGGTGGTTCATTGCCTATAG 57.844 45.455 0.00 0.00 0.00 1.31
600 3025 3.523564 AGTGGTGGTTCATTGCCTATAGT 59.476 43.478 0.00 0.00 0.00 2.12
601 3026 3.627577 GTGGTGGTTCATTGCCTATAGTG 59.372 47.826 0.00 0.00 0.00 2.74
602 3027 3.265737 TGGTGGTTCATTGCCTATAGTGT 59.734 43.478 0.00 0.00 0.00 3.55
603 3028 4.263727 TGGTGGTTCATTGCCTATAGTGTT 60.264 41.667 0.00 0.00 0.00 3.32
604 3029 4.096382 GGTGGTTCATTGCCTATAGTGTTG 59.904 45.833 0.00 0.00 0.00 3.33
605 3030 4.700213 GTGGTTCATTGCCTATAGTGTTGT 59.300 41.667 0.00 0.00 0.00 3.32
606 3031 5.878116 GTGGTTCATTGCCTATAGTGTTGTA 59.122 40.000 0.00 0.00 0.00 2.41
607 3032 6.373216 GTGGTTCATTGCCTATAGTGTTGTAA 59.627 38.462 0.00 0.00 0.00 2.41
608 3033 7.067008 GTGGTTCATTGCCTATAGTGTTGTAAT 59.933 37.037 0.00 0.00 0.00 1.89
609 3034 7.282224 TGGTTCATTGCCTATAGTGTTGTAATC 59.718 37.037 0.00 0.00 0.00 1.75
610 3035 7.499232 GGTTCATTGCCTATAGTGTTGTAATCT 59.501 37.037 0.00 0.00 0.00 2.40
611 3036 8.338259 GTTCATTGCCTATAGTGTTGTAATCTG 58.662 37.037 0.00 0.00 0.00 2.90
612 3037 6.992123 TCATTGCCTATAGTGTTGTAATCTGG 59.008 38.462 0.00 0.00 0.00 3.86
613 3038 6.553953 TTGCCTATAGTGTTGTAATCTGGA 57.446 37.500 0.00 0.00 0.00 3.86
614 3039 6.553953 TGCCTATAGTGTTGTAATCTGGAA 57.446 37.500 0.00 0.00 0.00 3.53
615 3040 7.136822 TGCCTATAGTGTTGTAATCTGGAAT 57.863 36.000 0.00 0.00 0.00 3.01
616 3041 7.217200 TGCCTATAGTGTTGTAATCTGGAATC 58.783 38.462 0.00 0.00 0.00 2.52
617 3042 6.651225 GCCTATAGTGTTGTAATCTGGAATCC 59.349 42.308 0.00 0.00 0.00 3.01
618 3043 7.689313 GCCTATAGTGTTGTAATCTGGAATCCA 60.689 40.741 0.48 0.48 0.00 3.41
619 3044 8.210946 CCTATAGTGTTGTAATCTGGAATCCAA 58.789 37.037 2.61 0.00 30.80 3.53
620 3045 9.613428 CTATAGTGTTGTAATCTGGAATCCAAA 57.387 33.333 2.61 0.00 30.80 3.28
622 3047 7.781324 AGTGTTGTAATCTGGAATCCAAATT 57.219 32.000 6.08 6.08 30.80 1.82
623 3048 8.193953 AGTGTTGTAATCTGGAATCCAAATTT 57.806 30.769 6.11 1.63 30.80 1.82
624 3049 8.650490 AGTGTTGTAATCTGGAATCCAAATTTT 58.350 29.630 6.11 0.00 30.80 1.82
625 3050 8.711457 GTGTTGTAATCTGGAATCCAAATTTTG 58.289 33.333 6.11 1.99 30.80 2.44
626 3051 8.428063 TGTTGTAATCTGGAATCCAAATTTTGT 58.572 29.630 6.11 0.00 30.80 2.83
627 3052 8.711457 GTTGTAATCTGGAATCCAAATTTTGTG 58.289 33.333 6.11 0.00 30.80 3.33
628 3053 8.187913 TGTAATCTGGAATCCAAATTTTGTGA 57.812 30.769 6.11 0.00 30.80 3.58
629 3054 8.814931 TGTAATCTGGAATCCAAATTTTGTGAT 58.185 29.630 6.11 0.00 30.80 3.06
632 3057 9.657419 AATCTGGAATCCAAATTTTGTGATAAC 57.343 29.630 2.61 7.51 30.80 1.89
633 3058 7.610865 TCTGGAATCCAAATTTTGTGATAACC 58.389 34.615 2.61 14.35 30.80 2.85
634 3059 6.393990 TGGAATCCAAATTTTGTGATAACCG 58.606 36.000 0.00 0.00 0.00 4.44
635 3060 6.015010 TGGAATCCAAATTTTGTGATAACCGT 60.015 34.615 0.00 0.00 0.00 4.83
636 3061 6.310224 GGAATCCAAATTTTGTGATAACCGTG 59.690 38.462 8.26 0.00 0.00 4.94
637 3062 5.776173 TCCAAATTTTGTGATAACCGTGT 57.224 34.783 8.26 0.00 0.00 4.49
638 3063 6.150396 TCCAAATTTTGTGATAACCGTGTT 57.850 33.333 8.26 0.00 0.00 3.32
639 3064 5.980116 TCCAAATTTTGTGATAACCGTGTTG 59.020 36.000 8.26 0.00 0.00 3.33
640 3065 5.751028 CCAAATTTTGTGATAACCGTGTTGT 59.249 36.000 8.26 0.00 0.00 3.32
672 3097 1.002624 GATTGGCGTGGACAAGGGA 60.003 57.895 0.00 0.00 32.43 4.20
681 3107 1.213619 TGGACAAGGGATGGATGCCA 61.214 55.000 0.00 0.00 41.29 4.92
710 3136 3.140623 TGGCTACCTAAACCGACAAAAC 58.859 45.455 0.00 0.00 0.00 2.43
712 3138 3.058708 GGCTACCTAAACCGACAAAACAC 60.059 47.826 0.00 0.00 0.00 3.32
714 3140 4.553351 GCTACCTAAACCGACAAAACACAC 60.553 45.833 0.00 0.00 0.00 3.82
715 3141 3.345414 ACCTAAACCGACAAAACACACA 58.655 40.909 0.00 0.00 0.00 3.72
716 3142 3.127376 ACCTAAACCGACAAAACACACAC 59.873 43.478 0.00 0.00 0.00 3.82
717 3143 3.127203 CCTAAACCGACAAAACACACACA 59.873 43.478 0.00 0.00 0.00 3.72
718 3144 2.622546 AACCGACAAAACACACACAC 57.377 45.000 0.00 0.00 0.00 3.82
719 3145 1.524848 ACCGACAAAACACACACACA 58.475 45.000 0.00 0.00 0.00 3.72
721 3147 1.197949 CCGACAAAACACACACACACA 59.802 47.619 0.00 0.00 0.00 3.72
722 3148 2.159448 CCGACAAAACACACACACACAT 60.159 45.455 0.00 0.00 0.00 3.21
723 3149 3.497118 CGACAAAACACACACACACATT 58.503 40.909 0.00 0.00 0.00 2.71
724 3150 3.300328 CGACAAAACACACACACACATTG 59.700 43.478 0.00 0.00 0.00 2.82
725 3151 2.992543 ACAAAACACACACACACATTGC 59.007 40.909 0.00 0.00 0.00 3.56
726 3152 1.906757 AAACACACACACACATTGCG 58.093 45.000 0.00 0.00 0.00 4.85
727 3153 0.808125 AACACACACACACATTGCGT 59.192 45.000 0.00 0.00 0.00 5.24
765 3200 0.402504 AAGGGGTGCGTGTCCATTTA 59.597 50.000 0.00 0.00 0.00 1.40
857 3293 3.222354 GACCACCTGCGAGTCGGTT 62.222 63.158 15.52 0.00 0.00 4.44
962 3398 3.711782 CCCCTTCCCTCCCTCCCT 61.712 72.222 0.00 0.00 0.00 4.20
963 3399 2.461637 CCCTTCCCTCCCTCCCTT 59.538 66.667 0.00 0.00 0.00 3.95
1221 3659 2.598787 CCCCAAGGCGAACCACCTA 61.599 63.158 0.00 0.00 36.14 3.08
1305 3743 4.557301 CGGATAATCGTTTTCTGTTTTGGC 59.443 41.667 0.00 0.00 0.00 4.52
1436 3874 1.134367 GCACGATCAGCCAGTACTGTA 59.866 52.381 21.18 4.69 38.84 2.74
1438 3876 2.423892 CACGATCAGCCAGTACTGTACT 59.576 50.000 21.18 14.53 40.28 2.73
1471 3909 9.851686 ATCATTTCCTTATATTAGCTCAACACA 57.148 29.630 0.00 0.00 0.00 3.72
1494 3932 7.490402 CACATGGATCTTCAATTTTAGCCTTTC 59.510 37.037 0.00 0.00 0.00 2.62
1532 3970 7.652105 GTCGCTCTGTCCATGTCTAAATTATTA 59.348 37.037 0.00 0.00 0.00 0.98
1533 3971 8.201464 TCGCTCTGTCCATGTCTAAATTATTAA 58.799 33.333 0.00 0.00 0.00 1.40
1768 4206 4.484537 AGACTCTGAGGTGATCAAATGG 57.515 45.455 9.85 0.00 37.52 3.16
1795 4233 7.424803 CACAAACCTCAAGTTACATTGATTCA 58.575 34.615 0.00 0.00 37.88 2.57
1832 4270 6.276847 TGCGACTCAAATATTTGGTGTTTTT 58.723 32.000 24.40 5.77 38.66 1.94
1874 4312 5.313520 TGTTGCATCATAACAGTGGATTG 57.686 39.130 0.00 0.00 33.43 2.67
1905 4343 5.163468 ACTGATGCAGTGTCCAGTTAGATAG 60.163 44.000 0.00 0.00 43.63 2.08
2053 4493 1.553248 TCAAGGTACTGGGACATTCGG 59.447 52.381 0.00 0.00 40.86 4.30
2216 4656 6.040247 TCTTTACGTTGTATATCTGGCTGTG 58.960 40.000 0.00 0.00 0.00 3.66
2253 4693 8.832521 CAGTGGAGTTGTACACACTTTATTTTA 58.167 33.333 12.73 0.00 41.85 1.52
2343 4783 7.711846 TGTTTAGTGTCCAAGTACGTAGTTTA 58.288 34.615 12.99 2.18 37.78 2.01
2359 4799 4.296621 AGTTTATGGCTTTCCCTAACGT 57.703 40.909 0.00 0.00 0.00 3.99
2360 4800 4.259356 AGTTTATGGCTTTCCCTAACGTC 58.741 43.478 0.00 0.00 0.00 4.34
2453 5150 5.457487 CCTGGTGGGCAGTTATCCATTATAA 60.457 44.000 0.00 0.00 35.28 0.98
2594 5291 8.950208 ATTTTCAAGGTTCGGAAAACAAATAA 57.050 26.923 0.00 0.00 43.42 1.40
2701 5398 2.156098 TGCGGTGTTGGTTTATTCCTC 58.844 47.619 0.00 0.00 0.00 3.71
2778 5658 4.037923 TGACAATTTCTTTCCTCAACCTGC 59.962 41.667 0.00 0.00 0.00 4.85
3076 5959 6.128145 GGTTCTTCCAGTGAATTTAGCTCTTC 60.128 42.308 0.00 0.00 35.97 2.87
3077 5960 5.491982 TCTTCCAGTGAATTTAGCTCTTCC 58.508 41.667 0.00 0.00 0.00 3.46
3078 5961 5.249393 TCTTCCAGTGAATTTAGCTCTTCCT 59.751 40.000 0.00 0.00 0.00 3.36
3079 5962 5.505181 TCCAGTGAATTTAGCTCTTCCTT 57.495 39.130 0.00 0.00 0.00 3.36
3080 5963 6.620877 TCCAGTGAATTTAGCTCTTCCTTA 57.379 37.500 0.00 0.00 0.00 2.69
3081 5964 7.200434 TCCAGTGAATTTAGCTCTTCCTTAT 57.800 36.000 0.00 0.00 0.00 1.73
3187 6071 2.137523 CTGCACAAGTTTGGCCATTTC 58.862 47.619 6.09 0.00 0.00 2.17
3284 6168 8.427774 GCATTCAGAAAAACAAGTAAATGCTAC 58.572 33.333 8.93 0.00 42.59 3.58
3361 6245 5.965334 GCTATGTTAATTGTGTCACCATTCG 59.035 40.000 5.60 0.00 0.00 3.34
3398 6283 6.208007 TGCATCATCACTCAATTTCTCTGTTT 59.792 34.615 0.00 0.00 0.00 2.83
3436 6321 3.181506 GCAGAAATTCCGCACTTTAGGAG 60.182 47.826 0.00 0.00 37.88 3.69
3576 6461 8.606040 ATGTTTTAAGTCCATGGATTTTGTTG 57.394 30.769 25.58 0.00 0.00 3.33
3705 6590 4.404715 TGTACTGGAGGTAGCAGATAAACC 59.595 45.833 0.00 0.00 0.00 3.27
3799 6684 1.729517 CGCGTTGGTGTTCATCATGTA 59.270 47.619 0.00 0.00 0.00 2.29
4007 6892 5.120674 TGCTTTCACTCACTATGAACATTCG 59.879 40.000 0.00 0.00 35.82 3.34
4035 6920 7.714813 TCGAATTCAAATATCTGAATACCTGCA 59.285 33.333 4.70 0.00 43.65 4.41
4038 6923 7.792374 TTCAAATATCTGAATACCTGCAGAC 57.208 36.000 17.39 1.71 43.26 3.51
4254 7140 3.202818 TCCCATTGTCTATTGGTGCAGAT 59.797 43.478 0.00 0.00 0.00 2.90
4265 7151 7.809806 GTCTATTGGTGCAGATTAATTAATGCC 59.190 37.037 15.39 8.89 0.00 4.40
4342 7228 3.598019 ATTTGTAATGCAACAGCTGGG 57.402 42.857 19.93 11.05 36.72 4.45
4379 7540 4.202245 TCTTTGTGAAATACTCCCTCCG 57.798 45.455 0.00 0.00 0.00 4.63
4380 7541 3.581332 TCTTTGTGAAATACTCCCTCCGT 59.419 43.478 0.00 0.00 0.00 4.69
4381 7542 4.041198 TCTTTGTGAAATACTCCCTCCGTT 59.959 41.667 0.00 0.00 0.00 4.44
4382 7543 3.604875 TGTGAAATACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
4383 7544 2.235402 TGTGAAATACTCCCTCCGTTCC 59.765 50.000 0.00 0.00 0.00 3.62
4384 7545 2.235402 GTGAAATACTCCCTCCGTTCCA 59.765 50.000 0.00 0.00 0.00 3.53
4385 7546 2.907696 TGAAATACTCCCTCCGTTCCAA 59.092 45.455 0.00 0.00 0.00 3.53
4386 7547 3.328343 TGAAATACTCCCTCCGTTCCAAA 59.672 43.478 0.00 0.00 0.00 3.28
4387 7548 4.202482 TGAAATACTCCCTCCGTTCCAAAA 60.202 41.667 0.00 0.00 0.00 2.44
4388 7549 4.586306 AATACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
4389 7550 5.703730 AATACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
4390 7551 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4391 7552 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4392 7553 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4393 7554 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4394 7555 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4395 7556 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4396 7557 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
4397 7558 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
4398 7559 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
4399 7560 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
4400 7561 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
4401 7562 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
4402 7563 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
4403 7564 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
4404 7565 8.076178 CGTTCCAAAATAGATGACTCAACTTTT 58.924 33.333 0.00 0.00 0.00 2.27
4405 7566 9.750125 GTTCCAAAATAGATGACTCAACTTTTT 57.250 29.630 0.00 0.00 0.00 1.94
4408 7569 9.626045 CCAAAATAGATGACTCAACTTTTTACC 57.374 33.333 5.55 0.00 0.00 2.85
4412 7573 9.574516 AATAGATGACTCAACTTTTTACCAACT 57.425 29.630 0.00 0.00 0.00 3.16
4413 7574 7.881775 AGATGACTCAACTTTTTACCAACTT 57.118 32.000 0.00 0.00 0.00 2.66
4414 7575 8.293699 AGATGACTCAACTTTTTACCAACTTT 57.706 30.769 0.00 0.00 0.00 2.66
4415 7576 9.403583 AGATGACTCAACTTTTTACCAACTTTA 57.596 29.630 0.00 0.00 0.00 1.85
4416 7577 9.665264 GATGACTCAACTTTTTACCAACTTTAG 57.335 33.333 0.00 0.00 0.00 1.85
4417 7578 8.570068 TGACTCAACTTTTTACCAACTTTAGT 57.430 30.769 0.00 0.00 0.00 2.24
4418 7579 9.669887 TGACTCAACTTTTTACCAACTTTAGTA 57.330 29.630 0.00 0.00 0.00 1.82
4419 7580 9.926751 GACTCAACTTTTTACCAACTTTAGTAC 57.073 33.333 0.00 0.00 0.00 2.73
4420 7581 9.452287 ACTCAACTTTTTACCAACTTTAGTACA 57.548 29.630 0.00 0.00 0.00 2.90
4441 7602 9.716531 AGTACAAAGTTAGTATAAAGTTGGGTC 57.283 33.333 0.00 0.00 0.00 4.46
4442 7603 9.492973 GTACAAAGTTAGTATAAAGTTGGGTCA 57.507 33.333 0.00 0.00 0.00 4.02
4444 7605 9.227777 ACAAAGTTAGTATAAAGTTGGGTCATC 57.772 33.333 0.00 0.00 0.00 2.92
4445 7606 9.449719 CAAAGTTAGTATAAAGTTGGGTCATCT 57.550 33.333 0.00 0.00 0.00 2.90
4452 7613 9.408648 AGTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 0.00 3.28
4453 7614 9.403583 GTATAAAGTTGGGTCATCTATTTTGGA 57.596 33.333 0.00 0.00 0.00 3.53
4454 7615 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
4455 7616 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
4456 7617 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
4457 7618 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
4458 7619 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
4459 7620 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
4460 7621 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
4461 7622 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4462 7623 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4463 7624 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
4464 7625 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
4465 7626 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
4466 7627 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
4467 7628 4.586306 ATTTTGGAACGGAGGGAGTATT 57.414 40.909 0.00 0.00 0.00 1.89
4468 7629 5.703730 ATTTTGGAACGGAGGGAGTATTA 57.296 39.130 0.00 0.00 0.00 0.98
4618 7779 1.001393 CCTTGTGTAACCCCGGCAT 60.001 57.895 0.00 0.00 34.36 4.40
4622 7783 2.361865 TGTAACCCCGGCATTGGC 60.362 61.111 0.00 0.00 40.13 4.52
4644 7805 4.275936 GCAGTGACAAGTTTACCATGAGTT 59.724 41.667 0.00 0.00 0.00 3.01
4645 7806 5.468746 GCAGTGACAAGTTTACCATGAGTTA 59.531 40.000 0.00 0.00 0.00 2.24
4738 7907 3.701241 CGCGTAAAATGGGCATAATTGT 58.299 40.909 0.00 0.00 0.00 2.71
4858 8027 2.746362 GCAAACAGAGAGACTTGGATGG 59.254 50.000 0.00 0.00 0.00 3.51
5003 8176 1.206132 CCCATCACATGCAGCACATTT 59.794 47.619 0.00 0.00 36.64 2.32
5048 8221 0.394565 ATGCGGTAGGCCATCTCTTC 59.605 55.000 5.01 0.00 42.61 2.87
5393 8568 7.497579 TGTCAAAAAGCAGTAGTCATTGACTAA 59.502 33.333 24.41 9.33 45.12 2.24
5463 8638 6.434340 AGTCTGTATTCTGACTGTCATGTACA 59.566 38.462 11.45 16.90 46.12 2.90
5707 8885 8.627487 TTGCAAGACACAATAAACTTTTACAG 57.373 30.769 0.00 0.00 0.00 2.74
5710 8899 9.166126 GCAAGACACAATAAACTTTTACAGTAC 57.834 33.333 0.00 0.00 32.94 2.73
5737 8926 7.944729 ATCTGCATTTCCTATGTAACAAAGT 57.055 32.000 0.00 0.00 0.00 2.66
5807 8996 5.916318 TCATGTTTCTTTGCCTGATTTGTT 58.084 33.333 0.00 0.00 0.00 2.83
5808 8997 7.048629 TCATGTTTCTTTGCCTGATTTGTTA 57.951 32.000 0.00 0.00 0.00 2.41
5809 8998 7.669427 TCATGTTTCTTTGCCTGATTTGTTAT 58.331 30.769 0.00 0.00 0.00 1.89
5872 9061 9.986157 ATATATATTTGTGCCTCATTCTGGATT 57.014 29.630 0.00 0.00 0.00 3.01
5874 9063 9.812347 ATATATTTGTGCCTCATTCTGGATTAA 57.188 29.630 0.00 0.00 0.00 1.40
5875 9064 8.716674 ATATTTGTGCCTCATTCTGGATTAAT 57.283 30.769 0.00 0.00 0.00 1.40
5876 9065 6.455360 TTTGTGCCTCATTCTGGATTAATC 57.545 37.500 6.93 6.93 0.00 1.75
5956 9145 6.377996 CCCCTTTGAAAGATCACATAACATCA 59.622 38.462 6.49 0.00 34.61 3.07
5962 9151 8.564509 TGAAAGATCACATAACATCATCACAA 57.435 30.769 0.00 0.00 0.00 3.33
5970 9159 9.276590 TCACATAACATCATCACAATATCCTTC 57.723 33.333 0.00 0.00 0.00 3.46
6004 9195 7.497249 CCAGATATCTTTTGTTTAGTCCTCTGG 59.503 40.741 1.33 0.00 39.02 3.86
6014 9205 0.975040 AGTCCTCTGGCAATCGCTCT 60.975 55.000 0.00 0.00 38.60 4.09
6021 9212 2.497675 TCTGGCAATCGCTCTTTACTCT 59.502 45.455 0.00 0.00 38.60 3.24
6022 9213 3.055819 TCTGGCAATCGCTCTTTACTCTT 60.056 43.478 0.00 0.00 38.60 2.85
6133 9326 2.373938 GAACCTGATGAGTTCGCCG 58.626 57.895 0.00 0.00 34.76 6.46
6138 9331 2.202623 GATGAGTTCGCCGTCGCT 60.203 61.111 0.00 0.00 35.26 4.93
6153 9346 2.221055 CGTCGCTTGATGCTAATTACCC 59.779 50.000 0.00 0.00 40.11 3.69
6163 9356 1.738030 GCTAATTACCCGCACGAGTGT 60.738 52.381 5.07 0.00 0.00 3.55
6164 9357 2.613691 CTAATTACCCGCACGAGTGTT 58.386 47.619 5.07 0.00 0.00 3.32
6165 9358 1.886886 AATTACCCGCACGAGTGTTT 58.113 45.000 5.07 0.00 0.00 2.83
6166 9359 1.886886 ATTACCCGCACGAGTGTTTT 58.113 45.000 5.07 0.00 0.00 2.43
6167 9360 2.522836 TTACCCGCACGAGTGTTTTA 57.477 45.000 5.07 0.00 0.00 1.52
6168 9361 2.522836 TACCCGCACGAGTGTTTTAA 57.477 45.000 5.07 0.00 0.00 1.52
6169 9362 1.886886 ACCCGCACGAGTGTTTTAAT 58.113 45.000 5.07 0.00 0.00 1.40
6170 9363 1.802365 ACCCGCACGAGTGTTTTAATC 59.198 47.619 5.07 0.00 0.00 1.75
6218 9411 2.759535 TCCTTCATCTCTGAGACTGCAG 59.240 50.000 13.48 13.48 37.24 4.41
6221 9414 0.528033 CATCTCTGAGACTGCAGGCG 60.528 60.000 19.93 2.04 36.55 5.52
6235 9428 5.290386 ACTGCAGGCGTATCTTCTATAAAC 58.710 41.667 19.93 0.00 0.00 2.01
6253 9446 2.693797 ACAGCAGTTGCATTTCTTCG 57.306 45.000 6.90 0.00 45.16 3.79
6274 9468 2.680841 GCATGTAAATGGCAGGTCGTAA 59.319 45.455 0.00 0.00 0.00 3.18
6291 9485 5.178809 GGTCGTAATTTGTTGCTGTAGTTCT 59.821 40.000 0.00 0.00 0.00 3.01
6324 9518 1.937899 CAAGTTGGACGTCGGAGTTTT 59.062 47.619 9.92 0.00 0.00 2.43
6362 9556 6.831868 AGTTGAAGGACTACTTGGCTTTAAAA 59.168 34.615 0.00 0.00 40.21 1.52
6363 9557 7.505923 AGTTGAAGGACTACTTGGCTTTAAAAT 59.494 33.333 0.00 0.00 40.21 1.82
6365 9559 6.433093 TGAAGGACTACTTGGCTTTAAAATCC 59.567 38.462 0.00 0.00 40.21 3.01
6511 9713 2.374184 CAAATTGATGGGGTTCGGCTA 58.626 47.619 0.00 0.00 0.00 3.93
6519 9721 1.295423 GGGTTCGGCTACTCTGCAA 59.705 57.895 0.00 0.00 34.04 4.08
6536 9738 5.614308 TCTGCAATACAGCTATTACTGCAT 58.386 37.500 10.17 0.00 46.76 3.96
6559 9761 4.880164 AGGTACTGTAGGAAGCCAATCTA 58.120 43.478 0.00 0.00 37.18 1.98
6652 9854 4.082523 CAAGCTCGCCCCCTCGAA 62.083 66.667 0.00 0.00 38.08 3.71
6699 9901 1.339610 GATGCTCGTGTATCAGCTCCT 59.660 52.381 10.18 0.00 36.53 3.69
6738 9942 3.243101 GCTCATCTTCGTCTATTCGGACA 60.243 47.826 0.00 0.00 36.12 4.02
6742 9946 4.713824 TCTTCGTCTATTCGGACAACAT 57.286 40.909 0.00 0.00 36.12 2.71
6762 10010 4.937620 ACATGTCGACAACATCATTAAGCT 59.062 37.500 24.13 0.00 45.78 3.74
6768 10016 2.291800 ACAACATCATTAAGCTGCCCCT 60.292 45.455 0.00 0.00 0.00 4.79
6786 10034 1.447317 CTCCTGCGCCTCTCTCTCTC 61.447 65.000 4.18 0.00 0.00 3.20
6788 10036 1.037030 CCTGCGCCTCTCTCTCTCTT 61.037 60.000 4.18 0.00 0.00 2.85
6789 10037 0.381801 CTGCGCCTCTCTCTCTCTTC 59.618 60.000 4.18 0.00 0.00 2.87
6887 10135 1.599047 CTCCGACCAGTGGCTCAAT 59.401 57.895 9.78 0.00 0.00 2.57
6905 10153 1.902818 ATGGCCCCTACCTGAGGTCT 61.903 60.000 7.77 0.00 45.03 3.85
6906 10154 2.066999 GGCCCCTACCTGAGGTCTG 61.067 68.421 7.77 2.03 45.03 3.51
6907 10155 1.001760 GCCCCTACCTGAGGTCTGA 59.998 63.158 7.77 0.00 45.03 3.27
6908 10156 1.045911 GCCCCTACCTGAGGTCTGAG 61.046 65.000 7.77 0.00 45.03 3.35
6909 10157 0.397816 CCCCTACCTGAGGTCTGAGG 60.398 65.000 7.77 9.97 45.03 3.86
6911 10159 1.686741 CCCTACCTGAGGTCTGAGGTC 60.687 61.905 7.77 0.00 43.90 3.85
6917 10165 2.358090 CCTGAGGTCTGAGGTCTCATCT 60.358 54.545 0.75 0.68 39.13 2.90
6937 10185 1.739338 ATCGTCTCGGAGGTCATGGC 61.739 60.000 4.96 0.00 0.00 4.40
6976 10224 1.301401 CAAACTCCGACGAGCCCAA 60.301 57.895 0.00 0.00 40.03 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 14 0.982852 CTGATGAGGCCCCACACCTA 60.983 60.000 0.00 0.00 37.77 3.08
15 17 1.078143 GACTGATGAGGCCCCACAC 60.078 63.158 0.00 0.00 0.00 3.82
18 20 2.284625 ACGACTGATGAGGCCCCA 60.285 61.111 0.00 0.00 0.00 4.96
45 47 2.224621 CCTTGGCCTCTTCTCACTTTCA 60.225 50.000 3.32 0.00 0.00 2.69
46 48 2.039084 TCCTTGGCCTCTTCTCACTTTC 59.961 50.000 3.32 0.00 0.00 2.62
85 87 0.318955 GCACCACACTTTGCATCCAC 60.319 55.000 0.00 0.00 38.68 4.02
97 99 1.202510 GGCAATTGTTGAAGCACCACA 60.203 47.619 7.40 0.00 0.00 4.17
101 103 1.528161 GCAAGGCAATTGTTGAAGCAC 59.472 47.619 11.79 0.00 41.29 4.40
114 116 4.442753 CCCTTTAAAGTTTCTTGCAAGGCA 60.443 41.667 25.73 10.70 36.47 4.75
146 148 3.746792 ATTCCCTCTCTTCCTTTTGGG 57.253 47.619 0.00 0.00 40.87 4.12
165 167 6.432472 CCTCTTTCTTTTGGCACTTTCTCTAT 59.568 38.462 0.00 0.00 0.00 1.98
167 169 4.582240 CCTCTTTCTTTTGGCACTTTCTCT 59.418 41.667 0.00 0.00 0.00 3.10
175 177 3.593442 TTCCTCCTCTTTCTTTTGGCA 57.407 42.857 0.00 0.00 0.00 4.92
177 179 6.294955 CCTTCATTTCCTCCTCTTTCTTTTGG 60.295 42.308 0.00 0.00 0.00 3.28
211 213 9.620259 GATCTTGACCTTCTCCTTTTATATGTT 57.380 33.333 0.00 0.00 0.00 2.71
229 231 3.247173 GCATTGTCCTCATCGATCTTGAC 59.753 47.826 0.00 2.85 0.00 3.18
242 244 1.202879 TCTTTTGACCGGCATTGTCCT 60.203 47.619 0.00 0.00 31.60 3.85
243 245 1.068541 GTCTTTTGACCGGCATTGTCC 60.069 52.381 0.00 0.00 43.37 4.02
244 246 2.331809 GTCTTTTGACCGGCATTGTC 57.668 50.000 0.00 0.00 43.37 3.18
259 261 2.096248 CGAGCTCTACCTCCTTGTCTT 58.904 52.381 12.85 0.00 0.00 3.01
279 281 2.352960 CCACTTCCTTGAAGATTAGCGC 59.647 50.000 10.62 0.00 41.71 5.92
280 282 3.861840 TCCACTTCCTTGAAGATTAGCG 58.138 45.455 10.62 0.00 41.71 4.26
281 283 5.091261 TCTCCACTTCCTTGAAGATTAGC 57.909 43.478 10.62 0.00 41.71 3.09
282 284 6.882656 TGATCTCCACTTCCTTGAAGATTAG 58.117 40.000 10.62 4.82 41.71 1.73
283 285 6.874278 TGATCTCCACTTCCTTGAAGATTA 57.126 37.500 10.62 0.00 41.71 1.75
284 286 5.768980 TGATCTCCACTTCCTTGAAGATT 57.231 39.130 10.62 0.00 41.71 2.40
285 287 5.397672 CCATGATCTCCACTTCCTTGAAGAT 60.398 44.000 10.62 0.00 41.71 2.40
286 288 4.080695 CCATGATCTCCACTTCCTTGAAGA 60.081 45.833 10.62 0.00 41.71 2.87
287 289 4.197750 CCATGATCTCCACTTCCTTGAAG 58.802 47.826 0.00 2.40 44.37 3.02
288 290 3.623203 GCCATGATCTCCACTTCCTTGAA 60.623 47.826 0.00 0.00 0.00 2.69
289 291 2.092753 GCCATGATCTCCACTTCCTTGA 60.093 50.000 0.00 0.00 0.00 3.02
290 292 2.295885 GCCATGATCTCCACTTCCTTG 58.704 52.381 0.00 0.00 0.00 3.61
291 293 1.134280 CGCCATGATCTCCACTTCCTT 60.134 52.381 0.00 0.00 0.00 3.36
292 294 0.467384 CGCCATGATCTCCACTTCCT 59.533 55.000 0.00 0.00 0.00 3.36
293 295 0.533755 CCGCCATGATCTCCACTTCC 60.534 60.000 0.00 0.00 0.00 3.46
294 296 1.162800 GCCGCCATGATCTCCACTTC 61.163 60.000 0.00 0.00 0.00 3.01
295 297 1.153086 GCCGCCATGATCTCCACTT 60.153 57.895 0.00 0.00 0.00 3.16
296 298 2.507944 GCCGCCATGATCTCCACT 59.492 61.111 0.00 0.00 0.00 4.00
297 299 2.592861 GGCCGCCATGATCTCCAC 60.593 66.667 3.91 0.00 0.00 4.02
298 300 4.240103 CGGCCGCCATGATCTCCA 62.240 66.667 14.67 0.00 0.00 3.86
299 301 3.928779 TCGGCCGCCATGATCTCC 61.929 66.667 23.51 0.00 0.00 3.71
300 302 2.663188 GTCGGCCGCCATGATCTC 60.663 66.667 23.51 0.00 0.00 2.75
301 303 3.469970 TGTCGGCCGCCATGATCT 61.470 61.111 23.51 0.00 0.00 2.75
302 304 3.272334 GTGTCGGCCGCCATGATC 61.272 66.667 23.51 0.00 0.00 2.92
310 312 2.607668 TATCTTGCTCGTGTCGGCCG 62.608 60.000 22.12 22.12 0.00 6.13
311 313 1.141019 TATCTTGCTCGTGTCGGCC 59.859 57.895 0.00 0.00 0.00 6.13
312 314 1.146358 GGTATCTTGCTCGTGTCGGC 61.146 60.000 0.00 0.00 0.00 5.54
313 315 0.527817 GGGTATCTTGCTCGTGTCGG 60.528 60.000 0.00 0.00 0.00 4.79
314 316 0.527817 GGGGTATCTTGCTCGTGTCG 60.528 60.000 0.00 0.00 0.00 4.35
315 317 0.179081 GGGGGTATCTTGCTCGTGTC 60.179 60.000 0.00 0.00 0.00 3.67
316 318 1.905512 GGGGGTATCTTGCTCGTGT 59.094 57.895 0.00 0.00 0.00 4.49
317 319 4.857251 GGGGGTATCTTGCTCGTG 57.143 61.111 0.00 0.00 0.00 4.35
344 346 4.366684 GGAGGTGGTGCTTGGGGG 62.367 72.222 0.00 0.00 0.00 5.40
345 347 4.366684 GGGAGGTGGTGCTTGGGG 62.367 72.222 0.00 0.00 0.00 4.96
346 348 4.366684 GGGGAGGTGGTGCTTGGG 62.367 72.222 0.00 0.00 0.00 4.12
347 349 2.655077 TTTGGGGAGGTGGTGCTTGG 62.655 60.000 0.00 0.00 0.00 3.61
348 350 1.152567 TTTGGGGAGGTGGTGCTTG 60.153 57.895 0.00 0.00 0.00 4.01
349 351 1.153756 CTTTGGGGAGGTGGTGCTT 59.846 57.895 0.00 0.00 0.00 3.91
350 352 2.845345 CCTTTGGGGAGGTGGTGCT 61.845 63.158 0.00 0.00 37.23 4.40
351 353 2.283173 CCTTTGGGGAGGTGGTGC 60.283 66.667 0.00 0.00 37.23 5.01
363 365 2.393646 TCCCCTCAAACCAAACCTTTG 58.606 47.619 0.00 0.00 37.90 2.77
364 366 2.858787 TCCCCTCAAACCAAACCTTT 57.141 45.000 0.00 0.00 0.00 3.11
365 367 2.677914 CTTCCCCTCAAACCAAACCTT 58.322 47.619 0.00 0.00 0.00 3.50
366 368 1.757764 GCTTCCCCTCAAACCAAACCT 60.758 52.381 0.00 0.00 0.00 3.50
367 369 0.679505 GCTTCCCCTCAAACCAAACC 59.320 55.000 0.00 0.00 0.00 3.27
368 370 1.408969 TGCTTCCCCTCAAACCAAAC 58.591 50.000 0.00 0.00 0.00 2.93
369 371 2.166907 TTGCTTCCCCTCAAACCAAA 57.833 45.000 0.00 0.00 0.00 3.28
370 372 2.166907 TTTGCTTCCCCTCAAACCAA 57.833 45.000 0.00 0.00 0.00 3.67
371 373 2.038659 CTTTTGCTTCCCCTCAAACCA 58.961 47.619 0.00 0.00 32.58 3.67
372 374 2.039418 ACTTTTGCTTCCCCTCAAACC 58.961 47.619 0.00 0.00 32.58 3.27
373 375 3.819564 AACTTTTGCTTCCCCTCAAAC 57.180 42.857 0.00 0.00 32.58 2.93
374 376 3.517500 ACAAACTTTTGCTTCCCCTCAAA 59.482 39.130 1.49 0.00 41.79 2.69
375 377 3.103742 ACAAACTTTTGCTTCCCCTCAA 58.896 40.909 1.49 0.00 41.79 3.02
376 378 2.693074 GACAAACTTTTGCTTCCCCTCA 59.307 45.455 1.49 0.00 41.79 3.86
377 379 2.035961 GGACAAACTTTTGCTTCCCCTC 59.964 50.000 1.49 0.00 41.79 4.30
378 380 2.039418 GGACAAACTTTTGCTTCCCCT 58.961 47.619 1.49 0.00 41.79 4.79
379 381 1.760029 TGGACAAACTTTTGCTTCCCC 59.240 47.619 1.49 0.00 41.79 4.81
380 382 3.132111 TCTTGGACAAACTTTTGCTTCCC 59.868 43.478 1.49 0.17 41.79 3.97
381 383 4.112634 GTCTTGGACAAACTTTTGCTTCC 58.887 43.478 1.49 3.50 41.79 3.46
382 384 4.112634 GGTCTTGGACAAACTTTTGCTTC 58.887 43.478 1.49 0.00 41.79 3.86
383 385 3.428862 CGGTCTTGGACAAACTTTTGCTT 60.429 43.478 1.49 0.00 41.79 3.91
384 386 2.099098 CGGTCTTGGACAAACTTTTGCT 59.901 45.455 1.49 0.00 41.79 3.91
385 387 2.098443 TCGGTCTTGGACAAACTTTTGC 59.902 45.455 1.49 0.00 41.79 3.68
386 388 3.625764 TCTCGGTCTTGGACAAACTTTTG 59.374 43.478 0.00 0.00 43.62 2.44
387 389 3.881220 TCTCGGTCTTGGACAAACTTTT 58.119 40.909 0.14 0.00 33.68 2.27
388 390 3.553828 TCTCGGTCTTGGACAAACTTT 57.446 42.857 0.14 0.00 33.68 2.66
389 391 3.403038 CATCTCGGTCTTGGACAAACTT 58.597 45.455 0.14 0.00 33.68 2.66
390 392 2.872038 GCATCTCGGTCTTGGACAAACT 60.872 50.000 0.14 0.00 33.68 2.66
391 393 1.464997 GCATCTCGGTCTTGGACAAAC 59.535 52.381 0.14 0.00 33.68 2.93
392 394 1.808411 GCATCTCGGTCTTGGACAAA 58.192 50.000 0.14 0.00 33.68 2.83
393 395 0.389817 CGCATCTCGGTCTTGGACAA 60.390 55.000 0.14 0.00 33.68 3.18
394 396 1.215382 CGCATCTCGGTCTTGGACA 59.785 57.895 0.14 0.00 33.68 4.02
395 397 1.078759 CACGCATCTCGGTCTTGGAC 61.079 60.000 0.00 0.00 43.86 4.02
396 398 1.215382 CACGCATCTCGGTCTTGGA 59.785 57.895 0.00 0.00 43.86 3.53
397 399 0.179100 ATCACGCATCTCGGTCTTGG 60.179 55.000 0.00 0.00 43.86 3.61
398 400 1.203928 GATCACGCATCTCGGTCTTG 58.796 55.000 0.00 0.00 43.86 3.02
399 401 0.817654 TGATCACGCATCTCGGTCTT 59.182 50.000 0.00 0.00 43.86 3.01
400 402 1.000827 GATGATCACGCATCTCGGTCT 60.001 52.381 0.00 0.00 43.86 3.85
401 403 1.413382 GATGATCACGCATCTCGGTC 58.587 55.000 0.00 0.00 43.86 4.79
402 404 3.577231 GATGATCACGCATCTCGGT 57.423 52.632 0.00 0.00 43.86 4.69
407 409 4.966366 GCAAGTAAAAGATGATCACGCATC 59.034 41.667 0.00 0.00 43.88 3.91
408 410 4.201950 GGCAAGTAAAAGATGATCACGCAT 60.202 41.667 0.00 0.00 0.00 4.73
409 411 3.126858 GGCAAGTAAAAGATGATCACGCA 59.873 43.478 0.00 0.00 0.00 5.24
459 2861 2.083774 CGCCACAACCATAGTTCATGT 58.916 47.619 0.00 0.00 32.45 3.21
470 2872 1.243902 TCAAAAGGATCGCCACAACC 58.756 50.000 0.00 0.00 36.29 3.77
482 2884 5.674569 GCATGTACTACACTGCATCAAAAGG 60.675 44.000 14.03 0.00 34.80 3.11
489 2891 5.052481 CACATAGCATGTACTACACTGCAT 58.948 41.667 18.11 10.97 42.70 3.96
494 2896 7.115520 GTCATCATCACATAGCATGTACTACAC 59.884 40.741 0.00 0.00 42.70 2.90
498 2900 6.165700 TGTCATCATCACATAGCATGTACT 57.834 37.500 0.00 0.00 42.70 2.73
499 2901 6.849588 TTGTCATCATCACATAGCATGTAC 57.150 37.500 0.00 0.00 42.70 2.90
500 2902 9.158233 CATATTGTCATCATCACATAGCATGTA 57.842 33.333 0.00 0.00 42.70 2.29
501 2903 7.664318 ACATATTGTCATCATCACATAGCATGT 59.336 33.333 0.00 0.00 46.22 3.21
526 2951 8.742554 ATCTCGGTCATTTATTTTCAACAAAC 57.257 30.769 0.00 0.00 0.00 2.93
542 2967 5.293324 CGATCCATTTGTTTTATCTCGGTCA 59.707 40.000 0.00 0.00 0.00 4.02
543 2968 5.277345 CCGATCCATTTGTTTTATCTCGGTC 60.277 44.000 0.00 0.00 38.57 4.79
551 2976 1.746220 CCGGCCGATCCATTTGTTTTA 59.254 47.619 30.73 0.00 34.01 1.52
552 2977 0.530288 CCGGCCGATCCATTTGTTTT 59.470 50.000 30.73 0.00 34.01 2.43
553 2978 0.322997 TCCGGCCGATCCATTTGTTT 60.323 50.000 30.73 0.00 34.01 2.83
556 2981 2.186826 GGTCCGGCCGATCCATTTG 61.187 63.158 30.73 7.15 34.01 2.32
571 2996 2.467566 ATGAACCACCACTAACGGTC 57.532 50.000 0.00 0.00 37.07 4.79
572 2997 2.500229 CAATGAACCACCACTAACGGT 58.500 47.619 0.00 0.00 41.07 4.83
573 2998 1.199097 GCAATGAACCACCACTAACGG 59.801 52.381 0.00 0.00 0.00 4.44
574 2999 1.199097 GGCAATGAACCACCACTAACG 59.801 52.381 0.00 0.00 0.00 3.18
575 3000 2.514803 AGGCAATGAACCACCACTAAC 58.485 47.619 0.00 0.00 0.00 2.34
576 3001 2.969821 AGGCAATGAACCACCACTAA 57.030 45.000 0.00 0.00 0.00 2.24
577 3002 4.719773 ACTATAGGCAATGAACCACCACTA 59.280 41.667 4.43 0.00 0.00 2.74
578 3003 3.523564 ACTATAGGCAATGAACCACCACT 59.476 43.478 4.43 0.00 0.00 4.00
579 3004 3.627577 CACTATAGGCAATGAACCACCAC 59.372 47.826 4.43 0.00 0.00 4.16
580 3005 3.265737 ACACTATAGGCAATGAACCACCA 59.734 43.478 4.43 0.00 0.00 4.17
581 3006 3.886123 ACACTATAGGCAATGAACCACC 58.114 45.455 4.43 0.00 0.00 4.61
582 3007 4.700213 ACAACACTATAGGCAATGAACCAC 59.300 41.667 4.43 0.00 0.00 4.16
583 3008 4.917385 ACAACACTATAGGCAATGAACCA 58.083 39.130 4.43 0.00 0.00 3.67
584 3009 6.995511 TTACAACACTATAGGCAATGAACC 57.004 37.500 4.43 0.00 0.00 3.62
585 3010 8.338259 CAGATTACAACACTATAGGCAATGAAC 58.662 37.037 4.43 0.00 0.00 3.18
586 3011 7.498900 CCAGATTACAACACTATAGGCAATGAA 59.501 37.037 4.43 0.00 0.00 2.57
587 3012 6.992123 CCAGATTACAACACTATAGGCAATGA 59.008 38.462 4.43 0.00 0.00 2.57
588 3013 6.992123 TCCAGATTACAACACTATAGGCAATG 59.008 38.462 4.43 0.59 0.00 2.82
589 3014 7.136822 TCCAGATTACAACACTATAGGCAAT 57.863 36.000 4.43 0.00 0.00 3.56
590 3015 6.553953 TCCAGATTACAACACTATAGGCAA 57.446 37.500 4.43 0.00 0.00 4.52
591 3016 6.553953 TTCCAGATTACAACACTATAGGCA 57.446 37.500 4.43 0.00 0.00 4.75
592 3017 6.651225 GGATTCCAGATTACAACACTATAGGC 59.349 42.308 4.43 0.00 0.00 3.93
593 3018 7.735917 TGGATTCCAGATTACAACACTATAGG 58.264 38.462 0.00 0.00 0.00 2.57
594 3019 9.613428 TTTGGATTCCAGATTACAACACTATAG 57.387 33.333 5.36 0.00 33.81 1.31
596 3021 9.479549 AATTTGGATTCCAGATTACAACACTAT 57.520 29.630 17.49 0.00 36.71 2.12
597 3022 8.877864 AATTTGGATTCCAGATTACAACACTA 57.122 30.769 17.49 0.00 36.71 2.74
598 3023 7.781324 AATTTGGATTCCAGATTACAACACT 57.219 32.000 17.49 0.00 36.71 3.55
599 3024 8.711457 CAAAATTTGGATTCCAGATTACAACAC 58.289 33.333 18.85 0.00 37.35 3.32
600 3025 8.428063 ACAAAATTTGGATTCCAGATTACAACA 58.572 29.630 18.85 0.00 37.35 3.33
601 3026 8.711457 CACAAAATTTGGATTCCAGATTACAAC 58.289 33.333 18.85 0.00 37.35 3.32
602 3027 8.646004 TCACAAAATTTGGATTCCAGATTACAA 58.354 29.630 18.85 5.01 37.35 2.41
603 3028 8.187913 TCACAAAATTTGGATTCCAGATTACA 57.812 30.769 18.85 0.00 37.35 2.41
606 3031 9.657419 GTTATCACAAAATTTGGATTCCAGATT 57.343 29.630 14.17 14.17 39.54 2.40
607 3032 8.260114 GGTTATCACAAAATTTGGATTCCAGAT 58.740 33.333 10.71 4.07 33.81 2.90
608 3033 7.576666 CGGTTATCACAAAATTTGGATTCCAGA 60.577 37.037 10.71 1.37 33.81 3.86
609 3034 6.531240 CGGTTATCACAAAATTTGGATTCCAG 59.469 38.462 10.71 0.00 33.81 3.86
610 3035 6.015010 ACGGTTATCACAAAATTTGGATTCCA 60.015 34.615 10.71 0.00 34.12 3.53
611 3036 6.310224 CACGGTTATCACAAAATTTGGATTCC 59.690 38.462 10.71 12.71 34.12 3.01
612 3037 6.866248 ACACGGTTATCACAAAATTTGGATTC 59.134 34.615 10.71 6.95 34.12 2.52
613 3038 6.754193 ACACGGTTATCACAAAATTTGGATT 58.246 32.000 10.71 0.00 34.12 3.01
614 3039 6.339587 ACACGGTTATCACAAAATTTGGAT 57.660 33.333 10.71 11.54 34.12 3.41
615 3040 5.776173 ACACGGTTATCACAAAATTTGGA 57.224 34.783 10.71 5.17 34.12 3.53
616 3041 5.751028 ACAACACGGTTATCACAAAATTTGG 59.249 36.000 10.71 0.00 34.12 3.28
617 3042 6.820470 ACAACACGGTTATCACAAAATTTG 57.180 33.333 3.89 3.89 0.00 2.32
618 3043 7.036220 TCAACAACACGGTTATCACAAAATTT 58.964 30.769 0.00 0.00 0.00 1.82
619 3044 6.565234 TCAACAACACGGTTATCACAAAATT 58.435 32.000 0.00 0.00 0.00 1.82
620 3045 6.137794 TCAACAACACGGTTATCACAAAAT 57.862 33.333 0.00 0.00 0.00 1.82
621 3046 5.562506 TCAACAACACGGTTATCACAAAA 57.437 34.783 0.00 0.00 0.00 2.44
622 3047 5.515184 CATCAACAACACGGTTATCACAAA 58.485 37.500 0.00 0.00 0.00 2.83
623 3048 4.555708 GCATCAACAACACGGTTATCACAA 60.556 41.667 0.00 0.00 0.00 3.33
624 3049 3.058570 GCATCAACAACACGGTTATCACA 60.059 43.478 0.00 0.00 0.00 3.58
625 3050 3.058570 TGCATCAACAACACGGTTATCAC 60.059 43.478 0.00 0.00 0.00 3.06
626 3051 3.058570 GTGCATCAACAACACGGTTATCA 60.059 43.478 0.00 0.00 0.00 2.15
627 3052 3.188460 AGTGCATCAACAACACGGTTATC 59.812 43.478 0.00 0.00 39.31 1.75
628 3053 3.058293 CAGTGCATCAACAACACGGTTAT 60.058 43.478 0.00 0.00 39.31 1.89
629 3054 2.289274 CAGTGCATCAACAACACGGTTA 59.711 45.455 0.00 0.00 39.31 2.85
630 3055 1.065401 CAGTGCATCAACAACACGGTT 59.935 47.619 0.00 0.00 39.31 4.44
631 3056 0.662619 CAGTGCATCAACAACACGGT 59.337 50.000 0.00 0.00 39.31 4.83
632 3057 0.661187 GCAGTGCATCAACAACACGG 60.661 55.000 11.09 0.00 39.31 4.94
633 3058 0.661187 GGCAGTGCATCAACAACACG 60.661 55.000 18.61 0.00 39.31 4.49
634 3059 0.385029 TGGCAGTGCATCAACAACAC 59.615 50.000 18.61 0.00 34.48 3.32
635 3060 0.669619 CTGGCAGTGCATCAACAACA 59.330 50.000 18.61 1.70 0.00 3.33
636 3061 0.953727 TCTGGCAGTGCATCAACAAC 59.046 50.000 18.61 0.00 0.00 3.32
637 3062 1.913778 ATCTGGCAGTGCATCAACAA 58.086 45.000 18.61 0.00 0.00 2.83
638 3063 1.542472 CAATCTGGCAGTGCATCAACA 59.458 47.619 18.61 4.04 0.00 3.33
639 3064 1.135199 CCAATCTGGCAGTGCATCAAC 60.135 52.381 18.61 0.00 0.00 3.18
640 3065 1.179152 CCAATCTGGCAGTGCATCAA 58.821 50.000 18.61 0.00 0.00 2.57
672 3097 2.587080 CAGTTTGGCTGGCATCCAT 58.413 52.632 11.41 0.00 41.42 3.41
691 3117 3.560896 TGTGTTTTGTCGGTTTAGGTAGC 59.439 43.478 0.00 0.00 0.00 3.58
693 3119 4.332268 GTGTGTGTTTTGTCGGTTTAGGTA 59.668 41.667 0.00 0.00 0.00 3.08
702 3128 2.603224 TGTGTGTGTGTGTTTTGTCG 57.397 45.000 0.00 0.00 0.00 4.35
750 3176 1.593006 CGATCTAAATGGACACGCACC 59.407 52.381 0.00 0.00 0.00 5.01
751 3177 1.593006 CCGATCTAAATGGACACGCAC 59.407 52.381 0.00 0.00 0.00 5.34
765 3200 0.170561 CAACTCGAACCGACCGATCT 59.829 55.000 0.00 0.00 35.35 2.75
849 3285 1.607148 CCAAAAGTCCCAAACCGACTC 59.393 52.381 0.00 0.00 39.69 3.36
850 3286 1.687563 CCAAAAGTCCCAAACCGACT 58.312 50.000 0.00 0.00 42.41 4.18
851 3287 0.031585 GCCAAAAGTCCCAAACCGAC 59.968 55.000 0.00 0.00 0.00 4.79
852 3288 1.448922 CGCCAAAAGTCCCAAACCGA 61.449 55.000 0.00 0.00 0.00 4.69
853 3289 1.007849 CGCCAAAAGTCCCAAACCG 60.008 57.895 0.00 0.00 0.00 4.44
877 3313 3.799755 AGGGCAAAATCGCGTCGC 61.800 61.111 7.29 7.29 0.00 5.19
958 3394 1.007607 GAATTTGGGGGAGGAAGGGA 58.992 55.000 0.00 0.00 0.00 4.20
959 3395 0.395724 CGAATTTGGGGGAGGAAGGG 60.396 60.000 0.00 0.00 0.00 3.95
961 3397 1.037579 GGCGAATTTGGGGGAGGAAG 61.038 60.000 0.00 0.00 0.00 3.46
962 3398 1.000145 GGCGAATTTGGGGGAGGAA 60.000 57.895 0.00 0.00 0.00 3.36
963 3399 2.680965 GGCGAATTTGGGGGAGGA 59.319 61.111 0.00 0.00 0.00 3.71
1221 3659 1.384191 GTCCCAGGAGGTGGCAATT 59.616 57.895 0.00 0.00 46.45 2.32
1305 3743 4.421058 TCAGTATTTCACTCACCGATTCG 58.579 43.478 0.00 0.00 34.26 3.34
1470 3908 7.705325 CAGAAAGGCTAAAATTGAAGATCCATG 59.295 37.037 0.00 0.00 0.00 3.66
1471 3909 7.147776 CCAGAAAGGCTAAAATTGAAGATCCAT 60.148 37.037 0.00 0.00 0.00 3.41
1494 3932 1.135257 CAGAGCGACCTAACAGTCCAG 60.135 57.143 0.00 0.00 32.91 3.86
1532 3970 4.910458 ACAACCTAGCTTAGTGGTCATT 57.090 40.909 0.00 0.00 32.98 2.57
1533 3971 4.910458 AACAACCTAGCTTAGTGGTCAT 57.090 40.909 0.00 0.00 32.98 3.06
1679 4117 3.171828 TTCTTTGACCGGCGCCTCA 62.172 57.895 26.68 19.90 0.00 3.86
1768 4206 4.037446 TCAATGTAACTTGAGGTTTGTGCC 59.963 41.667 0.00 0.00 39.17 5.01
1795 4233 6.985188 TTTGAGTCGCAGCTAATTCTAAAT 57.015 33.333 0.00 0.00 0.00 1.40
1842 4280 2.640346 TGATGCAACATGTCATGTGC 57.360 45.000 19.08 21.38 44.07 4.57
1850 4288 4.968812 TCCACTGTTATGATGCAACATG 57.031 40.909 18.82 5.22 35.46 3.21
1874 4312 2.611292 GGACACTGCATCAGTATTCAGC 59.389 50.000 0.00 0.00 43.43 4.26
1905 4343 5.897377 ATGTAGCATGGTCCTTTACAAAC 57.103 39.130 0.00 0.00 0.00 2.93
1953 4393 5.037383 TGTAGGTCCATTGTGTTTGTACA 57.963 39.130 0.00 0.00 0.00 2.90
2053 4493 1.098050 CATGAGCTGGGTTAGGTTGC 58.902 55.000 0.00 0.00 37.23 4.17
2216 4656 2.679837 CAACTCCACTGCATCCATGTAC 59.320 50.000 0.00 0.00 0.00 2.90
2253 4693 4.323417 TGCTGTACAAGAACGATGGATTT 58.677 39.130 0.00 0.00 0.00 2.17
2343 4783 1.628846 AGTGACGTTAGGGAAAGCCAT 59.371 47.619 0.00 0.00 35.15 4.40
2376 4816 4.415596 ACAGTGAAAATAGCATTGGGGAA 58.584 39.130 0.00 0.00 0.00 3.97
2377 4817 4.046286 ACAGTGAAAATAGCATTGGGGA 57.954 40.909 0.00 0.00 0.00 4.81
2581 5278 6.389906 AGAGAGGCAAATTATTTGTTTTCCG 58.610 36.000 17.51 0.00 42.56 4.30
2594 5291 7.505923 ACCTTTAAACAACTAAGAGAGGCAAAT 59.494 33.333 0.00 0.00 0.00 2.32
2692 5389 4.214986 TGTTCATCAGGCGAGGAATAAA 57.785 40.909 8.98 0.00 43.28 1.40
2701 5398 4.393062 ACTCAACTAAATGTTCATCAGGCG 59.607 41.667 0.00 0.00 36.63 5.52
2778 5658 8.804743 CAAATCATTGCTTATTTACTCTTGCTG 58.195 33.333 0.00 0.00 0.00 4.41
3187 6071 5.614324 TCATGTATTAGGTTGGAGGACAG 57.386 43.478 0.00 0.00 0.00 3.51
3255 6139 7.617935 GCATTTACTTGTTTTTCTGAATGCTCG 60.618 37.037 9.67 0.00 42.71 5.03
3361 6245 3.252701 GTGATGATGCATCCAGGACAATC 59.747 47.826 23.67 16.92 39.87 2.67
3436 6321 8.134895 TCATAACAAGGTCATTTTCTTCAACAC 58.865 33.333 0.00 0.00 0.00 3.32
3576 6461 9.447040 GAACAATTTTTACAGTGGACTTAGAAC 57.553 33.333 0.00 0.00 0.00 3.01
3852 6737 8.797438 TCAGCGAGTTAACAGAGAATATATCAT 58.203 33.333 8.61 0.00 0.00 2.45
3968 6853 7.059202 AGTGAAAGCAATTTTCTTCTCCAAT 57.941 32.000 1.88 0.00 44.49 3.16
4007 6892 9.869844 CAGGTATTCAGATATTTGAATTCGAAC 57.130 33.333 22.39 15.41 43.41 3.95
4035 6920 5.627182 AATTGCTGATCATAGGACAGTCT 57.373 39.130 0.00 0.00 34.60 3.24
4038 6923 6.594547 CCTGATAATTGCTGATCATAGGACAG 59.405 42.308 0.00 0.00 31.81 3.51
4217 7103 8.970859 AGACAATGGGAGAATCACTTAAATAG 57.029 34.615 0.00 0.00 41.12 1.73
4254 7140 9.729023 CACATTAGAAATCACGGCATTAATTAA 57.271 29.630 0.00 0.00 0.00 1.40
4265 7151 9.825972 AGTTGAAAATACACATTAGAAATCACG 57.174 29.630 0.00 0.00 0.00 4.35
4372 7533 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4373 7534 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4374 7535 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
4375 7536 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
4376 7537 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
4377 7538 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
4378 7539 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
4379 7540 9.750125 AAAAAGTTGAGTCATCTATTTTGGAAC 57.250 29.630 4.14 0.00 0.00 3.62
4382 7543 9.626045 GGTAAAAAGTTGAGTCATCTATTTTGG 57.374 33.333 20.28 0.00 0.00 3.28
4386 7547 9.574516 AGTTGGTAAAAAGTTGAGTCATCTATT 57.425 29.630 4.14 5.95 0.00 1.73
4387 7548 9.574516 AAGTTGGTAAAAAGTTGAGTCATCTAT 57.425 29.630 4.14 0.00 0.00 1.98
4388 7549 8.974060 AAGTTGGTAAAAAGTTGAGTCATCTA 57.026 30.769 4.14 0.00 0.00 1.98
4389 7550 7.881775 AAGTTGGTAAAAAGTTGAGTCATCT 57.118 32.000 0.00 0.00 0.00 2.90
4390 7551 9.665264 CTAAAGTTGGTAAAAAGTTGAGTCATC 57.335 33.333 0.00 0.00 0.00 2.92
4391 7552 9.185680 ACTAAAGTTGGTAAAAAGTTGAGTCAT 57.814 29.630 0.00 0.00 31.12 3.06
4392 7553 8.570068 ACTAAAGTTGGTAAAAAGTTGAGTCA 57.430 30.769 0.00 0.00 31.12 3.41
4393 7554 9.926751 GTACTAAAGTTGGTAAAAAGTTGAGTC 57.073 33.333 0.00 0.00 36.18 3.36
4394 7555 9.452287 TGTACTAAAGTTGGTAAAAAGTTGAGT 57.548 29.630 0.00 0.00 37.72 3.41
4415 7576 9.716531 GACCCAACTTTATACTAACTTTGTACT 57.283 33.333 0.00 0.00 0.00 2.73
4416 7577 9.492973 TGACCCAACTTTATACTAACTTTGTAC 57.507 33.333 0.00 0.00 0.00 2.90
4418 7579 9.227777 GATGACCCAACTTTATACTAACTTTGT 57.772 33.333 0.00 0.00 0.00 2.83
4419 7580 9.449719 AGATGACCCAACTTTATACTAACTTTG 57.550 33.333 0.00 0.00 0.00 2.77
4426 7587 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
4427 7588 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
4428 7589 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
4429 7590 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
4430 7591 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
4431 7592 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
4432 7593 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
4433 7594 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
4434 7595 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
4435 7596 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
4436 7597 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
4437 7598 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
4438 7599 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
4439 7600 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4440 7601 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4441 7602 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4442 7603 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4443 7604 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4444 7605 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4445 7606 5.703730 AATACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
4446 7607 4.586306 AATACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
4447 7608 5.703730 ATAATACTCCCTCCGTTCCAAAA 57.296 39.130 0.00 0.00 0.00 2.44
4448 7609 5.703730 AATAATACTCCCTCCGTTCCAAA 57.296 39.130 0.00 0.00 0.00 3.28
4449 7610 5.901276 ACTAATAATACTCCCTCCGTTCCAA 59.099 40.000 0.00 0.00 0.00 3.53
4450 7611 5.461327 ACTAATAATACTCCCTCCGTTCCA 58.539 41.667 0.00 0.00 0.00 3.53
4451 7612 6.416631 AACTAATAATACTCCCTCCGTTCC 57.583 41.667 0.00 0.00 0.00 3.62
4452 7613 7.724287 AGAAACTAATAATACTCCCTCCGTTC 58.276 38.462 0.00 0.00 0.00 3.95
4453 7614 7.343833 TGAGAAACTAATAATACTCCCTCCGTT 59.656 37.037 0.00 0.00 0.00 4.44
4454 7615 6.837568 TGAGAAACTAATAATACTCCCTCCGT 59.162 38.462 0.00 0.00 0.00 4.69
4455 7616 7.286215 TGAGAAACTAATAATACTCCCTCCG 57.714 40.000 0.00 0.00 0.00 4.63
4456 7617 9.549078 CTTTGAGAAACTAATAATACTCCCTCC 57.451 37.037 0.00 0.00 0.00 4.30
4618 7779 3.006112 TGGTAAACTTGTCACTGCCAA 57.994 42.857 0.00 0.00 0.00 4.52
4622 7783 7.672983 ATAACTCATGGTAAACTTGTCACTG 57.327 36.000 0.00 0.00 0.00 3.66
4720 7883 5.689961 CGCCTTACAATTATGCCCATTTTAC 59.310 40.000 0.00 0.00 0.00 2.01
4778 7947 2.734276 TTGTTTTTAAGGCATCCCGC 57.266 45.000 0.00 0.00 41.28 6.13
4826 7995 3.620488 TCTCTGTTTGCAAGGAAACACT 58.380 40.909 14.58 0.00 40.18 3.55
5003 8176 4.581824 GCAAAGATTGAGCCATCCTGATTA 59.418 41.667 0.00 0.00 0.00 1.75
5334 8509 5.125417 GCCATACTTCCAGTTAATCAAAGCA 59.875 40.000 0.00 0.00 0.00 3.91
5393 8568 2.648613 TTTGTCCCCGCCACACCAAT 62.649 55.000 0.00 0.00 0.00 3.16
5463 8638 7.726033 AAGGAGAACAGAATACAGTACATCT 57.274 36.000 0.00 0.00 0.00 2.90
5503 8678 4.582701 TTAGCAATTTGAACACCACAGG 57.417 40.909 0.00 0.00 0.00 4.00
5655 8832 8.642020 GGAATTTTGAAATCAATCGAAGACTTG 58.358 33.333 0.00 0.00 42.51 3.16
5707 8885 9.489084 TGTTACATAGGAAATGCAGATATGTAC 57.511 33.333 14.03 11.36 38.42 2.90
5710 8899 9.888878 CTTTGTTACATAGGAAATGCAGATATG 57.111 33.333 0.00 0.00 0.00 1.78
5757 8946 6.813152 TGAACTAATTGTAGGTAACGGCTAAC 59.187 38.462 0.00 0.00 46.39 2.34
5758 8947 6.934056 TGAACTAATTGTAGGTAACGGCTAA 58.066 36.000 0.00 0.00 46.39 3.09
5894 9083 4.890088 TCTAAGGTGAATTGCGTACAAGT 58.110 39.130 0.00 0.00 39.69 3.16
5895 9084 5.856126 TTCTAAGGTGAATTGCGTACAAG 57.144 39.130 0.00 0.00 39.69 3.16
5896 9085 6.811253 ATTTCTAAGGTGAATTGCGTACAA 57.189 33.333 0.00 0.00 40.87 2.41
5931 9120 6.377996 TGATGTTATGTGATCTTTCAAAGGGG 59.622 38.462 0.00 0.00 32.48 4.79
5932 9121 7.395190 TGATGTTATGTGATCTTTCAAAGGG 57.605 36.000 0.00 0.00 32.48 3.95
5933 9122 8.680001 TGATGATGTTATGTGATCTTTCAAAGG 58.320 33.333 0.00 0.00 32.48 3.11
5934 9123 9.499585 GTGATGATGTTATGTGATCTTTCAAAG 57.500 33.333 0.00 0.00 32.48 2.77
5956 9145 7.024345 TGGCATGATAGAAGGATATTGTGAT 57.976 36.000 0.00 0.00 0.00 3.06
5962 9151 9.449896 AAGATATCTGGCATGATAGAAGGATAT 57.550 33.333 5.86 6.39 33.12 1.63
5974 9163 7.284034 AGGACTAAACAAAAGATATCTGGCATG 59.716 37.037 5.86 5.96 0.00 4.06
6004 9195 5.538067 AAGAAAGAGTAAAGAGCGATTGC 57.462 39.130 0.00 0.00 43.24 3.56
6083 9274 0.319083 TGCAGCTTGCCATTTCCAAG 59.681 50.000 5.82 0.00 44.23 3.61
6084 9275 0.319083 CTGCAGCTTGCCATTTCCAA 59.681 50.000 0.00 0.00 44.23 3.53
6093 9286 1.136984 GCACAGATCTGCAGCTTGC 59.863 57.895 25.37 21.22 45.29 4.01
6138 9331 1.937223 CGTGCGGGTAATTAGCATCAA 59.063 47.619 16.07 0.00 43.17 2.57
6153 9346 6.586751 TCTAAAAGATTAAAACACTCGTGCG 58.413 36.000 0.00 0.00 0.00 5.34
6167 9360 8.482128 CCCTACAGAGTCAAGATCTAAAAGATT 58.518 37.037 0.00 0.00 34.53 2.40
6168 9361 7.418483 GCCCTACAGAGTCAAGATCTAAAAGAT 60.418 40.741 0.00 0.00 37.73 2.40
6169 9362 6.127310 GCCCTACAGAGTCAAGATCTAAAAGA 60.127 42.308 0.00 0.00 0.00 2.52
6170 9363 6.045955 GCCCTACAGAGTCAAGATCTAAAAG 58.954 44.000 0.00 0.00 0.00 2.27
6218 9411 5.290386 ACTGCTGTTTATAGAAGATACGCC 58.710 41.667 0.00 0.00 0.00 5.68
6221 9414 7.539712 TGCAACTGCTGTTTATAGAAGATAC 57.460 36.000 6.20 0.00 42.66 2.24
6235 9428 1.334054 GCGAAGAAATGCAACTGCTG 58.666 50.000 2.95 0.00 42.66 4.41
6253 9446 1.094785 ACGACCTGCCATTTACATGC 58.905 50.000 0.00 0.00 0.00 4.06
6274 9468 3.885297 ACAGCAGAACTACAGCAACAAAT 59.115 39.130 0.00 0.00 33.37 2.32
6291 9485 2.495270 TCCAACTTGCAGAAAAACAGCA 59.505 40.909 0.00 0.00 39.16 4.41
6324 9518 6.659824 AGTCCTTCAACTCTTTGTTCCTAAA 58.340 36.000 0.00 0.00 36.63 1.85
6362 9556 2.424601 CCATGTCAGCAAATCAACGGAT 59.575 45.455 0.00 0.00 34.43 4.18
6363 9557 1.811965 CCATGTCAGCAAATCAACGGA 59.188 47.619 0.00 0.00 0.00 4.69
6365 9559 1.811965 TCCCATGTCAGCAAATCAACG 59.188 47.619 0.00 0.00 0.00 4.10
6500 9702 2.180159 TTGCAGAGTAGCCGAACCCC 62.180 60.000 0.00 0.00 0.00 4.95
6519 9721 7.451877 ACAGTACCTATGCAGTAATAGCTGTAT 59.548 37.037 0.00 0.00 42.76 2.29
6536 9738 4.880164 AGATTGGCTTCCTACAGTACCTA 58.120 43.478 0.00 0.00 0.00 3.08
6559 9761 2.616842 GCGTCGGATTAAAATGGATGGT 59.383 45.455 0.00 0.00 0.00 3.55
6651 9853 1.878656 CTCGCCAGGGACGAAGAGTT 61.879 60.000 0.00 0.00 39.39 3.01
6652 9854 2.282958 TCGCCAGGGACGAAGAGT 60.283 61.111 0.00 0.00 36.44 3.24
6715 9919 2.031944 TCCGAATAGACGAAGATGAGCG 60.032 50.000 0.00 0.00 35.09 5.03
6742 9946 3.125146 GCAGCTTAATGATGTTGTCGACA 59.875 43.478 15.76 15.76 43.71 4.35
6768 10016 1.453015 GAGAGAGAGAGGCGCAGGA 60.453 63.158 10.83 0.00 0.00 3.86
6786 10034 2.725490 CATGGAGACGATCAGACGAAG 58.275 52.381 0.00 0.00 37.03 3.79
6788 10036 0.382158 GCATGGAGACGATCAGACGA 59.618 55.000 0.00 0.00 37.03 4.20
6789 10037 0.596083 GGCATGGAGACGATCAGACG 60.596 60.000 0.00 0.00 39.31 4.18
6905 10153 3.394719 CGAGACGATAGATGAGACCTCA 58.605 50.000 1.83 1.83 41.59 3.86
6906 10154 2.739913 CCGAGACGATAGATGAGACCTC 59.260 54.545 0.00 0.00 41.38 3.85
6907 10155 2.369203 TCCGAGACGATAGATGAGACCT 59.631 50.000 0.00 0.00 41.38 3.85
6908 10156 2.739913 CTCCGAGACGATAGATGAGACC 59.260 54.545 0.00 0.00 41.38 3.85
6909 10157 2.739913 CCTCCGAGACGATAGATGAGAC 59.260 54.545 0.00 0.00 41.38 3.36
6910 10158 2.369203 ACCTCCGAGACGATAGATGAGA 59.631 50.000 0.00 0.00 41.38 3.27
6911 10159 2.739913 GACCTCCGAGACGATAGATGAG 59.260 54.545 0.00 0.00 41.38 2.90
6917 10165 1.605753 CCATGACCTCCGAGACGATA 58.394 55.000 0.00 0.00 0.00 2.92
6937 10185 1.201647 TGTCGAAGCGGAAGAGGTAAG 59.798 52.381 0.00 0.00 0.00 2.34
6976 10224 0.110678 TCTCCGTGTCAGACCTGAGT 59.889 55.000 0.00 0.00 40.75 3.41
7010 10261 2.580470 CCAGCGCATCATCGTCGTC 61.580 63.158 11.47 0.00 0.00 4.20
7042 10293 1.622607 CGTATGAGGGAACAGGGGCA 61.623 60.000 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.