Multiple sequence alignment - TraesCS3B01G256700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G256700 chr3B 100.000 7869 0 0 1 7869 414027235 414019367 0.000000e+00 14532.0
1 TraesCS3B01G256700 chr3D 95.543 6058 167 52 7 6015 307226165 307232168 0.000000e+00 9596.0
2 TraesCS3B01G256700 chr3D 96.954 1346 35 4 6006 7346 307232243 307233587 0.000000e+00 2254.0
3 TraesCS3B01G256700 chr3D 93.789 161 10 0 7607 7767 307233601 307233761 7.890000e-60 243.0
4 TraesCS3B01G256700 chr3A 92.813 2588 124 31 129 2693 426873358 426870810 0.000000e+00 3692.0
5 TraesCS3B01G256700 chr3A 95.691 1578 59 8 3726 5299 426867689 426866117 0.000000e+00 2529.0
6 TraesCS3B01G256700 chr3A 96.870 1278 36 3 6120 7396 426865340 426864066 0.000000e+00 2135.0
7 TraesCS3B01G256700 chr3A 93.552 946 51 6 2787 3729 426870811 426869873 0.000000e+00 1400.0
8 TraesCS3B01G256700 chr3A 87.391 690 38 15 5337 6013 426866116 426865463 0.000000e+00 747.0
9 TraesCS3B01G256700 chr3A 95.031 161 8 0 7607 7767 426864075 426863915 3.640000e-63 254.0
10 TraesCS3B01G256700 chr3A 93.878 49 3 0 7821 7869 426863788 426863740 3.050000e-09 75.0
11 TraesCS3B01G256700 chr3A 92.683 41 3 0 6006 6046 426865386 426865346 8.530000e-05 60.2
12 TraesCS3B01G256700 chr1A 83.333 420 70 0 2082 2501 577469417 577469836 9.580000e-104 388.0
13 TraesCS3B01G256700 chr1A 77.670 309 48 16 3195 3499 577471079 577471370 1.360000e-37 169.0
14 TraesCS3B01G256700 chr1B 81.146 419 79 0 2082 2500 669158895 669159313 3.520000e-88 337.0
15 TraesCS3B01G256700 chr1B 79.288 309 43 17 3195 3499 669160210 669160501 6.230000e-46 196.0
16 TraesCS3B01G256700 chr1D 78.667 300 45 16 3204 3499 480890684 480890968 1.740000e-41 182.0
17 TraesCS3B01G256700 chr5B 91.000 100 9 0 2692 2791 705615822 705615723 1.380000e-27 135.0
18 TraesCS3B01G256700 chr2D 91.837 98 7 1 2695 2791 382456174 382456077 1.380000e-27 135.0
19 TraesCS3B01G256700 chr7B 87.387 111 10 4 7409 7517 458340919 458341027 2.980000e-24 124.0
20 TraesCS3B01G256700 chr4D 89.691 97 10 0 2692 2788 454429024 454429120 2.980000e-24 124.0
21 TraesCS3B01G256700 chr4D 90.698 86 8 0 2692 2777 26900814 26900899 1.790000e-21 115.0
22 TraesCS3B01G256700 chr5A 87.273 110 11 3 2681 2788 660796787 660796679 1.070000e-23 122.0
23 TraesCS3B01G256700 chr5A 88.119 101 12 0 2692 2792 9653194 9653294 3.860000e-23 121.0
24 TraesCS3B01G256700 chr7A 87.037 108 12 2 7409 7515 492238887 492238993 3.860000e-23 121.0
25 TraesCS3B01G256700 chr4A 87.379 103 13 0 2689 2791 609086844 609086946 1.390000e-22 119.0
26 TraesCS3B01G256700 chr6B 87.654 81 10 0 7412 7492 186702474 186702394 2.340000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G256700 chr3B 414019367 414027235 7868 True 14532.000 14532 100.000000 1 7869 1 chr3B.!!$R1 7868
1 TraesCS3B01G256700 chr3D 307226165 307233761 7596 False 4031.000 9596 95.428667 7 7767 3 chr3D.!!$F1 7760
2 TraesCS3B01G256700 chr3A 426863740 426873358 9618 True 1361.525 3692 93.488625 129 7869 8 chr3A.!!$R1 7740
3 TraesCS3B01G256700 chr1A 577469417 577471370 1953 False 278.500 388 80.501500 2082 3499 2 chr1A.!!$F1 1417
4 TraesCS3B01G256700 chr1B 669158895 669160501 1606 False 266.500 337 80.217000 2082 3499 2 chr1B.!!$F1 1417

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
975 1017 0.399806 GGGGGAGCTGAGGAGATTCT 60.400 60.000 0.00 0.0 0.00 2.40 F
1187 1229 0.034896 TCTGTCCGTTCAAGCCTTCC 59.965 55.000 0.00 0.0 0.00 3.46 F
1432 1475 0.038526 TCGGTCCTTCTCGCTTTCAC 60.039 55.000 0.00 0.0 0.00 3.18 F
1671 1714 0.241213 GCTTTTCTTGCGGGGTTCTC 59.759 55.000 0.00 0.0 0.00 2.87 F
2196 2247 0.457853 TCGTGTGCTCCGCAATAGAC 60.458 55.000 0.00 0.0 41.47 2.59 F
3758 6703 0.698238 TATGGGAGCACAGCACCTTT 59.302 50.000 5.49 0.0 39.22 3.11 F
4957 7906 3.592427 TGACTAGGACACTTCTCTACCCT 59.408 47.826 0.00 0.0 0.00 4.34 F
5852 8815 0.172803 CACGGCCTTACTAGCGTTCT 59.827 55.000 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2196 2247 0.388649 CTTTCTCTCCGGTGTGGACG 60.389 60.000 0.00 0.0 43.74 4.79 R
2710 3401 3.155093 AGTTCAAAGCTGCAACACTTG 57.845 42.857 1.02 0.0 0.00 3.16 R
2777 3485 4.528596 GCAGCTAATCTAATACTCCCTCCA 59.471 45.833 0.00 0.0 0.00 3.86 R
2967 3676 4.997395 ACAACACGCACTCTATGAAAGAAT 59.003 37.500 0.00 0.0 32.46 2.40 R
3838 6783 6.019152 CGATAAGGAAACAACAAACGTATGG 58.981 40.000 0.00 0.0 0.00 2.74 R
5117 8067 1.082104 GTTTTGAACTCCTGCCGCG 60.082 57.895 0.00 0.0 0.00 6.46 R
6522 9569 0.043637 TTGGGGAGGATAACCGGAGT 59.956 55.000 9.46 0.0 41.83 3.85 R
7559 10611 0.032678 CGAACGATCATCAGGGAGGG 59.967 60.000 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.319911 CCCTGAATTGGAGGAGAGTAATTTTC 59.680 42.308 2.15 0.00 31.48 2.29
29 30 8.940397 TGAATTGGAGGAGAGTAATTTTCTTT 57.060 30.769 0.00 0.00 0.00 2.52
30 31 8.796475 TGAATTGGAGGAGAGTAATTTTCTTTG 58.204 33.333 0.00 0.00 0.00 2.77
31 32 6.575162 TTGGAGGAGAGTAATTTTCTTTGC 57.425 37.500 0.00 0.00 0.00 3.68
34 35 4.010349 AGGAGAGTAATTTTCTTTGCGGG 58.990 43.478 0.00 0.00 0.00 6.13
35 36 4.007659 GGAGAGTAATTTTCTTTGCGGGA 58.992 43.478 0.00 0.00 0.00 5.14
36 37 4.457949 GGAGAGTAATTTTCTTTGCGGGAA 59.542 41.667 0.00 0.00 0.00 3.97
37 38 5.048294 GGAGAGTAATTTTCTTTGCGGGAAA 60.048 40.000 0.00 0.00 0.00 3.13
39 40 6.993079 AGAGTAATTTTCTTTGCGGGAAATT 58.007 32.000 0.00 7.81 33.51 1.82
40 41 8.117813 AGAGTAATTTTCTTTGCGGGAAATTA 57.882 30.769 0.00 6.37 33.51 1.40
41 42 8.581578 AGAGTAATTTTCTTTGCGGGAAATTAA 58.418 29.630 10.09 0.00 33.51 1.40
92 93 2.812499 GAGCTCCGCGGTTATCCA 59.188 61.111 27.15 2.82 0.00 3.41
109 110 6.434340 GGTTATCCACAGGAGAAAAGTTTCAT 59.566 38.462 6.56 0.00 34.57 2.57
143 156 6.365518 TCGTCTAGACTAGATAGTACGCAATG 59.634 42.308 20.34 0.00 36.50 2.82
144 157 6.401260 CGTCTAGACTAGATAGTACGCAATGG 60.401 46.154 20.34 0.00 36.50 3.16
171 184 8.593492 TGTCATGATATCGATTCCTAAAACAG 57.407 34.615 1.71 0.00 0.00 3.16
198 211 2.205074 CGGATAATGACACTGGCTCAC 58.795 52.381 0.00 0.00 0.00 3.51
217 230 1.002087 ACCGGAGCGAGAATTCAAACT 59.998 47.619 9.46 0.88 0.00 2.66
221 234 4.681942 CCGGAGCGAGAATTCAAACTATAG 59.318 45.833 8.44 0.00 0.00 1.31
259 275 1.821753 TGGAACCATAACAAATGGCCG 59.178 47.619 0.00 0.00 42.82 6.13
343 359 1.595093 GCCACCTCCATTTTCCCGTG 61.595 60.000 0.00 0.00 0.00 4.94
385 401 5.693555 GGTAGTAATCCACCGTATACAAAGC 59.306 44.000 3.32 0.00 0.00 3.51
386 402 5.347620 AGTAATCCACCGTATACAAAGCA 57.652 39.130 3.32 0.00 0.00 3.91
387 403 5.357257 AGTAATCCACCGTATACAAAGCAG 58.643 41.667 3.32 0.00 0.00 4.24
410 426 2.034124 AGGGCGCATCAGCATTAAATT 58.966 42.857 10.83 0.00 42.27 1.82
414 430 4.990426 GGGCGCATCAGCATTAAATTAAAT 59.010 37.500 10.83 0.00 42.27 1.40
415 431 5.466393 GGGCGCATCAGCATTAAATTAAATT 59.534 36.000 10.83 0.00 42.27 1.82
416 432 6.644592 GGGCGCATCAGCATTAAATTAAATTA 59.355 34.615 10.83 0.00 42.27 1.40
417 433 7.170658 GGGCGCATCAGCATTAAATTAAATTAA 59.829 33.333 10.83 0.00 42.27 1.40
418 434 8.547069 GGCGCATCAGCATTAAATTAAATTAAA 58.453 29.630 10.83 0.00 42.27 1.52
444 460 2.341101 GGGTCAGACGAGGCGAAGA 61.341 63.158 0.00 0.00 0.00 2.87
472 488 2.290641 GAGCAAACCTGAAGCGAGAAAA 59.709 45.455 0.00 0.00 0.00 2.29
473 489 2.887152 AGCAAACCTGAAGCGAGAAAAT 59.113 40.909 0.00 0.00 0.00 1.82
475 491 3.568538 CAAACCTGAAGCGAGAAAATGG 58.431 45.455 0.00 0.00 0.00 3.16
476 492 1.826385 ACCTGAAGCGAGAAAATGGG 58.174 50.000 0.00 0.00 0.00 4.00
540 564 2.683933 AGGGGCAATCTCGTCCGT 60.684 61.111 0.00 0.00 0.00 4.69
639 673 2.760385 CTCCACCCGTCCTCCTCC 60.760 72.222 0.00 0.00 0.00 4.30
640 674 3.273654 TCCACCCGTCCTCCTCCT 61.274 66.667 0.00 0.00 0.00 3.69
641 675 2.760385 CCACCCGTCCTCCTCCTC 60.760 72.222 0.00 0.00 0.00 3.71
652 686 1.852965 CCTCCTCCTCCTCTCTCTCTT 59.147 57.143 0.00 0.00 0.00 2.85
661 696 6.133356 TCCTCCTCTCTCTCTTTCTTATTCC 58.867 44.000 0.00 0.00 0.00 3.01
666 701 4.890581 TCTCTCTCTTTCTTATTCCCCTCG 59.109 45.833 0.00 0.00 0.00 4.63
709 744 0.689412 GAGGAGGAGGAGGAACAGGG 60.689 65.000 0.00 0.00 0.00 4.45
710 745 1.156322 AGGAGGAGGAGGAACAGGGA 61.156 60.000 0.00 0.00 0.00 4.20
711 746 0.689412 GGAGGAGGAGGAACAGGGAG 60.689 65.000 0.00 0.00 0.00 4.30
809 850 3.186730 TCGCCTCGTCTCGTCTCG 61.187 66.667 0.00 0.00 0.00 4.04
810 851 3.488978 CGCCTCGTCTCGTCTCGT 61.489 66.667 0.00 0.00 0.00 4.18
811 852 2.400402 GCCTCGTCTCGTCTCGTC 59.600 66.667 0.00 0.00 0.00 4.20
812 853 2.101835 GCCTCGTCTCGTCTCGTCT 61.102 63.158 0.00 0.00 0.00 4.18
813 854 2.000587 CCTCGTCTCGTCTCGTCTC 58.999 63.158 0.00 0.00 0.00 3.36
906 947 1.660575 CGTGTGTCTGACCGTGTCC 60.661 63.158 5.17 0.00 0.00 4.02
931 972 3.670377 GGCGGGCTTGGTGTTGTC 61.670 66.667 0.00 0.00 0.00 3.18
936 977 1.299089 GGCTTGGTGTTGTCGTTGC 60.299 57.895 0.00 0.00 0.00 4.17
939 980 2.982038 CTTGGTGTTGTCGTTGCCGC 62.982 60.000 0.00 0.00 0.00 6.53
940 981 4.322385 GGTGTTGTCGTTGCCGCC 62.322 66.667 0.00 0.00 0.00 6.13
941 982 4.322385 GTGTTGTCGTTGCCGCCC 62.322 66.667 0.00 0.00 0.00 6.13
942 983 4.555709 TGTTGTCGTTGCCGCCCT 62.556 61.111 0.00 0.00 0.00 5.19
943 984 3.284449 GTTGTCGTTGCCGCCCTT 61.284 61.111 0.00 0.00 0.00 3.95
944 985 1.962306 GTTGTCGTTGCCGCCCTTA 60.962 57.895 0.00 0.00 0.00 2.69
975 1017 0.399806 GGGGGAGCTGAGGAGATTCT 60.400 60.000 0.00 0.00 0.00 2.40
1026 1068 0.107945 AGGATCAGCGCAAGAAGGTC 60.108 55.000 11.47 1.73 43.02 3.85
1058 1100 4.530875 CCAGAGATCCCTAGCATTTTTGT 58.469 43.478 0.00 0.00 0.00 2.83
1060 1102 3.950395 AGAGATCCCTAGCATTTTTGTGC 59.050 43.478 0.00 0.00 45.38 4.57
1081 1123 1.749258 GTGAATTCCGCCCCAGTCC 60.749 63.158 2.27 0.00 0.00 3.85
1114 1156 4.454319 CTGAGCTGCTCCTGCGCT 62.454 66.667 25.61 6.96 45.92 5.92
1116 1158 3.194308 GAGCTGCTCCTGCGCTTC 61.194 66.667 18.80 0.00 44.35 3.86
1117 1159 4.774503 AGCTGCTCCTGCGCTTCC 62.775 66.667 9.73 0.00 42.81 3.46
1124 1166 1.135660 GCTCCTGCGCTTCCTTTTTAC 60.136 52.381 9.73 0.00 0.00 2.01
1187 1229 0.034896 TCTGTCCGTTCAAGCCTTCC 59.965 55.000 0.00 0.00 0.00 3.46
1223 1265 2.612212 TCGGCACAGTTTCTTGTTTCTC 59.388 45.455 0.00 0.00 0.00 2.87
1308 1350 2.094258 CGTGTCAATCCGGATGTTTGAG 59.906 50.000 19.95 5.25 34.24 3.02
1366 1408 2.606272 CAGTATTTTCGTTAGCCGTCCC 59.394 50.000 0.00 0.00 37.94 4.46
1432 1475 0.038526 TCGGTCCTTCTCGCTTTCAC 60.039 55.000 0.00 0.00 0.00 3.18
1459 1502 1.153588 CCCATGCATTTTCCGCACC 60.154 57.895 0.00 0.00 43.35 5.01
1511 1554 7.001073 GCAGTCTTCCTTCTATATTTGGGAAT 58.999 38.462 0.00 0.00 35.82 3.01
1537 1580 3.380320 GGTGTAATTTGGCGCTCCTTTAT 59.620 43.478 7.64 0.00 0.00 1.40
1540 1583 5.969435 GTGTAATTTGGCGCTCCTTTATTAC 59.031 40.000 7.64 12.83 34.68 1.89
1541 1584 5.883673 TGTAATTTGGCGCTCCTTTATTACT 59.116 36.000 7.64 0.00 34.89 2.24
1543 1586 7.717875 TGTAATTTGGCGCTCCTTTATTACTAT 59.282 33.333 7.64 0.00 34.89 2.12
1671 1714 0.241213 GCTTTTCTTGCGGGGTTCTC 59.759 55.000 0.00 0.00 0.00 2.87
1672 1715 1.897560 CTTTTCTTGCGGGGTTCTCT 58.102 50.000 0.00 0.00 0.00 3.10
1673 1716 2.230660 CTTTTCTTGCGGGGTTCTCTT 58.769 47.619 0.00 0.00 0.00 2.85
1674 1717 1.892209 TTTCTTGCGGGGTTCTCTTC 58.108 50.000 0.00 0.00 0.00 2.87
1675 1718 1.056660 TTCTTGCGGGGTTCTCTTCT 58.943 50.000 0.00 0.00 0.00 2.85
1676 1719 0.608640 TCTTGCGGGGTTCTCTTCTC 59.391 55.000 0.00 0.00 0.00 2.87
1732 1781 1.718361 CGCGTGTCACGATTTCAGTTG 60.718 52.381 28.83 2.66 46.05 3.16
1737 1786 0.512518 TCACGATTTCAGTTGCGCAG 59.487 50.000 11.31 0.00 0.00 5.18
1802 1852 6.058833 TCTACCTGCACAACAGTTGAATTTA 58.941 36.000 20.56 2.83 45.68 1.40
1885 1935 8.207545 GTCCATTAAAAGTATCTGGAGATCTGT 58.792 37.037 0.00 0.00 36.71 3.41
2014 2065 2.890808 TCACTCAAGCTTCTTGTCGT 57.109 45.000 0.00 3.37 0.00 4.34
2042 2093 0.598562 TCTGACGAGCTTCCAGTGAC 59.401 55.000 9.69 0.00 0.00 3.67
2065 2116 7.802720 TGACAGATTTGTGAAATGTATTTGACG 59.197 33.333 0.00 0.00 36.81 4.35
2103 2154 2.125350 CAGAGTTCCGCAGAGGCC 60.125 66.667 0.00 0.00 40.77 5.19
2196 2247 0.457853 TCGTGTGCTCCGCAATAGAC 60.458 55.000 0.00 0.00 41.47 2.59
2552 2697 2.531522 TCATATGTCGCAGGACCATG 57.468 50.000 1.90 0.00 42.73 3.66
2710 3401 6.831976 ACATATACTCCCTCTGATCCAAAAC 58.168 40.000 0.00 0.00 0.00 2.43
2765 3473 2.096218 CCTTAGTTCAAAGCTGCGACAC 60.096 50.000 0.00 0.00 0.00 3.67
2800 3508 4.528596 TGGAGGGAGTATTAGATTAGCTGC 59.471 45.833 0.00 0.00 0.00 5.25
2806 3514 5.862860 GGAGTATTAGATTAGCTGCGGTTAC 59.137 44.000 0.00 0.00 0.00 2.50
2821 3529 3.871594 GCGGTTACTGAGTTCATAGCAAT 59.128 43.478 0.00 0.00 0.00 3.56
2992 3701 5.534407 TCTTTCATAGAGTGCGTGTTGTTA 58.466 37.500 0.00 0.00 0.00 2.41
3341 4099 5.413213 CCACAACAATCTTTTGGACGGTATA 59.587 40.000 0.00 0.00 37.15 1.47
3342 4100 6.094881 CCACAACAATCTTTTGGACGGTATAT 59.905 38.462 0.00 0.00 37.15 0.86
3758 6703 0.698238 TATGGGAGCACAGCACCTTT 59.302 50.000 5.49 0.00 39.22 3.11
3838 6783 4.015872 TGACTTTCCCCACTGTCATAAC 57.984 45.455 0.00 0.00 34.94 1.89
3916 6861 7.497249 AGCATGAAGTTACTCCATTTCTATGTC 59.503 37.037 0.00 0.00 0.00 3.06
4924 7873 7.874940 TGACCTTTGTTTTCATTGTATCTCTG 58.125 34.615 0.00 0.00 0.00 3.35
4956 7905 3.949113 CTGACTAGGACACTTCTCTACCC 59.051 52.174 0.00 0.00 0.00 3.69
4957 7906 3.592427 TGACTAGGACACTTCTCTACCCT 59.408 47.826 0.00 0.00 0.00 4.34
5418 8368 1.167851 ATGAGCCAATGTTGACGTGG 58.832 50.000 0.00 0.00 0.00 4.94
5419 8369 0.179032 TGAGCCAATGTTGACGTGGT 60.179 50.000 0.00 0.00 0.00 4.16
5420 8370 0.238289 GAGCCAATGTTGACGTGGTG 59.762 55.000 0.00 0.00 0.00 4.17
5421 8371 1.172180 AGCCAATGTTGACGTGGTGG 61.172 55.000 0.00 0.00 0.00 4.61
5480 8430 5.478407 GCTAGAGCTGGGCAAAAATTAAAA 58.522 37.500 0.00 0.00 38.21 1.52
5565 8515 4.431809 TGGTGCAGTCAAATTCAGTTTTG 58.568 39.130 0.00 0.00 37.83 2.44
5716 8673 1.170442 CTGCATGCCATGAACAGTCA 58.830 50.000 16.68 0.00 38.41 3.41
5824 8787 4.408821 GATCCCTGGCACACCGCA 62.409 66.667 0.00 0.00 45.17 5.69
5852 8815 0.172803 CACGGCCTTACTAGCGTTCT 59.827 55.000 0.00 0.00 0.00 3.01
5893 8856 5.348164 GCCGCTGTTGTAAAATCCATATTT 58.652 37.500 0.00 0.00 36.87 1.40
5991 8954 8.685838 ACTAAACAGTTCCTAACAAAATAGCA 57.314 30.769 0.00 0.00 0.00 3.49
6087 9134 5.683876 ACCTGATAGTTGATTAGTGCACT 57.316 39.130 25.12 25.12 0.00 4.40
6138 9185 3.844211 AGTCTACCTGGCTGGACATTTAA 59.156 43.478 18.12 0.00 39.71 1.52
6146 9193 3.831333 TGGCTGGACATTTAATTCTTGCA 59.169 39.130 0.00 0.00 0.00 4.08
6503 9550 5.503927 GCATGAAGGATACATATGACCCAT 58.496 41.667 10.38 6.91 41.41 4.00
6522 9569 2.275134 TGAAGAGTGGCAGCAATGAA 57.725 45.000 0.00 0.00 0.00 2.57
6526 9573 0.807496 GAGTGGCAGCAATGAACTCC 59.193 55.000 0.00 0.00 32.82 3.85
6544 9591 0.621609 CCGGTTATCCTCCCCAACAA 59.378 55.000 0.00 0.00 0.00 2.83
6787 9834 4.160329 ACTCGAGATCCCTTAATGGCATA 58.840 43.478 21.68 0.00 0.00 3.14
6970 10017 4.380945 GCTTGGGTGGGGATGCCA 62.381 66.667 5.30 0.00 0.00 4.92
7014 10066 2.099405 CCGGGGTTTGATGCTTATGTT 58.901 47.619 0.00 0.00 0.00 2.71
7206 10258 2.422479 GGAAGGAATGCTAACCCGTTTC 59.578 50.000 0.00 0.00 0.00 2.78
7309 10361 4.270008 GTGATAATTGCCACCAGGTAGTT 58.730 43.478 0.00 0.00 37.19 2.24
7320 10372 2.979678 ACCAGGTAGTTGAATCAGTGGT 59.020 45.455 0.00 0.00 32.09 4.16
7321 10373 3.008049 ACCAGGTAGTTGAATCAGTGGTC 59.992 47.826 0.00 0.00 31.23 4.02
7322 10374 3.007940 CCAGGTAGTTGAATCAGTGGTCA 59.992 47.826 0.00 0.00 0.00 4.02
7324 10376 3.008049 AGGTAGTTGAATCAGTGGTCACC 59.992 47.826 0.00 0.00 0.00 4.02
7336 10388 3.316868 CAGTGGTCACCGGTTTTAAACAT 59.683 43.478 2.97 0.00 0.00 2.71
7368 10420 3.703052 AGATGATCATTTCCTGTTTGCCC 59.297 43.478 10.14 0.00 0.00 5.36
7394 10446 2.262572 GCGAAACGGCAATTTCATCT 57.737 45.000 11.23 0.00 38.30 2.90
7395 10447 2.595386 GCGAAACGGCAATTTCATCTT 58.405 42.857 11.23 0.00 38.30 2.40
7396 10448 2.594214 GCGAAACGGCAATTTCATCTTC 59.406 45.455 11.23 0.00 38.30 2.87
7397 10449 2.840176 CGAAACGGCAATTTCATCTTCG 59.160 45.455 11.23 0.00 38.30 3.79
7398 10450 2.919666 AACGGCAATTTCATCTTCGG 57.080 45.000 0.00 0.00 0.00 4.30
7399 10451 2.107950 ACGGCAATTTCATCTTCGGA 57.892 45.000 0.00 0.00 0.00 4.55
7400 10452 2.009774 ACGGCAATTTCATCTTCGGAG 58.990 47.619 0.00 0.00 0.00 4.63
7401 10453 1.268234 CGGCAATTTCATCTTCGGAGC 60.268 52.381 0.00 0.00 0.00 4.70
7402 10454 1.745087 GGCAATTTCATCTTCGGAGCA 59.255 47.619 0.00 0.00 0.00 4.26
7403 10455 2.164219 GGCAATTTCATCTTCGGAGCAA 59.836 45.455 0.00 0.00 0.00 3.91
7404 10456 3.367292 GGCAATTTCATCTTCGGAGCAAA 60.367 43.478 0.00 0.00 0.00 3.68
7405 10457 4.427312 GCAATTTCATCTTCGGAGCAAAT 58.573 39.130 0.00 0.00 0.00 2.32
7406 10458 4.501921 GCAATTTCATCTTCGGAGCAAATC 59.498 41.667 0.00 0.00 0.00 2.17
7407 10459 5.643664 CAATTTCATCTTCGGAGCAAATCA 58.356 37.500 0.00 0.00 0.00 2.57
7408 10460 4.685169 TTTCATCTTCGGAGCAAATCAC 57.315 40.909 0.00 0.00 0.00 3.06
7409 10461 3.333029 TCATCTTCGGAGCAAATCACA 57.667 42.857 0.00 0.00 0.00 3.58
7410 10462 3.877559 TCATCTTCGGAGCAAATCACAT 58.122 40.909 0.00 0.00 0.00 3.21
7411 10463 4.264253 TCATCTTCGGAGCAAATCACATT 58.736 39.130 0.00 0.00 0.00 2.71
7412 10464 4.701651 TCATCTTCGGAGCAAATCACATTT 59.298 37.500 0.00 0.00 0.00 2.32
7427 10479 7.414222 AATCACATTTGATGGCAATTCTACT 57.586 32.000 0.00 0.00 42.00 2.57
7428 10480 6.839124 TCACATTTGATGGCAATTCTACTT 57.161 33.333 0.00 0.00 33.25 2.24
7429 10481 6.623486 TCACATTTGATGGCAATTCTACTTG 58.377 36.000 0.00 0.00 33.25 3.16
7430 10482 6.209192 TCACATTTGATGGCAATTCTACTTGT 59.791 34.615 0.00 0.00 33.25 3.16
7431 10483 6.309494 CACATTTGATGGCAATTCTACTTGTG 59.691 38.462 0.00 0.00 33.25 3.33
7432 10484 6.209192 ACATTTGATGGCAATTCTACTTGTGA 59.791 34.615 0.00 0.00 33.25 3.58
7433 10485 6.647334 TTTGATGGCAATTCTACTTGTGAA 57.353 33.333 0.00 0.00 33.25 3.18
7434 10486 6.647334 TTGATGGCAATTCTACTTGTGAAA 57.353 33.333 0.00 0.00 0.00 2.69
7435 10487 6.647334 TGATGGCAATTCTACTTGTGAAAA 57.353 33.333 0.00 0.00 0.00 2.29
7436 10488 7.230849 TGATGGCAATTCTACTTGTGAAAAT 57.769 32.000 0.00 0.00 0.00 1.82
7437 10489 8.347004 TGATGGCAATTCTACTTGTGAAAATA 57.653 30.769 0.00 0.00 0.00 1.40
7438 10490 8.801299 TGATGGCAATTCTACTTGTGAAAATAA 58.199 29.630 0.00 0.00 0.00 1.40
7439 10491 9.638239 GATGGCAATTCTACTTGTGAAAATAAA 57.362 29.630 0.00 0.00 0.00 1.40
7441 10493 9.638239 TGGCAATTCTACTTGTGAAAATAAATC 57.362 29.630 0.00 0.00 0.00 2.17
7442 10494 9.638239 GGCAATTCTACTTGTGAAAATAAATCA 57.362 29.630 0.00 0.00 0.00 2.57
7448 10500 9.872757 TCTACTTGTGAAAATAAATCAAACGAC 57.127 29.630 0.00 0.00 0.00 4.34
7449 10501 7.603297 ACTTGTGAAAATAAATCAAACGACG 57.397 32.000 0.00 0.00 0.00 5.12
7450 10502 6.635239 ACTTGTGAAAATAAATCAAACGACGG 59.365 34.615 0.00 0.00 0.00 4.79
7451 10503 4.912766 TGTGAAAATAAATCAAACGACGGC 59.087 37.500 0.00 0.00 0.00 5.68
7452 10504 4.912766 GTGAAAATAAATCAAACGACGGCA 59.087 37.500 0.00 0.00 0.00 5.69
7453 10505 5.059221 GTGAAAATAAATCAAACGACGGCAG 59.941 40.000 0.00 0.00 0.00 4.85
7454 10506 4.759516 AAATAAATCAAACGACGGCAGT 57.240 36.364 0.00 0.00 0.00 4.40
7455 10507 4.759516 AATAAATCAAACGACGGCAGTT 57.240 36.364 0.00 0.00 0.00 3.16
7456 10508 4.759516 ATAAATCAAACGACGGCAGTTT 57.240 36.364 5.56 5.56 41.90 2.66
7457 10509 3.430333 AAATCAAACGACGGCAGTTTT 57.570 38.095 8.23 0.00 39.50 2.43
7458 10510 3.430333 AATCAAACGACGGCAGTTTTT 57.570 38.095 8.23 0.59 39.50 1.94
7459 10511 4.555348 AATCAAACGACGGCAGTTTTTA 57.445 36.364 8.23 1.99 39.50 1.52
7460 10512 4.555348 ATCAAACGACGGCAGTTTTTAA 57.445 36.364 8.23 0.00 39.50 1.52
7461 10513 4.352600 TCAAACGACGGCAGTTTTTAAA 57.647 36.364 8.23 0.00 39.50 1.52
7462 10514 4.922719 TCAAACGACGGCAGTTTTTAAAT 58.077 34.783 8.23 0.00 39.50 1.40
7463 10515 4.735822 TCAAACGACGGCAGTTTTTAAATG 59.264 37.500 8.23 0.00 39.50 2.32
7464 10516 4.555348 AACGACGGCAGTTTTTAAATGA 57.445 36.364 0.00 0.00 0.00 2.57
7465 10517 4.555348 ACGACGGCAGTTTTTAAATGAA 57.445 36.364 0.00 0.00 0.00 2.57
7466 10518 4.922719 ACGACGGCAGTTTTTAAATGAAA 58.077 34.783 0.00 0.00 0.00 2.69
7467 10519 5.341617 ACGACGGCAGTTTTTAAATGAAAA 58.658 33.333 0.00 0.00 35.16 2.29
7468 10520 5.980715 ACGACGGCAGTTTTTAAATGAAAAT 59.019 32.000 0.00 0.00 36.89 1.82
7469 10521 6.477360 ACGACGGCAGTTTTTAAATGAAAATT 59.523 30.769 0.00 0.00 36.89 1.82
7470 10522 6.785164 CGACGGCAGTTTTTAAATGAAAATTG 59.215 34.615 0.00 2.79 38.49 2.32
7471 10523 7.515998 CGACGGCAGTTTTTAAATGAAAATTGT 60.516 33.333 0.00 0.00 38.05 2.71
7472 10524 7.626446 ACGGCAGTTTTTAAATGAAAATTGTC 58.374 30.769 7.41 4.80 38.05 3.18
7473 10525 7.494298 ACGGCAGTTTTTAAATGAAAATTGTCT 59.506 29.630 8.21 0.00 38.15 3.41
7474 10526 8.334632 CGGCAGTTTTTAAATGAAAATTGTCTT 58.665 29.630 8.21 0.00 38.15 3.01
7475 10527 9.650371 GGCAGTTTTTAAATGAAAATTGTCTTC 57.350 29.630 0.00 0.00 37.65 2.87
7486 10538 9.741647 AATGAAAATTGTCTTCTCTGAAGAAAC 57.258 29.630 11.03 2.71 40.95 2.78
7487 10539 8.511604 TGAAAATTGTCTTCTCTGAAGAAACT 57.488 30.769 11.03 0.00 40.95 2.66
7488 10540 8.400947 TGAAAATTGTCTTCTCTGAAGAAACTG 58.599 33.333 11.03 0.00 40.95 3.16
7489 10541 5.938438 ATTGTCTTCTCTGAAGAAACTGC 57.062 39.130 11.03 0.97 40.95 4.40
7490 10542 3.733337 TGTCTTCTCTGAAGAAACTGCC 58.267 45.455 11.03 0.36 40.95 4.85
7491 10543 3.134623 TGTCTTCTCTGAAGAAACTGCCA 59.865 43.478 11.03 2.67 40.95 4.92
7492 10544 4.202398 TGTCTTCTCTGAAGAAACTGCCAT 60.202 41.667 11.03 0.00 40.95 4.40
7493 10545 4.153835 GTCTTCTCTGAAGAAACTGCCATG 59.846 45.833 11.03 0.00 40.95 3.66
7494 10546 3.777106 TCTCTGAAGAAACTGCCATGT 57.223 42.857 0.00 0.00 0.00 3.21
7495 10547 3.668447 TCTCTGAAGAAACTGCCATGTC 58.332 45.455 0.00 0.00 0.00 3.06
7496 10548 2.414481 CTCTGAAGAAACTGCCATGTCG 59.586 50.000 0.00 0.00 0.00 4.35
7497 10549 0.874390 TGAAGAAACTGCCATGTCGC 59.126 50.000 0.00 0.00 0.00 5.19
7498 10550 1.160137 GAAGAAACTGCCATGTCGCT 58.840 50.000 0.00 0.00 0.00 4.93
7499 10551 2.289382 TGAAGAAACTGCCATGTCGCTA 60.289 45.455 0.00 0.00 0.00 4.26
7500 10552 2.698855 AGAAACTGCCATGTCGCTAT 57.301 45.000 0.00 0.00 0.00 2.97
7501 10553 2.283298 AGAAACTGCCATGTCGCTATG 58.717 47.619 0.00 0.00 0.00 2.23
7502 10554 2.093500 AGAAACTGCCATGTCGCTATGA 60.093 45.455 0.00 0.00 0.00 2.15
7503 10555 2.401583 AACTGCCATGTCGCTATGAA 57.598 45.000 0.00 0.00 0.00 2.57
7504 10556 1.945387 ACTGCCATGTCGCTATGAAG 58.055 50.000 0.00 1.75 0.00 3.02
7505 10557 1.482182 ACTGCCATGTCGCTATGAAGA 59.518 47.619 0.00 0.00 0.00 2.87
7506 10558 2.093500 ACTGCCATGTCGCTATGAAGAA 60.093 45.455 0.00 0.00 0.00 2.52
7507 10559 2.938451 CTGCCATGTCGCTATGAAGAAA 59.062 45.455 0.00 0.00 0.00 2.52
7508 10560 3.342719 TGCCATGTCGCTATGAAGAAAA 58.657 40.909 0.00 0.00 0.00 2.29
7509 10561 3.947196 TGCCATGTCGCTATGAAGAAAAT 59.053 39.130 0.00 0.00 0.00 1.82
7510 10562 4.201940 TGCCATGTCGCTATGAAGAAAATG 60.202 41.667 0.00 0.00 0.00 2.32
7511 10563 4.285292 CCATGTCGCTATGAAGAAAATGC 58.715 43.478 0.00 0.00 0.00 3.56
7512 10564 4.285292 CATGTCGCTATGAAGAAAATGCC 58.715 43.478 0.00 0.00 0.00 4.40
7513 10565 3.342719 TGTCGCTATGAAGAAAATGCCA 58.657 40.909 0.00 0.00 0.00 4.92
7514 10566 3.126858 TGTCGCTATGAAGAAAATGCCAC 59.873 43.478 0.00 0.00 0.00 5.01
7515 10567 2.682856 TCGCTATGAAGAAAATGCCACC 59.317 45.455 0.00 0.00 0.00 4.61
7516 10568 2.223572 CGCTATGAAGAAAATGCCACCC 60.224 50.000 0.00 0.00 0.00 4.61
7517 10569 2.101415 GCTATGAAGAAAATGCCACCCC 59.899 50.000 0.00 0.00 0.00 4.95
7518 10570 1.571955 ATGAAGAAAATGCCACCCCC 58.428 50.000 0.00 0.00 0.00 5.40
7519 10571 0.486879 TGAAGAAAATGCCACCCCCT 59.513 50.000 0.00 0.00 0.00 4.79
7520 10572 0.897621 GAAGAAAATGCCACCCCCTG 59.102 55.000 0.00 0.00 0.00 4.45
7521 10573 0.486879 AAGAAAATGCCACCCCCTGA 59.513 50.000 0.00 0.00 0.00 3.86
7522 10574 0.040204 AGAAAATGCCACCCCCTGAG 59.960 55.000 0.00 0.00 0.00 3.35
7523 10575 0.039618 GAAAATGCCACCCCCTGAGA 59.960 55.000 0.00 0.00 0.00 3.27
7524 10576 0.486879 AAAATGCCACCCCCTGAGAA 59.513 50.000 0.00 0.00 0.00 2.87
7525 10577 0.251787 AAATGCCACCCCCTGAGAAC 60.252 55.000 0.00 0.00 0.00 3.01
7526 10578 1.142688 AATGCCACCCCCTGAGAACT 61.143 55.000 0.00 0.00 0.00 3.01
7527 10579 0.253160 ATGCCACCCCCTGAGAACTA 60.253 55.000 0.00 0.00 0.00 2.24
7528 10580 0.474854 TGCCACCCCCTGAGAACTAA 60.475 55.000 0.00 0.00 0.00 2.24
7529 10581 0.696501 GCCACCCCCTGAGAACTAAA 59.303 55.000 0.00 0.00 0.00 1.85
7530 10582 1.074889 GCCACCCCCTGAGAACTAAAA 59.925 52.381 0.00 0.00 0.00 1.52
7531 10583 2.490168 GCCACCCCCTGAGAACTAAAAA 60.490 50.000 0.00 0.00 0.00 1.94
7532 10584 3.817931 GCCACCCCCTGAGAACTAAAAAT 60.818 47.826 0.00 0.00 0.00 1.82
7533 10585 4.416516 CCACCCCCTGAGAACTAAAAATT 58.583 43.478 0.00 0.00 0.00 1.82
7534 10586 4.462834 CCACCCCCTGAGAACTAAAAATTC 59.537 45.833 0.00 0.00 0.00 2.17
7535 10587 4.462834 CACCCCCTGAGAACTAAAAATTCC 59.537 45.833 0.00 0.00 0.00 3.01
7536 10588 4.107311 ACCCCCTGAGAACTAAAAATTCCA 59.893 41.667 0.00 0.00 0.00 3.53
7537 10589 5.222547 ACCCCCTGAGAACTAAAAATTCCAT 60.223 40.000 0.00 0.00 0.00 3.41
7538 10590 6.011096 ACCCCCTGAGAACTAAAAATTCCATA 60.011 38.462 0.00 0.00 0.00 2.74
7539 10591 6.895204 CCCCCTGAGAACTAAAAATTCCATAA 59.105 38.462 0.00 0.00 0.00 1.90
7540 10592 7.398904 CCCCCTGAGAACTAAAAATTCCATAAA 59.601 37.037 0.00 0.00 0.00 1.40
7541 10593 8.811994 CCCCTGAGAACTAAAAATTCCATAAAA 58.188 33.333 0.00 0.00 0.00 1.52
7561 10613 2.330041 CGTTTGCGTGTTCCACCC 59.670 61.111 0.00 0.00 0.00 4.61
7562 10614 2.184167 CGTTTGCGTGTTCCACCCT 61.184 57.895 0.00 0.00 0.00 4.34
7563 10615 1.652563 GTTTGCGTGTTCCACCCTC 59.347 57.895 0.00 0.00 0.00 4.30
7564 10616 1.527380 TTTGCGTGTTCCACCCTCC 60.527 57.895 0.00 0.00 0.00 4.30
7565 10617 2.969300 TTTGCGTGTTCCACCCTCCC 62.969 60.000 0.00 0.00 0.00 4.30
7566 10618 3.637273 GCGTGTTCCACCCTCCCT 61.637 66.667 0.00 0.00 0.00 4.20
7567 10619 2.347490 CGTGTTCCACCCTCCCTG 59.653 66.667 0.00 0.00 0.00 4.45
7568 10620 2.214216 CGTGTTCCACCCTCCCTGA 61.214 63.158 0.00 0.00 0.00 3.86
7569 10621 1.553690 CGTGTTCCACCCTCCCTGAT 61.554 60.000 0.00 0.00 0.00 2.90
7570 10622 0.035056 GTGTTCCACCCTCCCTGATG 60.035 60.000 0.00 0.00 0.00 3.07
7571 10623 0.178876 TGTTCCACCCTCCCTGATGA 60.179 55.000 0.00 0.00 0.00 2.92
7572 10624 1.216990 GTTCCACCCTCCCTGATGAT 58.783 55.000 0.00 0.00 0.00 2.45
7573 10625 1.141858 GTTCCACCCTCCCTGATGATC 59.858 57.143 0.00 0.00 0.00 2.92
7574 10626 0.760567 TCCACCCTCCCTGATGATCG 60.761 60.000 0.00 0.00 0.00 3.69
7575 10627 1.050988 CCACCCTCCCTGATGATCGT 61.051 60.000 0.00 0.00 0.00 3.73
7576 10628 0.833287 CACCCTCCCTGATGATCGTT 59.167 55.000 0.00 0.00 0.00 3.85
7577 10629 1.123928 ACCCTCCCTGATGATCGTTC 58.876 55.000 0.00 0.00 0.00 3.95
7578 10630 0.032678 CCCTCCCTGATGATCGTTCG 59.967 60.000 0.00 0.00 0.00 3.95
7579 10631 0.747255 CCTCCCTGATGATCGTTCGT 59.253 55.000 0.00 0.00 0.00 3.85
7580 10632 1.137086 CCTCCCTGATGATCGTTCGTT 59.863 52.381 0.00 0.00 0.00 3.85
7581 10633 2.464865 CTCCCTGATGATCGTTCGTTC 58.535 52.381 0.00 0.00 0.00 3.95
7582 10634 2.099921 CTCCCTGATGATCGTTCGTTCT 59.900 50.000 0.00 0.00 0.00 3.01
7583 10635 2.099263 TCCCTGATGATCGTTCGTTCTC 59.901 50.000 0.00 2.21 0.00 2.87
7584 10636 2.464865 CCTGATGATCGTTCGTTCTCC 58.535 52.381 0.00 0.00 0.00 3.71
7585 10637 2.159240 CCTGATGATCGTTCGTTCTCCA 60.159 50.000 0.00 2.99 0.00 3.86
7586 10638 3.111838 CTGATGATCGTTCGTTCTCCAG 58.888 50.000 0.00 7.51 0.00 3.86
7587 10639 2.492088 TGATGATCGTTCGTTCTCCAGT 59.508 45.455 0.00 0.00 0.00 4.00
7588 10640 3.056821 TGATGATCGTTCGTTCTCCAGTT 60.057 43.478 0.00 0.00 0.00 3.16
7589 10641 2.942710 TGATCGTTCGTTCTCCAGTTC 58.057 47.619 5.19 0.00 0.00 3.01
7590 10642 1.912110 GATCGTTCGTTCTCCAGTTCG 59.088 52.381 0.00 0.00 0.00 3.95
7591 10643 0.662374 TCGTTCGTTCTCCAGTTCGC 60.662 55.000 0.00 0.00 0.00 4.70
7592 10644 1.615107 CGTTCGTTCTCCAGTTCGCC 61.615 60.000 0.00 0.00 0.00 5.54
7593 10645 0.599204 GTTCGTTCTCCAGTTCGCCA 60.599 55.000 0.00 0.00 0.00 5.69
7594 10646 0.319555 TTCGTTCTCCAGTTCGCCAG 60.320 55.000 0.00 0.00 0.00 4.85
7595 10647 1.006102 CGTTCTCCAGTTCGCCAGT 60.006 57.895 0.00 0.00 0.00 4.00
7596 10648 0.600255 CGTTCTCCAGTTCGCCAGTT 60.600 55.000 0.00 0.00 0.00 3.16
7597 10649 1.336517 CGTTCTCCAGTTCGCCAGTTA 60.337 52.381 0.00 0.00 0.00 2.24
7598 10650 2.674177 CGTTCTCCAGTTCGCCAGTTAT 60.674 50.000 0.00 0.00 0.00 1.89
7599 10651 2.672961 TCTCCAGTTCGCCAGTTATG 57.327 50.000 0.00 0.00 0.00 1.90
7600 10652 2.176045 TCTCCAGTTCGCCAGTTATGA 58.824 47.619 0.00 0.00 0.00 2.15
7601 10653 2.166459 TCTCCAGTTCGCCAGTTATGAG 59.834 50.000 0.00 0.00 0.00 2.90
7602 10654 1.009829 CCAGTTCGCCAGTTATGAGC 58.990 55.000 0.00 0.00 0.00 4.26
7603 10655 0.647410 CAGTTCGCCAGTTATGAGCG 59.353 55.000 0.00 0.00 43.25 5.03
7604 10656 0.246635 AGTTCGCCAGTTATGAGCGT 59.753 50.000 3.39 0.00 42.78 5.07
7605 10657 0.645868 GTTCGCCAGTTATGAGCGTC 59.354 55.000 3.39 0.00 42.78 5.19
7609 10661 1.258982 CGCCAGTTATGAGCGTCATTC 59.741 52.381 5.94 2.10 38.26 2.67
7626 10678 2.879002 TTCCATCTTAGCTCGCTGAG 57.121 50.000 4.48 4.48 0.00 3.35
7646 10698 4.341827 GCAATGTTGCGCAAACCT 57.658 50.000 26.87 9.57 45.11 3.50
7687 10739 5.044698 AGAGTACAGTCCCTAGTCTTAGCTT 60.045 44.000 0.00 0.00 0.00 3.74
7703 10755 1.535204 GCTTGCTGCCCCTTTGCTAA 61.535 55.000 0.00 0.00 35.15 3.09
7767 10819 6.772716 GGCATGGAGATTGGTTTTCTATCTAA 59.227 38.462 0.00 0.00 0.00 2.10
7769 10821 9.507329 GCATGGAGATTGGTTTTCTATCTAATA 57.493 33.333 0.00 0.00 0.00 0.98
7798 10850 3.493767 AAAGGAGTCTGGTTTCCTCAC 57.506 47.619 0.00 0.00 42.95 3.51
7801 10853 0.033504 GAGTCTGGTTTCCTCACGCA 59.966 55.000 0.00 0.00 0.00 5.24
7802 10854 0.249911 AGTCTGGTTTCCTCACGCAC 60.250 55.000 0.00 0.00 0.00 5.34
7803 10855 0.531974 GTCTGGTTTCCTCACGCACA 60.532 55.000 0.00 0.00 0.00 4.57
7804 10856 0.531974 TCTGGTTTCCTCACGCACAC 60.532 55.000 0.00 0.00 0.00 3.82
7806 10858 2.248431 GTTTCCTCACGCACACGC 59.752 61.111 0.00 0.00 45.53 5.34
7807 10859 2.108157 TTTCCTCACGCACACGCT 59.892 55.556 0.00 0.00 45.53 5.07
7808 10860 1.522806 TTTCCTCACGCACACGCTT 60.523 52.632 0.00 0.00 45.53 4.68
7811 10863 0.457853 TCCTCACGCACACGCTTATC 60.458 55.000 0.00 0.00 45.53 1.75
7812 10864 0.735978 CCTCACGCACACGCTTATCA 60.736 55.000 0.00 0.00 45.53 2.15
7813 10865 0.642291 CTCACGCACACGCTTATCAG 59.358 55.000 0.00 0.00 45.53 2.90
7814 10866 0.038618 TCACGCACACGCTTATCAGT 60.039 50.000 0.00 0.00 45.53 3.41
7816 10868 1.989864 CACGCACACGCTTATCAGTTA 59.010 47.619 0.00 0.00 45.53 2.24
7817 10869 2.410392 CACGCACACGCTTATCAGTTAA 59.590 45.455 0.00 0.00 45.53 2.01
7855 10980 5.939764 ATAACAGTGAGGCAGTCTTATCA 57.060 39.130 0.00 0.00 0.00 2.15
7861 10986 4.040952 AGTGAGGCAGTCTTATCACACTTT 59.959 41.667 6.91 0.00 43.55 2.66
7865 10990 5.491982 AGGCAGTCTTATCACACTTTTAGG 58.508 41.667 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.589414 ACTCTCCTCCAATTCAGGGG 58.411 55.000 0.87 0.00 31.86 4.79
1 2 5.379706 AATTACTCTCCTCCAATTCAGGG 57.620 43.478 0.87 0.00 0.00 4.45
2 3 7.115414 AGAAAATTACTCTCCTCCAATTCAGG 58.885 38.462 0.00 0.00 0.00 3.86
3 4 8.572855 AAGAAAATTACTCTCCTCCAATTCAG 57.427 34.615 0.00 0.00 0.00 3.02
4 5 8.796475 CAAAGAAAATTACTCTCCTCCAATTCA 58.204 33.333 0.00 0.00 0.00 2.57
5 6 7.757173 GCAAAGAAAATTACTCTCCTCCAATTC 59.243 37.037 0.00 0.00 0.00 2.17
10 11 4.095036 CCGCAAAGAAAATTACTCTCCTCC 59.905 45.833 0.00 0.00 0.00 4.30
14 15 5.622770 TTCCCGCAAAGAAAATTACTCTC 57.377 39.130 0.00 0.00 0.00 3.20
26 27 4.459337 ACTCTCCTTTAATTTCCCGCAAAG 59.541 41.667 0.00 0.00 0.00 2.77
29 30 3.713826 ACTCTCCTTTAATTTCCCGCA 57.286 42.857 0.00 0.00 0.00 5.69
30 31 6.694877 AATTACTCTCCTTTAATTTCCCGC 57.305 37.500 0.00 0.00 0.00 6.13
31 32 8.618677 GGTTAATTACTCTCCTTTAATTTCCCG 58.381 37.037 0.00 0.00 31.73 5.14
34 35 8.890718 AGCGGTTAATTACTCTCCTTTAATTTC 58.109 33.333 0.00 0.00 31.73 2.17
35 36 8.803397 AGCGGTTAATTACTCTCCTTTAATTT 57.197 30.769 0.00 0.00 31.73 1.82
36 37 9.895138 TTAGCGGTTAATTACTCTCCTTTAATT 57.105 29.630 0.00 0.00 33.47 1.40
37 38 9.895138 TTTAGCGGTTAATTACTCTCCTTTAAT 57.105 29.630 0.00 0.00 0.00 1.40
39 40 8.313292 TGTTTAGCGGTTAATTACTCTCCTTTA 58.687 33.333 0.00 0.00 0.00 1.85
40 41 7.163441 TGTTTAGCGGTTAATTACTCTCCTTT 58.837 34.615 0.00 0.00 0.00 3.11
41 42 6.704310 TGTTTAGCGGTTAATTACTCTCCTT 58.296 36.000 0.00 0.00 0.00 3.36
83 84 3.939066 ACTTTTCTCCTGTGGATAACCG 58.061 45.455 0.00 0.00 39.42 4.44
92 93 5.796424 AATGCATGAAACTTTTCTCCTGT 57.204 34.783 0.00 0.00 38.02 4.00
120 121 6.649973 TCCATTGCGTACTATCTAGTCTAGAC 59.350 42.308 15.41 15.41 37.69 2.59
127 128 6.013842 TGACATCCATTGCGTACTATCTAG 57.986 41.667 0.00 0.00 0.00 2.43
128 129 6.208599 TCATGACATCCATTGCGTACTATCTA 59.791 38.462 0.00 0.00 31.94 1.98
129 130 4.937201 TGACATCCATTGCGTACTATCT 57.063 40.909 0.00 0.00 0.00 1.98
130 131 5.230182 TCATGACATCCATTGCGTACTATC 58.770 41.667 0.00 0.00 31.94 2.08
132 133 4.664150 TCATGACATCCATTGCGTACTA 57.336 40.909 0.00 0.00 31.94 1.82
133 134 3.541996 TCATGACATCCATTGCGTACT 57.458 42.857 0.00 0.00 31.94 2.73
143 156 8.660373 GTTTTAGGAATCGATATCATGACATCC 58.340 37.037 8.38 0.00 0.00 3.51
144 157 9.208022 TGTTTTAGGAATCGATATCATGACATC 57.792 33.333 3.75 3.75 0.00 3.06
171 184 1.396996 AGTGTCATTATCCGTTTGCGC 59.603 47.619 0.00 0.00 36.67 6.09
198 211 1.726853 AGTTTGAATTCTCGCTCCGG 58.273 50.000 7.05 0.00 0.00 5.14
204 217 9.582431 TTTGGACTACTATAGTTTGAATTCTCG 57.418 33.333 11.40 0.00 39.59 4.04
259 275 2.872858 GGTGGTTTATGCTCGATTCCTC 59.127 50.000 0.00 0.00 0.00 3.71
353 369 1.068585 GGATTACTACCGGTGGGCG 59.931 63.158 23.02 8.10 36.48 6.13
365 381 4.510340 CCTGCTTTGTATACGGTGGATTAC 59.490 45.833 0.00 0.00 0.00 1.89
366 382 4.699637 CCTGCTTTGTATACGGTGGATTA 58.300 43.478 0.00 0.00 0.00 1.75
414 430 6.127842 GCCTCGTCTGACCCATTTTTATTTAA 60.128 38.462 1.55 0.00 0.00 1.52
415 431 5.355910 GCCTCGTCTGACCCATTTTTATTTA 59.644 40.000 1.55 0.00 0.00 1.40
416 432 4.157840 GCCTCGTCTGACCCATTTTTATTT 59.842 41.667 1.55 0.00 0.00 1.40
417 433 3.694566 GCCTCGTCTGACCCATTTTTATT 59.305 43.478 1.55 0.00 0.00 1.40
418 434 3.279434 GCCTCGTCTGACCCATTTTTAT 58.721 45.455 1.55 0.00 0.00 1.40
419 435 2.706890 GCCTCGTCTGACCCATTTTTA 58.293 47.619 1.55 0.00 0.00 1.52
420 436 1.534729 GCCTCGTCTGACCCATTTTT 58.465 50.000 1.55 0.00 0.00 1.94
421 437 0.673644 CGCCTCGTCTGACCCATTTT 60.674 55.000 1.55 0.00 0.00 1.82
422 438 1.079127 CGCCTCGTCTGACCCATTT 60.079 57.895 1.55 0.00 0.00 2.32
423 439 1.541310 TTCGCCTCGTCTGACCCATT 61.541 55.000 1.55 0.00 0.00 3.16
444 460 2.868899 CTTCAGGTTTGCTCCTCCTTT 58.131 47.619 0.00 0.00 35.37 3.11
639 673 5.304357 GGGGAATAAGAAAGAGAGAGAGGAG 59.696 48.000 0.00 0.00 0.00 3.69
640 674 5.042979 AGGGGAATAAGAAAGAGAGAGAGGA 60.043 44.000 0.00 0.00 0.00 3.71
641 675 5.215845 AGGGGAATAAGAAAGAGAGAGAGG 58.784 45.833 0.00 0.00 0.00 3.69
688 723 1.484038 CTGTTCCTCCTCCTCCTCTG 58.516 60.000 0.00 0.00 0.00 3.35
709 744 0.112412 CTAGGGCTCCCTCTCTCCTC 59.888 65.000 11.41 0.00 44.43 3.71
710 745 2.018884 GCTAGGGCTCCCTCTCTCCT 62.019 65.000 11.41 0.00 44.43 3.69
711 746 1.533033 GCTAGGGCTCCCTCTCTCC 60.533 68.421 11.41 0.00 44.43 3.71
809 850 2.278013 GCGGACGGATCGTGAGAC 60.278 66.667 0.00 0.00 46.97 3.36
811 852 4.907034 CGGCGGACGGATCGTGAG 62.907 72.222 0.00 0.00 41.37 3.51
906 947 3.204827 CAAGCCCGCCTCCGAATG 61.205 66.667 0.00 0.00 36.29 2.67
964 1006 0.033109 TCTCGCCCAGAATCTCCTCA 60.033 55.000 0.00 0.00 0.00 3.86
975 1017 3.147595 CTCACCGGATCTCGCCCA 61.148 66.667 9.46 0.00 37.59 5.36
1026 1068 1.745264 GATCTCTGGGAAGGAGCCG 59.255 63.158 0.00 0.00 0.00 5.52
1099 1141 3.194308 GAAGCGCAGGAGCAGCTC 61.194 66.667 14.69 14.69 45.20 4.09
1144 1186 2.145536 CCCAAACAAGGCAAAGCATTC 58.854 47.619 0.00 0.00 27.16 2.67
1187 1229 1.953686 TGCCGAACAGAAAGGGAAAAG 59.046 47.619 0.00 0.00 0.00 2.27
1223 1265 4.972875 GGGAGTGATGCCCAGAAG 57.027 61.111 0.00 0.00 45.31 2.85
1366 1408 1.139853 CAGAGGGAGGGAAAAGATCGG 59.860 57.143 0.00 0.00 0.00 4.18
1473 1516 1.726853 AGACTGCCGCATAACTCAAC 58.273 50.000 0.00 0.00 0.00 3.18
1511 1554 2.750712 GGAGCGCCAAATTACACCTTTA 59.249 45.455 2.29 0.00 0.00 1.85
1537 1580 5.177511 GCATGTGAATTGCGAGCTATAGTAA 59.822 40.000 0.84 0.00 0.00 2.24
1540 1583 3.495753 TGCATGTGAATTGCGAGCTATAG 59.504 43.478 0.00 0.00 43.10 1.31
1541 1584 3.465871 TGCATGTGAATTGCGAGCTATA 58.534 40.909 0.00 0.00 43.10 1.31
1543 1586 1.736612 TGCATGTGAATTGCGAGCTA 58.263 45.000 0.00 0.00 43.10 3.32
1607 1650 0.031994 AAAGCAACGGCCACAATGTC 59.968 50.000 2.24 0.00 42.56 3.06
1671 1714 0.460987 GTGCACAGATCGGGGAGAAG 60.461 60.000 13.17 0.00 0.00 2.85
1672 1715 1.596934 GTGCACAGATCGGGGAGAA 59.403 57.895 13.17 0.00 0.00 2.87
1673 1716 2.710902 CGTGCACAGATCGGGGAGA 61.711 63.158 18.64 0.00 0.00 3.71
1674 1717 2.202797 CGTGCACAGATCGGGGAG 60.203 66.667 18.64 0.00 0.00 4.30
1675 1718 2.678580 TCGTGCACAGATCGGGGA 60.679 61.111 18.64 0.00 0.00 4.81
1676 1719 2.202797 CTCGTGCACAGATCGGGG 60.203 66.667 18.64 0.00 0.00 5.73
1712 1761 0.506932 AACTGAAATCGTGACACGCG 59.493 50.000 22.99 3.53 42.21 6.01
1739 1788 7.791791 TTGAGGAGCAAGATCTTGAAGCATTC 61.792 42.308 34.43 22.22 42.93 2.67
1742 1791 2.303890 TGAGGAGCAAGATCTTGAAGCA 59.696 45.455 34.43 21.13 42.93 3.91
1776 1825 3.402110 TCAACTGTTGTGCAGGTAGATG 58.598 45.455 19.12 0.00 44.77 2.90
1802 1852 7.806180 ACAACCAGTATTAAGGAATAGATGCT 58.194 34.615 0.00 0.00 0.00 3.79
1885 1935 1.543802 GGTGGGTCGCAAAAATGATGA 59.456 47.619 0.00 0.00 0.00 2.92
2014 2065 2.701780 GCTCGTCAGAAGCTCCCGA 61.702 63.158 0.00 0.00 0.00 5.14
2042 2093 7.802720 TCACGTCAAATACATTTCACAAATCTG 59.197 33.333 0.00 0.00 0.00 2.90
2065 2116 7.066766 ACTCTGGAAAAGAATTGCAGATATCAC 59.933 37.037 11.88 0.00 44.01 3.06
2196 2247 0.388649 CTTTCTCTCCGGTGTGGACG 60.389 60.000 0.00 0.00 43.74 4.79
2552 2697 7.625553 CAAGTTCACTAGAGCAAATATACTGC 58.374 38.462 0.00 2.19 40.24 4.40
2710 3401 3.155093 AGTTCAAAGCTGCAACACTTG 57.845 42.857 1.02 0.00 0.00 3.16
2777 3485 4.528596 GCAGCTAATCTAATACTCCCTCCA 59.471 45.833 0.00 0.00 0.00 3.86
2800 3508 7.534085 TTTATTGCTATGAACTCAGTAACCG 57.466 36.000 0.00 0.00 0.00 4.44
2821 3529 6.116711 TGGCACTAGTTGGTACAGATTTTA 57.883 37.500 0.00 0.00 42.39 1.52
2967 3676 4.997395 ACAACACGCACTCTATGAAAGAAT 59.003 37.500 0.00 0.00 32.46 2.40
3838 6783 6.019152 CGATAAGGAAACAACAAACGTATGG 58.981 40.000 0.00 0.00 0.00 2.74
3891 6836 7.280876 TGACATAGAAATGGAGTAACTTCATGC 59.719 37.037 0.00 0.00 37.43 4.06
3916 6861 9.926158 AGTCAAGATTCTATGTAGCATAGATTG 57.074 33.333 16.56 16.68 31.45 2.67
4567 7513 8.826710 TCAATAACTCAAAAGTACAAGACACTG 58.173 33.333 0.00 0.00 33.48 3.66
4956 7905 4.227512 TCAACAGCACTGCATAAACAAG 57.772 40.909 3.30 0.00 0.00 3.16
4957 7906 4.277921 TGATCAACAGCACTGCATAAACAA 59.722 37.500 3.30 0.00 0.00 2.83
5117 8067 1.082104 GTTTTGAACTCCTGCCGCG 60.082 57.895 0.00 0.00 0.00 6.46
5254 8204 4.600062 AGGTTTGTTTCACCTTCTTGTCT 58.400 39.130 0.00 0.00 42.45 3.41
5418 8368 7.981225 AGTCCAAAATGTTATTCATTATGCCAC 59.019 33.333 0.00 0.00 44.85 5.01
5419 8369 8.076910 AGTCCAAAATGTTATTCATTATGCCA 57.923 30.769 0.00 0.00 44.85 4.92
5420 8370 8.947055 AAGTCCAAAATGTTATTCATTATGCC 57.053 30.769 0.00 0.00 44.85 4.40
5421 8371 9.585099 TGAAGTCCAAAATGTTATTCATTATGC 57.415 29.630 0.00 0.00 44.85 3.14
5480 8430 6.654582 GCCAACTGAAAAACCCAATAATTCAT 59.345 34.615 0.00 0.00 30.39 2.57
5565 8515 3.688185 GGATTTTCAGTTAACCGGGACTC 59.312 47.826 6.32 0.00 0.00 3.36
5716 8673 1.298859 GAGATGGCAGCGTTCGGTTT 61.299 55.000 0.00 0.00 0.00 3.27
5983 8946 6.095300 GGCCCAAATTTTATGCTTGCTATTTT 59.905 34.615 0.00 0.00 0.00 1.82
5991 8954 4.573021 ACATGGCCCAAATTTTATGCTT 57.427 36.364 0.00 0.00 0.00 3.91
6087 9134 7.058525 AGAGAATCAATACATCCTGCATCAAA 58.941 34.615 0.00 0.00 37.82 2.69
6100 9147 6.478344 CAGGTAGACTGCAAGAGAATCAATAC 59.522 42.308 0.00 0.00 40.97 1.89
6103 9150 4.323028 CCAGGTAGACTGCAAGAGAATCAA 60.323 45.833 0.00 0.00 46.14 2.57
6138 9185 8.610248 TGTTTCATGAATCAATTTGCAAGAAT 57.390 26.923 15.27 0.00 0.00 2.40
6416 9463 6.403636 CCTGGTCTTGCTGTATAATTGACAAC 60.404 42.308 0.00 0.00 0.00 3.32
6503 9550 1.881973 GTTCATTGCTGCCACTCTTCA 59.118 47.619 0.00 0.00 0.00 3.02
6522 9569 0.043637 TTGGGGAGGATAACCGGAGT 59.956 55.000 9.46 0.00 41.83 3.85
6526 9573 1.003812 TGTTGTTGGGGAGGATAACCG 59.996 52.381 0.00 0.00 41.83 4.44
6919 9966 2.730069 TCGTTTCTCGCTGTTTCGTTA 58.270 42.857 0.00 0.00 39.67 3.18
6970 10017 0.889186 CCCTGCGCTGTAAACCTTGT 60.889 55.000 9.73 0.00 0.00 3.16
6996 10048 3.055891 AGCAAACATAAGCATCAAACCCC 60.056 43.478 0.00 0.00 0.00 4.95
7014 10066 1.673923 CGCTTCCAGATCAGACAGCAA 60.674 52.381 0.00 0.00 0.00 3.91
7278 10330 1.066605 GGCAATTATCACCTGCAGCAG 59.933 52.381 16.23 16.23 37.83 4.24
7303 10355 3.335579 GGTGACCACTGATTCAACTACC 58.664 50.000 0.00 0.00 0.00 3.18
7309 10361 0.762418 AACCGGTGACCACTGATTCA 59.238 50.000 8.52 0.00 40.06 2.57
7320 10372 2.307768 TGCCATGTTTAAAACCGGTGA 58.692 42.857 8.52 0.00 0.00 4.02
7321 10373 2.802787 TGCCATGTTTAAAACCGGTG 57.197 45.000 8.52 0.00 0.00 4.94
7322 10374 3.459145 GTTTGCCATGTTTAAAACCGGT 58.541 40.909 0.00 0.00 0.00 5.28
7324 10376 2.097153 GCGTTTGCCATGTTTAAAACCG 60.097 45.455 0.00 0.00 33.98 4.44
7336 10388 1.753930 ATGATCATCTGCGTTTGCCA 58.246 45.000 1.18 0.00 41.78 4.92
7368 10420 2.153547 ATTGCCGTTTCGCCCCAAAG 62.154 55.000 0.00 0.00 0.00 2.77
7376 10428 2.840176 CGAAGATGAAATTGCCGTTTCG 59.160 45.455 6.47 0.69 40.20 3.46
7378 10430 2.817258 TCCGAAGATGAAATTGCCGTTT 59.183 40.909 0.00 0.00 0.00 3.60
7381 10433 1.268234 GCTCCGAAGATGAAATTGCCG 60.268 52.381 0.00 0.00 0.00 5.69
7382 10434 1.745087 TGCTCCGAAGATGAAATTGCC 59.255 47.619 0.00 0.00 0.00 4.52
7384 10436 5.514204 GTGATTTGCTCCGAAGATGAAATTG 59.486 40.000 0.00 0.00 0.00 2.32
7385 10437 5.183713 TGTGATTTGCTCCGAAGATGAAATT 59.816 36.000 0.00 0.00 0.00 1.82
7387 10439 4.071423 TGTGATTTGCTCCGAAGATGAAA 58.929 39.130 0.00 0.00 0.00 2.69
7388 10440 3.673902 TGTGATTTGCTCCGAAGATGAA 58.326 40.909 0.00 0.00 0.00 2.57
7389 10441 3.333029 TGTGATTTGCTCCGAAGATGA 57.667 42.857 0.00 0.00 0.00 2.92
7390 10442 4.627611 AATGTGATTTGCTCCGAAGATG 57.372 40.909 0.00 0.00 0.00 2.90
7391 10443 4.701651 TCAAATGTGATTTGCTCCGAAGAT 59.298 37.500 4.47 0.00 46.96 2.40
7392 10444 4.071423 TCAAATGTGATTTGCTCCGAAGA 58.929 39.130 4.47 0.00 46.96 2.87
7393 10445 4.424061 TCAAATGTGATTTGCTCCGAAG 57.576 40.909 4.47 0.00 46.96 3.79
7394 10446 4.380761 CCATCAAATGTGATTTGCTCCGAA 60.381 41.667 0.00 0.00 46.96 4.30
7395 10447 3.129113 CCATCAAATGTGATTTGCTCCGA 59.871 43.478 0.00 0.00 46.96 4.55
7396 10448 3.441163 CCATCAAATGTGATTTGCTCCG 58.559 45.455 0.00 0.00 46.96 4.63
7397 10449 3.192466 GCCATCAAATGTGATTTGCTCC 58.808 45.455 9.10 0.00 46.96 4.70
7398 10450 3.852286 TGCCATCAAATGTGATTTGCTC 58.148 40.909 15.04 0.00 46.96 4.26
7399 10451 3.965379 TGCCATCAAATGTGATTTGCT 57.035 38.095 15.04 0.00 46.96 3.91
7400 10452 5.353123 AGAATTGCCATCAAATGTGATTTGC 59.647 36.000 9.35 9.35 46.96 3.68
7402 10454 7.844009 AGTAGAATTGCCATCAAATGTGATTT 58.156 30.769 0.00 0.00 42.03 2.17
7403 10455 7.414222 AGTAGAATTGCCATCAAATGTGATT 57.586 32.000 0.00 0.00 42.03 2.57
7404 10456 7.093640 ACAAGTAGAATTGCCATCAAATGTGAT 60.094 33.333 0.00 0.00 38.10 3.06
7405 10457 6.209192 ACAAGTAGAATTGCCATCAAATGTGA 59.791 34.615 0.00 0.00 35.56 3.58
7406 10458 6.309494 CACAAGTAGAATTGCCATCAAATGTG 59.691 38.462 0.00 0.00 35.56 3.21
7407 10459 6.209192 TCACAAGTAGAATTGCCATCAAATGT 59.791 34.615 0.00 0.00 35.56 2.71
7408 10460 6.623486 TCACAAGTAGAATTGCCATCAAATG 58.377 36.000 0.00 0.00 35.56 2.32
7409 10461 6.839124 TCACAAGTAGAATTGCCATCAAAT 57.161 33.333 0.00 0.00 35.56 2.32
7410 10462 6.647334 TTCACAAGTAGAATTGCCATCAAA 57.353 33.333 0.00 0.00 35.56 2.69
7411 10463 6.647334 TTTCACAAGTAGAATTGCCATCAA 57.353 33.333 0.00 0.00 36.51 2.57
7412 10464 6.647334 TTTTCACAAGTAGAATTGCCATCA 57.353 33.333 0.00 0.00 33.28 3.07
7413 10465 9.638239 TTTATTTTCACAAGTAGAATTGCCATC 57.362 29.630 0.00 0.00 33.28 3.51
7415 10467 9.638239 GATTTATTTTCACAAGTAGAATTGCCA 57.362 29.630 0.00 0.00 33.28 4.92
7416 10468 9.638239 TGATTTATTTTCACAAGTAGAATTGCC 57.362 29.630 0.00 0.00 33.28 4.52
7422 10474 9.872757 GTCGTTTGATTTATTTTCACAAGTAGA 57.127 29.630 0.00 0.00 0.00 2.59
7423 10475 8.827599 CGTCGTTTGATTTATTTTCACAAGTAG 58.172 33.333 0.00 0.00 0.00 2.57
7424 10476 7.799447 CCGTCGTTTGATTTATTTTCACAAGTA 59.201 33.333 0.00 0.00 0.00 2.24
7425 10477 6.635239 CCGTCGTTTGATTTATTTTCACAAGT 59.365 34.615 0.00 0.00 0.00 3.16
7426 10478 6.398517 GCCGTCGTTTGATTTATTTTCACAAG 60.399 38.462 0.00 0.00 0.00 3.16
7427 10479 5.399892 GCCGTCGTTTGATTTATTTTCACAA 59.600 36.000 0.00 0.00 0.00 3.33
7428 10480 4.912766 GCCGTCGTTTGATTTATTTTCACA 59.087 37.500 0.00 0.00 0.00 3.58
7429 10481 4.912766 TGCCGTCGTTTGATTTATTTTCAC 59.087 37.500 0.00 0.00 0.00 3.18
7430 10482 5.109662 TGCCGTCGTTTGATTTATTTTCA 57.890 34.783 0.00 0.00 0.00 2.69
7431 10483 5.151389 ACTGCCGTCGTTTGATTTATTTTC 58.849 37.500 0.00 0.00 0.00 2.29
7432 10484 5.116069 ACTGCCGTCGTTTGATTTATTTT 57.884 34.783 0.00 0.00 0.00 1.82
7433 10485 4.759516 ACTGCCGTCGTTTGATTTATTT 57.240 36.364 0.00 0.00 0.00 1.40
7434 10486 4.759516 AACTGCCGTCGTTTGATTTATT 57.240 36.364 0.00 0.00 0.00 1.40
7435 10487 4.759516 AAACTGCCGTCGTTTGATTTAT 57.240 36.364 0.00 0.00 33.64 1.40
7436 10488 4.555348 AAAACTGCCGTCGTTTGATTTA 57.445 36.364 0.00 0.00 35.00 1.40
7437 10489 3.430333 AAAACTGCCGTCGTTTGATTT 57.570 38.095 0.00 0.00 35.00 2.17
7438 10490 3.430333 AAAAACTGCCGTCGTTTGATT 57.570 38.095 0.00 0.00 35.00 2.57
7439 10491 4.555348 TTAAAAACTGCCGTCGTTTGAT 57.445 36.364 0.00 0.00 35.00 2.57
7440 10492 4.352600 TTTAAAAACTGCCGTCGTTTGA 57.647 36.364 0.00 0.00 35.00 2.69
7441 10493 4.735822 TCATTTAAAAACTGCCGTCGTTTG 59.264 37.500 0.00 0.00 35.00 2.93
7442 10494 4.922719 TCATTTAAAAACTGCCGTCGTTT 58.077 34.783 0.00 0.00 36.22 3.60
7443 10495 4.555348 TCATTTAAAAACTGCCGTCGTT 57.445 36.364 0.00 0.00 0.00 3.85
7444 10496 4.555348 TTCATTTAAAAACTGCCGTCGT 57.445 36.364 0.00 0.00 0.00 4.34
7445 10497 5.874892 TTTTCATTTAAAAACTGCCGTCG 57.125 34.783 0.00 0.00 34.11 5.12
7446 10498 7.626446 ACAATTTTCATTTAAAAACTGCCGTC 58.374 30.769 0.00 0.00 40.37 4.79
7447 10499 7.494298 AGACAATTTTCATTTAAAAACTGCCGT 59.506 29.630 0.00 0.00 40.37 5.68
7448 10500 7.850501 AGACAATTTTCATTTAAAAACTGCCG 58.149 30.769 0.00 0.00 40.37 5.69
7449 10501 9.650371 GAAGACAATTTTCATTTAAAAACTGCC 57.350 29.630 0.00 0.00 40.37 4.85
7460 10512 9.741647 GTTTCTTCAGAGAAGACAATTTTCATT 57.258 29.630 8.84 0.00 42.55 2.57
7461 10513 9.129532 AGTTTCTTCAGAGAAGACAATTTTCAT 57.870 29.630 8.84 0.00 42.55 2.57
7462 10514 8.400947 CAGTTTCTTCAGAGAAGACAATTTTCA 58.599 33.333 8.84 0.00 42.55 2.69
7463 10515 7.378194 GCAGTTTCTTCAGAGAAGACAATTTTC 59.622 37.037 8.84 0.00 42.55 2.29
7464 10516 7.199078 GCAGTTTCTTCAGAGAAGACAATTTT 58.801 34.615 8.84 0.00 42.55 1.82
7465 10517 6.238869 GGCAGTTTCTTCAGAGAAGACAATTT 60.239 38.462 8.84 0.12 42.55 1.82
7466 10518 5.240403 GGCAGTTTCTTCAGAGAAGACAATT 59.760 40.000 8.84 2.69 42.55 2.32
7467 10519 4.759183 GGCAGTTTCTTCAGAGAAGACAAT 59.241 41.667 8.84 0.00 42.55 2.71
7468 10520 4.130118 GGCAGTTTCTTCAGAGAAGACAA 58.870 43.478 8.84 5.07 42.55 3.18
7469 10521 3.134623 TGGCAGTTTCTTCAGAGAAGACA 59.865 43.478 8.84 0.50 42.55 3.41
7470 10522 3.733337 TGGCAGTTTCTTCAGAGAAGAC 58.267 45.455 8.84 0.52 42.55 3.01
7471 10523 4.202398 ACATGGCAGTTTCTTCAGAGAAGA 60.202 41.667 5.41 5.41 42.55 2.87
7472 10524 4.070716 ACATGGCAGTTTCTTCAGAGAAG 58.929 43.478 0.00 0.39 42.55 2.85
7473 10525 4.067896 GACATGGCAGTTTCTTCAGAGAA 58.932 43.478 0.00 0.00 40.07 2.87
7474 10526 3.668447 GACATGGCAGTTTCTTCAGAGA 58.332 45.455 0.00 0.00 0.00 3.10
7475 10527 2.414481 CGACATGGCAGTTTCTTCAGAG 59.586 50.000 0.00 0.00 0.00 3.35
7476 10528 2.416747 CGACATGGCAGTTTCTTCAGA 58.583 47.619 0.00 0.00 0.00 3.27
7477 10529 1.135859 GCGACATGGCAGTTTCTTCAG 60.136 52.381 0.00 0.00 0.00 3.02
7478 10530 0.874390 GCGACATGGCAGTTTCTTCA 59.126 50.000 0.00 0.00 0.00 3.02
7479 10531 1.160137 AGCGACATGGCAGTTTCTTC 58.840 50.000 0.00 0.00 34.64 2.87
7480 10532 2.472695 TAGCGACATGGCAGTTTCTT 57.527 45.000 0.00 0.00 34.64 2.52
7481 10533 2.093500 TCATAGCGACATGGCAGTTTCT 60.093 45.455 0.00 0.00 34.64 2.52
7482 10534 2.279741 TCATAGCGACATGGCAGTTTC 58.720 47.619 0.00 0.00 34.64 2.78
7483 10535 2.401583 TCATAGCGACATGGCAGTTT 57.598 45.000 0.00 0.00 34.64 2.66
7484 10536 2.093500 TCTTCATAGCGACATGGCAGTT 60.093 45.455 0.00 0.00 34.64 3.16
7485 10537 1.482182 TCTTCATAGCGACATGGCAGT 59.518 47.619 0.00 0.00 34.64 4.40
7486 10538 2.229675 TCTTCATAGCGACATGGCAG 57.770 50.000 0.00 0.00 34.64 4.85
7487 10539 2.689553 TTCTTCATAGCGACATGGCA 57.310 45.000 0.00 0.00 34.64 4.92
7488 10540 4.285292 CATTTTCTTCATAGCGACATGGC 58.715 43.478 0.00 0.00 0.00 4.40
7489 10541 4.285292 GCATTTTCTTCATAGCGACATGG 58.715 43.478 0.00 0.00 0.00 3.66
7490 10542 4.201940 TGGCATTTTCTTCATAGCGACATG 60.202 41.667 0.00 0.00 0.00 3.21
7491 10543 3.947196 TGGCATTTTCTTCATAGCGACAT 59.053 39.130 0.00 0.00 0.00 3.06
7492 10544 3.126858 GTGGCATTTTCTTCATAGCGACA 59.873 43.478 0.00 0.00 32.20 4.35
7493 10545 3.487544 GGTGGCATTTTCTTCATAGCGAC 60.488 47.826 0.00 0.00 0.00 5.19
7494 10546 2.682856 GGTGGCATTTTCTTCATAGCGA 59.317 45.455 0.00 0.00 0.00 4.93
7495 10547 2.223572 GGGTGGCATTTTCTTCATAGCG 60.224 50.000 0.00 0.00 0.00 4.26
7496 10548 2.101415 GGGGTGGCATTTTCTTCATAGC 59.899 50.000 0.00 0.00 0.00 2.97
7497 10549 2.695147 GGGGGTGGCATTTTCTTCATAG 59.305 50.000 0.00 0.00 0.00 2.23
7498 10550 2.314549 AGGGGGTGGCATTTTCTTCATA 59.685 45.455 0.00 0.00 0.00 2.15
7499 10551 1.079323 AGGGGGTGGCATTTTCTTCAT 59.921 47.619 0.00 0.00 0.00 2.57
7500 10552 0.486879 AGGGGGTGGCATTTTCTTCA 59.513 50.000 0.00 0.00 0.00 3.02
7501 10553 0.897621 CAGGGGGTGGCATTTTCTTC 59.102 55.000 0.00 0.00 0.00 2.87
7502 10554 0.486879 TCAGGGGGTGGCATTTTCTT 59.513 50.000 0.00 0.00 0.00 2.52
7503 10555 0.040204 CTCAGGGGGTGGCATTTTCT 59.960 55.000 0.00 0.00 0.00 2.52
7504 10556 0.039618 TCTCAGGGGGTGGCATTTTC 59.960 55.000 0.00 0.00 0.00 2.29
7505 10557 0.486879 TTCTCAGGGGGTGGCATTTT 59.513 50.000 0.00 0.00 0.00 1.82
7506 10558 0.251787 GTTCTCAGGGGGTGGCATTT 60.252 55.000 0.00 0.00 0.00 2.32
7507 10559 1.142688 AGTTCTCAGGGGGTGGCATT 61.143 55.000 0.00 0.00 0.00 3.56
7508 10560 0.253160 TAGTTCTCAGGGGGTGGCAT 60.253 55.000 0.00 0.00 0.00 4.40
7509 10561 0.474854 TTAGTTCTCAGGGGGTGGCA 60.475 55.000 0.00 0.00 0.00 4.92
7510 10562 0.696501 TTTAGTTCTCAGGGGGTGGC 59.303 55.000 0.00 0.00 0.00 5.01
7511 10563 3.518992 TTTTTAGTTCTCAGGGGGTGG 57.481 47.619 0.00 0.00 0.00 4.61
7512 10564 4.462834 GGAATTTTTAGTTCTCAGGGGGTG 59.537 45.833 0.00 0.00 0.00 4.61
7513 10565 4.107311 TGGAATTTTTAGTTCTCAGGGGGT 59.893 41.667 0.00 0.00 0.00 4.95
7514 10566 4.672899 TGGAATTTTTAGTTCTCAGGGGG 58.327 43.478 0.00 0.00 0.00 5.40
7515 10567 7.954666 TTATGGAATTTTTAGTTCTCAGGGG 57.045 36.000 0.00 0.00 0.00 4.79
7552 10604 0.178876 TCATCAGGGAGGGTGGAACA 60.179 55.000 0.00 0.00 39.98 3.18
7553 10605 1.141858 GATCATCAGGGAGGGTGGAAC 59.858 57.143 0.00 0.00 0.00 3.62
7554 10606 1.511613 GATCATCAGGGAGGGTGGAA 58.488 55.000 0.00 0.00 0.00 3.53
7555 10607 0.760567 CGATCATCAGGGAGGGTGGA 60.761 60.000 0.00 0.00 0.00 4.02
7556 10608 1.050988 ACGATCATCAGGGAGGGTGG 61.051 60.000 0.00 0.00 0.00 4.61
7557 10609 0.833287 AACGATCATCAGGGAGGGTG 59.167 55.000 0.00 0.00 0.00 4.61
7558 10610 1.123928 GAACGATCATCAGGGAGGGT 58.876 55.000 0.00 0.00 0.00 4.34
7559 10611 0.032678 CGAACGATCATCAGGGAGGG 59.967 60.000 0.00 0.00 0.00 4.30
7560 10612 0.747255 ACGAACGATCATCAGGGAGG 59.253 55.000 0.14 0.00 0.00 4.30
7561 10613 2.099921 AGAACGAACGATCATCAGGGAG 59.900 50.000 0.14 0.00 0.00 4.30
7562 10614 2.099263 GAGAACGAACGATCATCAGGGA 59.901 50.000 0.14 0.00 0.00 4.20
7563 10615 2.464865 GAGAACGAACGATCATCAGGG 58.535 52.381 0.14 0.00 0.00 4.45
7564 10616 2.159240 TGGAGAACGAACGATCATCAGG 60.159 50.000 0.14 0.00 0.00 3.86
7565 10617 3.111838 CTGGAGAACGAACGATCATCAG 58.888 50.000 0.14 6.89 0.00 2.90
7566 10618 2.492088 ACTGGAGAACGAACGATCATCA 59.508 45.455 0.14 1.30 0.00 3.07
7567 10619 3.152261 ACTGGAGAACGAACGATCATC 57.848 47.619 0.14 0.00 0.00 2.92
7568 10620 3.512680 GAACTGGAGAACGAACGATCAT 58.487 45.455 0.14 0.00 0.00 2.45
7569 10621 2.667448 CGAACTGGAGAACGAACGATCA 60.667 50.000 0.14 0.00 0.00 2.92
7570 10622 1.912110 CGAACTGGAGAACGAACGATC 59.088 52.381 0.14 0.00 0.00 3.69
7571 10623 1.978542 CGAACTGGAGAACGAACGAT 58.021 50.000 0.14 0.00 0.00 3.73
7572 10624 0.662374 GCGAACTGGAGAACGAACGA 60.662 55.000 0.14 0.00 0.00 3.85
7573 10625 1.615107 GGCGAACTGGAGAACGAACG 61.615 60.000 0.00 0.00 0.00 3.95
7574 10626 0.599204 TGGCGAACTGGAGAACGAAC 60.599 55.000 0.00 0.00 0.00 3.95
7575 10627 0.319555 CTGGCGAACTGGAGAACGAA 60.320 55.000 0.00 0.00 0.00 3.85
7576 10628 1.289066 CTGGCGAACTGGAGAACGA 59.711 57.895 0.00 0.00 0.00 3.85
7577 10629 0.600255 AACTGGCGAACTGGAGAACG 60.600 55.000 0.00 0.00 0.00 3.95
7578 10630 2.450609 TAACTGGCGAACTGGAGAAC 57.549 50.000 0.00 0.00 0.00 3.01
7579 10631 2.565391 TCATAACTGGCGAACTGGAGAA 59.435 45.455 0.00 0.00 0.00 2.87
7580 10632 2.166459 CTCATAACTGGCGAACTGGAGA 59.834 50.000 0.00 0.00 0.00 3.71
7581 10633 2.544685 CTCATAACTGGCGAACTGGAG 58.455 52.381 0.00 0.00 0.00 3.86
7582 10634 1.405526 GCTCATAACTGGCGAACTGGA 60.406 52.381 0.00 0.00 0.00 3.86
7583 10635 1.009829 GCTCATAACTGGCGAACTGG 58.990 55.000 0.00 0.00 0.00 4.00
7590 10642 1.599542 GGAATGACGCTCATAACTGGC 59.400 52.381 1.73 0.00 35.76 4.85
7591 10643 2.905075 TGGAATGACGCTCATAACTGG 58.095 47.619 1.73 0.00 35.76 4.00
7592 10644 4.375272 AGATGGAATGACGCTCATAACTG 58.625 43.478 1.73 0.00 35.76 3.16
7593 10645 4.679373 AGATGGAATGACGCTCATAACT 57.321 40.909 1.73 0.00 35.76 2.24
7594 10646 5.107298 GCTAAGATGGAATGACGCTCATAAC 60.107 44.000 1.73 0.18 35.76 1.89
7595 10647 4.991056 GCTAAGATGGAATGACGCTCATAA 59.009 41.667 1.73 0.00 35.76 1.90
7596 10648 4.281941 AGCTAAGATGGAATGACGCTCATA 59.718 41.667 0.00 0.00 35.76 2.15
7597 10649 3.070734 AGCTAAGATGGAATGACGCTCAT 59.929 43.478 0.00 0.00 39.09 2.90
7598 10650 2.432146 AGCTAAGATGGAATGACGCTCA 59.568 45.455 0.00 0.00 0.00 4.26
7599 10651 3.056304 GAGCTAAGATGGAATGACGCTC 58.944 50.000 0.00 0.00 36.32 5.03
7600 10652 2.544694 CGAGCTAAGATGGAATGACGCT 60.545 50.000 0.00 0.00 0.00 5.07
7601 10653 1.789464 CGAGCTAAGATGGAATGACGC 59.211 52.381 0.00 0.00 0.00 5.19
7602 10654 1.789464 GCGAGCTAAGATGGAATGACG 59.211 52.381 0.00 0.00 0.00 4.35
7603 10655 2.799412 CAGCGAGCTAAGATGGAATGAC 59.201 50.000 0.00 0.00 0.00 3.06
7604 10656 2.695147 TCAGCGAGCTAAGATGGAATGA 59.305 45.455 7.02 0.00 0.00 2.57
7605 10657 3.058450 CTCAGCGAGCTAAGATGGAATG 58.942 50.000 7.02 0.00 0.00 2.67
7609 10661 1.599171 CGTCTCAGCGAGCTAAGATGG 60.599 57.143 9.14 0.00 0.00 3.51
7646 10698 1.864711 CTCTTGGCGACGAAAACTCAA 59.135 47.619 0.00 0.00 0.00 3.02
7687 10739 0.112218 TTCTTAGCAAAGGGGCAGCA 59.888 50.000 0.00 0.00 35.83 4.41
7703 10755 0.110486 ACCACCACCGAAATGCTTCT 59.890 50.000 0.00 0.00 0.00 2.85
7713 10765 0.944311 CGTTCTCTTCACCACCACCG 60.944 60.000 0.00 0.00 0.00 4.94
7715 10767 0.249911 AGCGTTCTCTTCACCACCAC 60.250 55.000 0.00 0.00 0.00 4.16
7776 10828 4.207955 GTGAGGAAACCAGACTCCTTTTT 58.792 43.478 0.00 0.00 42.34 1.94
7777 10829 3.744530 CGTGAGGAAACCAGACTCCTTTT 60.745 47.826 0.00 0.00 42.34 2.27
7778 10830 2.224305 CGTGAGGAAACCAGACTCCTTT 60.224 50.000 0.00 0.00 42.34 3.11
7779 10831 1.344763 CGTGAGGAAACCAGACTCCTT 59.655 52.381 0.00 0.00 42.34 3.36
7780 10832 0.969894 CGTGAGGAAACCAGACTCCT 59.030 55.000 0.00 0.00 45.07 3.69
7781 10833 0.670854 GCGTGAGGAAACCAGACTCC 60.671 60.000 0.00 0.00 0.00 3.85
7782 10834 0.033504 TGCGTGAGGAAACCAGACTC 59.966 55.000 0.00 0.00 0.00 3.36
7783 10835 0.249911 GTGCGTGAGGAAACCAGACT 60.250 55.000 0.00 0.00 0.00 3.24
7786 10838 1.831389 CGTGTGCGTGAGGAAACCAG 61.831 60.000 0.00 0.00 36.11 4.00
7787 10839 1.885388 CGTGTGCGTGAGGAAACCA 60.885 57.895 0.00 0.00 36.11 3.67
7788 10840 2.935955 CGTGTGCGTGAGGAAACC 59.064 61.111 0.00 0.00 36.11 3.27
7789 10841 2.248431 GCGTGTGCGTGAGGAAAC 59.752 61.111 0.00 0.00 40.81 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.