Multiple sequence alignment - TraesCS3B01G256500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G256500 chr3B 100.000 4510 0 0 1 4510 413990258 413994767 0.000000e+00 8329.0
1 TraesCS3B01G256500 chr3B 93.814 291 18 0 929 1219 726126170 726126460 5.360000e-119 438.0
2 TraesCS3B01G256500 chr3B 81.034 116 16 5 3754 3868 571810515 571810625 2.230000e-13 87.9
3 TraesCS3B01G256500 chr3A 94.714 2308 83 15 1457 3740 426652313 426654605 0.000000e+00 3550.0
4 TraesCS3B01G256500 chr3A 89.677 1453 70 25 1 1431 426650872 426652266 0.000000e+00 1779.0
5 TraesCS3B01G256500 chr3A 84.133 271 32 7 4052 4316 426656233 426656498 7.490000e-63 252.0
6 TraesCS3B01G256500 chr3D 92.112 1458 44 16 1 1436 307570936 307569528 0.000000e+00 1989.0
7 TraesCS3B01G256500 chr3D 94.666 1181 47 4 2688 3868 307568069 307566905 0.000000e+00 1818.0
8 TraesCS3B01G256500 chr3D 94.308 650 22 11 1983 2632 307568728 307568094 0.000000e+00 981.0
9 TraesCS3B01G256500 chr3D 96.281 484 15 2 1472 1953 307569365 307568883 0.000000e+00 791.0
10 TraesCS3B01G256500 chr3D 88.889 180 18 1 4037 4216 307566910 307566733 2.110000e-53 220.0
11 TraesCS3B01G256500 chr3D 92.537 67 5 0 4037 4103 426881077 426881143 3.710000e-16 97.1
12 TraesCS3B01G256500 chr3D 92.424 66 5 0 4037 4102 580128394 580128329 1.340000e-15 95.3
13 TraesCS3B01G256500 chr1D 81.623 1540 223 38 2014 3532 2126354 2124854 0.000000e+00 1221.0
14 TraesCS3B01G256500 chr1D 84.975 812 111 9 2698 3499 2119970 2119160 0.000000e+00 813.0
15 TraesCS3B01G256500 chr1D 83.101 574 73 14 2014 2574 2120536 2119974 6.740000e-138 501.0
16 TraesCS3B01G256500 chr1D 85.484 310 37 4 987 1295 2122120 2121818 2.620000e-82 316.0
17 TraesCS3B01G256500 chr1D 87.151 179 21 2 3861 4037 481182290 481182112 7.650000e-48 202.0
18 TraesCS3B01G256500 chr1D 89.744 156 16 0 3876 4031 344838711 344838866 2.750000e-47 200.0
19 TraesCS3B01G256500 chr1D 88.095 168 19 1 3870 4037 481319938 481319772 9.900000e-47 198.0
20 TraesCS3B01G256500 chr1D 90.099 101 10 0 3768 3868 468745631 468745531 1.020000e-26 132.0
21 TraesCS3B01G256500 chr1D 92.424 66 5 0 4037 4102 347408248 347408183 1.340000e-15 95.3
22 TraesCS3B01G256500 chr1D 92.424 66 5 0 4037 4102 365430394 365430329 1.340000e-15 95.3
23 TraesCS3B01G256500 chr1D 97.561 41 1 0 1811 1851 2121334 2121294 2.250000e-08 71.3
24 TraesCS3B01G256500 chr1B 85.891 808 104 7 2698 3497 1472039 1472844 0.000000e+00 852.0
25 TraesCS3B01G256500 chr1B 85.732 806 106 7 2698 3497 1424593 1423791 0.000000e+00 843.0
26 TraesCS3B01G256500 chr1B 84.615 572 69 9 2014 2574 1471472 1472035 6.590000e-153 551.0
27 TraesCS3B01G256500 chr1B 84.266 572 71 9 2014 2574 1425160 1424597 1.430000e-149 540.0
28 TraesCS3B01G256500 chr1B 92.713 247 17 1 990 1235 623345617 623345863 5.550000e-94 355.0
29 TraesCS3B01G256500 chr1B 87.500 56 7 0 1664 1719 1426022 1425967 1.050000e-06 65.8
30 TraesCS3B01G256500 chr1B 91.111 45 4 0 1655 1699 1470757 1470801 1.350000e-05 62.1
31 TraesCS3B01G256500 chr4D 83.976 830 118 7 2688 3505 3252721 3253547 0.000000e+00 782.0
32 TraesCS3B01G256500 chr4D 81.469 572 80 10 2014 2584 3252094 3252640 3.200000e-121 446.0
33 TraesCS3B01G256500 chr4D 82.759 261 45 0 1035 1295 3251393 3251653 2.710000e-57 233.0
34 TraesCS3B01G256500 chr4D 90.506 158 14 1 3874 4030 416938178 416938021 1.640000e-49 207.0
35 TraesCS3B01G256500 chr4D 90.909 66 6 0 4037 4102 479414261 479414326 6.210000e-14 89.8
36 TraesCS3B01G256500 chr1A 84.483 812 105 12 2698 3499 1229728 1228928 0.000000e+00 782.0
37 TraesCS3B01G256500 chr1A 86.561 253 26 5 2322 2574 1229976 1229732 5.750000e-69 272.0
38 TraesCS3B01G256500 chr1A 92.537 67 4 1 4040 4106 449845889 449845824 1.340000e-15 95.3
39 TraesCS3B01G256500 chr5B 79.852 1082 157 38 2009 3080 636895522 636896552 0.000000e+00 734.0
40 TraesCS3B01G256500 chr5B 86.408 309 39 3 988 1295 636891158 636891464 7.230000e-88 335.0
41 TraesCS3B01G256500 chr4A 82.530 830 124 9 2688 3505 602270616 602269796 0.000000e+00 710.0
42 TraesCS3B01G256500 chr4A 80.755 556 77 14 2032 2584 602271225 602270697 1.510000e-109 407.0
43 TraesCS3B01G256500 chr4A 84.716 229 35 0 2014 2242 735504364 735504136 3.510000e-56 230.0
44 TraesCS3B01G256500 chr5D 89.044 429 47 0 3082 3510 506159480 506159908 2.390000e-147 532.0
45 TraesCS3B01G256500 chr5D 88.997 309 32 2 988 1295 506156069 506156376 9.160000e-102 381.0
46 TraesCS3B01G256500 chr5D 88.824 170 16 3 3874 4042 537391470 537391303 5.910000e-49 206.0
47 TraesCS3B01G256500 chr5D 88.235 102 12 0 3767 3868 559070850 559070951 6.130000e-24 122.0
48 TraesCS3B01G256500 chr5A 85.079 315 39 6 988 1295 633977521 633977834 9.420000e-82 315.0
49 TraesCS3B01G256500 chr6B 89.820 167 13 4 3876 4041 127756217 127756380 1.270000e-50 211.0
50 TraesCS3B01G256500 chr2D 87.879 165 18 2 3870 4034 263844600 263844438 4.600000e-45 193.0
51 TraesCS3B01G256500 chr2D 84.615 104 14 2 3765 3867 580567619 580567517 7.980000e-18 102.0
52 TraesCS3B01G256500 chrUn 88.272 162 16 2 3874 4035 16723518 16723676 1.660000e-44 191.0
53 TraesCS3B01G256500 chr6A 87.975 158 19 0 3877 4034 39133081 39132924 2.140000e-43 187.0
54 TraesCS3B01G256500 chr6A 81.967 122 20 2 3748 3868 80685133 80685013 7.980000e-18 102.0
55 TraesCS3B01G256500 chr4B 89.720 107 11 0 3765 3871 270846535 270846429 2.190000e-28 137.0
56 TraesCS3B01G256500 chr7D 84.426 122 18 1 3748 3868 632647699 632647820 7.930000e-23 119.0
57 TraesCS3B01G256500 chr2B 86.139 101 12 2 3752 3851 501129685 501129586 1.720000e-19 108.0
58 TraesCS3B01G256500 chr2B 89.855 69 6 1 4034 4102 743735758 743735691 2.230000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G256500 chr3B 413990258 413994767 4509 False 8329.000000 8329 100.000000 1 4510 1 chr3B.!!$F1 4509
1 TraesCS3B01G256500 chr3A 426650872 426656498 5626 False 1860.333333 3550 89.508000 1 4316 3 chr3A.!!$F1 4315
2 TraesCS3B01G256500 chr3D 307566733 307570936 4203 True 1159.800000 1989 93.251200 1 4216 5 chr3D.!!$R2 4215
3 TraesCS3B01G256500 chr1D 2119160 2126354 7194 True 584.460000 1221 86.548800 987 3532 5 chr1D.!!$R6 2545
4 TraesCS3B01G256500 chr1B 1470757 1472844 2087 False 488.366667 852 87.205667 1655 3497 3 chr1B.!!$F2 1842
5 TraesCS3B01G256500 chr1B 1423791 1426022 2231 True 482.933333 843 85.832667 1664 3497 3 chr1B.!!$R1 1833
6 TraesCS3B01G256500 chr4D 3251393 3253547 2154 False 487.000000 782 82.734667 1035 3505 3 chr4D.!!$F2 2470
7 TraesCS3B01G256500 chr1A 1228928 1229976 1048 True 527.000000 782 85.522000 2322 3499 2 chr1A.!!$R2 1177
8 TraesCS3B01G256500 chr5B 636895522 636896552 1030 False 734.000000 734 79.852000 2009 3080 1 chr5B.!!$F2 1071
9 TraesCS3B01G256500 chr4A 602269796 602271225 1429 True 558.500000 710 81.642500 2032 3505 2 chr4A.!!$R2 1473
10 TraesCS3B01G256500 chr5D 506156069 506159908 3839 False 456.500000 532 89.020500 988 3510 2 chr5D.!!$F2 2522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
389 394 0.039035 TGGGGCGCTATCTGGTTTTT 59.961 50.0 7.64 0.00 0.00 1.94 F
894 920 0.173481 ATCACCACACCACTCGATCG 59.827 55.0 9.36 9.36 0.00 3.69 F
1382 4653 0.383949 TGCCTTGGAAACTTCGTTGC 59.616 50.0 0.00 0.00 0.00 4.17 F
2903 8988 0.730155 GCATCACAACCGACGACGTA 60.730 55.0 0.00 0.00 37.88 3.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2265 8278 0.737219 GCCAGTCTGCCATGTCAATC 59.263 55.0 0.00 0.00 0.00 2.67 R
2292 8308 1.059584 TTTGTCACTCCCTGGAGCCA 61.060 55.0 13.15 5.08 45.54 4.75 R
3142 9307 0.527817 CTCCGTCGGCTTGTATGTCC 60.528 60.0 6.34 0.00 0.00 4.02 R
4004 11669 0.035630 CTCAAGTTGAGCTCCCTGGG 60.036 60.0 19.55 6.33 37.72 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 5.589452 AGATCTGCATTCACTTGATCTTTCC 59.411 40.000 6.56 0.00 40.34 3.13
102 103 1.918609 CAGCGTAAACGGAAGACTAGC 59.081 52.381 4.49 0.00 40.23 3.42
103 104 1.817447 AGCGTAAACGGAAGACTAGCT 59.183 47.619 4.49 0.00 40.23 3.32
105 106 3.631227 AGCGTAAACGGAAGACTAGCTAT 59.369 43.478 4.49 0.00 40.23 2.97
128 129 1.754234 GATGACATGGCCGGCCTTT 60.754 57.895 43.34 29.13 36.94 3.11
266 267 7.783596 CGATAGGGTTAGGATTAGGTATATGGT 59.216 40.741 0.00 0.00 0.00 3.55
291 292 1.920734 ATGTCCCTGGCCATGCGTTA 61.921 55.000 5.51 0.00 0.00 3.18
319 320 6.745159 TGTAATTTCTAATTTGCAGCGGTA 57.255 33.333 0.00 0.00 0.00 4.02
320 321 7.328277 TGTAATTTCTAATTTGCAGCGGTAT 57.672 32.000 0.00 0.00 0.00 2.73
321 322 7.192913 TGTAATTTCTAATTTGCAGCGGTATG 58.807 34.615 0.00 0.00 0.00 2.39
389 394 0.039035 TGGGGCGCTATCTGGTTTTT 59.961 50.000 7.64 0.00 0.00 1.94
454 459 0.802222 CATGACCACTCTACGTGCGG 60.802 60.000 0.00 0.00 42.42 5.69
550 559 2.286833 TCTTTCCGAAAGAAACACGCTG 59.713 45.455 19.21 0.00 44.10 5.18
762 784 1.553248 CCCGGACTGTAGAACCATCAA 59.447 52.381 0.73 0.00 0.00 2.57
774 796 0.779997 ACCATCAAGGAAACAGCCCT 59.220 50.000 0.00 0.00 41.22 5.19
778 800 1.607467 CAAGGAAACAGCCCTGGGG 60.607 63.158 16.03 4.75 33.55 4.96
809 831 5.417811 CCAAAAATGTGCACTATAATGGCA 58.582 37.500 19.41 0.00 34.70 4.92
869 891 7.335627 TCTTTTATATATAGCGGTGGAATGGG 58.664 38.462 0.00 0.00 0.00 4.00
891 917 0.317160 GTGATCACCACACCACTCGA 59.683 55.000 15.31 0.00 45.03 4.04
893 919 1.204704 TGATCACCACACCACTCGATC 59.795 52.381 0.00 0.00 0.00 3.69
894 920 0.173481 ATCACCACACCACTCGATCG 59.827 55.000 9.36 9.36 0.00 3.69
984 1010 4.785453 CCTGCTCCGGCCTGTTCC 62.785 72.222 0.00 0.00 37.74 3.62
1315 4567 5.769162 ACGTCTCCTAGTACTTCTCTTGTTT 59.231 40.000 0.00 0.00 0.00 2.83
1321 4573 7.368833 TCCTAGTACTTCTCTTGTTTTCTTCG 58.631 38.462 0.00 0.00 0.00 3.79
1326 4578 6.830114 ACTTCTCTTGTTTTCTTCGTACTG 57.170 37.500 0.00 0.00 0.00 2.74
1378 4649 1.407258 TGGTTTGCCTTGGAAACTTCG 59.593 47.619 10.35 0.00 42.14 3.79
1382 4653 0.383949 TGCCTTGGAAACTTCGTTGC 59.616 50.000 0.00 0.00 0.00 4.17
1432 4703 4.889409 TGTTTCCAAGAGCAGATTCAGTTT 59.111 37.500 0.00 0.00 0.00 2.66
1646 5192 8.005388 ACACTCAAGGTATCTTAGCTATAGGAA 58.995 37.037 1.04 0.00 35.05 3.36
1715 5320 3.084786 GCATCCAAGGCCATATTCCTAC 58.915 50.000 5.01 0.00 32.65 3.18
2245 8242 4.495422 TCGAGAAGCTCAAGGTGATTTAC 58.505 43.478 0.00 0.00 0.00 2.01
2247 8244 4.932200 CGAGAAGCTCAAGGTGATTTACTT 59.068 41.667 0.00 0.00 0.00 2.24
2292 8308 3.577389 GGCAGACTGGCATAGGTTT 57.423 52.632 23.18 0.00 43.14 3.27
2423 8463 1.217585 CGGCATGCGAGGTAGATGTG 61.218 60.000 12.44 0.00 0.00 3.21
2608 8648 8.110271 TCTCTGTCTCTGATTAGTCTCCTTTTA 58.890 37.037 0.00 0.00 0.00 1.52
2638 8706 4.780275 TCGATCAATGGTGCAAATTTGA 57.220 36.364 22.31 4.41 33.06 2.69
2643 8711 6.400303 CGATCAATGGTGCAAATTTGAGTTTC 60.400 38.462 22.31 4.16 32.13 2.78
2683 8751 4.118410 GCAGACTCTGTCCTGATACATTG 58.882 47.826 7.89 0.00 33.43 2.82
2903 8988 0.730155 GCATCACAACCGACGACGTA 60.730 55.000 0.00 0.00 37.88 3.57
3095 9260 2.421424 GAGAATTGTGACCATGGTGCTC 59.579 50.000 25.52 14.64 0.00 4.26
3461 9635 2.115266 CCCTTCACCGTTGGCCTT 59.885 61.111 3.32 0.00 0.00 4.35
3510 9684 2.399916 GCTCAAGAGGCTTCACTGAT 57.600 50.000 0.00 0.00 0.00 2.90
3619 9793 1.334960 CGTGTAAAAGGCCTGCTTGTG 60.335 52.381 5.69 0.00 0.00 3.33
3620 9794 1.681264 GTGTAAAAGGCCTGCTTGTGT 59.319 47.619 5.69 0.00 0.00 3.72
3743 9918 8.475331 TTTTTAACCATGCGAAACACTAAAAA 57.525 26.923 0.00 0.00 0.00 1.94
3832 11497 2.715749 AATTGCATCGAGGTCCATGA 57.284 45.000 0.00 0.00 0.00 3.07
3838 11503 1.208052 CATCGAGGTCCATGAACCACT 59.792 52.381 3.09 0.00 42.12 4.00
3871 11536 3.175240 CCGCGAGAACGAGCAGTG 61.175 66.667 8.23 0.00 42.66 3.66
3872 11537 2.429236 CGCGAGAACGAGCAGTGT 60.429 61.111 0.00 0.00 42.66 3.55
3873 11538 2.710971 CGCGAGAACGAGCAGTGTG 61.711 63.158 0.00 0.00 42.66 3.82
3874 11539 1.371758 GCGAGAACGAGCAGTGTGA 60.372 57.895 0.00 0.00 42.66 3.58
3875 11540 1.609840 GCGAGAACGAGCAGTGTGAC 61.610 60.000 0.00 0.00 42.66 3.67
3876 11541 1.004277 CGAGAACGAGCAGTGTGACC 61.004 60.000 0.00 0.00 42.66 4.02
3877 11542 0.315568 GAGAACGAGCAGTGTGACCT 59.684 55.000 0.00 0.00 0.00 3.85
3878 11543 1.540267 GAGAACGAGCAGTGTGACCTA 59.460 52.381 0.00 0.00 0.00 3.08
3879 11544 1.542030 AGAACGAGCAGTGTGACCTAG 59.458 52.381 0.00 0.00 0.00 3.02
3880 11545 1.540267 GAACGAGCAGTGTGACCTAGA 59.460 52.381 0.00 0.00 0.00 2.43
3881 11546 1.169577 ACGAGCAGTGTGACCTAGAG 58.830 55.000 0.00 0.00 0.00 2.43
3882 11547 1.271434 ACGAGCAGTGTGACCTAGAGA 60.271 52.381 0.00 0.00 0.00 3.10
3883 11548 1.400142 CGAGCAGTGTGACCTAGAGAG 59.600 57.143 0.00 0.00 0.00 3.20
3884 11549 2.717390 GAGCAGTGTGACCTAGAGAGA 58.283 52.381 0.00 0.00 0.00 3.10
3885 11550 3.085533 GAGCAGTGTGACCTAGAGAGAA 58.914 50.000 0.00 0.00 0.00 2.87
3886 11551 3.501349 AGCAGTGTGACCTAGAGAGAAA 58.499 45.455 0.00 0.00 0.00 2.52
3887 11552 3.898123 AGCAGTGTGACCTAGAGAGAAAA 59.102 43.478 0.00 0.00 0.00 2.29
3888 11553 4.530161 AGCAGTGTGACCTAGAGAGAAAAT 59.470 41.667 0.00 0.00 0.00 1.82
3889 11554 4.629200 GCAGTGTGACCTAGAGAGAAAATG 59.371 45.833 0.00 0.00 0.00 2.32
3890 11555 5.567623 GCAGTGTGACCTAGAGAGAAAATGA 60.568 44.000 0.00 0.00 0.00 2.57
3891 11556 5.866633 CAGTGTGACCTAGAGAGAAAATGAC 59.133 44.000 0.00 0.00 0.00 3.06
3892 11557 5.046950 AGTGTGACCTAGAGAGAAAATGACC 60.047 44.000 0.00 0.00 0.00 4.02
3893 11558 4.838423 TGTGACCTAGAGAGAAAATGACCA 59.162 41.667 0.00 0.00 0.00 4.02
3894 11559 5.047021 TGTGACCTAGAGAGAAAATGACCAG 60.047 44.000 0.00 0.00 0.00 4.00
3895 11560 4.467795 TGACCTAGAGAGAAAATGACCAGG 59.532 45.833 0.00 0.00 0.00 4.45
3896 11561 4.430441 ACCTAGAGAGAAAATGACCAGGT 58.570 43.478 0.00 0.00 0.00 4.00
3897 11562 4.223923 ACCTAGAGAGAAAATGACCAGGTG 59.776 45.833 0.00 0.00 32.75 4.00
3898 11563 4.223923 CCTAGAGAGAAAATGACCAGGTGT 59.776 45.833 0.00 0.00 0.00 4.16
3899 11564 4.278975 AGAGAGAAAATGACCAGGTGTC 57.721 45.455 0.00 0.00 44.72 3.67
3900 11565 3.008485 AGAGAGAAAATGACCAGGTGTCC 59.992 47.826 0.00 0.00 43.78 4.02
3901 11566 2.982488 AGAGAAAATGACCAGGTGTCCT 59.018 45.455 0.00 0.00 43.78 3.85
3902 11567 4.168101 AGAGAAAATGACCAGGTGTCCTA 58.832 43.478 0.00 0.00 43.78 2.94
3903 11568 4.223923 AGAGAAAATGACCAGGTGTCCTAG 59.776 45.833 0.00 0.00 43.78 3.02
3904 11569 2.789409 AAATGACCAGGTGTCCTAGC 57.211 50.000 0.00 0.00 43.78 3.42
3905 11570 1.656587 AATGACCAGGTGTCCTAGCA 58.343 50.000 0.00 0.00 43.78 3.49
3906 11571 1.885049 ATGACCAGGTGTCCTAGCAT 58.115 50.000 0.00 0.00 43.78 3.79
3907 11572 2.543037 TGACCAGGTGTCCTAGCATA 57.457 50.000 0.00 0.00 43.78 3.14
3908 11573 3.046283 TGACCAGGTGTCCTAGCATAT 57.954 47.619 0.00 0.00 43.78 1.78
3909 11574 2.700371 TGACCAGGTGTCCTAGCATATG 59.300 50.000 0.00 0.00 43.78 1.78
3910 11575 2.965831 GACCAGGTGTCCTAGCATATGA 59.034 50.000 6.97 0.00 38.09 2.15
3911 11576 3.580458 GACCAGGTGTCCTAGCATATGAT 59.420 47.826 6.97 1.82 38.09 2.45
3912 11577 3.580458 ACCAGGTGTCCTAGCATATGATC 59.420 47.826 6.97 0.00 29.64 2.92
3913 11578 3.580022 CCAGGTGTCCTAGCATATGATCA 59.420 47.826 6.97 0.00 29.64 2.92
3914 11579 4.562347 CCAGGTGTCCTAGCATATGATCAC 60.562 50.000 6.97 4.44 29.64 3.06
3915 11580 4.282957 CAGGTGTCCTAGCATATGATCACT 59.717 45.833 6.97 0.00 29.64 3.41
3916 11581 4.526262 AGGTGTCCTAGCATATGATCACTC 59.474 45.833 6.97 0.00 28.47 3.51
3917 11582 4.281941 GGTGTCCTAGCATATGATCACTCA 59.718 45.833 6.97 0.00 35.41 3.41
3918 11583 5.046735 GGTGTCCTAGCATATGATCACTCAT 60.047 44.000 6.97 0.00 44.39 2.90
3919 11584 6.153510 GGTGTCCTAGCATATGATCACTCATA 59.846 42.308 6.97 0.00 45.91 2.15
3946 11611 9.494055 TTTTCCATTTAAATATGGGGTATCACA 57.506 29.630 7.78 0.00 44.32 3.58
3947 11612 8.472007 TTCCATTTAAATATGGGGTATCACAC 57.528 34.615 7.78 0.00 44.32 3.82
3948 11613 7.587258 TCCATTTAAATATGGGGTATCACACA 58.413 34.615 7.78 0.00 44.32 3.72
3949 11614 7.504238 TCCATTTAAATATGGGGTATCACACAC 59.496 37.037 7.78 0.00 44.32 3.82
3950 11615 7.505585 CCATTTAAATATGGGGTATCACACACT 59.494 37.037 0.00 0.00 41.18 3.55
3951 11616 9.567776 CATTTAAATATGGGGTATCACACACTA 57.432 33.333 0.00 0.00 0.00 2.74
3992 11657 3.904136 AAGAAAACATCTTGCACTCGG 57.096 42.857 0.00 0.00 46.71 4.63
3993 11658 2.851195 AGAAAACATCTTGCACTCGGT 58.149 42.857 0.00 0.00 33.39 4.69
3994 11659 2.549754 AGAAAACATCTTGCACTCGGTG 59.450 45.455 0.00 0.25 33.39 4.94
3995 11660 1.967319 AAACATCTTGCACTCGGTGT 58.033 45.000 6.02 0.00 35.75 4.16
3996 11661 1.512926 AACATCTTGCACTCGGTGTC 58.487 50.000 6.02 0.56 35.75 3.67
3997 11662 0.392706 ACATCTTGCACTCGGTGTCA 59.607 50.000 6.02 2.71 35.75 3.58
3998 11663 1.002430 ACATCTTGCACTCGGTGTCAT 59.998 47.619 6.02 0.00 35.75 3.06
3999 11664 1.395954 CATCTTGCACTCGGTGTCATG 59.604 52.381 6.02 0.00 35.75 3.07
4000 11665 0.392706 TCTTGCACTCGGTGTCATGT 59.607 50.000 6.02 0.00 35.75 3.21
4001 11666 0.514255 CTTGCACTCGGTGTCATGTG 59.486 55.000 6.02 0.00 35.75 3.21
4002 11667 2.863153 GCACTCGGTGTCATGTGC 59.137 61.111 0.00 0.00 46.66 4.57
4003 11668 4.359475 CACTCGGTGTCATGTGCA 57.641 55.556 0.00 0.00 0.00 4.57
4004 11669 1.862123 CACTCGGTGTCATGTGCAC 59.138 57.895 10.75 10.75 36.22 4.57
4009 11674 3.672293 GTGTCATGTGCACCCAGG 58.328 61.111 15.69 0.00 0.00 4.45
4010 11675 1.973281 GTGTCATGTGCACCCAGGG 60.973 63.158 15.69 2.85 0.00 4.45
4011 11676 2.152729 TGTCATGTGCACCCAGGGA 61.153 57.895 14.54 1.58 0.00 4.20
4012 11677 1.377725 GTCATGTGCACCCAGGGAG 60.378 63.158 14.54 5.21 0.00 4.30
4013 11678 2.753043 CATGTGCACCCAGGGAGC 60.753 66.667 20.71 20.71 39.68 4.70
4014 11679 2.937689 ATGTGCACCCAGGGAGCT 60.938 61.111 26.57 5.90 39.93 4.09
4015 11680 2.976490 ATGTGCACCCAGGGAGCTC 61.976 63.158 26.57 23.15 39.93 4.09
4016 11681 3.640407 GTGCACCCAGGGAGCTCA 61.640 66.667 26.57 6.65 39.93 4.26
4017 11682 2.853542 TGCACCCAGGGAGCTCAA 60.854 61.111 26.57 5.90 39.93 3.02
4018 11683 2.360475 GCACCCAGGGAGCTCAAC 60.360 66.667 20.27 7.85 36.40 3.18
4019 11684 2.900106 GCACCCAGGGAGCTCAACT 61.900 63.158 20.27 10.28 36.40 3.16
4020 11685 1.763770 CACCCAGGGAGCTCAACTT 59.236 57.895 14.54 0.00 0.00 2.66
4021 11686 0.607489 CACCCAGGGAGCTCAACTTG 60.607 60.000 14.54 8.74 0.00 3.16
4022 11687 0.768221 ACCCAGGGAGCTCAACTTGA 60.768 55.000 14.54 0.00 0.00 3.02
4023 11688 0.035630 CCCAGGGAGCTCAACTTGAG 60.036 60.000 17.19 13.68 46.90 3.02
4024 11689 0.689623 CCAGGGAGCTCAACTTGAGT 59.310 55.000 17.19 7.02 45.94 3.41
4025 11690 1.902508 CCAGGGAGCTCAACTTGAGTA 59.097 52.381 17.19 0.00 45.94 2.59
4026 11691 2.354203 CCAGGGAGCTCAACTTGAGTAC 60.354 54.545 17.19 12.57 45.94 2.73
4027 11692 2.300152 CAGGGAGCTCAACTTGAGTACA 59.700 50.000 17.19 0.00 45.94 2.90
4028 11693 2.300437 AGGGAGCTCAACTTGAGTACAC 59.700 50.000 17.19 13.58 45.94 2.90
4029 11694 2.613223 GGGAGCTCAACTTGAGTACACC 60.613 54.545 17.19 14.97 45.94 4.16
4030 11695 2.613223 GGAGCTCAACTTGAGTACACCC 60.613 54.545 17.19 9.74 45.94 4.61
4031 11696 1.348036 AGCTCAACTTGAGTACACCCC 59.652 52.381 18.16 2.28 45.94 4.95
4032 11697 1.348036 GCTCAACTTGAGTACACCCCT 59.652 52.381 18.16 0.00 45.94 4.79
4033 11698 2.872038 GCTCAACTTGAGTACACCCCTG 60.872 54.545 18.16 0.00 45.94 4.45
4034 11699 2.632996 CTCAACTTGAGTACACCCCTGA 59.367 50.000 10.27 0.00 39.58 3.86
4035 11700 2.632996 TCAACTTGAGTACACCCCTGAG 59.367 50.000 0.00 0.00 0.00 3.35
4036 11701 2.632996 CAACTTGAGTACACCCCTGAGA 59.367 50.000 0.00 0.00 0.00 3.27
4037 11702 2.249139 ACTTGAGTACACCCCTGAGAC 58.751 52.381 0.00 0.00 0.00 3.36
4038 11703 1.202582 CTTGAGTACACCCCTGAGACG 59.797 57.143 0.00 0.00 0.00 4.18
4039 11704 0.402887 TGAGTACACCCCTGAGACGA 59.597 55.000 0.00 0.00 0.00 4.20
4040 11705 1.096416 GAGTACACCCCTGAGACGAG 58.904 60.000 0.00 0.00 0.00 4.18
4041 11706 0.966370 AGTACACCCCTGAGACGAGC 60.966 60.000 0.00 0.00 0.00 5.03
4042 11707 1.681327 TACACCCCTGAGACGAGCC 60.681 63.158 0.00 0.00 0.00 4.70
4043 11708 4.135153 CACCCCTGAGACGAGCCG 62.135 72.222 0.00 0.00 0.00 5.52
4044 11709 4.680537 ACCCCTGAGACGAGCCGT 62.681 66.667 0.00 0.00 45.10 5.68
4102 11767 2.341257 CTTGACCTTGTCGATGACAGG 58.659 52.381 11.41 11.41 43.69 4.00
4150 11815 3.186909 CATACACATACACTCCACCACG 58.813 50.000 0.00 0.00 0.00 4.94
4187 11852 3.748048 CGTGGAGTTTCAAGATGTGTCAT 59.252 43.478 0.00 0.00 0.00 3.06
4191 11856 4.379186 GGAGTTTCAAGATGTGTCATGCTG 60.379 45.833 0.00 0.00 0.00 4.41
4193 11858 4.581824 AGTTTCAAGATGTGTCATGCTGTT 59.418 37.500 0.00 0.00 0.00 3.16
4228 11893 9.747898 TTAATGTCACCTACCATTGAAGTAATT 57.252 29.630 0.00 0.00 33.54 1.40
4238 11903 9.490663 CTACCATTGAAGTAATTCGCTTAAAAG 57.509 33.333 0.00 0.00 0.00 2.27
4239 11904 7.882179 ACCATTGAAGTAATTCGCTTAAAAGT 58.118 30.769 0.00 0.00 0.00 2.66
4240 11905 8.021396 ACCATTGAAGTAATTCGCTTAAAAGTC 58.979 33.333 0.00 0.00 0.00 3.01
4241 11906 7.484959 CCATTGAAGTAATTCGCTTAAAAGTCC 59.515 37.037 0.00 0.00 0.00 3.85
4294 11965 1.278127 GGGTTTGATCTCTCGTTGGGA 59.722 52.381 0.00 0.00 0.00 4.37
4297 11968 4.372656 GGTTTGATCTCTCGTTGGGATAG 58.627 47.826 0.00 0.00 0.00 2.08
4301 11972 3.315470 TGATCTCTCGTTGGGATAGAACG 59.685 47.826 0.00 0.00 45.98 3.95
4316 11987 3.067721 AGAACGACGCATCTTAGCTAC 57.932 47.619 0.00 0.00 0.00 3.58
4317 11988 2.117910 GAACGACGCATCTTAGCTACC 58.882 52.381 0.00 0.00 0.00 3.18
4318 11989 1.100510 ACGACGCATCTTAGCTACCA 58.899 50.000 0.00 0.00 0.00 3.25
4319 11990 1.475280 ACGACGCATCTTAGCTACCAA 59.525 47.619 0.00 0.00 0.00 3.67
4320 11991 1.852895 CGACGCATCTTAGCTACCAAC 59.147 52.381 0.00 0.00 0.00 3.77
4321 11992 2.202566 GACGCATCTTAGCTACCAACC 58.797 52.381 0.00 0.00 0.00 3.77
4322 11993 1.553248 ACGCATCTTAGCTACCAACCA 59.447 47.619 0.00 0.00 0.00 3.67
4323 11994 2.170607 ACGCATCTTAGCTACCAACCAT 59.829 45.455 0.00 0.00 0.00 3.55
4324 11995 2.545526 CGCATCTTAGCTACCAACCATG 59.454 50.000 0.00 0.00 0.00 3.66
4339 12010 2.849880 CCATGGCTTGGTTCGTAATG 57.150 50.000 11.13 0.00 40.99 1.90
4340 12011 2.364632 CCATGGCTTGGTTCGTAATGA 58.635 47.619 11.13 0.00 40.99 2.57
4341 12012 2.951642 CCATGGCTTGGTTCGTAATGAT 59.048 45.455 11.13 0.00 40.99 2.45
4342 12013 3.003689 CCATGGCTTGGTTCGTAATGATC 59.996 47.826 11.13 0.00 40.99 2.92
4343 12014 3.342377 TGGCTTGGTTCGTAATGATCA 57.658 42.857 0.00 0.00 0.00 2.92
4344 12015 3.270027 TGGCTTGGTTCGTAATGATCAG 58.730 45.455 0.09 0.00 0.00 2.90
4345 12016 3.055458 TGGCTTGGTTCGTAATGATCAGA 60.055 43.478 0.09 0.00 0.00 3.27
4346 12017 3.938963 GGCTTGGTTCGTAATGATCAGAA 59.061 43.478 0.09 0.00 0.00 3.02
4347 12018 4.201822 GGCTTGGTTCGTAATGATCAGAAC 60.202 45.833 14.21 14.21 41.40 3.01
4348 12019 4.631813 GCTTGGTTCGTAATGATCAGAACT 59.368 41.667 19.25 1.35 41.72 3.01
4349 12020 5.446473 GCTTGGTTCGTAATGATCAGAACTG 60.446 44.000 19.25 13.16 41.72 3.16
4350 12021 5.147330 TGGTTCGTAATGATCAGAACTGT 57.853 39.130 19.25 0.00 41.72 3.55
4351 12022 5.547465 TGGTTCGTAATGATCAGAACTGTT 58.453 37.500 19.25 0.00 41.72 3.16
4352 12023 6.693466 TGGTTCGTAATGATCAGAACTGTTA 58.307 36.000 19.25 3.52 41.72 2.41
4353 12024 7.327975 TGGTTCGTAATGATCAGAACTGTTAT 58.672 34.615 19.25 0.00 41.72 1.89
4354 12025 7.822334 TGGTTCGTAATGATCAGAACTGTTATT 59.178 33.333 19.25 2.52 41.72 1.40
4355 12026 8.116753 GGTTCGTAATGATCAGAACTGTTATTG 58.883 37.037 19.25 0.00 41.72 1.90
4356 12027 7.234187 TCGTAATGATCAGAACTGTTATTGC 57.766 36.000 0.09 4.80 0.00 3.56
4357 12028 6.257849 TCGTAATGATCAGAACTGTTATTGCC 59.742 38.462 0.09 0.00 0.00 4.52
4358 12029 5.490139 AATGATCAGAACTGTTATTGCCG 57.510 39.130 0.09 0.00 0.00 5.69
4359 12030 3.937814 TGATCAGAACTGTTATTGCCGT 58.062 40.909 0.00 0.00 0.00 5.68
4360 12031 3.684305 TGATCAGAACTGTTATTGCCGTG 59.316 43.478 0.00 0.00 0.00 4.94
4361 12032 2.422597 TCAGAACTGTTATTGCCGTGG 58.577 47.619 0.00 0.00 0.00 4.94
4362 12033 2.037902 TCAGAACTGTTATTGCCGTGGA 59.962 45.455 0.00 0.00 0.00 4.02
4363 12034 2.811431 CAGAACTGTTATTGCCGTGGAA 59.189 45.455 0.00 0.00 0.00 3.53
4364 12035 3.252215 CAGAACTGTTATTGCCGTGGAAA 59.748 43.478 0.00 0.00 0.00 3.13
4365 12036 3.252458 AGAACTGTTATTGCCGTGGAAAC 59.748 43.478 0.00 0.00 0.00 2.78
4366 12037 2.577700 ACTGTTATTGCCGTGGAAACA 58.422 42.857 0.00 0.00 38.70 2.83
4367 12038 2.952978 ACTGTTATTGCCGTGGAAACAA 59.047 40.909 0.00 0.00 46.06 2.83
4368 12039 3.243267 ACTGTTATTGCCGTGGAAACAAC 60.243 43.478 0.00 0.00 46.06 3.32
4369 12040 2.688446 TGTTATTGCCGTGGAAACAACA 59.312 40.909 0.00 0.00 46.06 3.33
4370 12041 3.130516 TGTTATTGCCGTGGAAACAACAA 59.869 39.130 0.86 0.00 46.06 2.83
4371 12042 2.969628 ATTGCCGTGGAAACAACAAA 57.030 40.000 0.00 0.00 46.06 2.83
4372 12043 2.743636 TTGCCGTGGAAACAACAAAA 57.256 40.000 0.00 0.00 46.06 2.44
4373 12044 2.285827 TGCCGTGGAAACAACAAAAG 57.714 45.000 0.00 0.00 46.06 2.27
4374 12045 1.819288 TGCCGTGGAAACAACAAAAGA 59.181 42.857 0.00 0.00 46.06 2.52
4375 12046 2.159310 TGCCGTGGAAACAACAAAAGAG 60.159 45.455 0.00 0.00 46.06 2.85
4376 12047 2.159296 GCCGTGGAAACAACAAAAGAGT 60.159 45.455 0.00 0.00 46.06 3.24
4377 12048 3.065648 GCCGTGGAAACAACAAAAGAGTA 59.934 43.478 0.00 0.00 46.06 2.59
4378 12049 4.788521 GCCGTGGAAACAACAAAAGAGTAG 60.789 45.833 0.00 0.00 46.06 2.57
4379 12050 4.573201 CCGTGGAAACAACAAAAGAGTAGA 59.427 41.667 0.00 0.00 46.06 2.59
4380 12051 5.277345 CCGTGGAAACAACAAAAGAGTAGAG 60.277 44.000 0.00 0.00 46.06 2.43
4381 12052 5.277345 CGTGGAAACAACAAAAGAGTAGAGG 60.277 44.000 0.00 0.00 46.06 3.69
4382 12053 5.008712 GTGGAAACAACAAAAGAGTAGAGGG 59.991 44.000 0.00 0.00 46.06 4.30
4383 12054 5.131067 GGAAACAACAAAAGAGTAGAGGGT 58.869 41.667 0.00 0.00 0.00 4.34
4384 12055 6.126710 TGGAAACAACAAAAGAGTAGAGGGTA 60.127 38.462 0.00 0.00 37.44 3.69
4385 12056 6.940867 GGAAACAACAAAAGAGTAGAGGGTAT 59.059 38.462 0.00 0.00 0.00 2.73
4386 12057 7.094762 GGAAACAACAAAAGAGTAGAGGGTATG 60.095 40.741 0.00 0.00 0.00 2.39
4387 12058 6.435292 ACAACAAAAGAGTAGAGGGTATGT 57.565 37.500 0.00 0.00 0.00 2.29
4388 12059 6.465084 ACAACAAAAGAGTAGAGGGTATGTC 58.535 40.000 0.00 0.00 0.00 3.06
4389 12060 5.326200 ACAAAAGAGTAGAGGGTATGTCG 57.674 43.478 0.00 0.00 0.00 4.35
4390 12061 4.771054 ACAAAAGAGTAGAGGGTATGTCGT 59.229 41.667 0.00 0.00 0.00 4.34
4391 12062 5.245526 ACAAAAGAGTAGAGGGTATGTCGTT 59.754 40.000 0.00 0.00 0.00 3.85
4392 12063 4.985538 AAGAGTAGAGGGTATGTCGTTG 57.014 45.455 0.00 0.00 0.00 4.10
4393 12064 3.965694 AGAGTAGAGGGTATGTCGTTGT 58.034 45.455 0.00 0.00 0.00 3.32
4394 12065 4.342359 AGAGTAGAGGGTATGTCGTTGTT 58.658 43.478 0.00 0.00 0.00 2.83
4395 12066 5.503927 AGAGTAGAGGGTATGTCGTTGTTA 58.496 41.667 0.00 0.00 0.00 2.41
4396 12067 5.589452 AGAGTAGAGGGTATGTCGTTGTTAG 59.411 44.000 0.00 0.00 0.00 2.34
4397 12068 5.259632 AGTAGAGGGTATGTCGTTGTTAGT 58.740 41.667 0.00 0.00 0.00 2.24
4398 12069 6.418101 AGTAGAGGGTATGTCGTTGTTAGTA 58.582 40.000 0.00 0.00 0.00 1.82
4399 12070 5.573337 AGAGGGTATGTCGTTGTTAGTAC 57.427 43.478 0.00 0.00 0.00 2.73
4400 12071 5.259632 AGAGGGTATGTCGTTGTTAGTACT 58.740 41.667 0.00 0.00 0.00 2.73
4401 12072 5.356470 AGAGGGTATGTCGTTGTTAGTACTC 59.644 44.000 0.00 0.00 0.00 2.59
4402 12073 5.012239 AGGGTATGTCGTTGTTAGTACTCA 58.988 41.667 0.00 0.00 0.00 3.41
4403 12074 5.477984 AGGGTATGTCGTTGTTAGTACTCAA 59.522 40.000 0.00 0.00 0.00 3.02
4404 12075 5.803967 GGGTATGTCGTTGTTAGTACTCAAG 59.196 44.000 0.00 0.00 0.00 3.02
4405 12076 6.349611 GGGTATGTCGTTGTTAGTACTCAAGA 60.350 42.308 0.00 0.00 0.00 3.02
4406 12077 7.256286 GGTATGTCGTTGTTAGTACTCAAGAT 58.744 38.462 0.00 0.00 0.00 2.40
4407 12078 7.220300 GGTATGTCGTTGTTAGTACTCAAGATG 59.780 40.741 0.00 0.00 0.00 2.90
4408 12079 6.321848 TGTCGTTGTTAGTACTCAAGATGA 57.678 37.500 0.00 0.00 0.00 2.92
4409 12080 6.741109 TGTCGTTGTTAGTACTCAAGATGAA 58.259 36.000 0.00 0.00 0.00 2.57
4410 12081 7.204604 TGTCGTTGTTAGTACTCAAGATGAAA 58.795 34.615 0.00 0.00 0.00 2.69
4411 12082 7.707464 TGTCGTTGTTAGTACTCAAGATGAAAA 59.293 33.333 0.00 0.00 0.00 2.29
4412 12083 8.709646 GTCGTTGTTAGTACTCAAGATGAAAAT 58.290 33.333 0.00 0.00 0.00 1.82
4413 12084 9.268268 TCGTTGTTAGTACTCAAGATGAAAATT 57.732 29.630 0.00 0.00 0.00 1.82
4417 12088 9.719355 TGTTAGTACTCAAGATGAAAATTAGCA 57.281 29.630 0.00 0.00 0.00 3.49
4419 12090 7.856145 AGTACTCAAGATGAAAATTAGCAGG 57.144 36.000 0.00 0.00 0.00 4.85
4420 12091 6.825721 AGTACTCAAGATGAAAATTAGCAGGG 59.174 38.462 0.00 0.00 0.00 4.45
4421 12092 4.400567 ACTCAAGATGAAAATTAGCAGGGC 59.599 41.667 0.00 0.00 0.00 5.19
4422 12093 3.701040 TCAAGATGAAAATTAGCAGGGCC 59.299 43.478 0.00 0.00 0.00 5.80
4423 12094 2.670939 AGATGAAAATTAGCAGGGCCC 58.329 47.619 16.46 16.46 0.00 5.80
4424 12095 1.338020 GATGAAAATTAGCAGGGCCCG 59.662 52.381 18.44 13.02 0.00 6.13
4425 12096 0.039035 TGAAAATTAGCAGGGCCCGT 59.961 50.000 18.44 7.98 0.00 5.28
4426 12097 1.282447 TGAAAATTAGCAGGGCCCGTA 59.718 47.619 18.44 6.81 0.00 4.02
4427 12098 1.674441 GAAAATTAGCAGGGCCCGTAC 59.326 52.381 18.44 10.17 0.00 3.67
4428 12099 0.463116 AAATTAGCAGGGCCCGTACG 60.463 55.000 18.44 8.69 0.00 3.67
4429 12100 1.332144 AATTAGCAGGGCCCGTACGA 61.332 55.000 18.44 4.15 0.00 3.43
4430 12101 1.332144 ATTAGCAGGGCCCGTACGAA 61.332 55.000 18.44 12.75 0.00 3.85
4431 12102 1.543065 TTAGCAGGGCCCGTACGAAA 61.543 55.000 18.44 4.60 0.00 3.46
4432 12103 1.952102 TAGCAGGGCCCGTACGAAAG 61.952 60.000 18.44 6.18 0.00 2.62
4433 12104 2.975536 CAGGGCCCGTACGAAAGA 59.024 61.111 18.44 0.00 0.00 2.52
4434 12105 1.447314 CAGGGCCCGTACGAAAGAC 60.447 63.158 18.44 7.05 0.00 3.01
4435 12106 2.125391 GGGCCCGTACGAAAGACC 60.125 66.667 18.76 12.96 0.00 3.85
4436 12107 2.653087 GGGCCCGTACGAAAGACCT 61.653 63.158 18.76 0.00 0.00 3.85
4437 12108 1.294459 GGCCCGTACGAAAGACCTT 59.706 57.895 18.76 0.00 0.00 3.50
4438 12109 0.532115 GGCCCGTACGAAAGACCTTA 59.468 55.000 18.76 0.00 0.00 2.69
4439 12110 1.137675 GGCCCGTACGAAAGACCTTAT 59.862 52.381 18.76 0.00 0.00 1.73
4440 12111 2.362077 GGCCCGTACGAAAGACCTTATA 59.638 50.000 18.76 0.00 0.00 0.98
4441 12112 3.551659 GGCCCGTACGAAAGACCTTATAG 60.552 52.174 18.76 0.00 0.00 1.31
4442 12113 3.636381 CCCGTACGAAAGACCTTATAGC 58.364 50.000 18.76 0.00 0.00 2.97
4443 12114 3.294943 CCGTACGAAAGACCTTATAGCG 58.705 50.000 18.76 0.00 0.00 4.26
4444 12115 3.002656 CCGTACGAAAGACCTTATAGCGA 59.997 47.826 18.76 0.00 0.00 4.93
4445 12116 4.496341 CCGTACGAAAGACCTTATAGCGAA 60.496 45.833 18.76 0.00 0.00 4.70
4446 12117 5.030295 CGTACGAAAGACCTTATAGCGAAA 58.970 41.667 10.44 0.00 0.00 3.46
4447 12118 5.170981 CGTACGAAAGACCTTATAGCGAAAG 59.829 44.000 10.44 0.00 0.00 2.62
4448 12119 5.069501 ACGAAAGACCTTATAGCGAAAGT 57.930 39.130 0.00 0.00 0.00 2.66
4449 12120 5.100943 ACGAAAGACCTTATAGCGAAAGTC 58.899 41.667 0.00 0.00 0.00 3.01
4450 12121 5.100259 CGAAAGACCTTATAGCGAAAGTCA 58.900 41.667 0.00 0.00 0.00 3.41
4451 12122 5.004535 CGAAAGACCTTATAGCGAAAGTCAC 59.995 44.000 0.00 0.00 0.00 3.67
4452 12123 4.388378 AGACCTTATAGCGAAAGTCACC 57.612 45.455 0.00 0.00 0.00 4.02
4453 12124 3.767673 AGACCTTATAGCGAAAGTCACCA 59.232 43.478 0.00 0.00 0.00 4.17
4454 12125 4.406003 AGACCTTATAGCGAAAGTCACCAT 59.594 41.667 0.00 0.00 0.00 3.55
4455 12126 5.597182 AGACCTTATAGCGAAAGTCACCATA 59.403 40.000 0.00 0.00 0.00 2.74
4456 12127 6.267928 AGACCTTATAGCGAAAGTCACCATAT 59.732 38.462 0.00 0.00 0.00 1.78
4457 12128 6.223852 ACCTTATAGCGAAAGTCACCATATG 58.776 40.000 0.00 0.00 0.00 1.78
4458 12129 5.120830 CCTTATAGCGAAAGTCACCATATGC 59.879 44.000 0.00 0.00 0.00 3.14
4459 12130 2.698855 AGCGAAAGTCACCATATGCT 57.301 45.000 0.00 0.00 0.00 3.79
4460 12131 2.283298 AGCGAAAGTCACCATATGCTG 58.717 47.619 0.00 0.00 0.00 4.41
4461 12132 2.093500 AGCGAAAGTCACCATATGCTGA 60.093 45.455 0.00 0.00 0.00 4.26
4462 12133 2.030946 GCGAAAGTCACCATATGCTGAC 59.969 50.000 19.39 19.39 37.63 3.51
4463 12134 3.261580 CGAAAGTCACCATATGCTGACA 58.738 45.455 25.77 0.00 39.49 3.58
4464 12135 3.684305 CGAAAGTCACCATATGCTGACAA 59.316 43.478 25.77 0.00 39.49 3.18
4465 12136 4.201753 CGAAAGTCACCATATGCTGACAAG 60.202 45.833 25.77 13.80 39.49 3.16
4466 12137 3.272574 AGTCACCATATGCTGACAAGG 57.727 47.619 25.77 2.44 39.49 3.61
4467 12138 2.573462 AGTCACCATATGCTGACAAGGT 59.427 45.455 25.77 8.73 39.49 3.50
4468 12139 3.774766 AGTCACCATATGCTGACAAGGTA 59.225 43.478 25.77 0.00 39.49 3.08
4469 12140 4.122776 GTCACCATATGCTGACAAGGTAG 58.877 47.826 21.28 0.00 37.36 3.18
4470 12141 3.134623 TCACCATATGCTGACAAGGTAGG 59.865 47.826 0.00 0.00 30.92 3.18
4471 12142 2.158755 ACCATATGCTGACAAGGTAGGC 60.159 50.000 0.00 0.00 30.48 3.93
4472 12143 2.158769 CCATATGCTGACAAGGTAGGCA 60.159 50.000 0.00 0.00 37.32 4.75
4473 12144 2.691409 TATGCTGACAAGGTAGGCAC 57.309 50.000 0.00 0.00 35.72 5.01
4474 12145 0.692476 ATGCTGACAAGGTAGGCACA 59.308 50.000 0.00 0.00 35.72 4.57
4475 12146 0.692476 TGCTGACAAGGTAGGCACAT 59.308 50.000 0.00 0.00 0.00 3.21
4476 12147 1.339055 TGCTGACAAGGTAGGCACATC 60.339 52.381 0.00 0.00 0.00 3.06
4477 12148 1.645034 CTGACAAGGTAGGCACATCG 58.355 55.000 0.00 0.00 0.00 3.84
4478 12149 1.204704 CTGACAAGGTAGGCACATCGA 59.795 52.381 0.00 0.00 0.00 3.59
4479 12150 1.067142 TGACAAGGTAGGCACATCGAC 60.067 52.381 0.00 0.00 0.00 4.20
4480 12151 0.973632 ACAAGGTAGGCACATCGACA 59.026 50.000 0.00 0.00 0.00 4.35
4481 12152 1.555075 ACAAGGTAGGCACATCGACAT 59.445 47.619 0.00 0.00 0.00 3.06
4482 12153 2.027192 ACAAGGTAGGCACATCGACATT 60.027 45.455 0.00 0.00 0.00 2.71
4483 12154 3.009723 CAAGGTAGGCACATCGACATTT 58.990 45.455 0.00 0.00 0.00 2.32
4484 12155 3.350219 AGGTAGGCACATCGACATTTT 57.650 42.857 0.00 0.00 0.00 1.82
4485 12156 3.270877 AGGTAGGCACATCGACATTTTC 58.729 45.455 0.00 0.00 0.00 2.29
4486 12157 2.354821 GGTAGGCACATCGACATTTTCC 59.645 50.000 0.00 0.00 0.00 3.13
4487 12158 2.496899 AGGCACATCGACATTTTCCT 57.503 45.000 0.00 0.00 0.00 3.36
4488 12159 2.795329 AGGCACATCGACATTTTCCTT 58.205 42.857 0.00 0.00 0.00 3.36
4489 12160 3.157087 AGGCACATCGACATTTTCCTTT 58.843 40.909 0.00 0.00 0.00 3.11
4490 12161 3.573967 AGGCACATCGACATTTTCCTTTT 59.426 39.130 0.00 0.00 0.00 2.27
4491 12162 4.764823 AGGCACATCGACATTTTCCTTTTA 59.235 37.500 0.00 0.00 0.00 1.52
4492 12163 5.095490 GGCACATCGACATTTTCCTTTTAG 58.905 41.667 0.00 0.00 0.00 1.85
4493 12164 5.095490 GCACATCGACATTTTCCTTTTAGG 58.905 41.667 0.00 0.00 36.46 2.69
4494 12165 5.640732 CACATCGACATTTTCCTTTTAGGG 58.359 41.667 0.00 0.00 35.59 3.53
4495 12166 5.414454 CACATCGACATTTTCCTTTTAGGGA 59.586 40.000 0.00 0.00 35.59 4.20
4496 12167 6.007703 ACATCGACATTTTCCTTTTAGGGAA 58.992 36.000 0.00 0.00 42.86 3.97
4497 12168 6.492087 ACATCGACATTTTCCTTTTAGGGAAA 59.508 34.615 1.79 1.79 46.38 3.13
4507 12178 8.458951 TTTCCTTTTAGGGAAATAGTAGGACT 57.541 34.615 2.26 0.00 46.56 3.85
4508 12179 8.458951 TTCCTTTTAGGGAAATAGTAGGACTT 57.541 34.615 0.00 0.00 41.77 3.01
4509 12180 8.458951 TCCTTTTAGGGAAATAGTAGGACTTT 57.541 34.615 0.00 0.00 35.59 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 3.499048 ACGTACGTGTTTGCTCATCTAG 58.501 45.455 22.14 0.00 0.00 2.43
68 69 0.042361 ACGCTGATCGATCGTCGTAC 60.042 55.000 30.29 13.32 41.35 3.67
69 70 1.490621 TACGCTGATCGATCGTCGTA 58.509 50.000 30.67 30.67 41.35 3.43
71 72 1.443540 GTTTACGCTGATCGATCGTCG 59.556 52.381 26.75 26.75 41.67 5.12
74 75 0.770590 CCGTTTACGCTGATCGATCG 59.229 55.000 20.03 9.36 41.67 3.69
102 103 3.854666 CCGGCCATGTCATCTCTAATAG 58.145 50.000 2.24 0.00 0.00 1.73
103 104 2.028112 GCCGGCCATGTCATCTCTAATA 60.028 50.000 18.11 0.00 0.00 0.98
105 106 0.106708 GCCGGCCATGTCATCTCTAA 59.893 55.000 18.11 0.00 0.00 2.10
128 129 3.998672 GGGACGACCGGAGCACAA 61.999 66.667 9.46 0.00 36.97 3.33
247 248 7.620880 TGCATGACCATATACCTAATCCTAAC 58.379 38.462 0.00 0.00 0.00 2.34
266 267 1.940242 ATGGCCAGGGACATGCATGA 61.940 55.000 32.75 7.56 43.19 3.07
291 292 6.527722 CGCTGCAAATTAGAAATTACATGTGT 59.472 34.615 9.11 0.00 0.00 3.72
321 322 4.201822 GCAAGGAAAATATGTCTGGACGAC 60.202 45.833 0.00 0.00 43.14 4.34
362 367 1.436983 GATAGCGCCCCAAAACTCCG 61.437 60.000 2.29 0.00 0.00 4.63
389 394 0.620556 CTCTCCCTGGCTGGCTTTTA 59.379 55.000 4.64 0.00 0.00 1.52
454 459 1.026718 AGGTCATAAAGGTGCAGCGC 61.027 55.000 10.78 0.00 0.00 5.92
550 559 0.669318 TGGGTTTGCACTCGATCGAC 60.669 55.000 15.15 5.41 0.00 4.20
779 801 2.028733 GCACATTTTTGGCGCCCAG 61.029 57.895 26.77 9.63 33.81 4.45
780 802 2.030262 GCACATTTTTGGCGCCCA 59.970 55.556 26.77 11.12 0.00 5.36
782 804 0.038709 TAGTGCACATTTTTGGCGCC 60.039 50.000 22.73 22.73 38.76 6.53
784 806 4.503734 CCATTATAGTGCACATTTTTGGCG 59.496 41.667 21.04 0.00 0.00 5.69
785 807 4.270808 GCCATTATAGTGCACATTTTTGGC 59.729 41.667 26.50 26.50 39.11 4.52
828 850 2.702270 AAGATGGTGGAGGCCTTTTT 57.298 45.000 6.77 0.00 0.00 1.94
894 920 2.514164 GGGTGGGGGCGTAGGATAC 61.514 68.421 0.00 0.00 38.50 2.24
1013 4262 1.160137 CAGCTCCCGTGGAAAAGAAG 58.840 55.000 0.00 0.00 0.00 2.85
1195 4447 3.519930 GGACCTCGCCTCCTCGTC 61.520 72.222 0.00 0.00 0.00 4.20
1251 4503 4.657408 TGGAACAGCGGCATGGCA 62.657 61.111 20.37 0.00 34.64 4.92
1301 4553 7.096147 CCAGTACGAAGAAAACAAGAGAAGTAC 60.096 40.741 0.00 0.00 0.00 2.73
1302 4554 6.921857 CCAGTACGAAGAAAACAAGAGAAGTA 59.078 38.462 0.00 0.00 0.00 2.24
1303 4555 5.753921 CCAGTACGAAGAAAACAAGAGAAGT 59.246 40.000 0.00 0.00 0.00 3.01
1315 4567 1.891150 GGGACAGACCAGTACGAAGAA 59.109 52.381 0.00 0.00 41.20 2.52
1321 4573 2.745515 GTCAAGGGACAGACCAGTAC 57.254 55.000 0.00 0.00 43.73 2.73
1378 4649 1.276145 GACCGTGTGACGAGAGCAAC 61.276 60.000 0.00 0.00 46.05 4.17
1382 4653 1.154450 GACGACCGTGTGACGAGAG 60.154 63.158 0.00 0.00 46.05 3.20
1658 5204 7.283127 GCATGGGATTTTCTTGTTGATACTCTA 59.717 37.037 0.00 0.00 0.00 2.43
1715 5320 2.096811 GTCTACTAGCTAGCGTACGCAG 60.097 54.545 38.58 31.07 44.88 5.18
1805 5417 4.764823 GGTGGGATCTAGAGTCTAGTCATG 59.235 50.000 23.51 2.40 0.00 3.07
2265 8278 0.737219 GCCAGTCTGCCATGTCAATC 59.263 55.000 0.00 0.00 0.00 2.67
2292 8308 1.059584 TTTGTCACTCCCTGGAGCCA 61.060 55.000 13.15 5.08 45.54 4.75
2423 8463 2.359850 TTCTGCATGTCGGGCCAC 60.360 61.111 4.39 1.32 0.00 5.01
2504 8544 2.078452 CTCCCCCTGAAGCTGGAAA 58.922 57.895 0.00 0.00 0.00 3.13
2608 8648 3.797039 CACCATTGATCGATGTAGGTGT 58.203 45.455 19.55 8.64 40.00 4.16
2683 8751 2.355818 GGGAAGAACCTGGACATACACC 60.356 54.545 0.00 0.00 38.98 4.16
2903 8988 3.133721 AGAATAGCTTGCACTCTCCGATT 59.866 43.478 0.00 0.00 0.00 3.34
3022 9107 3.197790 CGCCGAAGACATGCAGGG 61.198 66.667 2.31 0.00 0.00 4.45
3072 9160 2.756760 GCACCATGGTCACAATTCTCAT 59.243 45.455 16.53 0.00 0.00 2.90
3095 9260 2.076622 ATAGCCGCAGCACCTCGTAG 62.077 60.000 0.00 0.00 43.56 3.51
3142 9307 0.527817 CTCCGTCGGCTTGTATGTCC 60.528 60.000 6.34 0.00 0.00 4.02
3461 9635 4.383861 CCGTGCTCAGGCTGCAGA 62.384 66.667 20.43 0.00 41.41 4.26
3670 9844 5.433855 CAAATGAAAATTTGACCGTTGCTG 58.566 37.500 5.44 0.00 42.47 4.41
3672 9846 4.509600 TCCAAATGAAAATTTGACCGTTGC 59.490 37.500 11.73 0.00 42.47 4.17
3742 9917 6.106003 AGAGTTGACCTTTTTCGCAATTTTT 58.894 32.000 0.00 0.00 0.00 1.94
3743 9918 5.660460 AGAGTTGACCTTTTTCGCAATTTT 58.340 33.333 0.00 0.00 0.00 1.82
3744 9919 5.262588 AGAGTTGACCTTTTTCGCAATTT 57.737 34.783 0.00 0.00 0.00 1.82
3745 9920 4.918810 AGAGTTGACCTTTTTCGCAATT 57.081 36.364 0.00 0.00 0.00 2.32
3746 9921 6.575162 AATAGAGTTGACCTTTTTCGCAAT 57.425 33.333 0.00 0.00 0.00 3.56
3783 9958 5.751243 TGTTTGAGGTGCTTTCTACTTTC 57.249 39.130 0.00 0.00 0.00 2.62
3832 11497 0.951558 GCAATGGTCGTTCAGTGGTT 59.048 50.000 9.33 0.00 33.85 3.67
3838 11503 3.053291 GGCGGCAATGGTCGTTCA 61.053 61.111 3.07 0.00 45.79 3.18
3858 11523 0.315568 AGGTCACACTGCTCGTTCTC 59.684 55.000 0.00 0.00 0.00 2.87
3868 11533 5.046950 GGTCATTTTCTCTCTAGGTCACACT 60.047 44.000 0.00 0.00 0.00 3.55
3870 11535 4.838423 TGGTCATTTTCTCTCTAGGTCACA 59.162 41.667 0.00 0.00 0.00 3.58
3871 11536 5.407407 TGGTCATTTTCTCTCTAGGTCAC 57.593 43.478 0.00 0.00 0.00 3.67
3872 11537 4.467795 CCTGGTCATTTTCTCTCTAGGTCA 59.532 45.833 0.00 0.00 0.00 4.02
3873 11538 4.468153 ACCTGGTCATTTTCTCTCTAGGTC 59.532 45.833 0.00 0.00 30.66 3.85
3874 11539 4.223923 CACCTGGTCATTTTCTCTCTAGGT 59.776 45.833 0.00 0.00 36.51 3.08
3875 11540 4.223923 ACACCTGGTCATTTTCTCTCTAGG 59.776 45.833 0.00 0.00 0.00 3.02
3876 11541 5.413309 ACACCTGGTCATTTTCTCTCTAG 57.587 43.478 0.00 0.00 0.00 2.43
3877 11542 5.407407 GACACCTGGTCATTTTCTCTCTA 57.593 43.478 0.00 0.00 46.19 2.43
3878 11543 4.278975 GACACCTGGTCATTTTCTCTCT 57.721 45.455 0.00 0.00 46.19 3.10
3889 11554 2.965831 TCATATGCTAGGACACCTGGTC 59.034 50.000 0.00 0.00 46.20 4.02
3890 11555 3.046283 TCATATGCTAGGACACCTGGT 57.954 47.619 0.00 0.00 34.44 4.00
3891 11556 3.580022 TGATCATATGCTAGGACACCTGG 59.420 47.826 0.00 0.00 34.61 4.45
3892 11557 4.282957 AGTGATCATATGCTAGGACACCTG 59.717 45.833 0.00 0.00 34.61 4.00
3893 11558 4.487804 AGTGATCATATGCTAGGACACCT 58.512 43.478 0.00 0.00 37.71 4.00
3894 11559 4.281941 TGAGTGATCATATGCTAGGACACC 59.718 45.833 0.00 0.00 0.00 4.16
3895 11560 5.459536 TGAGTGATCATATGCTAGGACAC 57.540 43.478 0.00 0.00 0.00 3.67
3896 11561 7.968014 ATATGAGTGATCATATGCTAGGACA 57.032 36.000 9.39 0.00 40.59 4.02
3897 11562 9.664332 AAAATATGAGTGATCATATGCTAGGAC 57.336 33.333 10.63 0.00 41.06 3.85
3898 11563 9.881649 GAAAATATGAGTGATCATATGCTAGGA 57.118 33.333 10.63 0.00 41.06 2.94
3899 11564 9.107177 GGAAAATATGAGTGATCATATGCTAGG 57.893 37.037 10.63 0.00 41.06 3.02
3900 11565 9.662947 TGGAAAATATGAGTGATCATATGCTAG 57.337 33.333 10.63 0.00 41.06 3.42
3902 11567 9.529823 AATGGAAAATATGAGTGATCATATGCT 57.470 29.630 10.63 0.00 41.06 3.79
3924 11589 7.505585 AGTGTGTGATACCCCATATTTAAATGG 59.494 37.037 11.05 5.94 45.20 3.16
3925 11590 8.463930 AGTGTGTGATACCCCATATTTAAATG 57.536 34.615 11.05 0.00 0.00 2.32
3960 11625 9.034544 GCAAGATGTTTTCTTTGTAAGTTTCAT 57.965 29.630 0.00 0.00 42.15 2.57
3961 11626 8.031864 TGCAAGATGTTTTCTTTGTAAGTTTCA 58.968 29.630 0.00 0.00 42.15 2.69
3962 11627 8.321005 GTGCAAGATGTTTTCTTTGTAAGTTTC 58.679 33.333 0.00 0.00 42.15 2.78
3963 11628 8.034804 AGTGCAAGATGTTTTCTTTGTAAGTTT 58.965 29.630 0.00 0.00 42.15 2.66
3964 11629 7.547227 AGTGCAAGATGTTTTCTTTGTAAGTT 58.453 30.769 0.00 0.00 42.15 2.66
3965 11630 7.100458 AGTGCAAGATGTTTTCTTTGTAAGT 57.900 32.000 0.00 0.00 42.15 2.24
3966 11631 6.358030 CGAGTGCAAGATGTTTTCTTTGTAAG 59.642 38.462 0.00 0.00 42.15 2.34
3967 11632 6.198687 CGAGTGCAAGATGTTTTCTTTGTAA 58.801 36.000 0.00 0.00 42.15 2.41
3968 11633 5.277779 CCGAGTGCAAGATGTTTTCTTTGTA 60.278 40.000 0.00 0.00 42.15 2.41
3969 11634 4.498009 CCGAGTGCAAGATGTTTTCTTTGT 60.498 41.667 0.00 0.00 42.15 2.83
3970 11635 3.976942 CCGAGTGCAAGATGTTTTCTTTG 59.023 43.478 0.00 0.00 42.15 2.77
3971 11636 3.632145 ACCGAGTGCAAGATGTTTTCTTT 59.368 39.130 0.00 0.00 42.15 2.52
3972 11637 3.003689 CACCGAGTGCAAGATGTTTTCTT 59.996 43.478 0.00 0.00 45.83 2.52
3973 11638 2.549754 CACCGAGTGCAAGATGTTTTCT 59.450 45.455 0.00 0.00 35.70 2.52
3974 11639 2.290641 ACACCGAGTGCAAGATGTTTTC 59.709 45.455 0.00 0.00 36.98 2.29
3975 11640 2.290641 GACACCGAGTGCAAGATGTTTT 59.709 45.455 0.00 0.00 36.98 2.43
3976 11641 1.873591 GACACCGAGTGCAAGATGTTT 59.126 47.619 0.00 0.00 36.98 2.83
3977 11642 1.202639 TGACACCGAGTGCAAGATGTT 60.203 47.619 0.00 0.00 36.98 2.71
3978 11643 0.392706 TGACACCGAGTGCAAGATGT 59.607 50.000 0.00 0.00 36.98 3.06
3979 11644 1.395954 CATGACACCGAGTGCAAGATG 59.604 52.381 0.00 0.00 36.98 2.90
3980 11645 1.002430 ACATGACACCGAGTGCAAGAT 59.998 47.619 0.00 0.00 36.98 2.40
3981 11646 0.392706 ACATGACACCGAGTGCAAGA 59.607 50.000 0.00 0.00 36.98 3.02
3982 11647 0.514255 CACATGACACCGAGTGCAAG 59.486 55.000 0.00 4.05 36.98 4.01
3983 11648 2.615774 CACATGACACCGAGTGCAA 58.384 52.632 0.00 0.00 36.98 4.08
3984 11649 4.359475 CACATGACACCGAGTGCA 57.641 55.556 0.00 0.00 36.98 4.57
3986 11651 1.862123 GTGCACATGACACCGAGTG 59.138 57.895 13.17 2.92 39.75 3.51
3987 11652 4.361253 GTGCACATGACACCGAGT 57.639 55.556 13.17 0.00 31.67 4.18
3992 11657 1.973281 CCCTGGGTGCACATGACAC 60.973 63.158 20.43 13.11 37.31 3.67
3993 11658 2.128290 CTCCCTGGGTGCACATGACA 62.128 60.000 20.43 10.58 0.00 3.58
3994 11659 1.377725 CTCCCTGGGTGCACATGAC 60.378 63.158 20.43 6.16 0.00 3.06
3995 11660 3.080641 CTCCCTGGGTGCACATGA 58.919 61.111 20.43 6.04 0.00 3.07
3996 11661 2.753043 GCTCCCTGGGTGCACATG 60.753 66.667 29.70 7.57 41.27 3.21
3997 11662 2.937689 AGCTCCCTGGGTGCACAT 60.938 61.111 34.04 16.54 43.69 3.21
3998 11663 3.640407 GAGCTCCCTGGGTGCACA 61.640 66.667 34.04 6.72 43.69 4.57
3999 11664 3.196207 TTGAGCTCCCTGGGTGCAC 62.196 63.158 34.04 29.21 43.69 4.57
4000 11665 2.853542 TTGAGCTCCCTGGGTGCA 60.854 61.111 34.04 17.21 43.69 4.57
4001 11666 2.360475 GTTGAGCTCCCTGGGTGC 60.360 66.667 28.02 28.02 41.85 5.01
4002 11667 0.607489 CAAGTTGAGCTCCCTGGGTG 60.607 60.000 13.56 11.90 0.00 4.61
4003 11668 0.768221 TCAAGTTGAGCTCCCTGGGT 60.768 55.000 13.56 0.00 0.00 4.51
4004 11669 0.035630 CTCAAGTTGAGCTCCCTGGG 60.036 60.000 19.55 6.33 37.72 4.45
4005 11670 3.547567 CTCAAGTTGAGCTCCCTGG 57.452 57.895 19.55 4.88 37.72 4.45
4014 11679 2.632996 CTCAGGGGTGTACTCAAGTTGA 59.367 50.000 5.25 5.25 0.00 3.18
4015 11680 2.632996 TCTCAGGGGTGTACTCAAGTTG 59.367 50.000 0.00 0.00 0.00 3.16
4016 11681 2.633481 GTCTCAGGGGTGTACTCAAGTT 59.367 50.000 0.00 0.00 0.00 2.66
4017 11682 2.249139 GTCTCAGGGGTGTACTCAAGT 58.751 52.381 0.00 0.00 0.00 3.16
4018 11683 1.202582 CGTCTCAGGGGTGTACTCAAG 59.797 57.143 0.00 0.00 0.00 3.02
4019 11684 1.202964 TCGTCTCAGGGGTGTACTCAA 60.203 52.381 0.00 0.00 0.00 3.02
4020 11685 0.402887 TCGTCTCAGGGGTGTACTCA 59.597 55.000 0.00 0.00 0.00 3.41
4021 11686 1.096416 CTCGTCTCAGGGGTGTACTC 58.904 60.000 0.00 0.00 0.00 2.59
4022 11687 0.966370 GCTCGTCTCAGGGGTGTACT 60.966 60.000 0.00 0.00 0.00 2.73
4023 11688 1.511768 GCTCGTCTCAGGGGTGTAC 59.488 63.158 0.00 0.00 0.00 2.90
4024 11689 1.681327 GGCTCGTCTCAGGGGTGTA 60.681 63.158 0.00 0.00 0.00 2.90
4025 11690 2.997897 GGCTCGTCTCAGGGGTGT 60.998 66.667 0.00 0.00 0.00 4.16
4026 11691 4.135153 CGGCTCGTCTCAGGGGTG 62.135 72.222 0.00 0.00 0.00 4.61
4027 11692 4.680537 ACGGCTCGTCTCAGGGGT 62.681 66.667 0.00 0.00 33.69 4.95
4083 11748 1.608025 GCCTGTCATCGACAAGGTCAA 60.608 52.381 11.61 0.00 42.26 3.18
4124 11789 4.441792 GTGGAGTGTATGTGTATGCATCA 58.558 43.478 0.19 0.00 31.49 3.07
4137 11802 1.031235 TCGTTTCGTGGTGGAGTGTA 58.969 50.000 0.00 0.00 0.00 2.90
4140 11805 0.391597 ATGTCGTTTCGTGGTGGAGT 59.608 50.000 0.00 0.00 0.00 3.85
4187 11852 3.417101 ACATTAATTCCCGTCAACAGCA 58.583 40.909 0.00 0.00 0.00 4.41
4191 11856 4.007659 AGGTGACATTAATTCCCGTCAAC 58.992 43.478 11.79 11.79 44.62 3.18
4193 11858 3.992943 AGGTGACATTAATTCCCGTCA 57.007 42.857 2.99 2.99 36.09 4.35
4228 11893 3.120923 CGTTTTAGCGGACTTTTAAGCGA 60.121 43.478 0.00 0.00 34.34 4.93
4238 11903 2.540931 TGTTTGTCTCGTTTTAGCGGAC 59.459 45.455 0.00 0.00 34.80 4.79
4239 11904 2.798283 CTGTTTGTCTCGTTTTAGCGGA 59.202 45.455 0.00 0.00 0.00 5.54
4240 11905 2.798283 TCTGTTTGTCTCGTTTTAGCGG 59.202 45.455 0.00 0.00 0.00 5.52
4241 11906 4.446857 TTCTGTTTGTCTCGTTTTAGCG 57.553 40.909 0.00 0.00 0.00 4.26
4271 11939 3.003480 CCAACGAGAGATCAAACCCTTC 58.997 50.000 0.00 0.00 0.00 3.46
4294 11965 3.992260 AGCTAAGATGCGTCGTTCTAT 57.008 42.857 0.00 0.00 38.13 1.98
4297 11968 2.117910 GGTAGCTAAGATGCGTCGTTC 58.882 52.381 0.00 0.00 38.13 3.95
4301 11972 2.202566 GGTTGGTAGCTAAGATGCGTC 58.797 52.381 0.00 0.00 38.13 5.19
4304 11975 2.880890 CCATGGTTGGTAGCTAAGATGC 59.119 50.000 2.57 0.00 38.30 3.91
4321 11992 3.627123 TGATCATTACGAACCAAGCCATG 59.373 43.478 0.00 0.00 0.00 3.66
4322 11993 3.879295 CTGATCATTACGAACCAAGCCAT 59.121 43.478 0.00 0.00 0.00 4.40
4323 11994 3.055458 TCTGATCATTACGAACCAAGCCA 60.055 43.478 0.00 0.00 0.00 4.75
4324 11995 3.531538 TCTGATCATTACGAACCAAGCC 58.468 45.455 0.00 0.00 0.00 4.35
4325 11996 4.631813 AGTTCTGATCATTACGAACCAAGC 59.368 41.667 17.38 0.00 37.15 4.01
4326 11997 5.639506 ACAGTTCTGATCATTACGAACCAAG 59.360 40.000 17.38 12.22 37.15 3.61
4327 11998 5.547465 ACAGTTCTGATCATTACGAACCAA 58.453 37.500 17.38 0.00 37.15 3.67
4328 11999 5.147330 ACAGTTCTGATCATTACGAACCA 57.853 39.130 17.38 0.00 37.15 3.67
4329 12000 7.772332 ATAACAGTTCTGATCATTACGAACC 57.228 36.000 17.38 5.10 37.15 3.62
4330 12001 7.636359 GCAATAACAGTTCTGATCATTACGAAC 59.364 37.037 14.58 14.58 36.81 3.95
4331 12002 7.201609 GGCAATAACAGTTCTGATCATTACGAA 60.202 37.037 6.83 0.00 0.00 3.85
4332 12003 6.257849 GGCAATAACAGTTCTGATCATTACGA 59.742 38.462 6.83 0.00 0.00 3.43
4333 12004 6.422223 GGCAATAACAGTTCTGATCATTACG 58.578 40.000 6.83 0.00 0.00 3.18
4334 12005 6.037172 ACGGCAATAACAGTTCTGATCATTAC 59.963 38.462 6.83 0.00 0.00 1.89
4335 12006 6.037062 CACGGCAATAACAGTTCTGATCATTA 59.963 38.462 6.83 0.00 0.00 1.90
4336 12007 4.943705 ACGGCAATAACAGTTCTGATCATT 59.056 37.500 6.83 0.00 0.00 2.57
4337 12008 4.333649 CACGGCAATAACAGTTCTGATCAT 59.666 41.667 6.83 0.00 0.00 2.45
4338 12009 3.684305 CACGGCAATAACAGTTCTGATCA 59.316 43.478 6.83 0.00 0.00 2.92
4339 12010 3.063997 CCACGGCAATAACAGTTCTGATC 59.936 47.826 6.83 0.00 0.00 2.92
4340 12011 3.009723 CCACGGCAATAACAGTTCTGAT 58.990 45.455 6.83 0.00 0.00 2.90
4341 12012 2.037902 TCCACGGCAATAACAGTTCTGA 59.962 45.455 6.83 0.00 0.00 3.27
4342 12013 2.422597 TCCACGGCAATAACAGTTCTG 58.577 47.619 0.00 0.00 0.00 3.02
4343 12014 2.851263 TCCACGGCAATAACAGTTCT 57.149 45.000 0.00 0.00 0.00 3.01
4344 12015 3.003897 TGTTTCCACGGCAATAACAGTTC 59.996 43.478 0.00 0.00 0.00 3.01
4345 12016 2.952978 TGTTTCCACGGCAATAACAGTT 59.047 40.909 0.00 0.00 0.00 3.16
4346 12017 2.577700 TGTTTCCACGGCAATAACAGT 58.422 42.857 0.00 0.00 0.00 3.55
4347 12018 3.243234 TGTTGTTTCCACGGCAATAACAG 60.243 43.478 6.67 0.00 31.39 3.16
4348 12019 2.688446 TGTTGTTTCCACGGCAATAACA 59.312 40.909 6.67 6.67 33.22 2.41
4349 12020 3.357166 TGTTGTTTCCACGGCAATAAC 57.643 42.857 2.04 2.04 0.00 1.89
4350 12021 4.386867 TTTGTTGTTTCCACGGCAATAA 57.613 36.364 0.00 0.00 0.00 1.40
4351 12022 4.098044 TCTTTTGTTGTTTCCACGGCAATA 59.902 37.500 0.00 0.00 0.00 1.90
4352 12023 2.969628 TTTGTTGTTTCCACGGCAAT 57.030 40.000 0.00 0.00 0.00 3.56
4353 12024 2.231478 TCTTTTGTTGTTTCCACGGCAA 59.769 40.909 0.00 0.00 0.00 4.52
4354 12025 1.819288 TCTTTTGTTGTTTCCACGGCA 59.181 42.857 0.00 0.00 0.00 5.69
4355 12026 2.159296 ACTCTTTTGTTGTTTCCACGGC 60.159 45.455 0.00 0.00 0.00 5.68
4356 12027 3.775661 ACTCTTTTGTTGTTTCCACGG 57.224 42.857 0.00 0.00 0.00 4.94
4357 12028 5.277345 CCTCTACTCTTTTGTTGTTTCCACG 60.277 44.000 0.00 0.00 0.00 4.94
4358 12029 5.008712 CCCTCTACTCTTTTGTTGTTTCCAC 59.991 44.000 0.00 0.00 0.00 4.02
4359 12030 5.130350 CCCTCTACTCTTTTGTTGTTTCCA 58.870 41.667 0.00 0.00 0.00 3.53
4360 12031 5.131067 ACCCTCTACTCTTTTGTTGTTTCC 58.869 41.667 0.00 0.00 0.00 3.13
4361 12032 7.444487 ACATACCCTCTACTCTTTTGTTGTTTC 59.556 37.037 0.00 0.00 0.00 2.78
4362 12033 7.287810 ACATACCCTCTACTCTTTTGTTGTTT 58.712 34.615 0.00 0.00 0.00 2.83
4363 12034 6.838382 ACATACCCTCTACTCTTTTGTTGTT 58.162 36.000 0.00 0.00 0.00 2.83
4364 12035 6.435292 ACATACCCTCTACTCTTTTGTTGT 57.565 37.500 0.00 0.00 0.00 3.32
4365 12036 5.577164 CGACATACCCTCTACTCTTTTGTTG 59.423 44.000 0.00 0.00 0.00 3.33
4366 12037 5.245526 ACGACATACCCTCTACTCTTTTGTT 59.754 40.000 0.00 0.00 0.00 2.83
4367 12038 4.771054 ACGACATACCCTCTACTCTTTTGT 59.229 41.667 0.00 0.00 0.00 2.83
4368 12039 5.326200 ACGACATACCCTCTACTCTTTTG 57.674 43.478 0.00 0.00 0.00 2.44
4369 12040 5.245526 ACAACGACATACCCTCTACTCTTTT 59.754 40.000 0.00 0.00 0.00 2.27
4370 12041 4.771054 ACAACGACATACCCTCTACTCTTT 59.229 41.667 0.00 0.00 0.00 2.52
4371 12042 4.342359 ACAACGACATACCCTCTACTCTT 58.658 43.478 0.00 0.00 0.00 2.85
4372 12043 3.965694 ACAACGACATACCCTCTACTCT 58.034 45.455 0.00 0.00 0.00 3.24
4373 12044 4.715527 AACAACGACATACCCTCTACTC 57.284 45.455 0.00 0.00 0.00 2.59
4374 12045 5.259632 ACTAACAACGACATACCCTCTACT 58.740 41.667 0.00 0.00 0.00 2.57
4375 12046 5.573337 ACTAACAACGACATACCCTCTAC 57.427 43.478 0.00 0.00 0.00 2.59
4376 12047 6.418101 AGTACTAACAACGACATACCCTCTA 58.582 40.000 0.00 0.00 0.00 2.43
4377 12048 5.259632 AGTACTAACAACGACATACCCTCT 58.740 41.667 0.00 0.00 0.00 3.69
4378 12049 5.124457 TGAGTACTAACAACGACATACCCTC 59.876 44.000 0.00 0.00 0.00 4.30
4379 12050 5.012239 TGAGTACTAACAACGACATACCCT 58.988 41.667 0.00 0.00 0.00 4.34
4380 12051 5.314923 TGAGTACTAACAACGACATACCC 57.685 43.478 0.00 0.00 0.00 3.69
4381 12052 6.615088 TCTTGAGTACTAACAACGACATACC 58.385 40.000 0.00 0.00 0.00 2.73
4382 12053 7.966753 TCATCTTGAGTACTAACAACGACATAC 59.033 37.037 0.00 0.00 0.00 2.39
4383 12054 8.047413 TCATCTTGAGTACTAACAACGACATA 57.953 34.615 0.00 0.00 0.00 2.29
4384 12055 6.920817 TCATCTTGAGTACTAACAACGACAT 58.079 36.000 0.00 0.00 0.00 3.06
4385 12056 6.321848 TCATCTTGAGTACTAACAACGACA 57.678 37.500 0.00 0.00 0.00 4.35
4386 12057 7.633361 TTTCATCTTGAGTACTAACAACGAC 57.367 36.000 0.00 0.00 0.00 4.34
4387 12058 8.827177 ATTTTCATCTTGAGTACTAACAACGA 57.173 30.769 0.00 0.00 0.00 3.85
4391 12062 9.719355 TGCTAATTTTCATCTTGAGTACTAACA 57.281 29.630 0.00 0.00 0.00 2.41
4393 12064 9.383519 CCTGCTAATTTTCATCTTGAGTACTAA 57.616 33.333 0.00 0.00 0.00 2.24
4394 12065 7.987458 CCCTGCTAATTTTCATCTTGAGTACTA 59.013 37.037 0.00 0.00 0.00 1.82
4395 12066 6.825721 CCCTGCTAATTTTCATCTTGAGTACT 59.174 38.462 0.00 0.00 0.00 2.73
4396 12067 6.458888 GCCCTGCTAATTTTCATCTTGAGTAC 60.459 42.308 0.00 0.00 0.00 2.73
4397 12068 5.590259 GCCCTGCTAATTTTCATCTTGAGTA 59.410 40.000 0.00 0.00 0.00 2.59
4398 12069 4.400567 GCCCTGCTAATTTTCATCTTGAGT 59.599 41.667 0.00 0.00 0.00 3.41
4399 12070 4.202090 GGCCCTGCTAATTTTCATCTTGAG 60.202 45.833 0.00 0.00 0.00 3.02
4400 12071 3.701040 GGCCCTGCTAATTTTCATCTTGA 59.299 43.478 0.00 0.00 0.00 3.02
4401 12072 3.181472 GGGCCCTGCTAATTTTCATCTTG 60.181 47.826 17.04 0.00 0.00 3.02
4402 12073 3.033909 GGGCCCTGCTAATTTTCATCTT 58.966 45.455 17.04 0.00 0.00 2.40
4403 12074 2.670939 GGGCCCTGCTAATTTTCATCT 58.329 47.619 17.04 0.00 0.00 2.90
4404 12075 1.338020 CGGGCCCTGCTAATTTTCATC 59.662 52.381 22.43 0.00 0.00 2.92
4405 12076 1.341976 ACGGGCCCTGCTAATTTTCAT 60.342 47.619 22.43 0.00 0.00 2.57
4406 12077 0.039035 ACGGGCCCTGCTAATTTTCA 59.961 50.000 22.43 0.00 0.00 2.69
4407 12078 1.674441 GTACGGGCCCTGCTAATTTTC 59.326 52.381 22.43 0.00 0.00 2.29
4408 12079 1.758936 GTACGGGCCCTGCTAATTTT 58.241 50.000 22.43 0.00 0.00 1.82
4409 12080 0.463116 CGTACGGGCCCTGCTAATTT 60.463 55.000 22.43 0.00 0.00 1.82
4410 12081 1.145377 CGTACGGGCCCTGCTAATT 59.855 57.895 22.43 0.00 0.00 1.40
4411 12082 1.332144 TTCGTACGGGCCCTGCTAAT 61.332 55.000 22.43 0.16 0.00 1.73
4412 12083 1.543065 TTTCGTACGGGCCCTGCTAA 61.543 55.000 22.43 6.22 0.00 3.09
4413 12084 1.952102 CTTTCGTACGGGCCCTGCTA 61.952 60.000 22.43 3.12 0.00 3.49
4414 12085 3.310860 CTTTCGTACGGGCCCTGCT 62.311 63.158 22.43 4.25 0.00 4.24
4415 12086 2.818274 CTTTCGTACGGGCCCTGC 60.818 66.667 22.43 9.72 0.00 4.85
4416 12087 1.447314 GTCTTTCGTACGGGCCCTG 60.447 63.158 22.43 16.23 0.00 4.45
4417 12088 2.653087 GGTCTTTCGTACGGGCCCT 61.653 63.158 22.43 9.76 0.00 5.19
4418 12089 2.125391 GGTCTTTCGTACGGGCCC 60.125 66.667 13.57 13.57 0.00 5.80
4419 12090 0.532115 TAAGGTCTTTCGTACGGGCC 59.468 55.000 16.52 10.56 0.00 5.80
4420 12091 2.591571 ATAAGGTCTTTCGTACGGGC 57.408 50.000 16.52 0.08 0.00 6.13
4421 12092 3.636381 GCTATAAGGTCTTTCGTACGGG 58.364 50.000 16.52 6.46 0.00 5.28
4422 12093 3.002656 TCGCTATAAGGTCTTTCGTACGG 59.997 47.826 16.52 0.00 0.00 4.02
4423 12094 4.201208 TCGCTATAAGGTCTTTCGTACG 57.799 45.455 9.53 9.53 0.00 3.67
4424 12095 6.032717 ACTTTCGCTATAAGGTCTTTCGTAC 58.967 40.000 0.00 0.00 0.00 3.67
4425 12096 6.127925 TGACTTTCGCTATAAGGTCTTTCGTA 60.128 38.462 0.00 0.00 36.65 3.43
4426 12097 5.069501 ACTTTCGCTATAAGGTCTTTCGT 57.930 39.130 0.00 0.00 0.00 3.85
4427 12098 5.004535 GTGACTTTCGCTATAAGGTCTTTCG 59.995 44.000 0.00 0.00 36.65 3.46
4428 12099 5.291371 GGTGACTTTCGCTATAAGGTCTTTC 59.709 44.000 0.00 0.00 36.65 2.62
4429 12100 5.176592 GGTGACTTTCGCTATAAGGTCTTT 58.823 41.667 0.00 0.00 36.65 2.52
4430 12101 4.222145 TGGTGACTTTCGCTATAAGGTCTT 59.778 41.667 0.00 0.00 36.65 3.01
4431 12102 3.767673 TGGTGACTTTCGCTATAAGGTCT 59.232 43.478 0.00 0.00 36.65 3.85
4432 12103 4.119442 TGGTGACTTTCGCTATAAGGTC 57.881 45.455 0.00 0.00 36.35 3.85
4433 12104 4.755266 ATGGTGACTTTCGCTATAAGGT 57.245 40.909 0.00 0.00 0.00 3.50
4434 12105 5.120830 GCATATGGTGACTTTCGCTATAAGG 59.879 44.000 4.56 0.00 34.74 2.69
4435 12106 5.928839 AGCATATGGTGACTTTCGCTATAAG 59.071 40.000 6.62 0.00 34.74 1.73
4436 12107 5.696270 CAGCATATGGTGACTTTCGCTATAA 59.304 40.000 27.06 0.00 45.66 0.98
4437 12108 5.010617 TCAGCATATGGTGACTTTCGCTATA 59.989 40.000 29.02 6.92 46.24 1.31
4438 12109 4.060900 CAGCATATGGTGACTTTCGCTAT 58.939 43.478 27.06 0.00 45.66 2.97
4439 12110 3.132111 TCAGCATATGGTGACTTTCGCTA 59.868 43.478 29.02 8.08 46.24 4.26
4440 12111 2.093500 TCAGCATATGGTGACTTTCGCT 60.093 45.455 29.02 2.38 46.24 4.93
4441 12112 2.279741 TCAGCATATGGTGACTTTCGC 58.720 47.619 29.02 0.00 46.24 4.70
4449 12120 3.470709 CCTACCTTGTCAGCATATGGTG 58.529 50.000 25.58 25.58 44.29 4.17
4450 12121 2.158755 GCCTACCTTGTCAGCATATGGT 60.159 50.000 0.40 0.40 0.00 3.55
4451 12122 2.158769 TGCCTACCTTGTCAGCATATGG 60.159 50.000 4.56 0.00 0.00 2.74
4452 12123 2.874701 GTGCCTACCTTGTCAGCATATG 59.125 50.000 0.00 0.00 35.62 1.78
4453 12124 2.505407 TGTGCCTACCTTGTCAGCATAT 59.495 45.455 0.00 0.00 35.62 1.78
4454 12125 1.905894 TGTGCCTACCTTGTCAGCATA 59.094 47.619 0.00 0.00 35.62 3.14
4455 12126 0.692476 TGTGCCTACCTTGTCAGCAT 59.308 50.000 0.00 0.00 35.62 3.79
4456 12127 0.692476 ATGTGCCTACCTTGTCAGCA 59.308 50.000 0.00 0.00 0.00 4.41
4457 12128 1.373570 GATGTGCCTACCTTGTCAGC 58.626 55.000 0.00 0.00 0.00 4.26
4458 12129 1.204704 TCGATGTGCCTACCTTGTCAG 59.795 52.381 0.00 0.00 0.00 3.51
4459 12130 1.067142 GTCGATGTGCCTACCTTGTCA 60.067 52.381 0.00 0.00 0.00 3.58
4460 12131 1.067142 TGTCGATGTGCCTACCTTGTC 60.067 52.381 0.00 0.00 0.00 3.18
4461 12132 0.973632 TGTCGATGTGCCTACCTTGT 59.026 50.000 0.00 0.00 0.00 3.16
4462 12133 2.315925 ATGTCGATGTGCCTACCTTG 57.684 50.000 0.00 0.00 0.00 3.61
4463 12134 3.350219 AAATGTCGATGTGCCTACCTT 57.650 42.857 0.00 0.00 0.00 3.50
4464 12135 3.270877 GAAAATGTCGATGTGCCTACCT 58.729 45.455 0.00 0.00 0.00 3.08
4465 12136 2.354821 GGAAAATGTCGATGTGCCTACC 59.645 50.000 0.00 0.00 0.00 3.18
4466 12137 3.270877 AGGAAAATGTCGATGTGCCTAC 58.729 45.455 0.00 0.00 0.00 3.18
4467 12138 3.627395 AGGAAAATGTCGATGTGCCTA 57.373 42.857 0.00 0.00 0.00 3.93
4468 12139 2.496899 AGGAAAATGTCGATGTGCCT 57.503 45.000 0.00 0.00 0.00 4.75
4469 12140 3.575965 AAAGGAAAATGTCGATGTGCC 57.424 42.857 0.00 0.00 0.00 5.01
4470 12141 5.095490 CCTAAAAGGAAAATGTCGATGTGC 58.905 41.667 0.00 0.00 37.67 4.57
4471 12142 5.414454 TCCCTAAAAGGAAAATGTCGATGTG 59.586 40.000 0.00 0.00 37.67 3.21
4472 12143 5.566469 TCCCTAAAAGGAAAATGTCGATGT 58.434 37.500 0.00 0.00 37.67 3.06
4473 12144 6.509418 TTCCCTAAAAGGAAAATGTCGATG 57.491 37.500 0.00 0.00 43.02 3.84
4483 12154 8.458951 AAGTCCTACTATTTCCCTAAAAGGAA 57.541 34.615 0.00 0.00 44.30 3.36
4484 12155 8.458951 AAAGTCCTACTATTTCCCTAAAAGGA 57.541 34.615 0.00 0.00 37.67 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.