Multiple sequence alignment - TraesCS3B01G256800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G256800 chr3B 100.000 6003 0 0 1 6003 414181192 414187194 0.000000e+00 11086.0
1 TraesCS3B01G256800 chr3D 96.765 1700 44 6 2321 4011 306740068 306738371 0.000000e+00 2824.0
2 TraesCS3B01G256800 chr3D 94.030 1206 51 7 618 1822 306741441 306740256 0.000000e+00 1808.0
3 TraesCS3B01G256800 chr3D 97.885 1040 19 2 4107 5145 306738261 306737224 0.000000e+00 1796.0
4 TraesCS3B01G256800 chr3D 92.026 464 19 5 5556 6003 306733032 306732571 2.360000e-178 636.0
5 TraesCS3B01G256800 chr3D 86.139 404 38 7 1 401 79525486 79525098 2.590000e-113 420.0
6 TraesCS3B01G256800 chr3D 95.652 184 8 0 5139 5322 306733296 306733113 4.550000e-76 296.0
7 TraesCS3B01G256800 chr3D 95.035 141 5 2 445 584 306741937 306741798 2.820000e-53 220.0
8 TraesCS3B01G256800 chr3D 84.286 210 23 4 193 400 463694679 463694880 4.750000e-46 196.0
9 TraesCS3B01G256800 chr3D 91.525 118 8 2 5450 5567 503019900 503019785 1.730000e-35 161.0
10 TraesCS3B01G256800 chr3D 96.429 84 3 0 5368 5451 306733114 306733031 8.110000e-29 139.0
11 TraesCS3B01G256800 chr3D 97.619 42 1 0 4083 4124 306738319 306738278 8.350000e-09 73.1
12 TraesCS3B01G256800 chr3A 88.986 2179 180 32 3208 5354 425604672 425602522 0.000000e+00 2639.0
13 TraesCS3B01G256800 chr3A 92.119 1142 55 15 525 1646 425607632 425606506 0.000000e+00 1578.0
14 TraesCS3B01G256800 chr3A 88.616 1098 78 19 2124 3213 425605801 425604743 0.000000e+00 1291.0
15 TraesCS3B01G256800 chr3A 89.197 361 25 7 1649 1995 425606344 425605984 7.140000e-119 438.0
16 TraesCS3B01G256800 chr3A 96.000 75 2 1 5594 5668 425580997 425580924 2.940000e-23 121.0
17 TraesCS3B01G256800 chr4A 92.519 401 27 3 1 399 689212003 689211604 6.750000e-159 571.0
18 TraesCS3B01G256800 chr4A 80.000 95 12 7 2959 3051 562377880 562377791 5.020000e-06 63.9
19 TraesCS3B01G256800 chr2D 87.313 402 45 5 1 401 614874879 614875275 7.090000e-124 455.0
20 TraesCS3B01G256800 chr2D 88.024 334 39 1 73 405 614876907 614877240 1.570000e-105 394.0
21 TraesCS3B01G256800 chr2D 100.000 28 0 0 2959 2986 6183108 6183135 1.100000e-02 52.8
22 TraesCS3B01G256800 chr6D 87.345 403 34 4 1 401 158454855 158455242 4.270000e-121 446.0
23 TraesCS3B01G256800 chr6D 80.909 110 14 6 2954 3057 396535422 396535530 4.990000e-11 80.5
24 TraesCS3B01G256800 chr7D 84.146 328 35 4 1 326 90708295 90707983 9.780000e-78 302.0
25 TraesCS3B01G256800 chr7D 82.143 112 14 6 2951 3057 167222256 167222366 2.300000e-14 91.6
26 TraesCS3B01G256800 chr7A 94.444 108 6 0 5450 5557 226929543 226929650 3.720000e-37 167.0
27 TraesCS3B01G256800 chr5A 94.444 108 6 0 5450 5557 311371387 311371494 3.720000e-37 167.0
28 TraesCS3B01G256800 chr5A 91.525 118 8 2 5450 5567 213672062 213671947 1.730000e-35 161.0
29 TraesCS3B01G256800 chr5A 91.525 118 8 2 5450 5567 628377584 628377469 1.730000e-35 161.0
30 TraesCS3B01G256800 chr4B 94.444 108 6 0 5450 5557 635226672 635226779 3.720000e-37 167.0
31 TraesCS3B01G256800 chr4B 91.525 118 8 2 5450 5567 378530584 378530469 1.730000e-35 161.0
32 TraesCS3B01G256800 chr7B 93.519 108 7 0 5450 5557 32932566 32932673 1.730000e-35 161.0
33 TraesCS3B01G256800 chr6A 91.525 118 8 2 5450 5567 141048114 141047999 1.730000e-35 161.0
34 TraesCS3B01G256800 chr2A 79.439 107 14 6 2954 3055 15968221 15968118 1.080000e-07 69.4
35 TraesCS3B01G256800 chr1A 100.000 28 0 0 2959 2986 14583517 14583490 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G256800 chr3B 414181192 414187194 6002 False 11086.0000 11086 100.000000 1 6003 1 chr3B.!!$F1 6002
1 TraesCS3B01G256800 chr3D 306732571 306741937 9366 True 974.0125 2824 95.680125 445 6003 8 chr3D.!!$R3 5558
2 TraesCS3B01G256800 chr3A 425602522 425607632 5110 True 1486.5000 2639 89.729500 525 5354 4 chr3A.!!$R2 4829
3 TraesCS3B01G256800 chr2D 614874879 614877240 2361 False 424.5000 455 87.668500 1 405 2 chr2D.!!$F2 404

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 2382 0.524862 GGGAAGCTGTTCAGCACATG 59.475 55.0 23.69 0.0 33.76 3.21 F
1583 3878 0.032678 CAGTCGCACTCAGGTCAGTT 59.967 55.0 0.00 0.0 0.00 3.16 F
2019 4487 0.321475 GCTCTCTGCTGGCTTGAGTT 60.321 55.0 12.64 0.0 38.95 3.01 F
2024 4492 0.595095 CTGCTGGCTTGAGTTTGTCC 59.405 55.0 0.00 0.0 0.00 4.02 F
3879 6600 0.586802 GTTTGCGGGTGTTCAGACTC 59.413 55.0 0.00 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2006 4474 0.106769 TGGACAAACTCAAGCCAGCA 60.107 50.0 0.0 0.0 0.00 4.41 R
3430 6151 0.179129 CGTGCCAATGATGAAAGGGC 60.179 55.0 0.0 0.0 44.82 5.19 R
3794 6515 0.034198 TCCGGACAATTTCGCTGACA 59.966 50.0 0.0 0.0 0.00 3.58 R
3886 6607 0.442310 CACGTTGTTGGATGCCTACG 59.558 55.0 0.0 0.0 32.19 3.51 R
5814 12548 0.255318 ACGGAGAGGGACGTATCAGT 59.745 55.0 0.0 0.0 42.15 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 3.009115 CCATCCACCACGGGACCT 61.009 66.667 0.00 0.00 40.44 3.85
123 2080 2.915659 ACGGGACCTGAAGACGCA 60.916 61.111 7.51 0.00 0.00 5.24
125 2082 2.432628 GGGACCTGAAGACGCACG 60.433 66.667 0.00 0.00 0.00 5.34
130 2087 1.251527 ACCTGAAGACGCACGGATCT 61.252 55.000 0.00 0.00 0.00 2.75
140 2097 2.366837 ACGGATCTGGCCCATCCA 60.367 61.111 24.17 0.00 44.18 3.41
142 2099 2.745308 CGGATCTGGCCCATCCACA 61.745 63.158 24.17 0.00 40.72 4.17
145 2102 0.604780 GATCTGGCCCATCCACATCG 60.605 60.000 0.00 0.00 40.72 3.84
239 2196 2.203126 GCCCATCGAGCTTCCCAG 60.203 66.667 0.00 0.00 0.00 4.45
374 2332 2.572284 GTTGTCTCCCCCGAGTCG 59.428 66.667 5.29 5.29 37.40 4.18
410 2368 3.400054 GGGGTCAGGTCGGGGAAG 61.400 72.222 0.00 0.00 0.00 3.46
411 2369 4.097361 GGGTCAGGTCGGGGAAGC 62.097 72.222 0.00 0.00 0.00 3.86
412 2370 3.003763 GGTCAGGTCGGGGAAGCT 61.004 66.667 0.00 0.00 0.00 3.74
413 2371 2.266055 GTCAGGTCGGGGAAGCTG 59.734 66.667 0.00 0.00 44.29 4.24
414 2372 2.203788 TCAGGTCGGGGAAGCTGT 60.204 61.111 0.00 0.00 43.57 4.40
415 2373 1.841556 TCAGGTCGGGGAAGCTGTT 60.842 57.895 0.00 0.00 43.57 3.16
416 2374 1.376037 CAGGTCGGGGAAGCTGTTC 60.376 63.158 0.00 0.00 39.39 3.18
417 2375 1.841556 AGGTCGGGGAAGCTGTTCA 60.842 57.895 0.00 0.00 33.93 3.18
418 2376 1.376037 GGTCGGGGAAGCTGTTCAG 60.376 63.158 0.00 0.00 33.93 3.02
419 2377 2.035442 GTCGGGGAAGCTGTTCAGC 61.035 63.158 15.88 15.88 33.93 4.26
420 2378 2.032528 CGGGGAAGCTGTTCAGCA 59.967 61.111 23.69 0.00 37.25 4.41
421 2379 2.328099 CGGGGAAGCTGTTCAGCAC 61.328 63.158 23.69 16.89 37.25 4.40
422 2380 1.228245 GGGGAAGCTGTTCAGCACA 60.228 57.895 23.69 0.00 37.25 4.57
423 2381 0.610232 GGGGAAGCTGTTCAGCACAT 60.610 55.000 23.69 11.41 33.76 3.21
424 2382 0.524862 GGGAAGCTGTTCAGCACATG 59.475 55.000 23.69 0.00 33.76 3.21
425 2383 1.527034 GGAAGCTGTTCAGCACATGA 58.473 50.000 23.69 0.00 33.76 3.07
426 2384 1.881973 GGAAGCTGTTCAGCACATGAA 59.118 47.619 23.69 0.00 45.79 2.57
436 2394 5.771153 TTCAGCACATGAATGAAACTGAA 57.229 34.783 16.21 16.21 43.09 3.02
437 2395 5.112220 TCAGCACATGAATGAAACTGAAC 57.888 39.130 0.00 0.00 34.02 3.18
438 2396 4.823442 TCAGCACATGAATGAAACTGAACT 59.177 37.500 0.00 0.00 34.02 3.01
439 2397 5.300034 TCAGCACATGAATGAAACTGAACTT 59.700 36.000 0.00 0.00 34.02 2.66
440 2398 5.628193 CAGCACATGAATGAAACTGAACTTC 59.372 40.000 0.00 0.00 0.00 3.01
441 2399 4.614284 GCACATGAATGAAACTGAACTTCG 59.386 41.667 0.00 0.00 0.00 3.79
442 2400 5.751680 CACATGAATGAAACTGAACTTCGT 58.248 37.500 0.00 0.00 0.00 3.85
443 2401 5.848036 CACATGAATGAAACTGAACTTCGTC 59.152 40.000 0.00 0.00 0.00 4.20
585 2854 3.254411 GGAAGGAGAAACCAAAGCTGAAG 59.746 47.826 0.00 0.00 42.04 3.02
601 2870 4.639310 AGCTGAAGCATATTTCCAAGACAG 59.361 41.667 4.90 0.00 45.16 3.51
740 3031 1.480137 CTCACTTGGCTACCTCCTGAG 59.520 57.143 0.00 0.00 0.00 3.35
954 3249 3.775654 CTCCGGCCCTCACCTCAC 61.776 72.222 0.00 0.00 0.00 3.51
982 3277 4.501915 CCTCGCTCCCGTATAAAATACCAA 60.502 45.833 0.00 0.00 35.54 3.67
1127 3422 4.521062 CTTCCTCCTCCGCTGCCG 62.521 72.222 0.00 0.00 0.00 5.69
1438 3733 4.504916 CCGGAGCTCCTCACGCTG 62.505 72.222 29.73 12.56 37.96 5.18
1543 3838 1.064296 CGCCAGGCTACTCTACGTG 59.936 63.158 10.54 0.00 0.00 4.49
1549 3844 0.248289 GGCTACTCTACGTGGGCAAA 59.752 55.000 0.00 0.00 46.85 3.68
1555 3850 1.964373 CTACGTGGGCAAAACGGCT 60.964 57.895 0.00 0.00 45.20 5.52
1583 3878 0.032678 CAGTCGCACTCAGGTCAGTT 59.967 55.000 0.00 0.00 0.00 3.16
1585 3880 2.094494 CAGTCGCACTCAGGTCAGTTAT 60.094 50.000 0.00 0.00 0.00 1.89
1589 3884 3.762288 TCGCACTCAGGTCAGTTATAAGT 59.238 43.478 0.00 0.00 0.00 2.24
1590 3885 4.945543 TCGCACTCAGGTCAGTTATAAGTA 59.054 41.667 0.00 0.00 0.00 2.24
1591 3886 5.593095 TCGCACTCAGGTCAGTTATAAGTAT 59.407 40.000 0.00 0.00 0.00 2.12
1592 3887 5.687730 CGCACTCAGGTCAGTTATAAGTATG 59.312 44.000 0.00 0.00 0.00 2.39
1593 3888 5.986135 GCACTCAGGTCAGTTATAAGTATGG 59.014 44.000 0.00 0.00 0.00 2.74
1594 3889 6.407074 GCACTCAGGTCAGTTATAAGTATGGT 60.407 42.308 0.00 0.00 0.00 3.55
1600 3895 9.645059 CAGGTCAGTTATAAGTATGGTATCATG 57.355 37.037 0.00 0.00 34.96 3.07
1601 3896 9.381038 AGGTCAGTTATAAGTATGGTATCATGT 57.619 33.333 0.00 0.00 34.96 3.21
1608 3903 9.811995 TTATAAGTATGGTATCATGTATTCGGC 57.188 33.333 0.00 0.00 34.96 5.54
1613 3908 2.407361 GGTATCATGTATTCGGCGTTCG 59.593 50.000 6.85 0.00 40.90 3.95
1614 3909 2.218953 ATCATGTATTCGGCGTTCGT 57.781 45.000 6.85 0.00 40.32 3.85
1615 3910 1.273688 TCATGTATTCGGCGTTCGTG 58.726 50.000 6.85 7.85 40.32 4.35
1625 3920 3.062763 TCGGCGTTCGTGGTATTTAAAA 58.937 40.909 6.85 0.00 40.32 1.52
1646 3941 5.649782 AATCAGGTGCTTTGAGGTTTATG 57.350 39.130 0.00 0.00 0.00 1.90
1648 3943 3.820467 TCAGGTGCTTTGAGGTTTATGTG 59.180 43.478 0.00 0.00 0.00 3.21
1656 4110 5.629435 GCTTTGAGGTTTATGTGTAGTTTGC 59.371 40.000 0.00 0.00 0.00 3.68
1673 4127 6.468333 AGTTTGCAATGCCAATGATATGTA 57.532 33.333 1.53 0.00 0.00 2.29
1798 4252 1.887198 CGGCGATCCTCTGGTAATACT 59.113 52.381 0.00 0.00 0.00 2.12
1801 4255 3.057174 GGCGATCCTCTGGTAATACTCAG 60.057 52.174 0.00 3.51 0.00 3.35
1857 4317 3.438297 ACCGGTCGATGATTCTTGTAG 57.562 47.619 0.00 0.00 0.00 2.74
1858 4318 2.758979 ACCGGTCGATGATTCTTGTAGT 59.241 45.455 0.00 0.00 0.00 2.73
1859 4319 3.949754 ACCGGTCGATGATTCTTGTAGTA 59.050 43.478 0.00 0.00 0.00 1.82
1860 4320 4.036498 ACCGGTCGATGATTCTTGTAGTAG 59.964 45.833 0.00 0.00 0.00 2.57
1861 4321 4.036498 CCGGTCGATGATTCTTGTAGTAGT 59.964 45.833 0.00 0.00 0.00 2.73
1863 4323 5.681982 CGGTCGATGATTCTTGTAGTAGTTC 59.318 44.000 0.00 0.00 0.00 3.01
1864 4324 5.978322 GGTCGATGATTCTTGTAGTAGTTCC 59.022 44.000 0.00 0.00 0.00 3.62
1865 4325 6.405508 GGTCGATGATTCTTGTAGTAGTTCCA 60.406 42.308 0.00 0.00 0.00 3.53
1867 4327 6.377429 TCGATGATTCTTGTAGTAGTTCCACT 59.623 38.462 0.00 0.00 0.00 4.00
1868 4328 7.036220 CGATGATTCTTGTAGTAGTTCCACTT 58.964 38.462 0.00 0.00 0.00 3.16
1869 4329 7.009631 CGATGATTCTTGTAGTAGTTCCACTTG 59.990 40.741 0.00 0.00 0.00 3.16
1877 4344 5.479375 TGTAGTAGTTCCACTTGGTAGAAGG 59.521 44.000 0.00 0.00 36.34 3.46
1880 4347 2.907042 AGTTCCACTTGGTAGAAGGGAG 59.093 50.000 0.00 0.00 36.34 4.30
1896 4363 2.852449 AGGGAGGCCAATTTCTGTATGA 59.148 45.455 5.01 0.00 0.00 2.15
1899 4366 4.141482 GGGAGGCCAATTTCTGTATGACTA 60.141 45.833 5.01 0.00 0.00 2.59
1907 4374 7.859377 GCCAATTTCTGTATGACTATTCACATG 59.141 37.037 0.00 0.00 33.38 3.21
1928 4395 7.555554 CACATGAAGTCCTTGATCCTAGAAAAT 59.444 37.037 0.00 0.00 0.00 1.82
1929 4396 7.555554 ACATGAAGTCCTTGATCCTAGAAAATG 59.444 37.037 0.00 0.00 0.00 2.32
1935 4403 5.488919 TCCTTGATCCTAGAAAATGGACAGT 59.511 40.000 0.00 0.00 34.90 3.55
1946 4414 5.302823 AGAAAATGGACAGTTTGGAGGAAAG 59.697 40.000 2.21 0.00 0.00 2.62
1952 4420 1.268899 CAGTTTGGAGGAAAGCAGCTG 59.731 52.381 10.11 10.11 0.00 4.24
1954 4422 1.538950 GTTTGGAGGAAAGCAGCTGAG 59.461 52.381 20.43 0.00 0.00 3.35
1958 4426 0.612744 GAGGAAAGCAGCTGAGTCCT 59.387 55.000 25.10 25.10 41.49 3.85
1997 4465 4.201647 GCATGTGCATCAATGTTAAACAGC 60.202 41.667 0.00 0.00 41.59 4.40
1998 4466 4.581077 TGTGCATCAATGTTAAACAGCA 57.419 36.364 0.00 0.00 0.00 4.41
1999 4467 4.941657 TGTGCATCAATGTTAAACAGCAA 58.058 34.783 0.00 0.00 28.39 3.91
2001 4469 3.989167 TGCATCAATGTTAAACAGCAAGC 59.011 39.130 0.00 0.00 0.00 4.01
2002 4470 4.240096 GCATCAATGTTAAACAGCAAGCT 58.760 39.130 0.00 0.00 0.00 3.74
2003 4471 4.325472 GCATCAATGTTAAACAGCAAGCTC 59.675 41.667 0.00 0.00 0.00 4.09
2004 4472 5.706916 CATCAATGTTAAACAGCAAGCTCT 58.293 37.500 0.00 0.00 0.00 4.09
2005 4473 5.362556 TCAATGTTAAACAGCAAGCTCTC 57.637 39.130 0.00 0.00 0.00 3.20
2006 4474 5.065914 TCAATGTTAAACAGCAAGCTCTCT 58.934 37.500 0.00 0.00 0.00 3.10
2007 4475 5.049198 TCAATGTTAAACAGCAAGCTCTCTG 60.049 40.000 12.13 12.13 36.45 3.35
2008 4476 2.549754 TGTTAAACAGCAAGCTCTCTGC 59.450 45.455 13.28 7.80 43.29 4.26
2017 4485 4.205287 GCTCTCTGCTGGCTTGAG 57.795 61.111 8.82 8.82 38.95 3.02
2018 4486 1.296068 GCTCTCTGCTGGCTTGAGT 59.704 57.895 12.64 0.00 38.95 3.41
2019 4487 0.321475 GCTCTCTGCTGGCTTGAGTT 60.321 55.000 12.64 0.00 38.95 3.01
2020 4488 1.881498 GCTCTCTGCTGGCTTGAGTTT 60.881 52.381 12.64 0.00 38.95 2.66
2021 4489 1.805345 CTCTCTGCTGGCTTGAGTTTG 59.195 52.381 12.64 5.14 0.00 2.93
2022 4490 1.141657 TCTCTGCTGGCTTGAGTTTGT 59.858 47.619 12.64 0.00 0.00 2.83
2023 4491 1.534595 CTCTGCTGGCTTGAGTTTGTC 59.465 52.381 0.00 0.00 0.00 3.18
2024 4492 0.595095 CTGCTGGCTTGAGTTTGTCC 59.405 55.000 0.00 0.00 0.00 4.02
2039 4507 6.072175 TGAGTTTGTCCAGCATTATAAACACC 60.072 38.462 0.00 0.00 32.17 4.16
2044 4512 5.189736 TGTCCAGCATTATAAACACCTCTCT 59.810 40.000 0.00 0.00 0.00 3.10
2045 4513 5.525378 GTCCAGCATTATAAACACCTCTCTG 59.475 44.000 0.00 0.00 0.00 3.35
2046 4514 5.189736 TCCAGCATTATAAACACCTCTCTGT 59.810 40.000 0.00 0.00 0.00 3.41
2057 4525 1.065854 ACCTCTCTGTGTGCAATAGCC 60.066 52.381 0.00 0.00 41.13 3.93
2061 4529 2.005451 CTCTGTGTGCAATAGCCACTC 58.995 52.381 6.04 0.00 40.41 3.51
2062 4530 1.625315 TCTGTGTGCAATAGCCACTCT 59.375 47.619 6.04 0.00 40.41 3.24
2102 4579 4.891168 TCCATGCAATGTTCTATGCTCATT 59.109 37.500 0.00 0.00 44.81 2.57
2103 4580 5.009310 TCCATGCAATGTTCTATGCTCATTC 59.991 40.000 0.00 0.00 44.81 2.67
2110 4587 9.525409 GCAATGTTCTATGCTCATTCTTAAAAT 57.475 29.630 0.00 0.00 39.46 1.82
2120 4597 8.048534 TGCTCATTCTTAAAATCTTTCAGAGG 57.951 34.615 0.00 0.00 0.00 3.69
2121 4598 7.667219 TGCTCATTCTTAAAATCTTTCAGAGGT 59.333 33.333 0.00 0.00 0.00 3.85
2195 4824 7.928307 TCAAGAAAAAGATCATCCTACCAAG 57.072 36.000 0.00 0.00 0.00 3.61
2196 4825 7.461749 TCAAGAAAAAGATCATCCTACCAAGT 58.538 34.615 0.00 0.00 0.00 3.16
2197 4826 8.602424 TCAAGAAAAAGATCATCCTACCAAGTA 58.398 33.333 0.00 0.00 0.00 2.24
2200 4829 6.636454 AAAAGATCATCCTACCAAGTACCA 57.364 37.500 0.00 0.00 0.00 3.25
2202 4831 5.615925 AGATCATCCTACCAAGTACCAAC 57.384 43.478 0.00 0.00 0.00 3.77
2203 4832 5.030147 AGATCATCCTACCAAGTACCAACA 58.970 41.667 0.00 0.00 0.00 3.33
2204 4833 4.819105 TCATCCTACCAAGTACCAACAG 57.181 45.455 0.00 0.00 0.00 3.16
2205 4834 3.055385 TCATCCTACCAAGTACCAACAGC 60.055 47.826 0.00 0.00 0.00 4.40
2206 4835 1.626825 TCCTACCAAGTACCAACAGCC 59.373 52.381 0.00 0.00 0.00 4.85
2207 4836 1.628846 CCTACCAAGTACCAACAGCCT 59.371 52.381 0.00 0.00 0.00 4.58
2208 4837 2.354805 CCTACCAAGTACCAACAGCCTC 60.355 54.545 0.00 0.00 0.00 4.70
2209 4838 1.435256 ACCAAGTACCAACAGCCTCT 58.565 50.000 0.00 0.00 0.00 3.69
2210 4839 2.616524 ACCAAGTACCAACAGCCTCTA 58.383 47.619 0.00 0.00 0.00 2.43
2211 4840 3.182152 ACCAAGTACCAACAGCCTCTAT 58.818 45.455 0.00 0.00 0.00 1.98
2212 4841 3.587506 ACCAAGTACCAACAGCCTCTATT 59.412 43.478 0.00 0.00 0.00 1.73
2213 4842 3.941483 CCAAGTACCAACAGCCTCTATTG 59.059 47.826 0.00 0.00 0.00 1.90
2224 4853 5.522641 ACAGCCTCTATTGAAAATCCCAAT 58.477 37.500 0.00 0.00 37.86 3.16
2228 4857 8.086522 CAGCCTCTATTGAAAATCCCAATATTG 58.913 37.037 8.58 8.58 36.33 1.90
2242 4871 5.689383 CCAATATTGGGATACTTGTTCCG 57.311 43.478 24.61 0.00 44.70 4.30
2248 4877 2.698797 TGGGATACTTGTTCCGATCTCC 59.301 50.000 0.00 0.00 33.82 3.71
2253 4882 2.541466 ACTTGTTCCGATCTCCCTCTT 58.459 47.619 0.00 0.00 0.00 2.85
2254 4883 2.907042 ACTTGTTCCGATCTCCCTCTTT 59.093 45.455 0.00 0.00 0.00 2.52
2280 4909 5.864628 TCGTCGAACATAGATATCCTCAG 57.135 43.478 0.00 0.00 0.00 3.35
2290 4919 4.461450 AGATATCCTCAGTACTCCAGCA 57.539 45.455 0.00 0.00 0.00 4.41
2298 4927 2.822561 TCAGTACTCCAGCAGAGAACTG 59.177 50.000 10.46 5.04 46.50 3.16
2306 4935 1.989165 CAGCAGAGAACTGACGTTAGC 59.011 52.381 7.34 0.00 46.03 3.09
2309 4938 2.921069 GCAGAGAACTGACGTTAGCGAA 60.921 50.000 7.34 0.00 46.03 4.70
2606 5235 2.162681 ACCAGGTAAAGTCAGCATTGC 58.837 47.619 0.00 0.00 0.00 3.56
2690 5320 4.379652 TGCTTTTCTTTGAAATGGCTTCC 58.620 39.130 14.36 0.00 32.53 3.46
2731 5361 7.093902 ACAGCTGATCAGTTGATTTTCATCATT 60.094 33.333 36.88 14.06 41.41 2.57
2751 5381 5.525012 TCATTTGCATCTACTTCTCGAATGG 59.475 40.000 0.00 0.00 32.28 3.16
2761 5391 5.674933 ACTTCTCGAATGGAACTTGAAAC 57.325 39.130 0.00 0.00 0.00 2.78
2893 5523 5.323371 TGGAAATGCTTTGCACTAATACC 57.677 39.130 0.00 0.00 43.04 2.73
2952 5582 7.144000 AGCTGAATAGAAGCAAGAAAAAGTTG 58.856 34.615 0.00 0.00 43.37 3.16
2965 5596 7.148705 GCAAGAAAAAGTTGTTTTTAACGAGGT 60.149 33.333 0.00 0.00 44.30 3.85
3038 5670 9.526713 GGTTAATTACGGAAAAACAGGTTAAAA 57.473 29.630 10.21 0.00 0.00 1.52
3126 5758 3.133691 CAGATACACTGCACACACTGTT 58.866 45.455 0.00 0.00 39.86 3.16
3175 5812 3.324556 TGTGTCATTGTCATCACTCCTCA 59.675 43.478 0.00 0.00 0.00 3.86
3180 5817 4.774200 TCATTGTCATCACTCCTCAGAGAA 59.226 41.667 0.00 0.00 43.39 2.87
3277 5991 1.610522 CAGTTTTGTGCCAAGGAGGAG 59.389 52.381 0.00 0.00 41.22 3.69
3346 6067 4.885325 TGATACCGACACAGCTATGTCTTA 59.115 41.667 22.08 13.44 45.73 2.10
3430 6151 1.926511 GCAACCCCGACATTGCTCAG 61.927 60.000 9.39 0.00 46.21 3.35
3579 6300 1.471676 CCAACCACACGGATCTAGAGC 60.472 57.143 0.00 0.00 35.59 4.09
3580 6301 0.824759 AACCACACGGATCTAGAGCC 59.175 55.000 17.43 17.43 35.59 4.70
3600 6321 1.762460 CCCCCTGGAGCTACGTCAT 60.762 63.158 0.00 0.00 0.00 3.06
3645 6366 5.684704 TCGATGGAGCCTTCAAGAATTAAT 58.315 37.500 3.70 0.00 0.00 1.40
3681 6402 1.228552 ATTGTTGTGGGCTTCGGCT 60.229 52.632 0.00 0.00 41.44 5.52
3851 6572 0.818296 CCACAAACCGGAACCAAACA 59.182 50.000 9.46 0.00 0.00 2.83
3879 6600 0.586802 GTTTGCGGGTGTTCAGACTC 59.413 55.000 0.00 0.00 0.00 3.36
3886 6607 1.668151 GTGTTCAGACTCCCGCCAC 60.668 63.158 0.00 0.00 0.00 5.01
4059 6812 0.238553 GCGAACAAGAAGCCAACTCC 59.761 55.000 0.00 0.00 0.00 3.85
4060 6813 1.593196 CGAACAAGAAGCCAACTCCA 58.407 50.000 0.00 0.00 0.00 3.86
4061 6814 1.946768 CGAACAAGAAGCCAACTCCAA 59.053 47.619 0.00 0.00 0.00 3.53
4063 6816 1.322442 ACAAGAAGCCAACTCCAAGC 58.678 50.000 0.00 0.00 0.00 4.01
4064 6817 1.321474 CAAGAAGCCAACTCCAAGCA 58.679 50.000 0.00 0.00 0.00 3.91
4145 6932 4.073549 TGGTAATACTTTTTCGTGGGTGG 58.926 43.478 0.00 0.00 0.00 4.61
4170 6957 4.453892 GCCCTGCCCTGCCTTCAT 62.454 66.667 0.00 0.00 0.00 2.57
4590 7378 4.023365 GCCCTAGCTTTTAGATGCTGAATG 60.023 45.833 0.00 0.00 40.08 2.67
4654 7442 2.683933 AGGTCCACTCGGCGGATT 60.684 61.111 7.21 0.00 34.32 3.01
4796 7584 6.614694 TTCTCCTGTATAAAGTACAAGGCA 57.385 37.500 0.00 0.00 0.00 4.75
4914 7703 4.866508 ACGTAGTGAATCTGGACAAGAA 57.133 40.909 0.00 0.00 42.51 2.52
4931 7720 0.383949 GAAAGCAAACACGGGAAGCA 59.616 50.000 0.00 0.00 0.00 3.91
4932 7721 1.000274 GAAAGCAAACACGGGAAGCAT 60.000 47.619 0.00 0.00 0.00 3.79
5055 7844 2.847901 CTGAACTGCAGCAAATCTTCG 58.152 47.619 15.27 2.32 37.90 3.79
5175 11908 2.362077 ACTCTTGAAACATGTTGGCCAC 59.638 45.455 12.82 0.75 0.00 5.01
5231 11964 3.980775 CGAATTTTGAACAAGTTCCGCAT 59.019 39.130 10.19 0.00 38.77 4.73
5313 12046 5.682943 GACTCATAGACTAGTCTTGCGAT 57.317 43.478 29.57 14.69 40.93 4.58
5358 12091 4.896562 TGTTGAAACTAACACTATCGCG 57.103 40.909 0.00 0.00 35.75 5.87
5359 12092 4.300803 TGTTGAAACTAACACTATCGCGT 58.699 39.130 5.77 0.00 35.75 6.01
5360 12093 4.746115 TGTTGAAACTAACACTATCGCGTT 59.254 37.500 5.77 0.00 35.75 4.84
5361 12094 4.896562 TGAAACTAACACTATCGCGTTG 57.103 40.909 5.77 1.93 0.00 4.10
5362 12095 4.300803 TGAAACTAACACTATCGCGTTGT 58.699 39.130 5.77 2.62 0.00 3.32
5363 12096 4.746115 TGAAACTAACACTATCGCGTTGTT 59.254 37.500 5.77 13.72 0.00 2.83
5364 12097 5.234757 TGAAACTAACACTATCGCGTTGTTT 59.765 36.000 18.13 11.44 33.32 2.83
5365 12098 5.662211 AACTAACACTATCGCGTTGTTTT 57.338 34.783 18.13 12.00 0.00 2.43
5366 12099 5.662211 ACTAACACTATCGCGTTGTTTTT 57.338 34.783 18.13 9.23 0.00 1.94
5451 12184 9.495754 CTCTAGCTTGTGATTTATTTTTGCTAC 57.504 33.333 0.00 0.00 0.00 3.58
5452 12185 9.231297 TCTAGCTTGTGATTTATTTTTGCTACT 57.769 29.630 0.00 0.00 0.00 2.57
5453 12186 9.495754 CTAGCTTGTGATTTATTTTTGCTACTC 57.504 33.333 0.00 0.00 0.00 2.59
5454 12187 7.315890 AGCTTGTGATTTATTTTTGCTACTCC 58.684 34.615 0.00 0.00 0.00 3.85
5455 12188 6.531594 GCTTGTGATTTATTTTTGCTACTCCC 59.468 38.462 0.00 0.00 0.00 4.30
5456 12189 7.577616 GCTTGTGATTTATTTTTGCTACTCCCT 60.578 37.037 0.00 0.00 0.00 4.20
5457 12190 7.391148 TGTGATTTATTTTTGCTACTCCCTC 57.609 36.000 0.00 0.00 0.00 4.30
5458 12191 6.377146 TGTGATTTATTTTTGCTACTCCCTCC 59.623 38.462 0.00 0.00 0.00 4.30
5459 12192 6.377146 GTGATTTATTTTTGCTACTCCCTCCA 59.623 38.462 0.00 0.00 0.00 3.86
5460 12193 7.068716 GTGATTTATTTTTGCTACTCCCTCCAT 59.931 37.037 0.00 0.00 0.00 3.41
5461 12194 7.619302 TGATTTATTTTTGCTACTCCCTCCATT 59.381 33.333 0.00 0.00 0.00 3.16
5462 12195 7.404671 TTTATTTTTGCTACTCCCTCCATTC 57.595 36.000 0.00 0.00 0.00 2.67
5463 12196 4.380843 TTTTTGCTACTCCCTCCATTCA 57.619 40.909 0.00 0.00 0.00 2.57
5464 12197 3.350219 TTTGCTACTCCCTCCATTCAC 57.650 47.619 0.00 0.00 0.00 3.18
5465 12198 2.254152 TGCTACTCCCTCCATTCACT 57.746 50.000 0.00 0.00 0.00 3.41
5466 12199 2.551270 TGCTACTCCCTCCATTCACTT 58.449 47.619 0.00 0.00 0.00 3.16
5467 12200 2.912956 TGCTACTCCCTCCATTCACTTT 59.087 45.455 0.00 0.00 0.00 2.66
5468 12201 3.330701 TGCTACTCCCTCCATTCACTTTT 59.669 43.478 0.00 0.00 0.00 2.27
5469 12202 3.691609 GCTACTCCCTCCATTCACTTTTG 59.308 47.826 0.00 0.00 0.00 2.44
5470 12203 3.884037 ACTCCCTCCATTCACTTTTGT 57.116 42.857 0.00 0.00 0.00 2.83
5471 12204 4.993705 ACTCCCTCCATTCACTTTTGTA 57.006 40.909 0.00 0.00 0.00 2.41
5472 12205 5.319043 ACTCCCTCCATTCACTTTTGTAA 57.681 39.130 0.00 0.00 0.00 2.41
5473 12206 5.701224 ACTCCCTCCATTCACTTTTGTAAA 58.299 37.500 0.00 0.00 0.00 2.01
5474 12207 6.314917 ACTCCCTCCATTCACTTTTGTAAAT 58.685 36.000 0.00 0.00 0.00 1.40
5475 12208 6.434340 ACTCCCTCCATTCACTTTTGTAAATC 59.566 38.462 0.00 0.00 0.00 2.17
5476 12209 5.414454 TCCCTCCATTCACTTTTGTAAATCG 59.586 40.000 0.00 0.00 0.00 3.34
5477 12210 5.183140 CCCTCCATTCACTTTTGTAAATCGT 59.817 40.000 0.00 0.00 0.00 3.73
5478 12211 6.294508 CCCTCCATTCACTTTTGTAAATCGTT 60.295 38.462 0.00 0.00 0.00 3.85
5479 12212 7.145323 CCTCCATTCACTTTTGTAAATCGTTT 58.855 34.615 0.00 0.00 0.00 3.60
5480 12213 7.326063 CCTCCATTCACTTTTGTAAATCGTTTC 59.674 37.037 0.00 0.00 0.00 2.78
5481 12214 7.708051 TCCATTCACTTTTGTAAATCGTTTCA 58.292 30.769 0.00 0.00 0.00 2.69
5482 12215 7.860373 TCCATTCACTTTTGTAAATCGTTTCAG 59.140 33.333 0.00 0.00 0.00 3.02
5483 12216 7.860373 CCATTCACTTTTGTAAATCGTTTCAGA 59.140 33.333 0.00 0.00 0.00 3.27
5484 12217 8.682016 CATTCACTTTTGTAAATCGTTTCAGAC 58.318 33.333 0.00 0.00 0.00 3.51
5485 12218 7.310072 TCACTTTTGTAAATCGTTTCAGACA 57.690 32.000 0.00 0.00 0.00 3.41
5486 12219 7.753659 TCACTTTTGTAAATCGTTTCAGACAA 58.246 30.769 0.00 0.00 0.00 3.18
5487 12220 7.694784 TCACTTTTGTAAATCGTTTCAGACAAC 59.305 33.333 0.00 0.00 0.00 3.32
5488 12221 7.696453 CACTTTTGTAAATCGTTTCAGACAACT 59.304 33.333 0.00 0.00 0.00 3.16
5489 12222 8.241367 ACTTTTGTAAATCGTTTCAGACAACTT 58.759 29.630 0.00 0.00 0.00 2.66
5490 12223 9.710979 CTTTTGTAAATCGTTTCAGACAACTTA 57.289 29.630 0.00 0.00 0.00 2.24
5496 12229 8.574196 AAATCGTTTCAGACAACTTAAAATGG 57.426 30.769 0.00 0.00 0.00 3.16
5497 12230 6.928979 TCGTTTCAGACAACTTAAAATGGA 57.071 33.333 0.00 0.00 0.00 3.41
5498 12231 6.721321 TCGTTTCAGACAACTTAAAATGGAC 58.279 36.000 0.00 0.00 0.00 4.02
5499 12232 6.540914 TCGTTTCAGACAACTTAAAATGGACT 59.459 34.615 0.00 0.00 0.00 3.85
5500 12233 6.632834 CGTTTCAGACAACTTAAAATGGACTG 59.367 38.462 0.00 0.00 0.00 3.51
5501 12234 7.480810 GTTTCAGACAACTTAAAATGGACTGT 58.519 34.615 0.00 0.00 31.75 3.55
5502 12235 7.639113 TTCAGACAACTTAAAATGGACTGTT 57.361 32.000 0.00 0.00 31.75 3.16
5503 12236 7.639113 TCAGACAACTTAAAATGGACTGTTT 57.361 32.000 0.00 0.00 31.75 2.83
5504 12237 8.062065 TCAGACAACTTAAAATGGACTGTTTT 57.938 30.769 0.00 0.00 33.67 2.43
5505 12238 7.973388 TCAGACAACTTAAAATGGACTGTTTTG 59.027 33.333 0.00 0.00 31.71 2.44
5506 12239 6.756542 AGACAACTTAAAATGGACTGTTTTGC 59.243 34.615 0.00 0.00 31.71 3.68
5507 12240 6.402222 ACAACTTAAAATGGACTGTTTTGCA 58.598 32.000 0.00 0.00 31.71 4.08
5508 12241 6.312672 ACAACTTAAAATGGACTGTTTTGCAC 59.687 34.615 0.00 0.00 31.71 4.57
5509 12242 5.971763 ACTTAAAATGGACTGTTTTGCACA 58.028 33.333 0.00 0.00 31.71 4.57
5510 12243 6.581712 ACTTAAAATGGACTGTTTTGCACAT 58.418 32.000 0.00 0.00 33.76 3.21
5511 12244 7.047271 ACTTAAAATGGACTGTTTTGCACATT 58.953 30.769 0.00 0.00 33.76 2.71
5512 12245 5.738118 AAAATGGACTGTTTTGCACATTG 57.262 34.783 0.00 0.00 33.76 2.82
5513 12246 2.222007 TGGACTGTTTTGCACATTGC 57.778 45.000 0.00 0.00 45.29 3.56
5514 12247 1.202510 TGGACTGTTTTGCACATTGCC 60.203 47.619 0.00 0.00 44.23 4.52
5515 12248 1.069049 GGACTGTTTTGCACATTGCCT 59.931 47.619 0.00 0.00 44.23 4.75
5516 12249 2.129607 GACTGTTTTGCACATTGCCTG 58.870 47.619 0.00 0.00 44.23 4.85
5517 12250 1.755959 ACTGTTTTGCACATTGCCTGA 59.244 42.857 0.00 0.00 44.23 3.86
5518 12251 2.168106 ACTGTTTTGCACATTGCCTGAA 59.832 40.909 0.00 0.00 44.23 3.02
5519 12252 3.196463 CTGTTTTGCACATTGCCTGAAA 58.804 40.909 0.00 0.00 44.23 2.69
5520 12253 3.806380 TGTTTTGCACATTGCCTGAAAT 58.194 36.364 0.00 0.00 44.23 2.17
5521 12254 3.560481 TGTTTTGCACATTGCCTGAAATG 59.440 39.130 0.00 0.00 44.23 2.32
5523 12256 2.728690 TGCACATTGCCTGAAATGTC 57.271 45.000 0.31 0.00 45.47 3.06
5524 12257 2.241160 TGCACATTGCCTGAAATGTCT 58.759 42.857 0.31 0.00 45.47 3.41
5525 12258 2.629137 TGCACATTGCCTGAAATGTCTT 59.371 40.909 0.31 0.00 45.47 3.01
5526 12259 3.248266 GCACATTGCCTGAAATGTCTTC 58.752 45.455 0.31 0.00 45.47 2.87
5527 12260 3.305539 GCACATTGCCTGAAATGTCTTCA 60.306 43.478 0.31 0.00 45.47 3.02
5528 12261 4.796946 GCACATTGCCTGAAATGTCTTCAA 60.797 41.667 0.31 0.00 45.47 2.69
5529 12262 4.921515 CACATTGCCTGAAATGTCTTCAAG 59.078 41.667 0.31 0.00 45.47 3.02
5530 12263 4.021719 ACATTGCCTGAAATGTCTTCAAGG 60.022 41.667 0.00 0.00 45.47 3.61
5531 12264 3.228188 TGCCTGAAATGTCTTCAAGGT 57.772 42.857 0.00 0.00 0.00 3.50
5532 12265 3.149196 TGCCTGAAATGTCTTCAAGGTC 58.851 45.455 0.00 0.00 0.00 3.85
5533 12266 3.149196 GCCTGAAATGTCTTCAAGGTCA 58.851 45.455 0.00 0.00 0.00 4.02
5534 12267 3.760684 GCCTGAAATGTCTTCAAGGTCAT 59.239 43.478 0.00 0.00 0.00 3.06
5535 12268 4.943705 GCCTGAAATGTCTTCAAGGTCATA 59.056 41.667 0.00 0.00 0.00 2.15
5536 12269 5.591877 GCCTGAAATGTCTTCAAGGTCATAT 59.408 40.000 0.00 0.00 0.00 1.78
5537 12270 6.767902 GCCTGAAATGTCTTCAAGGTCATATA 59.232 38.462 0.00 0.00 0.00 0.86
5538 12271 7.283127 GCCTGAAATGTCTTCAAGGTCATATAA 59.717 37.037 0.00 0.00 0.00 0.98
5539 12272 9.177608 CCTGAAATGTCTTCAAGGTCATATAAA 57.822 33.333 0.00 0.00 0.00 1.40
5544 12277 9.739276 AATGTCTTCAAGGTCATATAAAAGTGA 57.261 29.630 0.00 0.00 0.00 3.41
5545 12278 9.739276 ATGTCTTCAAGGTCATATAAAAGTGAA 57.261 29.630 0.00 0.00 0.00 3.18
5546 12279 8.999431 TGTCTTCAAGGTCATATAAAAGTGAAC 58.001 33.333 0.00 0.00 32.23 3.18
5547 12280 8.999431 GTCTTCAAGGTCATATAAAAGTGAACA 58.001 33.333 0.00 0.00 34.52 3.18
5548 12281 9.219603 TCTTCAAGGTCATATAAAAGTGAACAG 57.780 33.333 0.00 0.00 34.52 3.16
5549 12282 9.219603 CTTCAAGGTCATATAAAAGTGAACAGA 57.780 33.333 0.00 0.00 34.52 3.41
5550 12283 8.777865 TCAAGGTCATATAAAAGTGAACAGAG 57.222 34.615 0.00 0.00 34.52 3.35
5551 12284 8.593679 TCAAGGTCATATAAAAGTGAACAGAGA 58.406 33.333 0.00 0.00 34.52 3.10
5552 12285 8.877779 CAAGGTCATATAAAAGTGAACAGAGAG 58.122 37.037 0.00 0.00 34.52 3.20
5553 12286 8.367660 AGGTCATATAAAAGTGAACAGAGAGA 57.632 34.615 0.00 0.00 34.52 3.10
5554 12287 8.474025 AGGTCATATAAAAGTGAACAGAGAGAG 58.526 37.037 0.00 0.00 34.52 3.20
5555 12288 8.254508 GGTCATATAAAAGTGAACAGAGAGAGT 58.745 37.037 0.00 0.00 32.36 3.24
5579 12312 6.161855 AGCTTATTAATGGACGAGACATGA 57.838 37.500 0.00 0.00 0.00 3.07
5588 12321 3.055591 GGACGAGACATGATATGCACTG 58.944 50.000 0.00 0.00 0.00 3.66
5778 12512 2.104792 AGCAACTGGTGTACACACTGAT 59.895 45.455 26.51 13.29 45.73 2.90
5829 12563 2.217510 ACACACTGATACGTCCCTCT 57.782 50.000 0.00 0.00 0.00 3.69
5890 12638 4.962836 AGCCTGCGCTGCCACTTT 62.963 61.111 17.00 0.00 46.19 2.66
5926 12674 1.382557 TCCTCCTATTCAGCGCCCA 60.383 57.895 2.29 0.00 0.00 5.36
5929 12677 1.040646 CTCCTATTCAGCGCCCACTA 58.959 55.000 2.29 0.00 0.00 2.74
5963 12711 0.177141 TATGTGGTTCACGGCCTAGC 59.823 55.000 0.00 0.00 37.14 3.42
5977 12725 0.175302 CCTAGCCTGTGAGCTCACTG 59.825 60.000 38.81 36.60 46.55 3.66
5981 12729 2.046507 CTGTGAGCTCACTGGGCC 60.047 66.667 38.81 18.69 46.55 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 2.821366 GTGGATGGTGCAGGAGCG 60.821 66.667 0.00 0.00 46.23 5.03
93 94 4.343323 CCCGTGGTGGATGGTGCA 62.343 66.667 0.00 0.00 42.00 4.57
114 115 1.215382 CCAGATCCGTGCGTCTTCA 59.785 57.895 0.00 0.00 0.00 3.02
123 2080 2.366837 TGGATGGGCCAGATCCGT 60.367 61.111 22.11 0.00 43.33 4.69
130 2087 4.504596 GCCGATGTGGATGGGCCA 62.505 66.667 9.61 9.61 45.44 5.36
223 2180 2.203126 GCTGGGAAGCTCGATGGG 60.203 66.667 0.00 0.00 0.00 4.00
230 2187 4.021925 GGTGGACGCTGGGAAGCT 62.022 66.667 0.00 0.00 0.00 3.74
369 2327 4.516195 GCTCCCTTCGGGCGACTC 62.516 72.222 0.00 0.00 43.94 3.36
401 2359 4.285851 CTGAACAGCTTCCCCGAC 57.714 61.111 0.00 0.00 0.00 4.79
411 2369 4.915667 CAGTTTCATTCATGTGCTGAACAG 59.084 41.667 0.00 0.00 46.37 3.16
412 2370 4.579753 TCAGTTTCATTCATGTGCTGAACA 59.420 37.500 0.00 0.00 46.37 3.18
413 2371 5.112220 TCAGTTTCATTCATGTGCTGAAC 57.888 39.130 6.79 2.74 46.37 3.18
415 2373 4.823442 AGTTCAGTTTCATTCATGTGCTGA 59.177 37.500 0.00 0.00 33.25 4.26
416 2374 5.117355 AGTTCAGTTTCATTCATGTGCTG 57.883 39.130 0.00 0.00 0.00 4.41
417 2375 5.561532 CGAAGTTCAGTTTCATTCATGTGCT 60.562 40.000 3.32 0.00 0.00 4.40
418 2376 4.614284 CGAAGTTCAGTTTCATTCATGTGC 59.386 41.667 3.32 0.00 0.00 4.57
419 2377 5.751680 ACGAAGTTCAGTTTCATTCATGTG 58.248 37.500 3.32 0.00 37.78 3.21
421 2379 7.730226 AACTGACGAAGTTCAGTTTCATTCATG 60.730 37.037 12.04 0.00 46.60 3.07
422 2380 6.260936 AACTGACGAAGTTCAGTTTCATTCAT 59.739 34.615 12.04 0.00 46.60 2.57
423 2381 5.584649 AACTGACGAAGTTCAGTTTCATTCA 59.415 36.000 12.04 0.00 46.60 2.57
424 2382 5.904080 CAACTGACGAAGTTCAGTTTCATTC 59.096 40.000 14.47 0.00 46.60 2.67
425 2383 5.730568 GCAACTGACGAAGTTCAGTTTCATT 60.731 40.000 14.47 0.00 46.60 2.57
426 2384 4.260784 GCAACTGACGAAGTTCAGTTTCAT 60.261 41.667 14.47 0.00 46.60 2.57
427 2385 3.063452 GCAACTGACGAAGTTCAGTTTCA 59.937 43.478 14.47 0.90 46.60 2.69
428 2386 3.546218 GGCAACTGACGAAGTTCAGTTTC 60.546 47.826 14.47 10.83 46.60 2.78
429 2387 2.354821 GGCAACTGACGAAGTTCAGTTT 59.645 45.455 14.47 1.19 46.60 2.66
430 2388 1.940613 GGCAACTGACGAAGTTCAGTT 59.059 47.619 12.04 12.04 46.60 3.16
431 2389 1.583054 GGCAACTGACGAAGTTCAGT 58.417 50.000 3.32 0.83 46.60 3.41
585 2854 4.009675 TGGTCACTGTCTTGGAAATATGC 58.990 43.478 0.00 0.00 0.00 3.14
601 2870 2.430921 CCGAGCGACTGTGGTCAC 60.431 66.667 0.00 0.00 42.21 3.67
706 2997 2.052690 GTGAGAGTGCGCCCCTCTA 61.053 63.158 22.23 11.11 39.36 2.43
740 3031 1.765597 AACGGGGTTCAGGTCAGGAC 61.766 60.000 0.00 0.00 0.00 3.85
922 3217 4.828925 GAGCAGGACAGCCGGAGC 62.829 72.222 5.05 0.00 39.96 4.70
951 3246 2.680352 GGGAGCGAGGTGAGGTGA 60.680 66.667 0.00 0.00 0.00 4.02
952 3247 4.135153 CGGGAGCGAGGTGAGGTG 62.135 72.222 0.00 0.00 0.00 4.00
953 3248 2.569218 ATACGGGAGCGAGGTGAGGT 62.569 60.000 0.00 0.00 0.00 3.85
954 3249 0.536687 TATACGGGAGCGAGGTGAGG 60.537 60.000 0.00 0.00 0.00 3.86
955 3250 1.315690 TTATACGGGAGCGAGGTGAG 58.684 55.000 0.00 0.00 0.00 3.51
982 3277 1.607612 CGTGGATTTAGGCAGGGGT 59.392 57.895 0.00 0.00 0.00 4.95
1159 3454 2.432628 GACGTGGCCTCGGTGAAG 60.433 66.667 28.94 0.81 34.94 3.02
1469 3764 1.447140 GGCGATCGTACAGCACCAA 60.447 57.895 17.81 0.00 0.00 3.67
1543 3838 1.663379 GGTATCCAGCCGTTTTGCCC 61.663 60.000 0.00 0.00 0.00 5.36
1549 3844 0.249398 GACTGTGGTATCCAGCCGTT 59.751 55.000 0.00 0.00 32.34 4.44
1555 3850 0.530744 GAGTGCGACTGTGGTATCCA 59.469 55.000 0.00 0.00 0.00 3.41
1583 3878 8.132995 CGCCGAATACATGATACCATACTTATA 58.867 37.037 0.00 0.00 0.00 0.98
1585 3880 6.071784 ACGCCGAATACATGATACCATACTTA 60.072 38.462 0.00 0.00 0.00 2.24
1589 3884 4.794278 ACGCCGAATACATGATACCATA 57.206 40.909 0.00 0.00 0.00 2.74
1590 3885 3.678056 ACGCCGAATACATGATACCAT 57.322 42.857 0.00 0.00 0.00 3.55
1591 3886 3.386486 GAACGCCGAATACATGATACCA 58.614 45.455 0.00 0.00 0.00 3.25
1592 3887 2.407361 CGAACGCCGAATACATGATACC 59.593 50.000 0.00 0.00 41.76 2.73
1593 3888 3.047796 ACGAACGCCGAATACATGATAC 58.952 45.455 0.00 0.00 41.76 2.24
1594 3889 3.047093 CACGAACGCCGAATACATGATA 58.953 45.455 0.00 0.00 41.76 2.15
1600 3895 1.843992 ATACCACGAACGCCGAATAC 58.156 50.000 4.79 0.00 41.76 1.89
1601 3896 2.582728 AATACCACGAACGCCGAATA 57.417 45.000 4.79 0.00 41.76 1.75
1608 3903 6.019152 CACCTGATTTTAAATACCACGAACG 58.981 40.000 0.00 0.00 0.00 3.95
1613 3908 7.375053 TCAAAGCACCTGATTTTAAATACCAC 58.625 34.615 0.00 0.00 30.39 4.16
1614 3909 7.309744 CCTCAAAGCACCTGATTTTAAATACCA 60.310 37.037 0.00 0.00 30.39 3.25
1615 3910 7.035612 CCTCAAAGCACCTGATTTTAAATACC 58.964 38.462 0.00 0.00 30.39 2.73
1625 3920 4.460382 CACATAAACCTCAAAGCACCTGAT 59.540 41.667 0.00 0.00 0.00 2.90
1646 3941 3.911868 TCATTGGCATTGCAAACTACAC 58.088 40.909 11.39 0.00 0.00 2.90
1648 3943 6.275335 ACATATCATTGGCATTGCAAACTAC 58.725 36.000 11.39 0.00 0.00 2.73
1656 4110 6.020971 AGTGCATACATATCATTGGCATTG 57.979 37.500 3.01 3.01 31.92 2.82
1673 4127 4.342092 AGCCAACAAACTTAGAAAGTGCAT 59.658 37.500 0.00 0.00 41.91 3.96
1692 4146 1.746787 CTGCATTACATGAGCAAGCCA 59.253 47.619 0.00 0.00 37.89 4.75
1823 4280 7.164122 TCATCGACCGGTACTAGATAACTATT 58.836 38.462 7.34 0.00 0.00 1.73
1839 4299 5.171147 ACTACTACAAGAATCATCGACCG 57.829 43.478 0.00 0.00 0.00 4.79
1860 4320 2.027100 CCTCCCTTCTACCAAGTGGAAC 60.027 54.545 3.83 0.00 38.94 3.62
1861 4321 2.266279 CCTCCCTTCTACCAAGTGGAA 58.734 52.381 3.83 0.00 38.94 3.53
1863 4323 0.253327 GCCTCCCTTCTACCAAGTGG 59.747 60.000 0.00 0.00 42.17 4.00
1864 4324 0.253327 GGCCTCCCTTCTACCAAGTG 59.747 60.000 0.00 0.00 0.00 3.16
1865 4325 0.178873 TGGCCTCCCTTCTACCAAGT 60.179 55.000 3.32 0.00 0.00 3.16
1867 4327 1.681229 ATTGGCCTCCCTTCTACCAA 58.319 50.000 3.32 0.00 44.04 3.67
1868 4328 1.681229 AATTGGCCTCCCTTCTACCA 58.319 50.000 3.32 0.00 0.00 3.25
1869 4329 2.242452 AGAAATTGGCCTCCCTTCTACC 59.758 50.000 3.32 0.00 0.00 3.18
1877 4344 3.891049 AGTCATACAGAAATTGGCCTCC 58.109 45.455 3.32 0.00 0.00 4.30
1880 4347 6.318648 TGTGAATAGTCATACAGAAATTGGCC 59.681 38.462 0.00 0.00 35.80 5.36
1896 4363 6.157645 AGGATCAAGGACTTCATGTGAATAGT 59.842 38.462 0.00 0.00 33.01 2.12
1899 4366 5.447778 AGGATCAAGGACTTCATGTGAAT 57.552 39.130 0.00 0.00 33.01 2.57
1907 4374 6.540551 GTCCATTTTCTAGGATCAAGGACTTC 59.459 42.308 0.00 0.00 39.79 3.01
1928 4395 1.214175 TGCTTTCCTCCAAACTGTCCA 59.786 47.619 0.00 0.00 0.00 4.02
1929 4396 1.882623 CTGCTTTCCTCCAAACTGTCC 59.117 52.381 0.00 0.00 0.00 4.02
1935 4403 1.143684 ACTCAGCTGCTTTCCTCCAAA 59.856 47.619 9.47 0.00 0.00 3.28
1958 4426 4.928615 GCACATGCAACAAAGCCTAAATTA 59.071 37.500 0.00 0.00 41.59 1.40
2001 4469 1.805345 CAAACTCAAGCCAGCAGAGAG 59.195 52.381 16.01 10.52 33.69 3.20
2002 4470 1.141657 ACAAACTCAAGCCAGCAGAGA 59.858 47.619 16.01 0.04 33.69 3.10
2003 4471 1.534595 GACAAACTCAAGCCAGCAGAG 59.465 52.381 9.66 9.66 35.56 3.35
2004 4472 1.597742 GACAAACTCAAGCCAGCAGA 58.402 50.000 0.00 0.00 0.00 4.26
2005 4473 0.595095 GGACAAACTCAAGCCAGCAG 59.405 55.000 0.00 0.00 0.00 4.24
2006 4474 0.106769 TGGACAAACTCAAGCCAGCA 60.107 50.000 0.00 0.00 0.00 4.41
2007 4475 0.595095 CTGGACAAACTCAAGCCAGC 59.405 55.000 0.00 0.00 39.60 4.85
2008 4476 0.595095 GCTGGACAAACTCAAGCCAG 59.405 55.000 0.00 0.00 46.82 4.85
2009 4477 0.106769 TGCTGGACAAACTCAAGCCA 60.107 50.000 0.00 0.00 0.00 4.75
2010 4478 1.251251 ATGCTGGACAAACTCAAGCC 58.749 50.000 0.00 0.00 0.00 4.35
2011 4479 4.708726 ATAATGCTGGACAAACTCAAGC 57.291 40.909 0.00 0.00 0.00 4.01
2012 4480 7.538678 GTGTTTATAATGCTGGACAAACTCAAG 59.461 37.037 0.00 0.00 0.00 3.02
2013 4481 7.367285 GTGTTTATAATGCTGGACAAACTCAA 58.633 34.615 0.00 0.00 0.00 3.02
2014 4482 6.072175 GGTGTTTATAATGCTGGACAAACTCA 60.072 38.462 0.00 0.00 0.00 3.41
2015 4483 6.151144 AGGTGTTTATAATGCTGGACAAACTC 59.849 38.462 0.00 0.00 0.00 3.01
2016 4484 6.010219 AGGTGTTTATAATGCTGGACAAACT 58.990 36.000 0.00 0.00 0.00 2.66
2017 4485 6.151144 AGAGGTGTTTATAATGCTGGACAAAC 59.849 38.462 0.00 0.00 0.00 2.93
2018 4486 6.245408 AGAGGTGTTTATAATGCTGGACAAA 58.755 36.000 0.00 0.00 0.00 2.83
2019 4487 5.815581 AGAGGTGTTTATAATGCTGGACAA 58.184 37.500 0.00 0.00 0.00 3.18
2020 4488 5.189736 AGAGAGGTGTTTATAATGCTGGACA 59.810 40.000 0.00 0.00 0.00 4.02
2021 4489 5.525378 CAGAGAGGTGTTTATAATGCTGGAC 59.475 44.000 0.00 0.00 0.00 4.02
2022 4490 5.189736 ACAGAGAGGTGTTTATAATGCTGGA 59.810 40.000 0.00 0.00 0.00 3.86
2023 4491 5.295292 CACAGAGAGGTGTTTATAATGCTGG 59.705 44.000 0.00 0.00 34.09 4.85
2024 4492 6.355397 CACAGAGAGGTGTTTATAATGCTG 57.645 41.667 0.00 0.00 34.09 4.41
2039 4507 2.005451 GTGGCTATTGCACACAGAGAG 58.995 52.381 13.01 0.00 41.91 3.20
2044 4512 2.038952 AGAAGAGTGGCTATTGCACACA 59.961 45.455 17.65 0.00 40.41 3.72
2045 4513 2.417933 CAGAAGAGTGGCTATTGCACAC 59.582 50.000 10.94 10.94 41.91 3.82
2046 4514 2.038952 ACAGAAGAGTGGCTATTGCACA 59.961 45.455 0.66 0.00 41.91 4.57
2057 4525 7.831753 TGGAGAAGTATTTCTACAGAAGAGTG 58.168 38.462 8.76 0.00 46.90 3.51
2102 4579 8.202461 TCTACCACCTCTGAAAGATTTTAAGA 57.798 34.615 0.00 0.00 45.62 2.10
2103 4580 8.314751 TCTCTACCACCTCTGAAAGATTTTAAG 58.685 37.037 0.00 0.00 45.62 1.85
2110 4587 4.480115 TGTTCTCTACCACCTCTGAAAGA 58.520 43.478 0.00 0.00 43.69 2.52
2111 4588 4.873746 TGTTCTCTACCACCTCTGAAAG 57.126 45.455 0.00 0.00 0.00 2.62
2113 4590 5.623956 TTTTGTTCTCTACCACCTCTGAA 57.376 39.130 0.00 0.00 0.00 3.02
2114 4591 5.825593 ATTTTGTTCTCTACCACCTCTGA 57.174 39.130 0.00 0.00 0.00 3.27
2115 4592 6.037610 GCATATTTTGTTCTCTACCACCTCTG 59.962 42.308 0.00 0.00 0.00 3.35
2116 4593 6.116126 GCATATTTTGTTCTCTACCACCTCT 58.884 40.000 0.00 0.00 0.00 3.69
2117 4594 5.297029 GGCATATTTTGTTCTCTACCACCTC 59.703 44.000 0.00 0.00 0.00 3.85
2118 4595 5.193679 GGCATATTTTGTTCTCTACCACCT 58.806 41.667 0.00 0.00 0.00 4.00
2119 4596 4.947388 TGGCATATTTTGTTCTCTACCACC 59.053 41.667 0.00 0.00 0.00 4.61
2120 4597 6.509418 TTGGCATATTTTGTTCTCTACCAC 57.491 37.500 0.00 0.00 0.00 4.16
2121 4598 7.716799 ATTTGGCATATTTTGTTCTCTACCA 57.283 32.000 0.00 0.00 0.00 3.25
2171 4799 7.461749 ACTTGGTAGGATGATCTTTTTCTTGA 58.538 34.615 0.00 0.00 0.00 3.02
2184 4813 3.270877 GCTGTTGGTACTTGGTAGGATG 58.729 50.000 0.00 0.00 0.00 3.51
2195 4824 6.183360 GGATTTTCAATAGAGGCTGTTGGTAC 60.183 42.308 0.00 0.00 34.20 3.34
2196 4825 5.885912 GGATTTTCAATAGAGGCTGTTGGTA 59.114 40.000 0.00 0.00 34.20 3.25
2197 4826 4.706962 GGATTTTCAATAGAGGCTGTTGGT 59.293 41.667 0.00 0.00 34.20 3.67
2200 4829 4.934356 TGGGATTTTCAATAGAGGCTGTT 58.066 39.130 0.00 0.00 0.00 3.16
2202 4831 7.771927 ATATTGGGATTTTCAATAGAGGCTG 57.228 36.000 0.00 0.00 39.50 4.85
2203 4832 7.234166 CCAATATTGGGATTTTCAATAGAGGCT 59.766 37.037 24.61 0.00 44.70 4.58
2204 4833 7.381323 CCAATATTGGGATTTTCAATAGAGGC 58.619 38.462 24.61 0.00 44.70 4.70
2224 4853 5.011738 GGAGATCGGAACAAGTATCCCAATA 59.988 44.000 0.00 0.00 33.13 1.90
2228 4857 2.037381 GGGAGATCGGAACAAGTATCCC 59.963 54.545 0.00 0.00 38.51 3.85
2233 4862 2.239681 AGAGGGAGATCGGAACAAGT 57.760 50.000 0.00 0.00 0.00 3.16
2254 4883 7.485810 TGAGGATATCTATGTTCGACGAAAAA 58.514 34.615 12.67 4.21 0.00 1.94
2259 4888 5.614923 ACTGAGGATATCTATGTTCGACG 57.385 43.478 2.05 0.00 0.00 5.12
2263 4892 7.362574 GCTGGAGTACTGAGGATATCTATGTTC 60.363 44.444 0.00 0.00 0.00 3.18
2280 4909 2.414824 CGTCAGTTCTCTGCTGGAGTAC 60.415 54.545 0.00 8.22 42.40 2.73
2290 4919 3.637998 TTTCGCTAACGTCAGTTCTCT 57.362 42.857 0.00 0.00 41.49 3.10
2298 4927 6.988109 ACATATCACTATTTCGCTAACGTC 57.012 37.500 0.00 0.00 41.18 4.34
2306 4935 9.760077 AAGGTAAAGGTACATATCACTATTTCG 57.240 33.333 0.00 0.00 31.21 3.46
2309 4938 9.220906 TCCAAGGTAAAGGTACATATCACTATT 57.779 33.333 0.00 0.00 31.21 1.73
2606 5235 1.528586 CAAGAATGATAGAAGCGGGCG 59.471 52.381 0.00 0.00 0.00 6.13
2690 5320 2.342651 CAGCTGTGACGAAGATTACACG 59.657 50.000 5.25 0.00 36.25 4.49
2731 5361 4.736126 TCCATTCGAGAAGTAGATGCAA 57.264 40.909 0.00 0.00 0.00 4.08
2751 5381 8.831550 ACTAAATCAGACAGAAGTTTCAAGTTC 58.168 33.333 0.00 0.00 38.37 3.01
2878 5508 4.432712 CAAATGGGGTATTAGTGCAAAGC 58.567 43.478 0.00 0.00 0.00 3.51
2893 5523 3.287867 ACACAGAGATAGGCAAATGGG 57.712 47.619 0.00 0.00 0.00 4.00
2952 5582 6.415867 GGCAAGTCTTTTACCTCGTTAAAAAC 59.584 38.462 0.00 0.00 0.00 2.43
3038 5670 2.701951 CGGTATGGGTGGTTGTATAGGT 59.298 50.000 0.00 0.00 0.00 3.08
3123 5755 2.281484 GCGGTGCTTCCCTCAACA 60.281 61.111 0.00 0.00 0.00 3.33
3124 5756 2.032681 AGCGGTGCTTCCCTCAAC 59.967 61.111 0.00 0.00 33.89 3.18
3126 5758 2.922503 TCAGCGGTGCTTCCCTCA 60.923 61.111 10.38 0.00 36.40 3.86
3175 5812 4.261405 CGAAGTCAGAGTCACTTGTTCTCT 60.261 45.833 0.82 0.00 38.83 3.10
3180 5817 1.269831 GGCGAAGTCAGAGTCACTTGT 60.270 52.381 0.82 0.00 34.10 3.16
3277 5991 4.322385 GCGGTCCGGTTGTTGTGC 62.322 66.667 14.38 0.00 0.00 4.57
3346 6067 3.560068 GCCGTAGTTTGTATGCTGCTATT 59.440 43.478 0.00 0.00 0.00 1.73
3430 6151 0.179129 CGTGCCAATGATGAAAGGGC 60.179 55.000 0.00 0.00 44.82 5.19
3457 6178 1.542030 AGTCTGCAGTAGTTGGTCTCG 59.458 52.381 14.67 0.00 0.00 4.04
3499 6220 3.391965 GCATCAATTTTGGAGTTGTGCA 58.608 40.909 0.00 0.00 34.99 4.57
3555 6276 2.113860 AGATCCGTGTGGTTGGATTG 57.886 50.000 0.00 0.00 44.92 2.67
3556 6277 3.104512 TCTAGATCCGTGTGGTTGGATT 58.895 45.455 0.00 0.00 44.92 3.01
3596 6317 1.556911 TGCTCTCTTTCCCCTCATGAC 59.443 52.381 0.00 0.00 0.00 3.06
3600 6321 1.556911 GTGATGCTCTCTTTCCCCTCA 59.443 52.381 0.00 0.00 0.00 3.86
3645 6366 3.244078 ACAATGACGCTTCCAAGTACTGA 60.244 43.478 0.00 0.00 0.00 3.41
3681 6402 1.823295 GCCTTGTCTCTGGCCGATA 59.177 57.895 0.00 0.00 43.11 2.92
3794 6515 0.034198 TCCGGACAATTTCGCTGACA 59.966 50.000 0.00 0.00 0.00 3.58
3886 6607 0.442310 CACGTTGTTGGATGCCTACG 59.558 55.000 0.00 0.00 32.19 3.51
3920 6641 3.509757 CGAGAGGCGGAAGAGCGA 61.510 66.667 0.00 0.00 38.18 4.93
3953 6679 2.275134 ACAGGCATGAATGTGACACA 57.725 45.000 11.41 11.41 0.00 3.72
4046 6799 1.322442 GTGCTTGGAGTTGGCTTCTT 58.678 50.000 0.00 0.00 0.00 2.52
4048 6801 1.856265 CGGTGCTTGGAGTTGGCTTC 61.856 60.000 0.00 0.00 0.00 3.86
4059 6812 1.444895 GGCTTGAATGCGGTGCTTG 60.445 57.895 0.00 0.00 0.00 4.01
4060 6813 2.964978 GGCTTGAATGCGGTGCTT 59.035 55.556 0.00 0.00 0.00 3.91
4061 6814 3.434319 CGGCTTGAATGCGGTGCT 61.434 61.111 0.00 0.00 0.00 4.40
4063 6816 4.481112 GGCGGCTTGAATGCGGTG 62.481 66.667 0.00 0.00 35.98 4.94
4114 6867 9.537192 CACGAAAAAGTATTACCATGATACCTA 57.463 33.333 0.00 0.00 31.76 3.08
4145 6932 1.755783 CAGGGCAGGGCATTCCTTC 60.756 63.158 0.00 0.00 45.47 3.46
4590 7378 6.212955 TGCAAATACCTACAGCAAAAGAAAC 58.787 36.000 0.00 0.00 31.42 2.78
4654 7442 9.396022 GATAATTATCAGAGTTGGAGAAACCAA 57.604 33.333 18.67 0.00 42.58 3.67
4731 7519 6.506513 GCGACGAGTTCTCATTATTAAGTGTG 60.507 42.308 0.00 0.00 0.00 3.82
4732 7520 5.515626 GCGACGAGTTCTCATTATTAAGTGT 59.484 40.000 0.00 0.00 0.00 3.55
4914 7703 1.904287 TATGCTTCCCGTGTTTGCTT 58.096 45.000 0.00 0.00 0.00 3.91
5017 7806 7.415541 GCAGTTCAGTAGATTATGCCAAATCAA 60.416 37.037 9.91 0.00 38.16 2.57
5055 7844 5.475564 TCCAAGACCAAAACTAAACTATGCC 59.524 40.000 0.00 0.00 0.00 4.40
5123 7912 7.278868 CCTAAACAAAGTAATGCTACAGAGGAG 59.721 40.741 0.00 0.00 0.00 3.69
5175 11908 4.669206 ACAGATGAGCCTGACAGAATAG 57.331 45.455 3.32 0.00 37.59 1.73
5231 11964 1.911766 GAACCCTCGACTGGTCCCA 60.912 63.158 2.48 0.00 34.15 4.37
5313 12046 9.461312 ACACATAGCAAAACTAATGATTAAGGA 57.539 29.630 0.00 0.00 33.57 3.36
5363 12096 9.807921 AGATAACAGGAGAAGTAATTGGAAAAA 57.192 29.630 0.00 0.00 0.00 1.94
5364 12097 9.807921 AAGATAACAGGAGAAGTAATTGGAAAA 57.192 29.630 0.00 0.00 0.00 2.29
5401 12134 9.964354 GAGAATTTAGGTTTAGTAGGGGTTTAA 57.036 33.333 0.00 0.00 0.00 1.52
5410 12143 9.871238 CACAAGCTAGAGAATTTAGGTTTAGTA 57.129 33.333 0.00 0.00 36.89 1.82
5451 12184 6.403636 CGATTTACAAAAGTGAATGGAGGGAG 60.404 42.308 0.00 0.00 0.00 4.30
5452 12185 5.414454 CGATTTACAAAAGTGAATGGAGGGA 59.586 40.000 0.00 0.00 0.00 4.20
5453 12186 5.183140 ACGATTTACAAAAGTGAATGGAGGG 59.817 40.000 0.00 0.00 0.00 4.30
5454 12187 6.254281 ACGATTTACAAAAGTGAATGGAGG 57.746 37.500 0.00 0.00 0.00 4.30
5455 12188 7.860373 TGAAACGATTTACAAAAGTGAATGGAG 59.140 33.333 0.00 0.00 0.00 3.86
5456 12189 7.708051 TGAAACGATTTACAAAAGTGAATGGA 58.292 30.769 0.00 0.00 0.00 3.41
5457 12190 7.860373 TCTGAAACGATTTACAAAAGTGAATGG 59.140 33.333 0.00 0.00 0.00 3.16
5458 12191 8.682016 GTCTGAAACGATTTACAAAAGTGAATG 58.318 33.333 0.00 0.00 0.00 2.67
5459 12192 8.402472 TGTCTGAAACGATTTACAAAAGTGAAT 58.598 29.630 0.00 0.00 0.00 2.57
5460 12193 7.753659 TGTCTGAAACGATTTACAAAAGTGAA 58.246 30.769 0.00 0.00 0.00 3.18
5461 12194 7.310072 TGTCTGAAACGATTTACAAAAGTGA 57.690 32.000 0.00 0.00 0.00 3.41
5462 12195 7.696453 AGTTGTCTGAAACGATTTACAAAAGTG 59.304 33.333 0.00 0.00 35.13 3.16
5463 12196 7.758495 AGTTGTCTGAAACGATTTACAAAAGT 58.242 30.769 0.00 0.00 35.13 2.66
5464 12197 8.614994 AAGTTGTCTGAAACGATTTACAAAAG 57.385 30.769 0.00 0.00 35.13 2.27
5470 12203 9.672086 CCATTTTAAGTTGTCTGAAACGATTTA 57.328 29.630 0.00 0.00 35.13 1.40
5471 12204 8.410141 TCCATTTTAAGTTGTCTGAAACGATTT 58.590 29.630 0.00 0.00 35.13 2.17
5472 12205 7.860872 GTCCATTTTAAGTTGTCTGAAACGATT 59.139 33.333 0.00 0.00 35.13 3.34
5473 12206 7.228706 AGTCCATTTTAAGTTGTCTGAAACGAT 59.771 33.333 0.00 0.00 35.13 3.73
5474 12207 6.540914 AGTCCATTTTAAGTTGTCTGAAACGA 59.459 34.615 0.00 0.00 35.13 3.85
5475 12208 6.632834 CAGTCCATTTTAAGTTGTCTGAAACG 59.367 38.462 0.00 0.00 35.13 3.60
5476 12209 7.480810 ACAGTCCATTTTAAGTTGTCTGAAAC 58.519 34.615 0.00 0.00 0.00 2.78
5477 12210 7.639113 ACAGTCCATTTTAAGTTGTCTGAAA 57.361 32.000 0.00 0.00 0.00 2.69
5478 12211 7.639113 AACAGTCCATTTTAAGTTGTCTGAA 57.361 32.000 0.00 0.00 0.00 3.02
5479 12212 7.639113 AAACAGTCCATTTTAAGTTGTCTGA 57.361 32.000 0.00 0.00 0.00 3.27
5480 12213 7.254084 GCAAAACAGTCCATTTTAAGTTGTCTG 60.254 37.037 0.00 0.00 0.00 3.51
5481 12214 6.756542 GCAAAACAGTCCATTTTAAGTTGTCT 59.243 34.615 0.00 0.00 0.00 3.41
5482 12215 6.533367 TGCAAAACAGTCCATTTTAAGTTGTC 59.467 34.615 0.00 0.00 0.00 3.18
5483 12216 6.312672 GTGCAAAACAGTCCATTTTAAGTTGT 59.687 34.615 0.00 0.00 0.00 3.32
5484 12217 6.312426 TGTGCAAAACAGTCCATTTTAAGTTG 59.688 34.615 0.00 0.00 33.78 3.16
5485 12218 6.402222 TGTGCAAAACAGTCCATTTTAAGTT 58.598 32.000 0.00 0.00 33.78 2.66
5486 12219 5.971763 TGTGCAAAACAGTCCATTTTAAGT 58.028 33.333 0.00 0.00 33.78 2.24
5487 12220 7.346695 CAATGTGCAAAACAGTCCATTTTAAG 58.653 34.615 0.00 0.00 43.64 1.85
5488 12221 6.238320 GCAATGTGCAAAACAGTCCATTTTAA 60.238 34.615 0.00 0.00 43.64 1.52
5489 12222 5.236047 GCAATGTGCAAAACAGTCCATTTTA 59.764 36.000 0.00 0.00 43.64 1.52
5490 12223 4.035441 GCAATGTGCAAAACAGTCCATTTT 59.965 37.500 0.00 0.00 43.64 1.82
5491 12224 3.560896 GCAATGTGCAAAACAGTCCATTT 59.439 39.130 0.00 0.00 43.64 2.32
5492 12225 3.132925 GCAATGTGCAAAACAGTCCATT 58.867 40.909 0.00 0.00 43.64 3.16
5493 12226 2.758009 GCAATGTGCAAAACAGTCCAT 58.242 42.857 0.00 0.00 43.64 3.41
5494 12227 2.222007 GCAATGTGCAAAACAGTCCA 57.778 45.000 0.00 0.00 43.64 4.02
5498 12231 8.410652 GACATTTCAGGCAATGTGCAAAACAG 62.411 42.308 6.43 0.54 45.55 3.16
5499 12232 6.702165 GACATTTCAGGCAATGTGCAAAACA 61.702 40.000 6.43 0.00 45.55 2.83
5500 12233 4.318974 GACATTTCAGGCAATGTGCAAAAC 60.319 41.667 6.43 0.00 45.55 2.43
5501 12234 3.808726 GACATTTCAGGCAATGTGCAAAA 59.191 39.130 6.43 0.63 45.55 2.44
5502 12235 3.069872 AGACATTTCAGGCAATGTGCAAA 59.930 39.130 6.43 0.00 45.55 3.68
5503 12236 2.629137 AGACATTTCAGGCAATGTGCAA 59.371 40.909 6.43 0.00 45.55 4.08
5504 12237 2.241160 AGACATTTCAGGCAATGTGCA 58.759 42.857 6.43 0.00 45.55 4.57
5505 12238 3.248266 GAAGACATTTCAGGCAATGTGC 58.752 45.455 6.43 0.00 45.55 4.57
5506 12239 4.508461 TGAAGACATTTCAGGCAATGTG 57.492 40.909 6.43 0.00 45.55 3.21
5508 12241 4.021719 ACCTTGAAGACATTTCAGGCAATG 60.022 41.667 0.00 0.00 39.67 2.82
5509 12242 4.154942 ACCTTGAAGACATTTCAGGCAAT 58.845 39.130 0.00 0.00 0.00 3.56
5510 12243 3.565307 ACCTTGAAGACATTTCAGGCAA 58.435 40.909 0.00 0.00 0.00 4.52
5511 12244 3.149196 GACCTTGAAGACATTTCAGGCA 58.851 45.455 0.00 0.00 0.00 4.75
5512 12245 3.149196 TGACCTTGAAGACATTTCAGGC 58.851 45.455 0.00 0.00 0.00 4.85
5513 12246 8.737168 TTATATGACCTTGAAGACATTTCAGG 57.263 34.615 9.27 0.00 0.00 3.86
5518 12251 9.739276 TCACTTTTATATGACCTTGAAGACATT 57.261 29.630 9.27 3.08 0.00 2.71
5519 12252 9.739276 TTCACTTTTATATGACCTTGAAGACAT 57.261 29.630 0.00 2.12 0.00 3.06
5520 12253 8.999431 GTTCACTTTTATATGACCTTGAAGACA 58.001 33.333 0.00 0.00 0.00 3.41
5521 12254 8.999431 TGTTCACTTTTATATGACCTTGAAGAC 58.001 33.333 0.00 0.00 0.00 3.01
5522 12255 9.219603 CTGTTCACTTTTATATGACCTTGAAGA 57.780 33.333 0.00 0.00 0.00 2.87
5523 12256 9.219603 TCTGTTCACTTTTATATGACCTTGAAG 57.780 33.333 0.00 0.00 0.00 3.02
5524 12257 9.219603 CTCTGTTCACTTTTATATGACCTTGAA 57.780 33.333 0.00 0.00 0.00 2.69
5525 12258 8.593679 TCTCTGTTCACTTTTATATGACCTTGA 58.406 33.333 0.00 0.00 0.00 3.02
5526 12259 8.777865 TCTCTGTTCACTTTTATATGACCTTG 57.222 34.615 0.00 0.00 0.00 3.61
5527 12260 8.816894 TCTCTCTGTTCACTTTTATATGACCTT 58.183 33.333 0.00 0.00 0.00 3.50
5528 12261 8.367660 TCTCTCTGTTCACTTTTATATGACCT 57.632 34.615 0.00 0.00 0.00 3.85
5529 12262 8.254508 ACTCTCTCTGTTCACTTTTATATGACC 58.745 37.037 0.00 0.00 0.00 4.02
5532 12265 9.243637 GCTACTCTCTCTGTTCACTTTTATATG 57.756 37.037 0.00 0.00 0.00 1.78
5533 12266 9.196139 AGCTACTCTCTCTGTTCACTTTTATAT 57.804 33.333 0.00 0.00 0.00 0.86
5534 12267 8.582657 AGCTACTCTCTCTGTTCACTTTTATA 57.417 34.615 0.00 0.00 0.00 0.98
5535 12268 7.475137 AGCTACTCTCTCTGTTCACTTTTAT 57.525 36.000 0.00 0.00 0.00 1.40
5536 12269 6.902771 AGCTACTCTCTCTGTTCACTTTTA 57.097 37.500 0.00 0.00 0.00 1.52
5537 12270 5.799827 AGCTACTCTCTCTGTTCACTTTT 57.200 39.130 0.00 0.00 0.00 2.27
5538 12271 5.799827 AAGCTACTCTCTCTGTTCACTTT 57.200 39.130 0.00 0.00 0.00 2.66
5539 12272 7.475137 AATAAGCTACTCTCTCTGTTCACTT 57.525 36.000 0.00 0.00 0.00 3.16
5540 12273 8.582657 TTAATAAGCTACTCTCTCTGTTCACT 57.417 34.615 0.00 0.00 0.00 3.41
5541 12274 9.243637 CATTAATAAGCTACTCTCTCTGTTCAC 57.756 37.037 0.00 0.00 0.00 3.18
5542 12275 8.417106 CCATTAATAAGCTACTCTCTCTGTTCA 58.583 37.037 0.00 0.00 0.00 3.18
5543 12276 8.634444 TCCATTAATAAGCTACTCTCTCTGTTC 58.366 37.037 0.00 0.00 0.00 3.18
5544 12277 8.417884 GTCCATTAATAAGCTACTCTCTCTGTT 58.582 37.037 0.00 0.00 0.00 3.16
5545 12278 7.255312 CGTCCATTAATAAGCTACTCTCTCTGT 60.255 40.741 0.00 0.00 0.00 3.41
5546 12279 7.041030 TCGTCCATTAATAAGCTACTCTCTCTG 60.041 40.741 0.00 0.00 0.00 3.35
5547 12280 6.999272 TCGTCCATTAATAAGCTACTCTCTCT 59.001 38.462 0.00 0.00 0.00 3.10
5548 12281 7.173562 TCTCGTCCATTAATAAGCTACTCTCTC 59.826 40.741 0.00 0.00 0.00 3.20
5549 12282 6.999272 TCTCGTCCATTAATAAGCTACTCTCT 59.001 38.462 0.00 0.00 0.00 3.10
5550 12283 7.079475 GTCTCGTCCATTAATAAGCTACTCTC 58.921 42.308 0.00 0.00 0.00 3.20
5551 12284 6.546403 TGTCTCGTCCATTAATAAGCTACTCT 59.454 38.462 0.00 0.00 0.00 3.24
5552 12285 6.736123 TGTCTCGTCCATTAATAAGCTACTC 58.264 40.000 0.00 0.00 0.00 2.59
5553 12286 6.710597 TGTCTCGTCCATTAATAAGCTACT 57.289 37.500 0.00 0.00 0.00 2.57
5554 12287 7.145985 TCATGTCTCGTCCATTAATAAGCTAC 58.854 38.462 0.00 0.00 0.00 3.58
5555 12288 7.284919 TCATGTCTCGTCCATTAATAAGCTA 57.715 36.000 0.00 0.00 0.00 3.32
5556 12289 6.161855 TCATGTCTCGTCCATTAATAAGCT 57.838 37.500 0.00 0.00 0.00 3.74
5588 12321 2.820197 CCCCCTAAAAAGAGTTCTGCAC 59.180 50.000 0.00 0.00 0.00 4.57
5726 12460 7.553881 AATCAGTGTGTATACCATTTGCTAC 57.446 36.000 0.00 0.00 0.00 3.58
5789 12523 4.466015 TGTATGCCAGTATTCTGTCAGTCA 59.534 41.667 0.00 0.00 39.82 3.41
5790 12524 4.806247 GTGTATGCCAGTATTCTGTCAGTC 59.194 45.833 0.00 0.00 39.82 3.51
5814 12548 0.255318 ACGGAGAGGGACGTATCAGT 59.745 55.000 0.00 0.00 42.15 3.41
5890 12638 1.065418 GGAGCTCCCGAATTGGAAAGA 60.065 52.381 23.19 0.00 42.00 2.52
5926 12674 4.654262 CACATAGGGGTATCTTGTGGTAGT 59.346 45.833 0.00 0.00 35.25 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.