Multiple sequence alignment - TraesCS3B01G257900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G257900 chr3B 100.000 3352 0 0 1 3352 415922374 415925725 0.000000e+00 6191.0
1 TraesCS3B01G257900 chr3A 89.412 2229 111 54 428 2601 423969279 423967121 0.000000e+00 2693.0
2 TraesCS3B01G257900 chr3A 96.817 754 21 3 2598 3350 423967090 423966339 0.000000e+00 1256.0
3 TraesCS3B01G257900 chr3D 89.323 1920 100 45 761 2607 305878047 305876160 0.000000e+00 2313.0
4 TraesCS3B01G257900 chr3D 97.215 754 20 1 2598 3350 305876136 305875383 0.000000e+00 1275.0
5 TraesCS3B01G257900 chr3D 87.943 423 42 9 1 417 467276044 467275625 1.080000e-134 490.0
6 TraesCS3B01G257900 chr3D 85.274 292 22 5 429 720 305878319 305878049 7.080000e-72 281.0
7 TraesCS3B01G257900 chr6B 88.443 424 44 5 1 422 19544256 19544676 1.070000e-139 507.0
8 TraesCS3B01G257900 chr5D 88.235 425 42 7 1 420 344690558 344690137 4.990000e-138 501.0
9 TraesCS3B01G257900 chr4D 88.235 425 43 7 1 420 75773062 75772640 4.990000e-138 501.0
10 TraesCS3B01G257900 chr7D 87.442 430 41 12 1 421 393581263 393580838 1.810000e-132 483.0
11 TraesCS3B01G257900 chr2B 87.770 417 46 5 1 414 163736233 163736647 1.810000e-132 483.0
12 TraesCS3B01G257900 chr4B 87.589 419 47 5 1 417 652824477 652824892 6.500000e-132 481.0
13 TraesCS3B01G257900 chr7B 86.806 432 51 6 1 429 240025166 240024738 8.410000e-131 477.0
14 TraesCS3B01G257900 chr7B 91.304 69 4 2 2532 2600 705894884 705894818 3.560000e-15 93.5
15 TraesCS3B01G257900 chr5B 87.381 420 48 4 1 418 653396370 653395954 8.410000e-131 477.0
16 TraesCS3B01G257900 chr5B 89.041 73 6 2 2530 2601 559679679 559679750 4.610000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G257900 chr3B 415922374 415925725 3351 False 6191.000000 6191 100.0000 1 3352 1 chr3B.!!$F1 3351
1 TraesCS3B01G257900 chr3A 423966339 423969279 2940 True 1974.500000 2693 93.1145 428 3350 2 chr3A.!!$R1 2922
2 TraesCS3B01G257900 chr3D 305875383 305878319 2936 True 1289.666667 2313 90.6040 429 3350 3 chr3D.!!$R2 2921

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 262 0.034477 CTATGGCCGTGGGTCCTTTT 60.034 55.0 8.05 0.00 0.0 2.27 F
538 539 0.178950 TCTCGCTAGGAGATGGCCAT 60.179 55.0 20.96 20.96 46.8 4.40 F
735 754 0.252197 ACTAGGAAATGCGGGGTGAC 59.748 55.0 0.00 0.00 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1937 2075 0.259065 TCAGGATCGAGTAGTGGGCT 59.741 55.000 0.00 0.0 0.00 5.19 R
1973 2111 2.262915 CAGAGGTCGTCCAGGTGC 59.737 66.667 0.51 0.0 35.89 5.01 R
2572 2713 1.877443 TCGCAGTTTTGAACTAAGCCC 59.123 47.619 0.00 0.0 40.46 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.751437 TCACCGATGAGTGATCTCGT 58.249 50.000 0.00 0.00 41.78 4.18
20 21 1.401905 TCACCGATGAGTGATCTCGTG 59.598 52.381 0.00 1.77 41.78 4.35
21 22 0.741326 ACCGATGAGTGATCTCGTGG 59.259 55.000 0.00 0.00 43.09 4.94
22 23 0.596083 CCGATGAGTGATCTCGTGGC 60.596 60.000 0.00 0.00 43.09 5.01
23 24 0.101219 CGATGAGTGATCTCGTGGCA 59.899 55.000 0.00 0.00 43.09 4.92
24 25 1.850377 GATGAGTGATCTCGTGGCAG 58.150 55.000 0.00 0.00 43.09 4.85
25 26 0.179089 ATGAGTGATCTCGTGGCAGC 60.179 55.000 0.00 0.00 43.09 5.25
26 27 1.875813 GAGTGATCTCGTGGCAGCG 60.876 63.158 0.00 0.00 0.00 5.18
27 28 2.181777 GTGATCTCGTGGCAGCGA 59.818 61.111 10.76 10.76 39.22 4.93
38 39 3.426568 GCAGCGAGCGCCTTCTTT 61.427 61.111 11.66 0.00 43.17 2.52
39 40 2.970974 GCAGCGAGCGCCTTCTTTT 61.971 57.895 11.66 0.00 43.17 2.27
40 41 1.576421 CAGCGAGCGCCTTCTTTTT 59.424 52.632 11.66 0.00 43.17 1.94
58 59 2.697431 TTTTATGTCGGCTTGTGTGC 57.303 45.000 0.00 0.00 0.00 4.57
65 66 4.424566 GGCTTGTGTGCCGGCATG 62.425 66.667 35.23 20.27 43.74 4.06
66 67 3.364441 GCTTGTGTGCCGGCATGA 61.364 61.111 35.23 20.21 0.00 3.07
67 68 2.562912 CTTGTGTGCCGGCATGAC 59.437 61.111 35.23 30.03 0.00 3.06
68 69 2.981560 CTTGTGTGCCGGCATGACC 61.982 63.158 35.23 20.58 0.00 4.02
69 70 3.781605 TTGTGTGCCGGCATGACCA 62.782 57.895 35.23 23.26 39.03 4.02
70 71 2.751436 GTGTGCCGGCATGACCAT 60.751 61.111 35.23 0.00 39.03 3.55
71 72 2.751036 TGTGCCGGCATGACCATG 60.751 61.111 35.23 5.67 41.60 3.66
72 73 3.520862 GTGCCGGCATGACCATGG 61.521 66.667 35.23 11.19 39.16 3.66
73 74 4.818863 TGCCGGCATGACCATGGG 62.819 66.667 29.03 0.00 39.16 4.00
84 85 3.619938 CCATGGGGTTGTGATGGC 58.380 61.111 2.85 0.00 30.63 4.40
85 86 2.417257 CCATGGGGTTGTGATGGCG 61.417 63.158 2.85 0.00 30.63 5.69
86 87 1.678635 CATGGGGTTGTGATGGCGT 60.679 57.895 0.00 0.00 0.00 5.68
87 88 1.678635 ATGGGGTTGTGATGGCGTG 60.679 57.895 0.00 0.00 0.00 5.34
88 89 3.061848 GGGGTTGTGATGGCGTGG 61.062 66.667 0.00 0.00 0.00 4.94
89 90 2.282180 GGGTTGTGATGGCGTGGT 60.282 61.111 0.00 0.00 0.00 4.16
90 91 2.332654 GGGTTGTGATGGCGTGGTC 61.333 63.158 0.00 0.00 0.00 4.02
91 92 1.599518 GGTTGTGATGGCGTGGTCA 60.600 57.895 0.00 0.00 0.00 4.02
92 93 1.169661 GGTTGTGATGGCGTGGTCAA 61.170 55.000 0.00 0.00 0.00 3.18
93 94 0.665835 GTTGTGATGGCGTGGTCAAA 59.334 50.000 0.00 0.00 0.00 2.69
94 95 0.665835 TTGTGATGGCGTGGTCAAAC 59.334 50.000 0.00 0.00 0.00 2.93
95 96 0.179032 TGTGATGGCGTGGTCAAACT 60.179 50.000 0.00 0.00 0.00 2.66
96 97 0.517316 GTGATGGCGTGGTCAAACTC 59.483 55.000 0.00 0.00 0.00 3.01
97 98 0.107643 TGATGGCGTGGTCAAACTCA 59.892 50.000 0.00 0.00 0.00 3.41
98 99 1.234821 GATGGCGTGGTCAAACTCAA 58.765 50.000 0.00 0.00 0.00 3.02
99 100 1.606668 GATGGCGTGGTCAAACTCAAA 59.393 47.619 0.00 0.00 0.00 2.69
100 101 1.686355 TGGCGTGGTCAAACTCAAAT 58.314 45.000 0.00 0.00 0.00 2.32
101 102 1.606668 TGGCGTGGTCAAACTCAAATC 59.393 47.619 0.00 0.00 0.00 2.17
102 103 1.068541 GGCGTGGTCAAACTCAAATCC 60.069 52.381 0.00 0.00 0.00 3.01
103 104 1.068541 GCGTGGTCAAACTCAAATCCC 60.069 52.381 0.00 0.00 0.00 3.85
104 105 2.226330 CGTGGTCAAACTCAAATCCCA 58.774 47.619 0.00 0.00 0.00 4.37
105 106 2.031157 CGTGGTCAAACTCAAATCCCAC 60.031 50.000 0.00 0.00 37.97 4.61
106 107 2.296190 GTGGTCAAACTCAAATCCCACC 59.704 50.000 0.00 0.00 35.88 4.61
107 108 1.893137 GGTCAAACTCAAATCCCACCC 59.107 52.381 0.00 0.00 0.00 4.61
108 109 1.893137 GTCAAACTCAAATCCCACCCC 59.107 52.381 0.00 0.00 0.00 4.95
109 110 1.786441 TCAAACTCAAATCCCACCCCT 59.214 47.619 0.00 0.00 0.00 4.79
110 111 2.178984 TCAAACTCAAATCCCACCCCTT 59.821 45.455 0.00 0.00 0.00 3.95
111 112 2.972021 CAAACTCAAATCCCACCCCTTT 59.028 45.455 0.00 0.00 0.00 3.11
112 113 3.344535 AACTCAAATCCCACCCCTTTT 57.655 42.857 0.00 0.00 0.00 2.27
113 114 3.344535 ACTCAAATCCCACCCCTTTTT 57.655 42.857 0.00 0.00 0.00 1.94
114 115 2.972021 ACTCAAATCCCACCCCTTTTTG 59.028 45.455 0.00 0.00 0.00 2.44
115 116 2.972021 CTCAAATCCCACCCCTTTTTGT 59.028 45.455 0.00 0.00 0.00 2.83
116 117 2.703007 TCAAATCCCACCCCTTTTTGTG 59.297 45.455 0.00 0.00 0.00 3.33
117 118 2.437651 CAAATCCCACCCCTTTTTGTGT 59.562 45.455 0.00 0.00 0.00 3.72
118 119 1.715785 ATCCCACCCCTTTTTGTGTG 58.284 50.000 0.00 0.00 0.00 3.82
119 120 0.336737 TCCCACCCCTTTTTGTGTGT 59.663 50.000 0.00 0.00 0.00 3.72
120 121 1.199615 CCCACCCCTTTTTGTGTGTT 58.800 50.000 0.00 0.00 0.00 3.32
121 122 1.134551 CCCACCCCTTTTTGTGTGTTG 60.135 52.381 0.00 0.00 0.00 3.33
122 123 1.134551 CCACCCCTTTTTGTGTGTTGG 60.135 52.381 0.00 0.00 0.00 3.77
123 124 0.539518 ACCCCTTTTTGTGTGTTGGC 59.460 50.000 0.00 0.00 0.00 4.52
124 125 0.539051 CCCCTTTTTGTGTGTTGGCA 59.461 50.000 0.00 0.00 0.00 4.92
125 126 1.140652 CCCCTTTTTGTGTGTTGGCAT 59.859 47.619 0.00 0.00 0.00 4.40
126 127 2.211806 CCCTTTTTGTGTGTTGGCATG 58.788 47.619 0.00 0.00 0.00 4.06
127 128 2.419851 CCCTTTTTGTGTGTTGGCATGT 60.420 45.455 0.00 0.00 0.00 3.21
128 129 2.608546 CCTTTTTGTGTGTTGGCATGTG 59.391 45.455 0.00 0.00 0.00 3.21
129 130 3.260740 CTTTTTGTGTGTTGGCATGTGT 58.739 40.909 0.00 0.00 0.00 3.72
130 131 2.290531 TTTGTGTGTTGGCATGTGTG 57.709 45.000 0.00 0.00 0.00 3.82
204 205 2.328989 CAATGTATGCCGGCGCTG 59.671 61.111 23.90 9.96 35.36 5.18
205 206 2.901840 AATGTATGCCGGCGCTGG 60.902 61.111 31.57 31.57 35.36 4.85
223 224 2.715536 GCATGATGCCAGCATGAGA 58.284 52.632 25.91 0.00 44.49 3.27
224 225 0.311165 GCATGATGCCAGCATGAGAC 59.689 55.000 25.91 5.24 44.49 3.36
225 226 1.675552 CATGATGCCAGCATGAGACA 58.324 50.000 17.71 1.94 44.49 3.41
226 227 2.230660 CATGATGCCAGCATGAGACAT 58.769 47.619 17.71 4.37 44.49 3.06
227 228 1.675552 TGATGCCAGCATGAGACATG 58.324 50.000 10.41 7.29 39.69 3.21
228 229 0.952280 GATGCCAGCATGAGACATGG 59.048 55.000 10.41 0.00 39.69 3.66
230 231 3.837578 CCAGCATGAGACATGGCC 58.162 61.111 12.56 0.00 39.69 5.36
231 232 2.184830 CCAGCATGAGACATGGCCG 61.185 63.158 12.56 0.00 39.69 6.13
232 233 2.515523 AGCATGAGACATGGCCGC 60.516 61.111 12.56 0.00 0.00 6.53
233 234 2.515523 GCATGAGACATGGCCGCT 60.516 61.111 12.56 0.00 0.00 5.52
234 235 2.831366 GCATGAGACATGGCCGCTG 61.831 63.158 12.56 0.00 0.00 5.18
235 236 1.153309 CATGAGACATGGCCGCTGA 60.153 57.895 11.80 0.00 0.00 4.26
236 237 1.153289 ATGAGACATGGCCGCTGAC 60.153 57.895 11.80 5.88 0.00 3.51
237 238 1.902765 ATGAGACATGGCCGCTGACA 61.903 55.000 11.80 8.79 0.00 3.58
238 239 1.153289 GAGACATGGCCGCTGACAT 60.153 57.895 11.80 0.00 0.00 3.06
240 241 1.450134 GACATGGCCGCTGACATGA 60.450 57.895 28.38 0.00 45.55 3.07
241 242 0.816825 GACATGGCCGCTGACATGAT 60.817 55.000 28.38 13.72 45.55 2.45
242 243 0.816825 ACATGGCCGCTGACATGATC 60.817 55.000 28.38 0.00 45.55 2.92
243 244 0.534427 CATGGCCGCTGACATGATCT 60.534 55.000 18.43 0.00 45.55 2.75
244 245 1.051008 ATGGCCGCTGACATGATCTA 58.949 50.000 0.00 0.00 0.00 1.98
245 246 1.051008 TGGCCGCTGACATGATCTAT 58.949 50.000 0.00 0.00 0.00 1.98
246 247 1.270465 TGGCCGCTGACATGATCTATG 60.270 52.381 0.00 0.00 42.68 2.23
247 248 1.436600 GCCGCTGACATGATCTATGG 58.563 55.000 0.00 0.00 41.25 2.74
248 249 1.436600 CCGCTGACATGATCTATGGC 58.563 55.000 0.00 6.95 45.62 4.40
249 250 1.436600 CGCTGACATGATCTATGGCC 58.563 55.000 0.00 0.00 44.74 5.36
250 251 1.436600 GCTGACATGATCTATGGCCG 58.563 55.000 0.00 4.10 44.74 6.13
251 252 1.270518 GCTGACATGATCTATGGCCGT 60.271 52.381 1.35 1.35 44.74 5.68
252 253 2.410939 CTGACATGATCTATGGCCGTG 58.589 52.381 8.05 0.00 44.74 4.94
253 254 1.070601 TGACATGATCTATGGCCGTGG 59.929 52.381 8.05 4.40 44.74 4.94
254 255 0.397941 ACATGATCTATGGCCGTGGG 59.602 55.000 8.05 0.08 41.25 4.61
255 256 0.397941 CATGATCTATGGCCGTGGGT 59.602 55.000 8.05 0.00 32.95 4.51
256 257 0.687354 ATGATCTATGGCCGTGGGTC 59.313 55.000 14.48 14.48 0.00 4.46
257 258 1.371558 GATCTATGGCCGTGGGTCC 59.628 63.158 10.45 0.00 0.00 4.46
258 259 1.074471 ATCTATGGCCGTGGGTCCT 60.074 57.895 8.05 0.00 0.00 3.85
259 260 0.694444 ATCTATGGCCGTGGGTCCTT 60.694 55.000 8.05 0.00 0.00 3.36
260 261 0.912487 TCTATGGCCGTGGGTCCTTT 60.912 55.000 8.05 0.00 0.00 3.11
261 262 0.034477 CTATGGCCGTGGGTCCTTTT 60.034 55.000 8.05 0.00 0.00 2.27
262 263 0.406361 TATGGCCGTGGGTCCTTTTT 59.594 50.000 8.05 0.00 0.00 1.94
263 264 0.406361 ATGGCCGTGGGTCCTTTTTA 59.594 50.000 0.00 0.00 0.00 1.52
264 265 0.185416 TGGCCGTGGGTCCTTTTTAA 59.815 50.000 0.00 0.00 0.00 1.52
265 266 1.330234 GGCCGTGGGTCCTTTTTAAA 58.670 50.000 0.00 0.00 0.00 1.52
266 267 1.687660 GGCCGTGGGTCCTTTTTAAAA 59.312 47.619 0.00 0.00 0.00 1.52
267 268 2.300723 GGCCGTGGGTCCTTTTTAAAAT 59.699 45.455 0.55 0.00 0.00 1.82
268 269 3.244284 GGCCGTGGGTCCTTTTTAAAATT 60.244 43.478 0.55 0.00 0.00 1.82
269 270 4.382291 GCCGTGGGTCCTTTTTAAAATTT 58.618 39.130 0.55 0.00 0.00 1.82
270 271 5.511031 GGCCGTGGGTCCTTTTTAAAATTTA 60.511 40.000 0.55 0.00 0.00 1.40
271 272 5.990386 GCCGTGGGTCCTTTTTAAAATTTAA 59.010 36.000 0.55 0.00 0.00 1.52
272 273 6.146510 GCCGTGGGTCCTTTTTAAAATTTAAG 59.853 38.462 0.55 0.00 0.00 1.85
273 274 7.211573 CCGTGGGTCCTTTTTAAAATTTAAGT 58.788 34.615 0.55 0.00 0.00 2.24
274 275 7.170151 CCGTGGGTCCTTTTTAAAATTTAAGTG 59.830 37.037 0.55 0.00 0.00 3.16
275 276 7.306925 CGTGGGTCCTTTTTAAAATTTAAGTGC 60.307 37.037 0.55 0.00 0.00 4.40
276 277 6.702282 TGGGTCCTTTTTAAAATTTAAGTGCG 59.298 34.615 0.55 0.00 0.00 5.34
277 278 6.146510 GGGTCCTTTTTAAAATTTAAGTGCGG 59.853 38.462 0.55 0.15 0.00 5.69
278 279 6.924612 GGTCCTTTTTAAAATTTAAGTGCGGA 59.075 34.615 0.55 2.21 0.00 5.54
279 280 7.095940 GGTCCTTTTTAAAATTTAAGTGCGGAC 60.096 37.037 18.85 18.85 35.24 4.79
280 281 7.435784 GTCCTTTTTAAAATTTAAGTGCGGACA 59.564 33.333 20.45 0.00 35.85 4.02
281 282 8.145122 TCCTTTTTAAAATTTAAGTGCGGACAT 58.855 29.630 10.52 0.00 0.00 3.06
282 283 8.220434 CCTTTTTAAAATTTAAGTGCGGACATG 58.780 33.333 10.52 0.00 0.00 3.21
283 284 8.873215 TTTTTAAAATTTAAGTGCGGACATGA 57.127 26.923 10.52 0.00 0.00 3.07
284 285 8.873215 TTTTAAAATTTAAGTGCGGACATGAA 57.127 26.923 10.52 0.00 0.00 2.57
285 286 8.873215 TTTAAAATTTAAGTGCGGACATGAAA 57.127 26.923 10.52 6.67 0.00 2.69
286 287 8.873215 TTAAAATTTAAGTGCGGACATGAAAA 57.127 26.923 10.52 4.33 0.00 2.29
287 288 7.961325 AAAATTTAAGTGCGGACATGAAAAT 57.039 28.000 10.52 6.49 0.00 1.82
289 290 8.687824 AAATTTAAGTGCGGACATGAAAATAG 57.312 30.769 10.52 0.00 0.00 1.73
290 291 7.624360 ATTTAAGTGCGGACATGAAAATAGA 57.376 32.000 10.52 0.00 0.00 1.98
291 292 7.624360 TTTAAGTGCGGACATGAAAATAGAT 57.376 32.000 10.52 0.00 0.00 1.98
292 293 5.741388 AAGTGCGGACATGAAAATAGATC 57.259 39.130 10.52 0.00 0.00 2.75
293 294 3.804325 AGTGCGGACATGAAAATAGATCG 59.196 43.478 10.52 0.00 0.00 3.69
294 295 3.059597 GTGCGGACATGAAAATAGATCGG 60.060 47.826 0.63 0.00 0.00 4.18
295 296 3.131396 GCGGACATGAAAATAGATCGGT 58.869 45.455 0.00 0.00 0.00 4.69
296 297 3.059597 GCGGACATGAAAATAGATCGGTG 60.060 47.826 0.00 0.00 0.00 4.94
297 298 3.059597 CGGACATGAAAATAGATCGGTGC 60.060 47.826 0.00 0.00 0.00 5.01
298 299 3.059597 GGACATGAAAATAGATCGGTGCG 60.060 47.826 0.00 0.00 0.00 5.34
299 300 3.531538 ACATGAAAATAGATCGGTGCGT 58.468 40.909 0.00 0.00 0.00 5.24
300 301 3.938963 ACATGAAAATAGATCGGTGCGTT 59.061 39.130 0.00 0.00 0.00 4.84
301 302 4.201812 ACATGAAAATAGATCGGTGCGTTG 60.202 41.667 0.00 0.00 0.00 4.10
302 303 2.675844 TGAAAATAGATCGGTGCGTTGG 59.324 45.455 0.00 0.00 0.00 3.77
303 304 1.663695 AAATAGATCGGTGCGTTGGG 58.336 50.000 0.00 0.00 0.00 4.12
304 305 0.814010 AATAGATCGGTGCGTTGGGC 60.814 55.000 0.00 0.00 43.96 5.36
321 322 2.046314 CGCACTCCCGACCCAAAT 60.046 61.111 0.00 0.00 0.00 2.32
322 323 2.398554 CGCACTCCCGACCCAAATG 61.399 63.158 0.00 0.00 0.00 2.32
323 324 2.700773 GCACTCCCGACCCAAATGC 61.701 63.158 0.00 0.00 0.00 3.56
324 325 1.303236 CACTCCCGACCCAAATGCA 60.303 57.895 0.00 0.00 0.00 3.96
325 326 0.893270 CACTCCCGACCCAAATGCAA 60.893 55.000 0.00 0.00 0.00 4.08
326 327 0.178975 ACTCCCGACCCAAATGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
327 328 0.965439 CTCCCGACCCAAATGCAAAA 59.035 50.000 0.00 0.00 0.00 2.44
328 329 0.676736 TCCCGACCCAAATGCAAAAC 59.323 50.000 0.00 0.00 0.00 2.43
329 330 0.390860 CCCGACCCAAATGCAAAACA 59.609 50.000 0.00 0.00 0.00 2.83
330 331 1.605202 CCCGACCCAAATGCAAAACAG 60.605 52.381 0.00 0.00 0.00 3.16
331 332 1.605202 CCGACCCAAATGCAAAACAGG 60.605 52.381 0.00 0.00 0.00 4.00
332 333 1.339610 CGACCCAAATGCAAAACAGGA 59.660 47.619 0.00 0.00 0.00 3.86
333 334 2.754472 GACCCAAATGCAAAACAGGAC 58.246 47.619 0.00 0.00 0.00 3.85
334 335 1.068434 ACCCAAATGCAAAACAGGACG 59.932 47.619 0.00 0.00 0.00 4.79
335 336 1.605202 CCCAAATGCAAAACAGGACGG 60.605 52.381 0.00 0.00 0.00 4.79
336 337 1.339610 CCAAATGCAAAACAGGACGGA 59.660 47.619 0.00 0.00 0.00 4.69
337 338 2.393764 CAAATGCAAAACAGGACGGAC 58.606 47.619 0.00 0.00 0.00 4.79
338 339 0.591170 AATGCAAAACAGGACGGACG 59.409 50.000 0.00 0.00 0.00 4.79
339 340 1.852067 ATGCAAAACAGGACGGACGC 61.852 55.000 0.00 0.00 0.00 5.19
340 341 2.943653 CAAAACAGGACGGACGCC 59.056 61.111 0.00 0.00 0.00 5.68
361 362 4.323477 CTGACGGCCGACCCCAAA 62.323 66.667 35.90 8.44 0.00 3.28
362 363 4.629523 TGACGGCCGACCCCAAAC 62.630 66.667 35.90 12.06 0.00 2.93
373 374 4.541085 CGACCCCAAACGGATATAAAAC 57.459 45.455 0.00 0.00 0.00 2.43
374 375 3.001533 CGACCCCAAACGGATATAAAACG 59.998 47.826 0.00 0.00 0.00 3.60
375 376 3.281158 ACCCCAAACGGATATAAAACGG 58.719 45.455 0.00 0.00 0.00 4.44
376 377 3.054508 ACCCCAAACGGATATAAAACGGA 60.055 43.478 0.00 0.00 0.00 4.69
377 378 3.313249 CCCCAAACGGATATAAAACGGAC 59.687 47.826 0.00 0.00 0.00 4.79
378 379 3.940221 CCCAAACGGATATAAAACGGACA 59.060 43.478 0.00 0.00 0.00 4.02
379 380 4.395542 CCCAAACGGATATAAAACGGACAA 59.604 41.667 0.00 0.00 0.00 3.18
380 381 5.106237 CCCAAACGGATATAAAACGGACAAA 60.106 40.000 0.00 0.00 0.00 2.83
381 382 6.404954 CCCAAACGGATATAAAACGGACAAAT 60.405 38.462 0.00 0.00 0.00 2.32
382 383 6.470877 CCAAACGGATATAAAACGGACAAATG 59.529 38.462 0.00 0.00 0.00 2.32
383 384 5.164606 ACGGATATAAAACGGACAAATGC 57.835 39.130 0.00 0.00 0.00 3.56
384 385 4.208355 CGGATATAAAACGGACAAATGCG 58.792 43.478 0.00 0.00 46.59 4.73
385 386 3.972502 GGATATAAAACGGACAAATGCGC 59.027 43.478 0.00 0.00 44.76 6.09
386 387 2.271821 ATAAAACGGACAAATGCGCC 57.728 45.000 4.18 0.00 44.76 6.53
390 391 2.202298 CGGACAAATGCGCCGTTC 60.202 61.111 4.18 0.00 40.17 3.95
391 392 2.202298 GGACAAATGCGCCGTTCG 60.202 61.111 4.18 0.00 42.12 3.95
392 393 2.554272 GACAAATGCGCCGTTCGT 59.446 55.556 4.18 0.00 41.07 3.85
393 394 1.082366 GACAAATGCGCCGTTCGTT 60.082 52.632 4.18 0.00 41.07 3.85
394 395 0.659123 GACAAATGCGCCGTTCGTTT 60.659 50.000 4.18 0.00 41.07 3.60
395 396 0.932585 ACAAATGCGCCGTTCGTTTG 60.933 50.000 4.18 9.13 38.97 2.93
396 397 1.371145 AAATGCGCCGTTCGTTTGG 60.371 52.632 4.18 0.00 41.07 3.28
397 398 2.741116 AAATGCGCCGTTCGTTTGGG 62.741 55.000 4.18 0.00 41.07 4.12
399 400 4.379143 GCGCCGTTCGTTTGGGTC 62.379 66.667 0.00 0.00 41.07 4.46
400 401 4.067016 CGCCGTTCGTTTGGGTCG 62.067 66.667 0.00 0.00 0.00 4.79
401 402 4.379143 GCCGTTCGTTTGGGTCGC 62.379 66.667 0.00 0.00 0.00 5.19
402 403 3.719144 CCGTTCGTTTGGGTCGCC 61.719 66.667 0.00 0.00 0.00 5.54
403 404 3.719144 CGTTCGTTTGGGTCGCCC 61.719 66.667 7.87 7.87 45.71 6.13
412 413 4.324991 GGGTCGCCCGTTGGAGTT 62.325 66.667 0.00 0.00 32.13 3.01
413 414 3.047877 GGTCGCCCGTTGGAGTTG 61.048 66.667 0.00 0.00 32.47 3.16
414 415 3.723348 GTCGCCCGTTGGAGTTGC 61.723 66.667 0.00 0.00 32.47 4.17
415 416 3.936203 TCGCCCGTTGGAGTTGCT 61.936 61.111 0.00 0.00 32.47 3.91
416 417 3.423154 CGCCCGTTGGAGTTGCTC 61.423 66.667 0.00 0.00 0.00 4.26
417 418 2.032681 GCCCGTTGGAGTTGCTCT 59.967 61.111 0.00 0.00 0.00 4.09
418 419 1.295423 GCCCGTTGGAGTTGCTCTA 59.705 57.895 0.00 0.00 0.00 2.43
419 420 0.321298 GCCCGTTGGAGTTGCTCTAA 60.321 55.000 0.00 0.00 0.00 2.10
420 421 1.679032 GCCCGTTGGAGTTGCTCTAAT 60.679 52.381 0.00 0.00 33.81 1.73
421 422 2.009774 CCCGTTGGAGTTGCTCTAATG 58.990 52.381 7.27 7.27 37.60 1.90
422 423 1.398390 CCGTTGGAGTTGCTCTAATGC 59.602 52.381 8.37 0.00 36.89 3.56
423 424 2.350522 CGTTGGAGTTGCTCTAATGCT 58.649 47.619 2.41 0.00 33.81 3.79
424 425 2.349886 CGTTGGAGTTGCTCTAATGCTC 59.650 50.000 2.41 0.00 33.81 4.26
425 426 2.680339 GTTGGAGTTGCTCTAATGCTCC 59.320 50.000 0.00 0.00 44.31 4.70
426 427 2.191400 TGGAGTTGCTCTAATGCTCCT 58.809 47.619 9.83 0.00 44.35 3.69
440 441 6.992715 TCTAATGCTCCTACATAAAAAGCCTC 59.007 38.462 0.00 0.00 31.96 4.70
447 448 4.212214 CCTACATAAAAAGCCTCGCTGATC 59.788 45.833 0.00 0.00 39.62 2.92
460 461 3.375642 TCGCTGATCGATTCTGAATCAC 58.624 45.455 25.32 17.17 43.16 3.06
461 462 3.118542 CGCTGATCGATTCTGAATCACA 58.881 45.455 25.32 19.85 41.67 3.58
510 511 2.486636 TAGCTGTCGCCGTGTTCAGG 62.487 60.000 0.00 0.00 36.60 3.86
538 539 0.178950 TCTCGCTAGGAGATGGCCAT 60.179 55.000 20.96 20.96 46.80 4.40
545 546 3.817647 GCTAGGAGATGGCCATGTAAAAG 59.182 47.826 26.56 17.01 0.00 2.27
547 548 4.591321 AGGAGATGGCCATGTAAAAGAA 57.409 40.909 26.56 0.00 0.00 2.52
548 549 4.934356 AGGAGATGGCCATGTAAAAGAAA 58.066 39.130 26.56 0.00 0.00 2.52
549 550 4.952335 AGGAGATGGCCATGTAAAAGAAAG 59.048 41.667 26.56 0.00 0.00 2.62
550 551 4.098501 GGAGATGGCCATGTAAAAGAAAGG 59.901 45.833 26.56 0.00 0.00 3.11
551 552 4.934356 AGATGGCCATGTAAAAGAAAGGA 58.066 39.130 26.56 0.00 0.00 3.36
552 553 5.332743 AGATGGCCATGTAAAAGAAAGGAA 58.667 37.500 26.56 0.00 0.00 3.36
553 554 5.779771 AGATGGCCATGTAAAAGAAAGGAAA 59.220 36.000 26.56 0.00 0.00 3.13
554 555 5.878406 TGGCCATGTAAAAGAAAGGAAAA 57.122 34.783 0.00 0.00 0.00 2.29
555 556 6.240549 TGGCCATGTAAAAGAAAGGAAAAA 57.759 33.333 0.00 0.00 0.00 1.94
579 589 8.622948 AAAAATCTAGTACTTGTCTGAAAGGG 57.377 34.615 0.00 0.00 0.00 3.95
606 616 3.393970 CTCAAGCTCCCTCCCGCA 61.394 66.667 0.00 0.00 0.00 5.69
622 636 3.052082 CATCGCCCATCATCGCCC 61.052 66.667 0.00 0.00 0.00 6.13
623 637 3.559263 ATCGCCCATCATCGCCCA 61.559 61.111 0.00 0.00 0.00 5.36
735 754 0.252197 ACTAGGAAATGCGGGGTGAC 59.748 55.000 0.00 0.00 0.00 3.67
736 755 0.541863 CTAGGAAATGCGGGGTGACT 59.458 55.000 0.00 0.00 0.00 3.41
737 756 1.760613 CTAGGAAATGCGGGGTGACTA 59.239 52.381 0.00 0.00 0.00 2.59
759 781 3.953775 CCGTCCCACTTGCACCCT 61.954 66.667 0.00 0.00 0.00 4.34
766 792 1.662044 CACTTGCACCCTTCCTTGC 59.338 57.895 0.00 0.00 39.33 4.01
770 796 0.823356 TTGCACCCTTCCTTGCTCAC 60.823 55.000 0.00 0.00 39.62 3.51
865 923 3.250323 CACGATCTCGCGCACTGG 61.250 66.667 8.75 0.00 44.43 4.00
898 973 2.748843 GCGCTCTTGCTTGCTCTCC 61.749 63.158 0.00 0.00 36.97 3.71
949 1027 0.673437 CAAAGCCGCAAAAGGAAGGA 59.327 50.000 0.00 0.00 0.00 3.36
950 1028 1.068434 CAAAGCCGCAAAAGGAAGGAA 59.932 47.619 0.00 0.00 0.00 3.36
951 1029 0.961753 AAGCCGCAAAAGGAAGGAAG 59.038 50.000 0.00 0.00 0.00 3.46
952 1030 0.895559 AGCCGCAAAAGGAAGGAAGG 60.896 55.000 0.00 0.00 0.00 3.46
953 1031 0.893727 GCCGCAAAAGGAAGGAAGGA 60.894 55.000 0.00 0.00 0.00 3.36
954 1032 1.839424 CCGCAAAAGGAAGGAAGGAT 58.161 50.000 0.00 0.00 0.00 3.24
955 1033 2.944094 GCCGCAAAAGGAAGGAAGGATA 60.944 50.000 0.00 0.00 0.00 2.59
956 1034 3.555966 CCGCAAAAGGAAGGAAGGATAT 58.444 45.455 0.00 0.00 0.00 1.63
957 1035 3.565902 CCGCAAAAGGAAGGAAGGATATC 59.434 47.826 0.00 0.00 0.00 1.63
958 1036 3.565902 CGCAAAAGGAAGGAAGGATATCC 59.434 47.826 14.41 14.41 39.96 2.59
959 1037 3.891977 GCAAAAGGAAGGAAGGATATCCC 59.108 47.826 18.56 3.74 40.59 3.85
960 1038 4.631169 GCAAAAGGAAGGAAGGATATCCCA 60.631 45.833 18.56 0.00 40.59 4.37
964 1042 2.057922 GAAGGAAGGATATCCCAGCCA 58.942 52.381 18.56 0.00 40.59 4.75
1071 1151 1.153958 GTCGGGTTTCGTAGGGTCG 60.154 63.158 0.00 0.00 40.32 4.79
1200 1308 5.044558 ACCGCATTCGTAATTTGTTTTTGT 58.955 33.333 0.00 0.00 0.00 2.83
1372 1480 1.899437 GCCCATGGACTTCGACTCCA 61.899 60.000 15.22 12.42 42.17 3.86
1377 1485 3.369892 CCATGGACTTCGACTCCAAAGAT 60.370 47.826 5.56 0.00 41.27 2.40
1391 1499 5.427481 ACTCCAAAGATCCCGAGGTAAATAA 59.573 40.000 0.00 0.00 0.00 1.40
1396 1505 8.947115 CCAAAGATCCCGAGGTAAATAAATATC 58.053 37.037 0.00 0.00 0.00 1.63
1398 1507 7.808279 AGATCCCGAGGTAAATAAATATCCA 57.192 36.000 0.00 0.00 0.00 3.41
1401 1510 4.941873 CCCGAGGTAAATAAATATCCAGGC 59.058 45.833 0.00 0.00 0.00 4.85
1402 1511 5.514136 CCCGAGGTAAATAAATATCCAGGCA 60.514 44.000 0.00 0.00 0.00 4.75
1447 1580 4.512944 CGGAAATACTACTGCTAGTACGGA 59.487 45.833 0.00 0.00 38.12 4.69
1448 1581 5.333952 CGGAAATACTACTGCTAGTACGGAG 60.334 48.000 0.00 0.00 38.12 4.63
1490 1623 2.542020 TGCAGAACGAGGTGATCAAA 57.458 45.000 0.00 0.00 0.00 2.69
1493 1626 2.076863 CAGAACGAGGTGATCAAACCC 58.923 52.381 0.00 0.00 41.54 4.11
1680 1813 0.457851 GACAGGATGGGTGAGACGAG 59.542 60.000 0.00 0.00 43.62 4.18
1686 1823 1.954362 ATGGGTGAGACGAGAGCAGC 61.954 60.000 0.00 0.00 0.00 5.25
1713 1851 2.751166 TCTCTGCCTCTACTTGTTGC 57.249 50.000 0.00 0.00 0.00 4.17
1714 1852 2.251818 TCTCTGCCTCTACTTGTTGCT 58.748 47.619 0.00 0.00 0.00 3.91
1715 1853 3.431415 TCTCTGCCTCTACTTGTTGCTA 58.569 45.455 0.00 0.00 0.00 3.49
1716 1854 4.026744 TCTCTGCCTCTACTTGTTGCTAT 58.973 43.478 0.00 0.00 0.00 2.97
1717 1855 5.201243 TCTCTGCCTCTACTTGTTGCTATA 58.799 41.667 0.00 0.00 0.00 1.31
1718 1856 5.835819 TCTCTGCCTCTACTTGTTGCTATAT 59.164 40.000 0.00 0.00 0.00 0.86
1719 1857 6.325028 TCTCTGCCTCTACTTGTTGCTATATT 59.675 38.462 0.00 0.00 0.00 1.28
1720 1858 7.505923 TCTCTGCCTCTACTTGTTGCTATATTA 59.494 37.037 0.00 0.00 0.00 0.98
1721 1859 7.434492 TCTGCCTCTACTTGTTGCTATATTAC 58.566 38.462 0.00 0.00 0.00 1.89
1722 1860 7.287927 TCTGCCTCTACTTGTTGCTATATTACT 59.712 37.037 0.00 0.00 0.00 2.24
1723 1861 7.792032 TGCCTCTACTTGTTGCTATATTACTT 58.208 34.615 0.00 0.00 0.00 2.24
1724 1862 7.710907 TGCCTCTACTTGTTGCTATATTACTTG 59.289 37.037 0.00 0.00 0.00 3.16
1725 1863 7.711339 GCCTCTACTTGTTGCTATATTACTTGT 59.289 37.037 0.00 0.00 0.00 3.16
1726 1864 9.035607 CCTCTACTTGTTGCTATATTACTTGTG 57.964 37.037 0.00 0.00 0.00 3.33
1727 1865 8.942338 TCTACTTGTTGCTATATTACTTGTGG 57.058 34.615 0.00 0.00 0.00 4.17
1728 1866 6.436843 ACTTGTTGCTATATTACTTGTGGC 57.563 37.500 0.00 0.00 0.00 5.01
1729 1867 5.943416 ACTTGTTGCTATATTACTTGTGGCA 59.057 36.000 0.00 0.00 0.00 4.92
1735 1873 5.417266 TGCTATATTACTTGTGGCAAAGCAA 59.583 36.000 8.64 4.26 33.66 3.91
1749 1887 4.201744 GGCAAAGCAACAATAATGACATGC 60.202 41.667 0.00 0.00 35.74 4.06
1750 1888 4.491280 GCAAAGCAACAATAATGACATGCG 60.491 41.667 0.00 0.00 38.36 4.73
1793 1931 0.680061 ACTTCGTGTCCAAGTCCCTC 59.320 55.000 0.00 0.00 27.00 4.30
1865 2003 1.739667 CATCATCCCCACGCTCGTA 59.260 57.895 0.00 0.00 0.00 3.43
1928 2066 4.783621 GCCCTGGCGCTCATCACA 62.784 66.667 7.64 0.00 0.00 3.58
1934 2072 1.153086 GGCGCTCATCACAGGGAAT 60.153 57.895 7.64 0.00 0.00 3.01
1937 2075 2.013563 GCGCTCATCACAGGGAATGAA 61.014 52.381 0.00 0.00 0.00 2.57
1973 2111 2.596631 AAGCAGGTGCAGCTGGTG 60.597 61.111 41.21 22.57 42.53 4.17
2132 2270 4.389576 CCGCACAAGTTCGCAGGC 62.390 66.667 0.00 0.00 0.00 4.85
2222 2360 1.671054 CACCGCCGAGGACATGTTT 60.671 57.895 0.00 0.00 45.00 2.83
2551 2692 6.202331 TCACTACTCCCTCTGATCCAAAATA 58.798 40.000 0.00 0.00 0.00 1.40
2559 2700 5.945784 CCCTCTGATCCAAAATAAAGTGTCA 59.054 40.000 0.00 0.00 0.00 3.58
2619 2796 2.584835 ACTTGGGCTGAATGTTGCTA 57.415 45.000 0.00 0.00 0.00 3.49
2777 2955 3.265489 ACCTAATTTCCTGTTCCCCAGA 58.735 45.455 0.00 0.00 44.49 3.86
2825 3003 0.466555 TCTCCCCTCTTAGCGCTCTC 60.467 60.000 16.34 0.00 0.00 3.20
2827 3005 2.725008 CCCTCTTAGCGCTCTCCG 59.275 66.667 16.34 0.73 40.75 4.63
2860 3038 0.106769 TCCAAGCTTCCTGCACAACA 60.107 50.000 0.00 0.00 45.94 3.33
2962 3140 4.973663 CAGGTTTTTACTAGTTTGGCGTTG 59.026 41.667 0.00 0.00 0.00 4.10
2974 3152 4.097892 AGTTTGGCGTTGATGAAAAAGTCT 59.902 37.500 0.00 0.00 0.00 3.24
2981 3159 5.688823 CGTTGATGAAAAAGTCTGCATGTA 58.311 37.500 0.00 0.00 0.00 2.29
3040 3218 6.183360 ACAAACGCACCTTAAGAAGATCAAAA 60.183 34.615 3.36 0.00 0.00 2.44
3214 3392 2.026822 ACCAAGTATCTGCCCACAAGAG 60.027 50.000 0.00 0.00 0.00 2.85
3217 3395 4.326826 CAAGTATCTGCCCACAAGAGAAA 58.673 43.478 0.00 0.00 0.00 2.52
3285 3463 8.877864 TTTGACTGATGGGTAGTTTAATTCAT 57.122 30.769 0.00 0.00 0.00 2.57
3350 3528 4.978083 ACAGAATTGATCCAAGCATGAC 57.022 40.909 0.00 0.00 0.00 3.06
3351 3529 4.597004 ACAGAATTGATCCAAGCATGACT 58.403 39.130 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.534805 CCACGAGATCACTCATCGGTG 60.535 57.143 6.31 0.00 42.72 4.94
2 3 0.741326 CCACGAGATCACTCATCGGT 59.259 55.000 6.31 0.00 42.72 4.69
3 4 0.596083 GCCACGAGATCACTCATCGG 60.596 60.000 6.31 0.00 42.72 4.18
4 5 0.101219 TGCCACGAGATCACTCATCG 59.899 55.000 0.00 0.00 42.72 3.84
5 6 1.850377 CTGCCACGAGATCACTCATC 58.150 55.000 0.00 0.00 42.72 2.92
6 7 0.179089 GCTGCCACGAGATCACTCAT 60.179 55.000 0.00 0.00 42.72 2.90
7 8 1.216444 GCTGCCACGAGATCACTCA 59.784 57.895 0.00 0.00 42.72 3.41
8 9 1.875813 CGCTGCCACGAGATCACTC 60.876 63.158 0.00 0.00 39.54 3.51
9 10 2.182791 CGCTGCCACGAGATCACT 59.817 61.111 0.00 0.00 34.06 3.41
10 11 2.181777 TCGCTGCCACGAGATCAC 59.818 61.111 0.00 0.00 37.09 3.06
21 22 2.463675 AAAAAGAAGGCGCTCGCTGC 62.464 55.000 7.64 0.00 41.60 5.25
22 23 1.576421 AAAAAGAAGGCGCTCGCTG 59.424 52.632 7.64 0.00 41.60 5.18
23 24 4.065110 AAAAAGAAGGCGCTCGCT 57.935 50.000 7.64 0.00 41.60 4.93
38 39 2.287909 GGCACACAAGCCGACATAAAAA 60.288 45.455 0.00 0.00 46.12 1.94
39 40 1.268352 GGCACACAAGCCGACATAAAA 59.732 47.619 0.00 0.00 46.12 1.52
40 41 0.878416 GGCACACAAGCCGACATAAA 59.122 50.000 0.00 0.00 46.12 1.40
41 42 2.550487 GGCACACAAGCCGACATAA 58.450 52.632 0.00 0.00 46.12 1.90
42 43 4.294523 GGCACACAAGCCGACATA 57.705 55.556 0.00 0.00 46.12 2.29
49 50 3.364441 TCATGCCGGCACACAAGC 61.364 61.111 35.50 0.00 0.00 4.01
50 51 2.562912 GTCATGCCGGCACACAAG 59.437 61.111 35.50 19.13 0.00 3.16
51 52 2.983030 GGTCATGCCGGCACACAA 60.983 61.111 35.50 14.91 0.00 3.33
52 53 3.565961 ATGGTCATGCCGGCACACA 62.566 57.895 35.50 26.85 41.21 3.72
53 54 2.751436 ATGGTCATGCCGGCACAC 60.751 61.111 35.50 29.63 41.21 3.82
54 55 2.751036 CATGGTCATGCCGGCACA 60.751 61.111 35.50 25.87 41.21 4.57
55 56 3.520862 CCATGGTCATGCCGGCAC 61.521 66.667 35.50 20.34 41.21 5.01
56 57 4.818863 CCCATGGTCATGCCGGCA 62.819 66.667 34.80 34.80 41.21 5.69
58 59 4.127744 ACCCCATGGTCATGCCGG 62.128 66.667 11.73 5.14 43.06 6.13
67 68 2.417257 CGCCATCACAACCCCATGG 61.417 63.158 4.14 4.14 40.24 3.66
68 69 1.678635 ACGCCATCACAACCCCATG 60.679 57.895 0.00 0.00 0.00 3.66
69 70 1.678635 CACGCCATCACAACCCCAT 60.679 57.895 0.00 0.00 0.00 4.00
70 71 2.282110 CACGCCATCACAACCCCA 60.282 61.111 0.00 0.00 0.00 4.96
71 72 3.061848 CCACGCCATCACAACCCC 61.062 66.667 0.00 0.00 0.00 4.95
72 73 2.282180 ACCACGCCATCACAACCC 60.282 61.111 0.00 0.00 0.00 4.11
73 74 1.169661 TTGACCACGCCATCACAACC 61.170 55.000 0.00 0.00 0.00 3.77
74 75 0.665835 TTTGACCACGCCATCACAAC 59.334 50.000 0.00 0.00 0.00 3.32
75 76 0.665835 GTTTGACCACGCCATCACAA 59.334 50.000 0.00 0.00 0.00 3.33
76 77 0.179032 AGTTTGACCACGCCATCACA 60.179 50.000 0.00 0.00 0.00 3.58
77 78 0.517316 GAGTTTGACCACGCCATCAC 59.483 55.000 0.00 0.00 0.00 3.06
78 79 0.107643 TGAGTTTGACCACGCCATCA 59.892 50.000 0.00 0.00 0.00 3.07
79 80 1.234821 TTGAGTTTGACCACGCCATC 58.765 50.000 0.00 0.00 0.00 3.51
80 81 1.686355 TTTGAGTTTGACCACGCCAT 58.314 45.000 0.00 0.00 0.00 4.40
81 82 1.606668 GATTTGAGTTTGACCACGCCA 59.393 47.619 0.00 0.00 0.00 5.69
82 83 1.068541 GGATTTGAGTTTGACCACGCC 60.069 52.381 0.00 0.00 0.00 5.68
83 84 1.068541 GGGATTTGAGTTTGACCACGC 60.069 52.381 0.00 0.00 0.00 5.34
84 85 2.031157 GTGGGATTTGAGTTTGACCACG 60.031 50.000 0.00 0.00 37.71 4.94
85 86 2.296190 GGTGGGATTTGAGTTTGACCAC 59.704 50.000 0.00 0.00 44.55 4.16
86 87 2.593026 GGTGGGATTTGAGTTTGACCA 58.407 47.619 0.00 0.00 0.00 4.02
87 88 1.893137 GGGTGGGATTTGAGTTTGACC 59.107 52.381 0.00 0.00 0.00 4.02
88 89 1.893137 GGGGTGGGATTTGAGTTTGAC 59.107 52.381 0.00 0.00 0.00 3.18
89 90 1.786441 AGGGGTGGGATTTGAGTTTGA 59.214 47.619 0.00 0.00 0.00 2.69
90 91 2.309136 AGGGGTGGGATTTGAGTTTG 57.691 50.000 0.00 0.00 0.00 2.93
91 92 3.344535 AAAGGGGTGGGATTTGAGTTT 57.655 42.857 0.00 0.00 0.00 2.66
92 93 3.344535 AAAAGGGGTGGGATTTGAGTT 57.655 42.857 0.00 0.00 0.00 3.01
93 94 2.972021 CAAAAAGGGGTGGGATTTGAGT 59.028 45.455 0.00 0.00 33.86 3.41
94 95 2.972021 ACAAAAAGGGGTGGGATTTGAG 59.028 45.455 3.81 0.00 35.52 3.02
95 96 2.703007 CACAAAAAGGGGTGGGATTTGA 59.297 45.455 3.81 0.00 35.52 2.69
96 97 2.437651 ACACAAAAAGGGGTGGGATTTG 59.562 45.455 0.00 0.00 39.31 2.32
97 98 2.437651 CACACAAAAAGGGGTGGGATTT 59.562 45.455 0.00 0.00 40.89 2.17
98 99 2.046292 CACACAAAAAGGGGTGGGATT 58.954 47.619 0.00 0.00 40.89 3.01
99 100 1.062505 ACACACAAAAAGGGGTGGGAT 60.063 47.619 0.46 0.00 40.89 3.85
100 101 0.336737 ACACACAAAAAGGGGTGGGA 59.663 50.000 0.46 0.00 40.89 4.37
101 102 1.134551 CAACACACAAAAAGGGGTGGG 60.135 52.381 0.28 0.00 43.96 4.61
102 103 1.134551 CCAACACACAAAAAGGGGTGG 60.135 52.381 0.28 0.00 39.31 4.61
103 104 1.742071 GCCAACACACAAAAAGGGGTG 60.742 52.381 0.00 0.00 40.78 4.61
104 105 0.539518 GCCAACACACAAAAAGGGGT 59.460 50.000 0.00 0.00 0.00 4.95
105 106 0.539051 TGCCAACACACAAAAAGGGG 59.461 50.000 0.00 0.00 0.00 4.79
106 107 2.211806 CATGCCAACACACAAAAAGGG 58.788 47.619 0.00 0.00 0.00 3.95
107 108 2.608546 CACATGCCAACACACAAAAAGG 59.391 45.455 0.00 0.00 0.00 3.11
108 109 3.062369 CACACATGCCAACACACAAAAAG 59.938 43.478 0.00 0.00 0.00 2.27
109 110 2.998670 CACACATGCCAACACACAAAAA 59.001 40.909 0.00 0.00 0.00 1.94
110 111 2.614779 CACACATGCCAACACACAAAA 58.385 42.857 0.00 0.00 0.00 2.44
111 112 1.738365 GCACACATGCCAACACACAAA 60.738 47.619 0.00 0.00 46.97 2.83
112 113 0.179116 GCACACATGCCAACACACAA 60.179 50.000 0.00 0.00 46.97 3.33
113 114 1.436748 GCACACATGCCAACACACA 59.563 52.632 0.00 0.00 46.97 3.72
114 115 4.324424 GCACACATGCCAACACAC 57.676 55.556 0.00 0.00 46.97 3.82
146 147 2.828095 ACACTTTGTGCTGGCGCA 60.828 55.556 10.83 4.63 45.60 6.09
147 148 2.353839 CACACTTTGTGCTGGCGC 60.354 61.111 0.00 0.00 41.89 6.53
173 174 4.390297 GCATACATTGCCGGCTTTTAAAAA 59.610 37.500 29.70 12.18 46.15 1.94
174 175 3.929610 GCATACATTGCCGGCTTTTAAAA 59.070 39.130 29.70 13.02 46.15 1.52
175 176 3.516615 GCATACATTGCCGGCTTTTAAA 58.483 40.909 29.70 13.86 46.15 1.52
176 177 3.157932 GCATACATTGCCGGCTTTTAA 57.842 42.857 29.70 14.30 46.15 1.52
177 178 2.861462 GCATACATTGCCGGCTTTTA 57.139 45.000 29.70 13.70 46.15 1.52
178 179 3.739077 GCATACATTGCCGGCTTTT 57.261 47.368 29.70 11.78 46.15 2.27
187 188 2.328989 CAGCGCCGGCATACATTG 59.671 61.111 28.98 9.29 43.41 2.82
188 189 2.901840 CCAGCGCCGGCATACATT 60.902 61.111 28.98 0.92 43.41 2.71
205 206 0.311165 GTCTCATGCTGGCATCATGC 59.689 55.000 22.96 0.00 44.08 4.06
206 207 1.675552 TGTCTCATGCTGGCATCATG 58.324 50.000 22.03 22.03 41.87 3.07
207 208 2.230660 CATGTCTCATGCTGGCATCAT 58.769 47.619 4.98 0.00 33.90 2.45
208 209 1.675552 CATGTCTCATGCTGGCATCA 58.324 50.000 4.98 0.00 33.90 3.07
209 210 0.952280 CCATGTCTCATGCTGGCATC 59.048 55.000 4.98 0.00 33.90 3.91
210 211 3.111405 CCATGTCTCATGCTGGCAT 57.889 52.632 1.86 1.86 37.08 4.40
211 212 4.649845 CCATGTCTCATGCTGGCA 57.350 55.556 0.00 0.00 0.00 4.92
212 213 3.117372 GCCATGTCTCATGCTGGC 58.883 61.111 4.43 0.00 46.54 4.85
213 214 2.184830 CGGCCATGTCTCATGCTGG 61.185 63.158 2.24 0.00 0.00 4.85
214 215 2.831366 GCGGCCATGTCTCATGCTG 61.831 63.158 2.24 6.47 0.00 4.41
215 216 2.515523 GCGGCCATGTCTCATGCT 60.516 61.111 2.24 0.00 0.00 3.79
216 217 2.515523 AGCGGCCATGTCTCATGC 60.516 61.111 2.24 0.00 0.00 4.06
217 218 1.153309 TCAGCGGCCATGTCTCATG 60.153 57.895 2.24 3.11 0.00 3.07
218 219 1.153289 GTCAGCGGCCATGTCTCAT 60.153 57.895 2.24 0.00 0.00 2.90
219 220 1.902765 ATGTCAGCGGCCATGTCTCA 61.903 55.000 2.24 3.50 0.00 3.27
220 221 1.153289 ATGTCAGCGGCCATGTCTC 60.153 57.895 2.24 0.00 0.00 3.36
221 222 1.450848 CATGTCAGCGGCCATGTCT 60.451 57.895 2.24 0.00 34.97 3.41
222 223 0.816825 ATCATGTCAGCGGCCATGTC 60.817 55.000 7.71 0.00 39.53 3.06
223 224 0.816825 GATCATGTCAGCGGCCATGT 60.817 55.000 7.71 0.00 39.53 3.21
224 225 0.534427 AGATCATGTCAGCGGCCATG 60.534 55.000 2.24 1.17 39.82 3.66
225 226 1.051008 TAGATCATGTCAGCGGCCAT 58.949 50.000 2.24 0.00 0.00 4.40
226 227 1.051008 ATAGATCATGTCAGCGGCCA 58.949 50.000 2.24 0.00 0.00 5.36
227 228 1.436600 CATAGATCATGTCAGCGGCC 58.563 55.000 0.00 0.00 0.00 6.13
228 229 1.436600 CCATAGATCATGTCAGCGGC 58.563 55.000 0.00 0.00 32.21 6.53
229 230 1.436600 GCCATAGATCATGTCAGCGG 58.563 55.000 0.00 0.00 32.21 5.52
230 231 1.436600 GGCCATAGATCATGTCAGCG 58.563 55.000 0.00 0.00 32.21 5.18
231 232 1.270518 ACGGCCATAGATCATGTCAGC 60.271 52.381 2.24 0.00 32.21 4.26
232 233 2.410939 CACGGCCATAGATCATGTCAG 58.589 52.381 2.24 0.00 32.21 3.51
233 234 1.070601 CCACGGCCATAGATCATGTCA 59.929 52.381 2.24 0.00 32.21 3.58
234 235 1.609061 CCCACGGCCATAGATCATGTC 60.609 57.143 2.24 0.00 32.21 3.06
235 236 0.397941 CCCACGGCCATAGATCATGT 59.602 55.000 2.24 0.00 32.21 3.21
236 237 0.397941 ACCCACGGCCATAGATCATG 59.602 55.000 2.24 0.00 0.00 3.07
237 238 0.687354 GACCCACGGCCATAGATCAT 59.313 55.000 2.24 0.00 0.00 2.45
238 239 1.407656 GGACCCACGGCCATAGATCA 61.408 60.000 2.24 0.00 0.00 2.92
239 240 1.122019 AGGACCCACGGCCATAGATC 61.122 60.000 2.24 0.00 0.00 2.75
240 241 0.694444 AAGGACCCACGGCCATAGAT 60.694 55.000 2.24 0.00 0.00 1.98
241 242 0.912487 AAAGGACCCACGGCCATAGA 60.912 55.000 2.24 0.00 0.00 1.98
242 243 0.034477 AAAAGGACCCACGGCCATAG 60.034 55.000 2.24 0.00 0.00 2.23
243 244 0.406361 AAAAAGGACCCACGGCCATA 59.594 50.000 2.24 0.00 0.00 2.74
244 245 0.406361 TAAAAAGGACCCACGGCCAT 59.594 50.000 2.24 0.00 0.00 4.40
245 246 0.185416 TTAAAAAGGACCCACGGCCA 59.815 50.000 2.24 0.00 0.00 5.36
246 247 1.330234 TTTAAAAAGGACCCACGGCC 58.670 50.000 0.00 0.00 0.00 6.13
247 248 3.671008 ATTTTAAAAAGGACCCACGGC 57.329 42.857 4.44 0.00 0.00 5.68
248 249 7.170151 CACTTAAATTTTAAAAAGGACCCACGG 59.830 37.037 4.44 0.00 0.00 4.94
249 250 7.306925 GCACTTAAATTTTAAAAAGGACCCACG 60.307 37.037 4.44 0.00 0.00 4.94
250 251 7.306925 CGCACTTAAATTTTAAAAAGGACCCAC 60.307 37.037 4.44 0.00 0.00 4.61
251 252 6.702282 CGCACTTAAATTTTAAAAAGGACCCA 59.298 34.615 4.44 0.00 0.00 4.51
252 253 6.146510 CCGCACTTAAATTTTAAAAAGGACCC 59.853 38.462 4.44 0.00 0.00 4.46
253 254 6.924612 TCCGCACTTAAATTTTAAAAAGGACC 59.075 34.615 4.44 0.00 0.00 4.46
254 255 7.435784 TGTCCGCACTTAAATTTTAAAAAGGAC 59.564 33.333 22.39 22.39 41.40 3.85
255 256 7.490000 TGTCCGCACTTAAATTTTAAAAAGGA 58.510 30.769 4.44 6.90 0.00 3.36
256 257 7.701809 TGTCCGCACTTAAATTTTAAAAAGG 57.298 32.000 4.44 5.08 0.00 3.11
257 258 8.973378 TCATGTCCGCACTTAAATTTTAAAAAG 58.027 29.630 4.44 0.34 0.00 2.27
258 259 8.873215 TCATGTCCGCACTTAAATTTTAAAAA 57.127 26.923 4.44 0.00 0.00 1.94
259 260 8.873215 TTCATGTCCGCACTTAAATTTTAAAA 57.127 26.923 2.51 2.51 0.00 1.52
260 261 8.873215 TTTCATGTCCGCACTTAAATTTTAAA 57.127 26.923 0.00 0.00 0.00 1.52
261 262 8.873215 TTTTCATGTCCGCACTTAAATTTTAA 57.127 26.923 0.00 1.85 0.00 1.52
263 264 7.961325 ATTTTCATGTCCGCACTTAAATTTT 57.039 28.000 0.00 0.00 0.00 1.82
264 265 8.519526 TCTATTTTCATGTCCGCACTTAAATTT 58.480 29.630 0.00 0.00 0.00 1.82
265 266 8.050778 TCTATTTTCATGTCCGCACTTAAATT 57.949 30.769 0.00 0.00 0.00 1.82
266 267 7.624360 TCTATTTTCATGTCCGCACTTAAAT 57.376 32.000 0.00 0.00 0.00 1.40
267 268 7.465379 CGATCTATTTTCATGTCCGCACTTAAA 60.465 37.037 0.00 0.00 0.00 1.52
268 269 6.019075 CGATCTATTTTCATGTCCGCACTTAA 60.019 38.462 0.00 0.00 0.00 1.85
269 270 5.462068 CGATCTATTTTCATGTCCGCACTTA 59.538 40.000 0.00 0.00 0.00 2.24
270 271 4.271049 CGATCTATTTTCATGTCCGCACTT 59.729 41.667 0.00 0.00 0.00 3.16
271 272 3.804325 CGATCTATTTTCATGTCCGCACT 59.196 43.478 0.00 0.00 0.00 4.40
272 273 3.059597 CCGATCTATTTTCATGTCCGCAC 60.060 47.826 0.00 0.00 0.00 5.34
273 274 3.130633 CCGATCTATTTTCATGTCCGCA 58.869 45.455 0.00 0.00 0.00 5.69
274 275 3.059597 CACCGATCTATTTTCATGTCCGC 60.060 47.826 0.00 0.00 0.00 5.54
275 276 3.059597 GCACCGATCTATTTTCATGTCCG 60.060 47.826 0.00 0.00 0.00 4.79
276 277 3.059597 CGCACCGATCTATTTTCATGTCC 60.060 47.826 0.00 0.00 0.00 4.02
277 278 3.555956 ACGCACCGATCTATTTTCATGTC 59.444 43.478 0.00 0.00 0.00 3.06
278 279 3.531538 ACGCACCGATCTATTTTCATGT 58.468 40.909 0.00 0.00 0.00 3.21
279 280 4.274069 CAACGCACCGATCTATTTTCATG 58.726 43.478 0.00 0.00 0.00 3.07
280 281 3.312421 CCAACGCACCGATCTATTTTCAT 59.688 43.478 0.00 0.00 0.00 2.57
281 282 2.675844 CCAACGCACCGATCTATTTTCA 59.324 45.455 0.00 0.00 0.00 2.69
282 283 2.031683 CCCAACGCACCGATCTATTTTC 59.968 50.000 0.00 0.00 0.00 2.29
283 284 2.014128 CCCAACGCACCGATCTATTTT 58.986 47.619 0.00 0.00 0.00 1.82
284 285 1.663695 CCCAACGCACCGATCTATTT 58.336 50.000 0.00 0.00 0.00 1.40
285 286 0.814010 GCCCAACGCACCGATCTATT 60.814 55.000 0.00 0.00 37.47 1.73
286 287 1.227556 GCCCAACGCACCGATCTAT 60.228 57.895 0.00 0.00 37.47 1.98
287 288 2.185867 GCCCAACGCACCGATCTA 59.814 61.111 0.00 0.00 37.47 1.98
304 305 2.046314 ATTTGGGTCGGGAGTGCG 60.046 61.111 0.00 0.00 0.00 5.34
305 306 2.700773 GCATTTGGGTCGGGAGTGC 61.701 63.158 0.00 0.00 0.00 4.40
306 307 0.893270 TTGCATTTGGGTCGGGAGTG 60.893 55.000 0.00 0.00 0.00 3.51
307 308 0.178975 TTTGCATTTGGGTCGGGAGT 60.179 50.000 0.00 0.00 0.00 3.85
308 309 0.965439 TTTTGCATTTGGGTCGGGAG 59.035 50.000 0.00 0.00 0.00 4.30
309 310 0.676736 GTTTTGCATTTGGGTCGGGA 59.323 50.000 0.00 0.00 0.00 5.14
310 311 0.390860 TGTTTTGCATTTGGGTCGGG 59.609 50.000 0.00 0.00 0.00 5.14
311 312 1.605202 CCTGTTTTGCATTTGGGTCGG 60.605 52.381 0.00 0.00 0.00 4.79
312 313 1.339610 TCCTGTTTTGCATTTGGGTCG 59.660 47.619 0.00 0.00 0.00 4.79
313 314 2.754472 GTCCTGTTTTGCATTTGGGTC 58.246 47.619 0.00 0.00 0.00 4.46
314 315 1.068434 CGTCCTGTTTTGCATTTGGGT 59.932 47.619 0.00 0.00 0.00 4.51
315 316 1.605202 CCGTCCTGTTTTGCATTTGGG 60.605 52.381 0.00 0.00 0.00 4.12
316 317 1.339610 TCCGTCCTGTTTTGCATTTGG 59.660 47.619 0.00 0.00 0.00 3.28
317 318 2.393764 GTCCGTCCTGTTTTGCATTTG 58.606 47.619 0.00 0.00 0.00 2.32
318 319 1.001815 CGTCCGTCCTGTTTTGCATTT 60.002 47.619 0.00 0.00 0.00 2.32
319 320 0.591170 CGTCCGTCCTGTTTTGCATT 59.409 50.000 0.00 0.00 0.00 3.56
320 321 1.852067 GCGTCCGTCCTGTTTTGCAT 61.852 55.000 0.00 0.00 0.00 3.96
321 322 2.539338 GCGTCCGTCCTGTTTTGCA 61.539 57.895 0.00 0.00 0.00 4.08
322 323 2.251371 GCGTCCGTCCTGTTTTGC 59.749 61.111 0.00 0.00 0.00 3.68
323 324 2.943653 GGCGTCCGTCCTGTTTTG 59.056 61.111 0.00 0.00 0.00 2.44
324 325 2.663852 CGGCGTCCGTCCTGTTTT 60.664 61.111 9.69 0.00 42.73 2.43
325 326 4.675029 CCGGCGTCCGTCCTGTTT 62.675 66.667 15.38 0.00 46.80 2.83
344 345 4.323477 TTTGGGGTCGGCCGTCAG 62.323 66.667 27.15 0.00 34.97 3.51
345 346 4.629523 GTTTGGGGTCGGCCGTCA 62.630 66.667 27.15 16.21 34.97 4.35
349 350 2.333701 ATATCCGTTTGGGGTCGGCC 62.334 60.000 0.00 0.00 45.44 6.13
350 351 0.393820 TATATCCGTTTGGGGTCGGC 59.606 55.000 0.00 0.00 45.44 5.54
351 352 2.914695 TTATATCCGTTTGGGGTCGG 57.085 50.000 0.00 0.00 46.93 4.79
352 353 3.001533 CGTTTTATATCCGTTTGGGGTCG 59.998 47.826 0.00 0.00 36.01 4.79
353 354 3.313249 CCGTTTTATATCCGTTTGGGGTC 59.687 47.826 0.00 0.00 36.01 4.46
354 355 3.054508 TCCGTTTTATATCCGTTTGGGGT 60.055 43.478 0.00 0.00 36.01 4.95
355 356 3.313249 GTCCGTTTTATATCCGTTTGGGG 59.687 47.826 0.00 0.00 36.01 4.96
356 357 3.940221 TGTCCGTTTTATATCCGTTTGGG 59.060 43.478 0.00 0.00 35.24 4.12
357 358 5.548706 TTGTCCGTTTTATATCCGTTTGG 57.451 39.130 0.00 0.00 0.00 3.28
358 359 6.020995 GCATTTGTCCGTTTTATATCCGTTTG 60.021 38.462 0.00 0.00 0.00 2.93
359 360 6.031471 GCATTTGTCCGTTTTATATCCGTTT 58.969 36.000 0.00 0.00 0.00 3.60
360 361 5.575019 GCATTTGTCCGTTTTATATCCGTT 58.425 37.500 0.00 0.00 0.00 4.44
361 362 4.260456 CGCATTTGTCCGTTTTATATCCGT 60.260 41.667 0.00 0.00 0.00 4.69
362 363 4.208355 CGCATTTGTCCGTTTTATATCCG 58.792 43.478 0.00 0.00 0.00 4.18
363 364 3.972502 GCGCATTTGTCCGTTTTATATCC 59.027 43.478 0.30 0.00 0.00 2.59
364 365 3.972502 GGCGCATTTGTCCGTTTTATATC 59.027 43.478 10.83 0.00 0.00 1.63
365 366 3.547214 CGGCGCATTTGTCCGTTTTATAT 60.547 43.478 10.83 0.00 38.47 0.86
366 367 2.223066 CGGCGCATTTGTCCGTTTTATA 60.223 45.455 10.83 0.00 38.47 0.98
367 368 1.466697 CGGCGCATTTGTCCGTTTTAT 60.467 47.619 10.83 0.00 38.47 1.40
368 369 0.110147 CGGCGCATTTGTCCGTTTTA 60.110 50.000 10.83 0.00 38.47 1.52
369 370 1.371145 CGGCGCATTTGTCCGTTTT 60.371 52.632 10.83 0.00 38.47 2.43
370 371 2.254051 CGGCGCATTTGTCCGTTT 59.746 55.556 10.83 0.00 38.47 3.60
374 375 2.202298 CGAACGGCGCATTTGTCC 60.202 61.111 10.83 0.00 0.00 4.02
375 376 0.659123 AAACGAACGGCGCATTTGTC 60.659 50.000 10.83 0.00 46.04 3.18
376 377 0.932585 CAAACGAACGGCGCATTTGT 60.933 50.000 10.83 10.32 46.04 2.83
377 378 1.604612 CCAAACGAACGGCGCATTTG 61.605 55.000 10.83 12.30 46.04 2.32
378 379 1.371145 CCAAACGAACGGCGCATTT 60.371 52.632 10.83 0.00 46.04 2.32
379 380 2.254051 CCAAACGAACGGCGCATT 59.746 55.556 10.83 1.87 46.04 3.56
380 381 3.732892 CCCAAACGAACGGCGCAT 61.733 61.111 10.83 0.00 46.04 4.73
382 383 4.379143 GACCCAAACGAACGGCGC 62.379 66.667 6.90 0.00 46.04 6.53
384 385 4.379143 GCGACCCAAACGAACGGC 62.379 66.667 0.00 0.00 0.00 5.68
385 386 3.719144 GGCGACCCAAACGAACGG 61.719 66.667 0.00 0.00 0.00 4.44
397 398 3.723348 GCAACTCCAACGGGCGAC 61.723 66.667 0.00 0.00 0.00 5.19
398 399 3.876589 GAGCAACTCCAACGGGCGA 62.877 63.158 0.00 0.00 0.00 5.54
399 400 2.501223 TAGAGCAACTCCAACGGGCG 62.501 60.000 0.00 0.00 0.00 6.13
400 401 0.321298 TTAGAGCAACTCCAACGGGC 60.321 55.000 0.00 0.00 0.00 6.13
401 402 2.009774 CATTAGAGCAACTCCAACGGG 58.990 52.381 0.00 0.00 0.00 5.28
402 403 1.398390 GCATTAGAGCAACTCCAACGG 59.602 52.381 0.00 0.00 0.00 4.44
403 404 2.349886 GAGCATTAGAGCAACTCCAACG 59.650 50.000 0.00 0.00 36.85 4.10
404 405 2.680339 GGAGCATTAGAGCAACTCCAAC 59.320 50.000 2.54 0.00 45.16 3.77
405 406 2.991250 GGAGCATTAGAGCAACTCCAA 58.009 47.619 2.54 0.00 45.16 3.53
406 407 2.698855 GGAGCATTAGAGCAACTCCA 57.301 50.000 2.54 0.00 45.16 3.86
407 408 2.998316 AGGAGCATTAGAGCAACTCC 57.002 50.000 0.00 0.00 45.99 3.85
408 409 4.392921 TGTAGGAGCATTAGAGCAACTC 57.607 45.455 0.00 0.00 36.85 3.01
409 410 6.485830 TTATGTAGGAGCATTAGAGCAACT 57.514 37.500 0.00 0.00 36.85 3.16
410 411 7.553881 TTTTATGTAGGAGCATTAGAGCAAC 57.446 36.000 0.00 0.00 36.85 4.17
411 412 7.201732 GCTTTTTATGTAGGAGCATTAGAGCAA 60.202 37.037 0.00 0.00 36.85 3.91
412 413 6.260936 GCTTTTTATGTAGGAGCATTAGAGCA 59.739 38.462 0.00 0.00 36.85 4.26
413 414 6.293680 GGCTTTTTATGTAGGAGCATTAGAGC 60.294 42.308 0.00 0.00 35.12 4.09
414 415 6.995091 AGGCTTTTTATGTAGGAGCATTAGAG 59.005 38.462 0.00 0.00 35.12 2.43
415 416 6.900194 AGGCTTTTTATGTAGGAGCATTAGA 58.100 36.000 0.00 0.00 35.12 2.10
416 417 6.073548 CGAGGCTTTTTATGTAGGAGCATTAG 60.074 42.308 0.00 0.00 35.12 1.73
417 418 5.758296 CGAGGCTTTTTATGTAGGAGCATTA 59.242 40.000 0.00 0.00 35.12 1.90
418 419 4.576463 CGAGGCTTTTTATGTAGGAGCATT 59.424 41.667 0.00 0.00 35.12 3.56
419 420 4.130118 CGAGGCTTTTTATGTAGGAGCAT 58.870 43.478 0.00 0.00 35.12 3.79
420 421 3.531538 CGAGGCTTTTTATGTAGGAGCA 58.468 45.455 0.00 0.00 35.12 4.26
421 422 2.288186 GCGAGGCTTTTTATGTAGGAGC 59.712 50.000 0.00 0.00 0.00 4.70
422 423 3.557595 CAGCGAGGCTTTTTATGTAGGAG 59.442 47.826 0.00 0.00 36.40 3.69
423 424 3.196901 TCAGCGAGGCTTTTTATGTAGGA 59.803 43.478 0.00 0.00 36.40 2.94
424 425 3.531538 TCAGCGAGGCTTTTTATGTAGG 58.468 45.455 0.00 0.00 36.40 3.18
425 426 4.084849 CGATCAGCGAGGCTTTTTATGTAG 60.085 45.833 0.00 0.00 44.57 2.74
426 427 3.802139 CGATCAGCGAGGCTTTTTATGTA 59.198 43.478 0.00 0.00 44.57 2.29
440 441 3.118542 TGTGATTCAGAATCGATCAGCG 58.881 45.455 16.82 0.00 40.84 5.18
447 448 3.482598 GCAGACGTTGTGATTCAGAATCG 60.483 47.826 16.82 8.74 40.84 3.34
460 461 1.330779 CGACGACAGAGCAGACGTTG 61.331 60.000 0.00 0.00 39.74 4.10
461 462 1.082038 CGACGACAGAGCAGACGTT 60.082 57.895 0.00 0.00 39.74 3.99
510 511 2.247437 CCTAGCGAGAAATGCGGGC 61.247 63.158 0.00 0.00 37.44 6.13
554 555 8.437575 TCCCTTTCAGACAAGTACTAGATTTTT 58.562 33.333 0.00 0.00 0.00 1.94
555 556 7.974504 TCCCTTTCAGACAAGTACTAGATTTT 58.025 34.615 0.00 0.00 0.00 1.82
556 557 7.554959 TCCCTTTCAGACAAGTACTAGATTT 57.445 36.000 0.00 0.00 0.00 2.17
557 558 7.235812 ACTTCCCTTTCAGACAAGTACTAGATT 59.764 37.037 0.00 0.00 0.00 2.40
558 559 6.726764 ACTTCCCTTTCAGACAAGTACTAGAT 59.273 38.462 0.00 0.00 0.00 1.98
559 560 6.075984 ACTTCCCTTTCAGACAAGTACTAGA 58.924 40.000 0.00 0.00 0.00 2.43
560 561 6.015350 TGACTTCCCTTTCAGACAAGTACTAG 60.015 42.308 0.00 0.00 0.00 2.57
561 562 5.836898 TGACTTCCCTTTCAGACAAGTACTA 59.163 40.000 0.00 0.00 0.00 1.82
570 580 0.034896 GCCGTGACTTCCCTTTCAGA 59.965 55.000 0.00 0.00 0.00 3.27
576 586 1.674057 CTTGAGCCGTGACTTCCCT 59.326 57.895 0.00 0.00 0.00 4.20
579 589 1.016653 GGAGCTTGAGCCGTGACTTC 61.017 60.000 0.00 0.00 43.38 3.01
606 616 3.541950 CTGGGCGATGATGGGCGAT 62.542 63.158 0.00 0.00 0.00 4.58
622 636 2.908073 GCAAAGCCACCGGACACTG 61.908 63.158 9.46 0.00 0.00 3.66
623 637 2.594592 GCAAAGCCACCGGACACT 60.595 61.111 9.46 0.00 0.00 3.55
710 724 2.550978 CCCGCATTTCCTAGTACACTG 58.449 52.381 0.00 0.00 0.00 3.66
721 740 0.539986 TCCTAGTCACCCCGCATTTC 59.460 55.000 0.00 0.00 0.00 2.17
735 754 1.517832 CAAGTGGGACGGCTCCTAG 59.482 63.158 0.00 0.00 36.68 3.02
736 755 2.656069 GCAAGTGGGACGGCTCCTA 61.656 63.158 0.00 0.00 36.68 2.94
737 756 4.021925 GCAAGTGGGACGGCTCCT 62.022 66.667 0.00 0.00 36.68 3.69
766 792 2.556287 GTTTGAAGCGCCGGTGAG 59.444 61.111 21.76 4.02 0.00 3.51
770 796 0.723459 GTTTACGTTTGAAGCGCCGG 60.723 55.000 2.29 0.00 0.00 6.13
853 892 3.295273 AGTGACCAGTGCGCGAGA 61.295 61.111 12.10 0.00 0.00 4.04
865 923 2.125753 CGCTCCAGAGGCAGTGAC 60.126 66.667 0.00 0.00 0.00 3.67
898 973 8.812147 TGCTTCGTTTGGTTGACTATATATAG 57.188 34.615 16.73 16.73 36.46 1.31
936 1011 3.565902 GGATATCCTTCCTTCCTTTTGCG 59.434 47.826 14.97 0.00 32.68 4.85
941 1019 2.713708 GCTGGGATATCCTTCCTTCCTT 59.286 50.000 21.18 0.00 35.97 3.36
949 1027 4.168675 TCTTTCAATGGCTGGGATATCCTT 59.831 41.667 21.18 3.82 36.20 3.36
950 1028 3.723681 TCTTTCAATGGCTGGGATATCCT 59.276 43.478 21.18 0.00 36.20 3.24
951 1029 4.104383 TCTTTCAATGGCTGGGATATCC 57.896 45.455 13.87 13.87 0.00 2.59
952 1030 5.508657 GCTTTCTTTCAATGGCTGGGATATC 60.509 44.000 0.00 0.00 0.00 1.63
953 1031 4.343239 GCTTTCTTTCAATGGCTGGGATAT 59.657 41.667 0.00 0.00 0.00 1.63
954 1032 3.701040 GCTTTCTTTCAATGGCTGGGATA 59.299 43.478 0.00 0.00 0.00 2.59
955 1033 2.498885 GCTTTCTTTCAATGGCTGGGAT 59.501 45.455 0.00 0.00 0.00 3.85
956 1034 1.895131 GCTTTCTTTCAATGGCTGGGA 59.105 47.619 0.00 0.00 0.00 4.37
957 1035 1.897802 AGCTTTCTTTCAATGGCTGGG 59.102 47.619 0.00 0.00 0.00 4.45
958 1036 2.559668 TGAGCTTTCTTTCAATGGCTGG 59.440 45.455 0.00 0.00 0.00 4.85
959 1037 3.928727 TGAGCTTTCTTTCAATGGCTG 57.071 42.857 0.00 0.00 0.00 4.85
960 1038 4.147321 TCTTGAGCTTTCTTTCAATGGCT 58.853 39.130 0.00 0.00 33.25 4.75
964 1042 6.548993 ACTTCCTTCTTGAGCTTTCTTTCAAT 59.451 34.615 0.00 0.00 33.25 2.57
1047 1127 2.203972 CTACGAAACCCGACGCTCCA 62.204 60.000 0.00 0.00 41.76 3.86
1071 1151 1.086634 GGAGCTTCATGACGAGCCAC 61.087 60.000 14.44 9.73 0.00 5.01
1141 1221 1.150536 CGAGAGAGAGAGGGAGGGG 59.849 68.421 0.00 0.00 0.00 4.79
1148 1228 2.198406 CTACCACGTCGAGAGAGAGAG 58.802 57.143 0.00 0.00 43.49 3.20
1200 1308 4.576873 TCAACGTTGGCTGAGATAAAAACA 59.423 37.500 27.02 0.00 0.00 2.83
1372 1480 8.665906 TGGATATTTATTTACCTCGGGATCTTT 58.334 33.333 0.00 0.00 0.00 2.52
1377 1485 5.280317 GCCTGGATATTTATTTACCTCGGGA 60.280 44.000 0.00 0.00 0.00 5.14
1391 1499 4.032960 TGTTTCAGTGTGCCTGGATATT 57.967 40.909 0.00 0.00 41.83 1.28
1396 1505 1.955778 TGATTGTTTCAGTGTGCCTGG 59.044 47.619 0.00 0.00 41.83 4.45
1398 1507 4.082571 GCTATTGATTGTTTCAGTGTGCCT 60.083 41.667 0.00 0.00 35.27 4.75
1401 1510 5.156355 GTGGCTATTGATTGTTTCAGTGTG 58.844 41.667 0.00 0.00 35.27 3.82
1402 1511 4.083324 CGTGGCTATTGATTGTTTCAGTGT 60.083 41.667 0.00 0.00 35.27 3.55
1411 1544 6.706270 AGTAGTATTTCCGTGGCTATTGATTG 59.294 38.462 0.00 0.00 0.00 2.67
1415 1548 4.211374 GCAGTAGTATTTCCGTGGCTATTG 59.789 45.833 0.00 0.00 0.00 1.90
1447 1580 7.551585 CATTCACCTCAGTTTCTGATACTACT 58.448 38.462 0.37 0.00 39.92 2.57
1448 1581 6.256757 GCATTCACCTCAGTTTCTGATACTAC 59.743 42.308 0.37 0.00 39.92 2.73
1449 1582 6.070824 TGCATTCACCTCAGTTTCTGATACTA 60.071 38.462 0.37 0.00 39.92 1.82
1457 1590 3.364366 CGTTCTGCATTCACCTCAGTTTC 60.364 47.826 0.00 0.00 0.00 2.78
1460 1593 1.344438 TCGTTCTGCATTCACCTCAGT 59.656 47.619 0.00 0.00 0.00 3.41
1490 1623 2.204090 ATCCCTTCCACCGTGGGT 60.204 61.111 17.76 0.00 41.58 4.51
1493 1626 1.746615 CAGCATCCCTTCCACCGTG 60.747 63.158 0.00 0.00 0.00 4.94
1680 1813 1.740043 GCAGAGAAGAGAAGGCTGCTC 60.740 57.143 15.15 15.15 46.17 4.26
1686 1823 3.631250 AGTAGAGGCAGAGAAGAGAAGG 58.369 50.000 0.00 0.00 0.00 3.46
1713 1851 6.851609 TGTTGCTTTGCCACAAGTAATATAG 58.148 36.000 0.00 0.00 31.36 1.31
1714 1852 6.825944 TGTTGCTTTGCCACAAGTAATATA 57.174 33.333 0.00 0.00 31.36 0.86
1715 1853 5.720371 TGTTGCTTTGCCACAAGTAATAT 57.280 34.783 0.00 0.00 31.36 1.28
1716 1854 5.521906 TTGTTGCTTTGCCACAAGTAATA 57.478 34.783 5.31 0.00 38.84 0.98
1717 1855 4.399004 TTGTTGCTTTGCCACAAGTAAT 57.601 36.364 5.31 0.00 38.84 1.89
1718 1856 3.876274 TTGTTGCTTTGCCACAAGTAA 57.124 38.095 5.31 0.00 38.84 2.24
1719 1857 5.521906 TTATTGTTGCTTTGCCACAAGTA 57.478 34.783 13.14 3.45 44.88 2.24
1720 1858 2.985957 ATTGTTGCTTTGCCACAAGT 57.014 40.000 13.14 2.21 44.88 3.16
1721 1859 4.989797 TCATTATTGTTGCTTTGCCACAAG 59.010 37.500 13.14 2.61 44.88 3.16
1722 1860 4.749099 GTCATTATTGTTGCTTTGCCACAA 59.251 37.500 10.72 10.72 45.53 3.33
1723 1861 4.202192 TGTCATTATTGTTGCTTTGCCACA 60.202 37.500 0.00 0.00 32.42 4.17
1724 1862 4.305769 TGTCATTATTGTTGCTTTGCCAC 58.694 39.130 0.00 0.00 0.00 5.01
1725 1863 4.597404 TGTCATTATTGTTGCTTTGCCA 57.403 36.364 0.00 0.00 0.00 4.92
1726 1864 4.201744 GCATGTCATTATTGTTGCTTTGCC 60.202 41.667 0.00 0.00 0.00 4.52
1727 1865 4.491280 CGCATGTCATTATTGTTGCTTTGC 60.491 41.667 0.00 0.00 0.00 3.68
1728 1866 4.031991 CCGCATGTCATTATTGTTGCTTTG 59.968 41.667 0.00 0.00 0.00 2.77
1729 1867 4.082300 TCCGCATGTCATTATTGTTGCTTT 60.082 37.500 0.00 0.00 0.00 3.51
1735 1873 4.454678 ACTCATCCGCATGTCATTATTGT 58.545 39.130 0.00 0.00 0.00 2.71
1743 1881 1.592669 CCCGACTCATCCGCATGTC 60.593 63.158 0.00 0.00 0.00 3.06
1749 1887 0.953471 TGCAAAACCCGACTCATCCG 60.953 55.000 0.00 0.00 0.00 4.18
1750 1888 0.804989 CTGCAAAACCCGACTCATCC 59.195 55.000 0.00 0.00 0.00 3.51
1793 1931 4.845580 ATGGCGGCCTTCTCTGCG 62.846 66.667 21.46 0.00 39.19 5.18
1865 2003 3.382832 CTGAGGAACGGGCCGACT 61.383 66.667 35.78 25.93 0.00 4.18
1916 2054 1.153086 ATTCCCTGTGATGAGCGCC 60.153 57.895 2.29 0.00 0.00 6.53
1928 2066 1.840635 GAGTAGTGGGCTTCATTCCCT 59.159 52.381 0.00 0.00 44.23 4.20
1934 2072 1.112113 GGATCGAGTAGTGGGCTTCA 58.888 55.000 0.00 0.00 0.00 3.02
1937 2075 0.259065 TCAGGATCGAGTAGTGGGCT 59.741 55.000 0.00 0.00 0.00 5.19
1973 2111 2.262915 CAGAGGTCGTCCAGGTGC 59.737 66.667 0.51 0.00 35.89 5.01
2414 2555 5.815233 AGTCCATGATATCCCACTAGTTG 57.185 43.478 0.00 0.00 0.00 3.16
2458 2599 2.430248 TCATACTACTGCCGAGGTGA 57.570 50.000 0.00 0.00 0.00 4.02
2540 2681 7.581213 AACTGTGACACTTTATTTTGGATCA 57.419 32.000 7.20 0.00 0.00 2.92
2572 2713 1.877443 TCGCAGTTTTGAACTAAGCCC 59.123 47.619 0.00 0.00 40.46 5.19
2576 2717 5.554822 AAAGTGTCGCAGTTTTGAACTAA 57.445 34.783 6.78 0.00 40.46 2.24
2577 2718 5.554822 AAAAGTGTCGCAGTTTTGAACTA 57.445 34.783 18.32 0.00 42.88 2.24
2578 2719 4.434713 AAAAGTGTCGCAGTTTTGAACT 57.565 36.364 18.32 0.00 42.88 3.01
2579 2720 5.329493 AGTAAAAGTGTCGCAGTTTTGAAC 58.671 37.500 23.65 18.02 43.83 3.18
2619 2796 7.895429 TCCTTTGTTCTCTATCCCATGAAAAAT 59.105 33.333 0.00 0.00 0.00 1.82
2777 2955 6.313658 GCAGTGGTGTTCATTCTTTTCTTTTT 59.686 34.615 0.00 0.00 0.00 1.94
2860 3038 4.096532 TCGAGACTAAATCATCGTGCTTCT 59.903 41.667 0.00 0.00 36.58 2.85
2935 3113 5.221087 CGCCAAACTAGTAAAAACCTGGAAA 60.221 40.000 0.00 0.00 0.00 3.13
2962 3140 7.862372 TGAAAACTACATGCAGACTTTTTCATC 59.138 33.333 14.43 0.00 36.85 2.92
3040 3218 6.357367 ACAAAAGTACATCTGTGAGAAGGTT 58.643 36.000 0.00 0.00 0.00 3.50
3285 3463 8.956426 GTGATACCAAATTTGAATTACTCTGGA 58.044 33.333 19.86 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.