Multiple sequence alignment - TraesCS3B01G257100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G257100 chr3B 100.000 3503 0 0 1 3503 414826741 414830243 0.000000e+00 6469.0
1 TraesCS3B01G257100 chr3B 93.846 390 15 3 2953 3335 219462102 219462489 2.340000e-161 579.0
2 TraesCS3B01G257100 chr3B 92.821 390 17 4 2953 3335 792630966 792630581 3.950000e-154 555.0
3 TraesCS3B01G257100 chr3B 87.692 65 8 0 2951 3015 735658280 735658344 3.750000e-10 76.8
4 TraesCS3B01G257100 chr3D 93.616 1958 63 10 1 1950 306264469 306262566 0.000000e+00 2867.0
5 TraesCS3B01G257100 chr3D 93.033 976 37 17 1952 2919 306262531 306261579 0.000000e+00 1397.0
6 TraesCS3B01G257100 chr3D 94.737 171 8 1 3334 3503 260971600 260971430 7.460000e-67 265.0
7 TraesCS3B01G257100 chr3A 91.176 1972 104 29 1 1950 425149515 425147592 0.000000e+00 2614.0
8 TraesCS3B01G257100 chr3A 91.142 1016 56 19 1955 2959 425147544 425146552 0.000000e+00 1347.0
9 TraesCS3B01G257100 chr3A 98.172 383 7 0 2953 3335 17715619 17715237 0.000000e+00 669.0
10 TraesCS3B01G257100 chr2B 99.275 552 3 1 2953 3503 136751005 136751556 0.000000e+00 996.0
11 TraesCS3B01G257100 chr2B 98.911 551 6 0 2953 3503 201383614 201384164 0.000000e+00 985.0
12 TraesCS3B01G257100 chr5B 99.093 551 5 0 2953 3503 273700512 273699962 0.000000e+00 990.0
13 TraesCS3B01G257100 chr6B 94.103 390 14 3 2953 3335 547000859 547000472 5.040000e-163 584.0
14 TraesCS3B01G257100 chr6B 95.906 171 6 1 3334 3503 481266119 481266289 3.440000e-70 276.0
15 TraesCS3B01G257100 chr1D 93.112 392 18 2 2953 3335 256249490 256249881 1.830000e-157 566.0
16 TraesCS3B01G257100 chr4D 92.621 393 20 3 2952 3335 490988365 490987973 1.100000e-154 556.0
17 TraesCS3B01G257100 chr4D 94.737 171 8 1 3334 3503 459257221 459257391 7.460000e-67 265.0
18 TraesCS3B01G257100 chr5A 91.624 394 25 2 2953 3339 169235725 169235333 3.980000e-149 538.0
19 TraesCS3B01G257100 chr7B 94.767 172 7 2 3334 3503 334800666 334800837 2.070000e-67 267.0
20 TraesCS3B01G257100 chr2D 94.737 171 8 1 3334 3503 503581912 503582082 7.460000e-67 265.0
21 TraesCS3B01G257100 chr2A 93.567 171 10 1 3334 3503 535832976 535833146 1.610000e-63 254.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G257100 chr3B 414826741 414830243 3502 False 6469.0 6469 100.0000 1 3503 1 chr3B.!!$F2 3502
1 TraesCS3B01G257100 chr3D 306261579 306264469 2890 True 2132.0 2867 93.3245 1 2919 2 chr3D.!!$R2 2918
2 TraesCS3B01G257100 chr3A 425146552 425149515 2963 True 1980.5 2614 91.1590 1 2959 2 chr3A.!!$R2 2958
3 TraesCS3B01G257100 chr2B 136751005 136751556 551 False 996.0 996 99.2750 2953 3503 1 chr2B.!!$F1 550
4 TraesCS3B01G257100 chr2B 201383614 201384164 550 False 985.0 985 98.9110 2953 3503 1 chr2B.!!$F2 550
5 TraesCS3B01G257100 chr5B 273699962 273700512 550 True 990.0 990 99.0930 2953 3503 1 chr5B.!!$R1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 1.199852 CGTCAAAACGGTGCAAGCAC 61.200 55.0 16.46 16.46 45.21 4.40 F
1328 1362 0.465460 TCCCTGCAGGAACACAACAC 60.465 55.0 34.91 0.00 43.78 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1959 2042 0.107081 TTTGCCAAAAGCTGCTGCAT 59.893 45.0 18.42 2.35 44.23 3.96 R
2833 2927 0.106419 AACACGGGTGGGTTGTGATT 60.106 50.0 0.00 0.00 37.08 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.199852 CGTCAAAACGGTGCAAGCAC 61.200 55.000 16.46 16.46 45.21 4.40
78 79 3.434940 ACCGCCTTAATCTTTTCCACT 57.565 42.857 0.00 0.00 0.00 4.00
249 252 3.131046 GTCAGGCTGGGTTATTGGAAATG 59.869 47.826 15.73 0.00 0.00 2.32
333 337 2.173356 TCATCATTAAGGTGGGCCTCTG 59.827 50.000 4.53 0.00 46.33 3.35
341 345 1.456287 GTGGGCCTCTGGACAAAGT 59.544 57.895 4.53 0.00 27.52 2.66
407 412 1.400494 GCAACCAATTACGTAGGCCAG 59.600 52.381 5.01 0.00 0.00 4.85
409 414 2.676342 CAACCAATTACGTAGGCCAGTC 59.324 50.000 5.01 0.00 0.00 3.51
426 431 3.681897 CCAGTCAGCCAAATATATCGCTC 59.318 47.826 0.23 0.00 0.00 5.03
428 433 4.993584 CAGTCAGCCAAATATATCGCTCTT 59.006 41.667 0.23 0.00 0.00 2.85
429 434 5.468072 CAGTCAGCCAAATATATCGCTCTTT 59.532 40.000 0.23 0.00 0.00 2.52
430 435 6.646653 CAGTCAGCCAAATATATCGCTCTTTA 59.353 38.462 0.23 0.00 0.00 1.85
473 478 4.536765 CAAATACCAGCCATTTCCTACCT 58.463 43.478 0.00 0.00 0.00 3.08
476 481 6.530601 AATACCAGCCATTTCCTACCTATT 57.469 37.500 0.00 0.00 0.00 1.73
480 485 5.066593 CCAGCCATTTCCTACCTATTCTTC 58.933 45.833 0.00 0.00 0.00 2.87
518 523 9.985730 TTAATATATTGGAACCTCGTACGAAAT 57.014 29.630 20.00 16.11 0.00 2.17
584 589 2.510238 GCGCACTCGAGGAATGCT 60.510 61.111 18.41 0.00 37.20 3.79
615 620 5.454062 TGAGGAATTCTTTCACCTCCAAAA 58.546 37.500 5.23 0.00 45.61 2.44
907 916 4.500452 AGGTCCTACTTTACACTTCCCTT 58.500 43.478 0.00 0.00 0.00 3.95
982 992 4.081198 ACCGAGCTCTTGATCTTGATTCTT 60.081 41.667 12.85 0.00 0.00 2.52
998 1008 2.704190 TCTTGAGGGAGGAAGACAGT 57.296 50.000 0.00 0.00 0.00 3.55
1160 1193 1.001487 TGCTGTCCGATGCTTGTTTTG 60.001 47.619 0.00 0.00 0.00 2.44
1287 1321 6.325919 ACATTTCGCAAATCTTTTCACCTA 57.674 33.333 0.00 0.00 0.00 3.08
1328 1362 0.465460 TCCCTGCAGGAACACAACAC 60.465 55.000 34.91 0.00 43.78 3.32
1348 1382 1.339610 CCGGAGAGTAGAAGCATCCAG 59.660 57.143 0.00 0.00 0.00 3.86
1364 1398 1.003355 CAGCCGACTCACCCAACAT 60.003 57.895 0.00 0.00 0.00 2.71
1367 1401 1.447838 CCGACTCACCCAACATCCG 60.448 63.158 0.00 0.00 0.00 4.18
1449 1483 2.421314 CATCCTACGCCATGCCGA 59.579 61.111 1.80 0.00 0.00 5.54
1450 1484 1.004560 CATCCTACGCCATGCCGAT 60.005 57.895 1.80 0.00 0.00 4.18
1841 1881 0.836606 ATACCATCCACGACCATGCA 59.163 50.000 0.00 0.00 0.00 3.96
1940 1980 1.342674 ACCACCGATCCCAGTAAGCTA 60.343 52.381 0.00 0.00 0.00 3.32
1950 1990 2.527100 CCAGTAAGCTAAACGTCTCCG 58.473 52.381 0.00 0.00 40.83 4.63
1966 2049 1.536766 CTCCGTCTTTGAAATGCAGCA 59.463 47.619 0.00 0.00 0.00 4.41
1968 2051 1.334054 CGTCTTTGAAATGCAGCAGC 58.666 50.000 0.00 0.00 42.57 5.25
1977 2060 0.107081 AATGCAGCAGCTTTTGGCAA 59.893 45.000 9.06 0.00 44.79 4.52
1988 2071 4.212636 CAGCTTTTGGCAAAATCTTTCCAG 59.787 41.667 24.30 11.99 44.79 3.86
2031 2116 3.899835 TCGTTCTCACGCGAATTTATG 57.100 42.857 15.93 0.00 46.70 1.90
2034 2119 3.541516 CGTTCTCACGCGAATTTATGTCC 60.542 47.826 15.93 0.00 40.18 4.02
2045 2132 1.544724 TTTATGTCCACCTTGCAGGC 58.455 50.000 2.50 0.00 39.63 4.85
2051 2138 2.752358 CACCTTGCAGGCTCAGGA 59.248 61.111 8.39 0.00 39.63 3.86
2084 2173 2.367567 TCCAGCGTCAAGGTAAAGTTCT 59.632 45.455 0.00 0.00 0.00 3.01
2087 2179 4.151867 CCAGCGTCAAGGTAAAGTTCTTAC 59.848 45.833 0.00 0.00 0.00 2.34
2089 2181 6.154445 CAGCGTCAAGGTAAAGTTCTTACTA 58.846 40.000 0.00 0.00 33.17 1.82
2090 2182 6.308282 CAGCGTCAAGGTAAAGTTCTTACTAG 59.692 42.308 0.00 0.00 33.17 2.57
2092 2184 6.865205 GCGTCAAGGTAAAGTTCTTACTAGAA 59.135 38.462 0.00 0.00 38.06 2.10
2094 2186 8.697960 CGTCAAGGTAAAGTTCTTACTAGAAAC 58.302 37.037 0.00 0.00 41.86 2.78
2100 2192 7.173907 GGTAAAGTTCTTACTAGAAACCCAACC 59.826 40.741 0.00 0.55 41.86 3.77
2101 2193 5.238624 AGTTCTTACTAGAAACCCAACCC 57.761 43.478 0.00 0.00 41.86 4.11
2102 2194 3.967332 TCTTACTAGAAACCCAACCCG 57.033 47.619 0.00 0.00 0.00 5.28
2105 2197 4.347583 TCTTACTAGAAACCCAACCCGAAA 59.652 41.667 0.00 0.00 0.00 3.46
2106 2198 2.854963 ACTAGAAACCCAACCCGAAAC 58.145 47.619 0.00 0.00 0.00 2.78
2115 2207 2.166664 CCCAACCCGAAACAAAAACTGA 59.833 45.455 0.00 0.00 0.00 3.41
2117 2209 4.246458 CCAACCCGAAACAAAAACTGAAA 58.754 39.130 0.00 0.00 0.00 2.69
2118 2210 4.873259 CCAACCCGAAACAAAAACTGAAAT 59.127 37.500 0.00 0.00 0.00 2.17
2119 2211 5.352846 CCAACCCGAAACAAAAACTGAAATT 59.647 36.000 0.00 0.00 0.00 1.82
2121 2213 5.725362 ACCCGAAACAAAAACTGAAATTGA 58.275 33.333 0.00 0.00 0.00 2.57
2122 2214 6.166982 ACCCGAAACAAAAACTGAAATTGAA 58.833 32.000 0.00 0.00 0.00 2.69
2123 2215 6.821160 ACCCGAAACAAAAACTGAAATTGAAT 59.179 30.769 0.00 0.00 0.00 2.57
2124 2216 7.982354 ACCCGAAACAAAAACTGAAATTGAATA 59.018 29.630 0.00 0.00 0.00 1.75
2126 2218 9.796062 CCGAAACAAAAACTGAAATTGAATATG 57.204 29.630 0.00 0.00 0.00 1.78
2165 2257 1.207089 TCTGTAACCGAGGCCTGAATG 59.793 52.381 12.00 0.00 0.00 2.67
2177 2269 2.485814 GGCCTGAATGTTCTCTTGTGAC 59.514 50.000 0.00 0.00 0.00 3.67
2178 2270 3.141398 GCCTGAATGTTCTCTTGTGACA 58.859 45.455 0.00 0.00 0.00 3.58
2179 2271 3.058639 GCCTGAATGTTCTCTTGTGACAC 60.059 47.826 0.00 0.00 0.00 3.67
2210 2302 2.436646 CGGCGCTCAAGGGAACAT 60.437 61.111 7.64 0.00 0.00 2.71
2211 2303 2.753966 CGGCGCTCAAGGGAACATG 61.754 63.158 7.64 0.00 0.00 3.21
2268 2360 3.822192 CCGATGACTCCGACGCCA 61.822 66.667 0.00 0.00 0.00 5.69
2339 2431 3.589988 GGACGCCTATGTATGGATCAAG 58.410 50.000 0.00 0.00 0.00 3.02
2349 2441 1.340399 ATGGATCAAGCTCGCCTCCA 61.340 55.000 9.02 9.02 40.12 3.86
2677 2771 3.865745 AGTATCTTCACAATTCCGAAGCG 59.134 43.478 8.05 0.00 38.80 4.68
2833 2927 4.304432 TATGGCCCGCTGACCATA 57.696 55.556 0.00 0.00 44.92 2.74
2926 3022 4.085822 CCAAACAACGACGCAAAATAACTG 60.086 41.667 0.00 0.00 0.00 3.16
2927 3023 2.646250 ACAACGACGCAAAATAACTGC 58.354 42.857 0.00 0.00 36.41 4.40
2934 3030 2.290323 ACGCAAAATAACTGCTCCCTCT 60.290 45.455 0.00 0.00 37.67 3.69
2941 3037 1.501582 AACTGCTCCCTCTATCCCAC 58.498 55.000 0.00 0.00 0.00 4.61
2949 3045 5.849475 TGCTCCCTCTATCCCACAATATAAA 59.151 40.000 0.00 0.00 0.00 1.40
3295 3391 8.498358 CACACAATCATGCGTAATAGACATAAT 58.502 33.333 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 3.071874 TGTTAGCCAATCCACTCCTTG 57.928 47.619 0.00 0.00 0.00 3.61
333 337 3.572604 ACAGTAGTAGCGACTTTGTCC 57.427 47.619 4.33 0.00 37.10 4.02
376 381 9.687210 CTACGTAATTGGTTGCAGTTATCTATA 57.313 33.333 0.00 0.00 0.00 1.31
377 382 7.656137 CCTACGTAATTGGTTGCAGTTATCTAT 59.344 37.037 0.00 0.00 0.00 1.98
378 383 6.982141 CCTACGTAATTGGTTGCAGTTATCTA 59.018 38.462 0.00 0.00 0.00 1.98
407 412 5.931441 AAAGAGCGATATATTTGGCTGAC 57.069 39.130 7.37 0.00 35.54 3.51
476 481 9.419297 CAATATATTAACCGGATTTCTCGAAGA 57.581 33.333 9.46 0.00 0.00 2.87
480 485 8.440833 GTTCCAATATATTAACCGGATTTCTCG 58.559 37.037 9.46 0.00 0.00 4.04
500 505 2.299582 TGGATTTCGTACGAGGTTCCAA 59.700 45.455 28.74 17.72 30.67 3.53
518 523 4.574828 GCTTTGCGGTTTTATATCTCTGGA 59.425 41.667 0.00 0.00 0.00 3.86
584 589 4.695455 GTGAAAGAATTCCTCATGTCGGAA 59.305 41.667 17.36 17.36 44.08 4.30
615 620 2.678190 GCAAAAGCTGGACGAGGAGTAT 60.678 50.000 0.00 0.00 0.00 2.12
645 650 1.228184 GGCGGAGGAGATCTACCGA 60.228 63.158 27.84 0.00 46.94 4.69
982 992 2.182827 CATGACTGTCTTCCTCCCTCA 58.817 52.381 9.51 0.00 0.00 3.86
998 1008 2.825532 GGCCTAAGAAAACAAGCCATGA 59.174 45.455 0.00 0.00 40.20 3.07
1006 1016 1.938016 GCTCGACGGCCTAAGAAAACA 60.938 52.381 0.00 0.00 0.00 2.83
1160 1193 2.980233 AGCACAGCCTTTCGCACC 60.980 61.111 0.00 0.00 41.38 5.01
1287 1321 6.459710 GGGATCAAAAGAAGAAGAAACGTGTT 60.460 38.462 0.00 0.00 0.00 3.32
1328 1362 1.339610 CTGGATGCTTCTACTCTCCGG 59.660 57.143 0.00 0.00 0.00 5.14
1348 1382 1.745489 GGATGTTGGGTGAGTCGGC 60.745 63.158 0.00 0.00 0.00 5.54
1364 1398 1.381327 GGTGGTCAGGATCCTCGGA 60.381 63.158 12.69 4.19 0.00 4.55
1367 1401 0.684805 AGACGGTGGTCAGGATCCTC 60.685 60.000 12.69 0.74 45.92 3.71
1841 1881 0.905357 AGCTGTTGAAGGCGTAGGAT 59.095 50.000 0.00 0.00 0.00 3.24
1950 1990 2.719426 AGCTGCTGCATTTCAAAGAC 57.281 45.000 18.42 0.00 42.74 3.01
1959 2042 0.107081 TTTGCCAAAAGCTGCTGCAT 59.893 45.000 18.42 2.35 44.23 3.96
1968 2051 4.212636 CAGCTGGAAAGATTTTGCCAAAAG 59.787 41.667 5.57 0.00 41.66 2.27
2045 2132 1.000283 GGATACTGGCACGATCCTGAG 60.000 57.143 13.40 0.00 36.89 3.35
2051 2138 1.068083 CGCTGGATACTGGCACGAT 59.932 57.895 0.00 0.00 36.17 3.73
2084 2173 4.141528 TGTTTCGGGTTGGGTTTCTAGTAA 60.142 41.667 0.00 0.00 0.00 2.24
2087 2179 2.853705 TGTTTCGGGTTGGGTTTCTAG 58.146 47.619 0.00 0.00 0.00 2.43
2089 2181 2.146920 TTGTTTCGGGTTGGGTTTCT 57.853 45.000 0.00 0.00 0.00 2.52
2090 2182 2.963548 TTTGTTTCGGGTTGGGTTTC 57.036 45.000 0.00 0.00 0.00 2.78
2092 2184 2.568062 AGTTTTTGTTTCGGGTTGGGTT 59.432 40.909 0.00 0.00 0.00 4.11
2094 2186 2.166664 TCAGTTTTTGTTTCGGGTTGGG 59.833 45.455 0.00 0.00 0.00 4.12
2100 2192 9.796062 CATATTCAATTTCAGTTTTTGTTTCGG 57.204 29.630 0.00 0.00 0.00 4.30
2124 2216 8.921353 ACAGATAAGTAGTCCGTAATAGACAT 57.079 34.615 0.00 0.00 36.68 3.06
2127 2219 9.277783 GGTTACAGATAAGTAGTCCGTAATAGA 57.722 37.037 0.00 0.00 0.00 1.98
2128 2220 8.226448 CGGTTACAGATAAGTAGTCCGTAATAG 58.774 40.741 0.00 0.00 37.90 1.73
2129 2221 7.931407 TCGGTTACAGATAAGTAGTCCGTAATA 59.069 37.037 14.35 0.69 40.57 0.98
2130 2222 6.767902 TCGGTTACAGATAAGTAGTCCGTAAT 59.232 38.462 14.35 0.00 40.57 1.89
2131 2223 6.112734 TCGGTTACAGATAAGTAGTCCGTAA 58.887 40.000 14.35 0.00 40.57 3.18
2132 2224 5.670485 TCGGTTACAGATAAGTAGTCCGTA 58.330 41.667 14.35 0.00 40.57 4.02
2133 2225 4.517285 TCGGTTACAGATAAGTAGTCCGT 58.483 43.478 14.35 0.00 40.57 4.69
2134 2226 4.024218 CCTCGGTTACAGATAAGTAGTCCG 60.024 50.000 0.00 0.00 40.81 4.79
2135 2227 4.261530 GCCTCGGTTACAGATAAGTAGTCC 60.262 50.000 0.00 0.00 0.00 3.85
2136 2228 4.261530 GGCCTCGGTTACAGATAAGTAGTC 60.262 50.000 0.00 0.00 0.00 2.59
2137 2229 3.635836 GGCCTCGGTTACAGATAAGTAGT 59.364 47.826 0.00 0.00 0.00 2.73
2138 2230 3.890147 AGGCCTCGGTTACAGATAAGTAG 59.110 47.826 0.00 0.00 0.00 2.57
2139 2231 3.635373 CAGGCCTCGGTTACAGATAAGTA 59.365 47.826 0.00 0.00 0.00 2.24
2140 2232 2.431057 CAGGCCTCGGTTACAGATAAGT 59.569 50.000 0.00 0.00 0.00 2.24
2141 2233 2.693591 TCAGGCCTCGGTTACAGATAAG 59.306 50.000 0.00 0.00 0.00 1.73
2142 2234 2.742348 TCAGGCCTCGGTTACAGATAA 58.258 47.619 0.00 0.00 0.00 1.75
2143 2235 2.447408 TCAGGCCTCGGTTACAGATA 57.553 50.000 0.00 0.00 0.00 1.98
2165 2257 3.607078 GCCATTTCGTGTCACAAGAGAAC 60.607 47.826 3.42 0.00 0.00 3.01
2177 2269 4.817063 CGCCGCTGCCATTTCGTG 62.817 66.667 0.00 0.00 0.00 4.35
2207 2299 3.824425 ATGGCGGGGGCATCATGT 61.824 61.111 0.00 0.00 45.69 3.21
2268 2360 1.211567 TCGGGGTGAATGGGGTCATT 61.212 55.000 0.00 0.00 45.45 2.57
2301 2393 4.143333 CCGGTGCTAGGGGTGTCG 62.143 72.222 0.00 0.00 0.00 4.35
2331 2423 1.964608 CTGGAGGCGAGCTTGATCCA 61.965 60.000 21.18 21.18 37.71 3.41
2339 2431 2.202676 CGAAGTCTGGAGGCGAGC 60.203 66.667 0.00 0.00 0.00 5.03
2528 2620 1.741706 CTTTGACTGCTGCATAGGGTG 59.258 52.381 1.31 0.00 0.00 4.61
2530 2622 2.408271 TCTTTGACTGCTGCATAGGG 57.592 50.000 1.31 0.00 0.00 3.53
2668 2762 2.358615 AGCATGCACGCTTCGGAA 60.359 55.556 21.98 0.00 39.99 4.30
2671 2765 1.297378 CATCAGCATGCACGCTTCG 60.297 57.895 21.98 0.00 41.38 3.79
2833 2927 0.106419 AACACGGGTGGGTTGTGATT 60.106 50.000 0.00 0.00 37.08 2.57
2893 2989 1.397692 TCGTTGTTTGGACGTTTGGTC 59.602 47.619 0.00 0.00 45.31 4.02
2909 3005 2.095919 GGAGCAGTTATTTTGCGTCGTT 60.096 45.455 0.00 0.00 45.98 3.85
2926 3022 6.374417 TTTATATTGTGGGATAGAGGGAGC 57.626 41.667 0.00 0.00 0.00 4.70
2927 3023 7.661847 GTGTTTTATATTGTGGGATAGAGGGAG 59.338 40.741 0.00 0.00 0.00 4.30
2941 3037 7.643764 CGGGCATTCAACTAGTGTTTTATATTG 59.356 37.037 0.00 0.00 33.52 1.90
2949 3045 2.151202 CACGGGCATTCAACTAGTGTT 58.849 47.619 0.00 0.00 36.75 3.32
3295 3391 8.568794 GCATGTAGTACAGATAGTAGACATTGA 58.431 37.037 9.25 0.00 37.92 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.