Multiple sequence alignment - TraesCS3B01G256400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G256400 chr3B 100.000 3919 0 0 1 3919 413968552 413972470 0.000000e+00 7238.0
1 TraesCS3B01G256400 chr3B 73.622 762 179 19 1035 1780 413865977 413865222 1.390000e-69 274.0
2 TraesCS3B01G256400 chr3D 95.933 1426 50 6 1560 2980 307795601 307794179 0.000000e+00 2305.0
3 TraesCS3B01G256400 chr3D 92.698 1260 64 10 290 1533 307796926 307795679 0.000000e+00 1792.0
4 TraesCS3B01G256400 chr3D 92.042 289 21 1 1 289 307797243 307796957 4.720000e-109 405.0
5 TraesCS3B01G256400 chr3D 93.091 275 12 2 3094 3368 307793970 307793703 2.840000e-106 396.0
6 TraesCS3B01G256400 chr3D 75.149 503 117 7 1035 1533 307880032 307880530 3.050000e-56 230.0
7 TraesCS3B01G256400 chr3D 77.000 400 86 6 1976 2372 307881620 307882016 1.420000e-54 224.0
8 TraesCS3B01G256400 chr3D 95.082 122 6 0 2974 3095 307794156 307794035 4.000000e-45 193.0
9 TraesCS3B01G256400 chr3A 94.811 1426 64 7 1560 2980 427092174 427090754 0.000000e+00 2215.0
10 TraesCS3B01G256400 chr3A 94.852 1049 35 10 504 1536 427093360 427092315 0.000000e+00 1620.0
11 TraesCS3B01G256400 chr3A 86.282 277 29 5 12 288 427095552 427095285 3.830000e-75 292.0
12 TraesCS3B01G256400 chr3A 71.977 860 216 21 1035 1878 427191562 427192412 3.050000e-56 230.0
13 TraesCS3B01G256400 chr3A 94.262 122 7 0 2974 3095 427090731 427090610 1.860000e-43 187.0
14 TraesCS3B01G256400 chr3A 87.273 165 13 4 290 450 427095253 427095093 8.650000e-42 182.0
15 TraesCS3B01G256400 chr3A 82.031 128 16 7 3525 3648 531687269 531687393 6.930000e-18 102.0
16 TraesCS3B01G256400 chr6D 83.183 553 75 9 3131 3673 98765934 98766478 1.270000e-134 490.0
17 TraesCS3B01G256400 chr6D 79.277 415 86 0 1117 1531 453652376 453651962 1.380000e-74 291.0
18 TraesCS3B01G256400 chr6A 83.114 533 73 9 3154 3675 203589622 203589096 1.650000e-128 470.0
19 TraesCS3B01G256400 chr6A 78.270 474 99 4 1060 1531 599831994 599831523 6.360000e-78 302.0
20 TraesCS3B01G256400 chr6A 83.077 130 15 7 3524 3650 455465995 455466120 1.150000e-20 111.0
21 TraesCS3B01G256400 chr4B 80.662 393 76 0 1977 2369 432787726 432787334 4.920000e-79 305.0
22 TraesCS3B01G256400 chr4B 80.000 200 36 4 84 281 16872602 16872405 1.130000e-30 145.0
23 TraesCS3B01G256400 chr4A 80.662 393 76 0 1977 2369 115304081 115304473 4.920000e-79 305.0
24 TraesCS3B01G256400 chr4A 79.688 128 16 9 3524 3646 698290253 698290131 2.510000e-12 84.2
25 TraesCS3B01G256400 chr6B 77.615 478 97 9 1059 1531 688469601 688470073 8.290000e-72 281.0
26 TraesCS3B01G256400 chr1A 86.070 201 25 2 83 281 105308277 105308476 3.070000e-51 213.0
27 TraesCS3B01G256400 chr2D 85.354 198 29 0 84 281 601956364 601956561 5.130000e-49 206.0
28 TraesCS3B01G256400 chr2A 73.453 501 125 7 1035 1531 174039143 174039639 8.650000e-42 182.0
29 TraesCS3B01G256400 chr5D 78.281 221 38 6 70 281 52394166 52393947 2.460000e-27 134.0
30 TraesCS3B01G256400 chr5D 79.188 197 36 3 88 280 397023354 397023159 8.840000e-27 132.0
31 TraesCS3B01G256400 chr1B 80.110 181 27 6 104 281 551248262 551248436 4.110000e-25 126.0
32 TraesCS3B01G256400 chr1B 79.817 109 17 5 82 188 349637261 349637366 1.510000e-09 75.0
33 TraesCS3B01G256400 chr7D 79.130 115 24 0 167 281 422725835 422725721 3.250000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G256400 chr3B 413968552 413972470 3918 False 7238.0 7238 100.0000 1 3919 1 chr3B.!!$F1 3918
1 TraesCS3B01G256400 chr3B 413865222 413865977 755 True 274.0 274 73.6220 1035 1780 1 chr3B.!!$R1 745
2 TraesCS3B01G256400 chr3D 307793703 307797243 3540 True 1018.2 2305 93.7692 1 3368 5 chr3D.!!$R1 3367
3 TraesCS3B01G256400 chr3D 307880032 307882016 1984 False 227.0 230 76.0745 1035 2372 2 chr3D.!!$F1 1337
4 TraesCS3B01G256400 chr3A 427090610 427095552 4942 True 899.2 2215 91.4960 12 3095 5 chr3A.!!$R1 3083
5 TraesCS3B01G256400 chr3A 427191562 427192412 850 False 230.0 230 71.9770 1035 1878 1 chr3A.!!$F1 843
6 TraesCS3B01G256400 chr6D 98765934 98766478 544 False 490.0 490 83.1830 3131 3673 1 chr6D.!!$F1 542
7 TraesCS3B01G256400 chr6A 203589096 203589622 526 True 470.0 470 83.1140 3154 3675 1 chr6A.!!$R1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.038343 CTCATTGGGCGGTTTGGTTG 60.038 55.0 0.0 0.0 0.00 3.77 F
763 2498 0.174845 CGACCAAGCCGATTCCACTA 59.825 55.0 0.0 0.0 0.00 2.74 F
1545 3297 0.320771 AGGTACGCAGAGCACCTTTG 60.321 55.0 0.0 0.0 39.73 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 3273 0.038159 GTGCTCTGCGTACCTTGACT 60.038 55.0 0.00 0.00 0.00 3.41 R
1678 3553 0.106894 CCGTTGGAGCCTAGGGATTC 59.893 60.0 11.72 0.00 0.00 2.52 R
3418 6036 0.515127 TTTATCAAGCACGTGCACCG 59.485 50.0 39.21 26.59 45.16 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.744087 TGCTCTTTTAACACAGTACAATCAT 57.256 32.000 0.00 0.00 0.00 2.45
67 68 9.061435 CATAGATACACTCATCTCTACTGTTCA 57.939 37.037 0.00 0.00 36.63 3.18
82 83 4.608514 TCAAGCCCCCACCCCTCA 62.609 66.667 0.00 0.00 0.00 3.86
98 99 0.038343 CTCATTGGGCGGTTTGGTTG 60.038 55.000 0.00 0.00 0.00 3.77
136 137 3.290948 TGCTAGGTTTTGTGTGAGGTT 57.709 42.857 0.00 0.00 0.00 3.50
191 192 5.537300 TCATCAAGTTGATAGGAGTAGCC 57.463 43.478 17.86 0.00 34.28 3.93
202 203 7.353414 TGATAGGAGTAGCCATAGATATTGC 57.647 40.000 0.00 0.00 40.02 3.56
210 211 5.065613 AGCCATAGATATTGCCAGGAAAA 57.934 39.130 0.00 0.00 0.00 2.29
321 352 7.495055 TCATCTCTACGGACGCACTATATATA 58.505 38.462 0.00 0.00 0.00 0.86
351 382 4.619973 TGTTTGCTTTTTATGGTGCTCAG 58.380 39.130 0.00 0.00 0.00 3.35
450 485 6.429624 TGTTCAAATAATATAGCTTGCGCAG 58.570 36.000 11.31 6.32 39.10 5.18
496 531 3.188492 TCTTGCTTTAACAACGACGACA 58.812 40.909 0.00 0.00 0.00 4.35
498 533 4.271533 TCTTGCTTTAACAACGACGACAAT 59.728 37.500 0.00 0.00 0.00 2.71
500 535 3.223157 GCTTTAACAACGACGACAATGG 58.777 45.455 0.00 0.00 0.00 3.16
556 2288 2.336667 GATGCATTTTGGGGTGTTTCG 58.663 47.619 0.00 0.00 0.00 3.46
557 2289 1.115467 TGCATTTTGGGGTGTTTCGT 58.885 45.000 0.00 0.00 0.00 3.85
589 2321 6.768381 AGAAGGGCTAAGCTGAATATAAACAC 59.232 38.462 0.00 0.00 0.00 3.32
606 2338 3.581024 ACACGGCGTTGACTTTAGATA 57.419 42.857 11.19 0.00 0.00 1.98
630 2362 5.470368 TCGCTTCTCAGGTTATATATGCAC 58.530 41.667 0.00 0.00 0.00 4.57
681 2413 3.063180 CCGAGCAAATCTGAGTTGTGATC 59.937 47.826 17.77 12.59 0.00 2.92
761 2496 1.079405 TCGACCAAGCCGATTCCAC 60.079 57.895 0.00 0.00 0.00 4.02
763 2498 0.174845 CGACCAAGCCGATTCCACTA 59.825 55.000 0.00 0.00 0.00 2.74
767 2502 1.202580 CCAAGCCGATTCCACTAGGAG 60.203 57.143 0.00 0.00 46.74 3.69
791 2526 2.037251 TCTTCTCCACCAAGTTCCTTCG 59.963 50.000 0.00 0.00 0.00 3.79
871 2610 0.535335 GGCACGATCCAAGGACTACA 59.465 55.000 0.00 0.00 0.00 2.74
882 2621 2.345991 GACTACAGCAACCGGGCA 59.654 61.111 6.32 0.00 35.83 5.36
903 2642 5.071923 GGCAACACCTCCTCTATATAACCTT 59.928 44.000 0.00 0.00 34.51 3.50
990 2742 6.016443 CACTTTTCTCCTGAGAATGCTCTTTT 60.016 38.462 10.22 0.00 45.78 2.27
1210 2962 3.072468 TCAAGGAGTACGGCCGGG 61.072 66.667 31.76 2.28 0.00 5.73
1374 3126 4.011517 GACCCCGACCTCGCCAAA 62.012 66.667 0.00 0.00 38.18 3.28
1521 3273 1.733041 CGCGTTCCAGCTCGAGAAA 60.733 57.895 18.75 1.04 34.40 2.52
1533 3285 2.251893 CTCGAGAAAGTCAAGGTACGC 58.748 52.381 6.58 0.00 0.00 4.42
1535 3287 1.986378 CGAGAAAGTCAAGGTACGCAG 59.014 52.381 0.00 0.00 0.00 5.18
1538 3290 1.727335 GAAAGTCAAGGTACGCAGAGC 59.273 52.381 0.00 0.00 0.00 4.09
1539 3291 0.679505 AAGTCAAGGTACGCAGAGCA 59.320 50.000 0.00 0.00 0.00 4.26
1542 3294 1.185618 TCAAGGTACGCAGAGCACCT 61.186 55.000 0.00 0.00 44.66 4.00
1543 3295 2.058675 AAGGTACGCAGAGCACCTT 58.941 52.632 2.99 2.99 45.67 3.50
1545 3297 0.320771 AGGTACGCAGAGCACCTTTG 60.321 55.000 0.00 0.00 39.73 2.77
1549 3301 0.877071 ACGCAGAGCACCTTTGATTG 59.123 50.000 0.00 0.00 0.00 2.67
1552 3412 1.135460 GCAGAGCACCTTTGATTGAGC 60.135 52.381 0.00 0.00 0.00 4.26
1555 3415 2.818432 AGAGCACCTTTGATTGAGCTTG 59.182 45.455 0.00 0.00 31.61 4.01
1558 3418 2.669364 CACCTTTGATTGAGCTTGTGC 58.331 47.619 0.00 0.00 40.05 4.57
1580 3450 5.586243 TGCTTTGAAAGGTGATATAGAGTGC 59.414 40.000 7.09 0.00 0.00 4.40
1583 3453 5.939764 TGAAAGGTGATATAGAGTGCACT 57.060 39.130 21.88 21.88 0.00 4.40
1584 3454 7.418337 TTGAAAGGTGATATAGAGTGCACTA 57.582 36.000 21.73 5.36 0.00 2.74
1585 3455 6.806751 TGAAAGGTGATATAGAGTGCACTAC 58.193 40.000 21.73 12.29 0.00 2.73
1586 3456 6.379988 TGAAAGGTGATATAGAGTGCACTACA 59.620 38.462 21.73 11.05 0.00 2.74
1589 3459 6.810911 AGGTGATATAGAGTGCACTACAAAG 58.189 40.000 21.73 0.00 0.00 2.77
1590 3460 6.607600 AGGTGATATAGAGTGCACTACAAAGA 59.392 38.462 21.73 3.11 0.00 2.52
1591 3461 7.124298 AGGTGATATAGAGTGCACTACAAAGAA 59.876 37.037 21.73 0.89 0.00 2.52
1678 3553 1.561542 ACCTTGTTAGCAGATGGAGGG 59.438 52.381 0.15 0.00 0.00 4.30
1695 3570 0.474614 GGGAATCCCTAGGCTCCAAC 59.525 60.000 11.95 4.89 41.34 3.77
1698 3573 1.345715 AATCCCTAGGCTCCAACGGG 61.346 60.000 2.05 0.00 36.21 5.28
1836 3711 0.250234 AAGCTGAGCGCCTCATAACA 59.750 50.000 2.29 0.00 39.92 2.41
1847 3722 2.479560 GCCTCATAACAAACATTCGGGC 60.480 50.000 0.00 0.00 0.00 6.13
1878 3753 4.235079 TCCCGGCTACTTGTTAGTACTA 57.765 45.455 0.00 0.00 35.78 1.82
1879 3754 3.947834 TCCCGGCTACTTGTTAGTACTAC 59.052 47.826 0.91 0.00 35.78 2.73
1962 3838 6.419116 CCATCTTCGTCTATACTGAACATGTG 59.581 42.308 0.00 0.00 0.00 3.21
2054 4576 7.849496 AGATCGAATCGATTCTGAAAAATCTG 58.151 34.615 29.97 14.20 47.00 2.90
2060 4582 4.082787 TCGATTCTGAAAAATCTGGTTGGC 60.083 41.667 0.00 0.00 34.19 4.52
2392 4914 8.999431 GGTGAGGCTTAAATATATTCAAATCGA 58.001 33.333 0.00 0.00 0.00 3.59
2427 4949 8.925161 TTTTGTTTCATTCAAGATTCGAAAGT 57.075 26.923 0.00 0.00 0.00 2.66
2465 4987 2.801679 TGTTGATTGGACGGACGTTTAC 59.198 45.455 0.00 0.00 0.00 2.01
2466 4988 1.700523 TGATTGGACGGACGTTTACG 58.299 50.000 0.00 0.00 46.33 3.18
2531 5053 1.623811 GAAGTTCTCAGGCTGTACCCA 59.376 52.381 15.27 0.00 40.58 4.51
2543 5065 1.126329 TGTACCCACCGGCAACCTTA 61.126 55.000 0.00 0.00 0.00 2.69
2549 5071 0.451783 CACCGGCAACCTTATTCAGC 59.548 55.000 0.00 0.00 0.00 4.26
2552 5074 3.168773 GGCAACCTTATTCAGCCGA 57.831 52.632 0.00 0.00 35.42 5.54
2660 5182 2.929903 GCACATTTGGGGCAGCGAA 61.930 57.895 0.00 0.00 0.00 4.70
2882 5404 7.013178 CCATATACTGTGATAACATTGCAACCA 59.987 37.037 0.00 0.00 0.00 3.67
2983 5535 8.246180 AGTGAATGTGATGATTTTTCATGGTAC 58.754 33.333 0.00 0.00 0.00 3.34
2993 5545 9.801873 ATGATTTTTCATGGTACGAATAAAAGG 57.198 29.630 0.00 0.00 0.00 3.11
3016 5568 4.391155 GTGTGTATAGTGGTTGGGTTTCA 58.609 43.478 0.00 0.00 0.00 2.69
3089 5641 1.683790 GCACACGCCTCGTCATGTAC 61.684 60.000 0.00 0.00 38.32 2.90
3099 5717 5.589192 GCCTCGTCATGTACTTATACAACT 58.411 41.667 0.00 0.00 44.47 3.16
3141 5759 8.466798 ACTAATTACCTCAATTTGGCATACAAC 58.533 33.333 0.00 0.00 39.19 3.32
3145 5763 6.909550 ACCTCAATTTGGCATACAACTTAA 57.090 33.333 0.00 0.00 39.19 1.85
3148 5766 8.374743 ACCTCAATTTGGCATACAACTTAAATT 58.625 29.630 0.00 0.00 39.19 1.82
3372 5990 1.014352 GTCCGTGCTTGAAACACTGT 58.986 50.000 0.00 0.00 35.84 3.55
3373 5991 1.003866 GTCCGTGCTTGAAACACTGTC 60.004 52.381 0.00 0.00 35.84 3.51
3384 6002 5.276461 TGAAACACTGTCTTAGCAGAGAA 57.724 39.130 9.84 0.00 39.62 2.87
3391 6009 8.067751 ACACTGTCTTAGCAGAGAAATATGTA 57.932 34.615 9.84 0.00 39.62 2.29
3394 6012 7.069331 ACTGTCTTAGCAGAGAAATATGTAGCT 59.931 37.037 9.84 0.00 39.62 3.32
3418 6036 3.409026 AGATTGTCACACCAGAGAACC 57.591 47.619 0.00 0.00 0.00 3.62
3436 6054 1.295357 CCGGTGCACGTGCTTGATAA 61.295 55.000 37.59 16.84 42.24 1.75
3464 6087 2.438021 AGTTCACCAAGACTGTAGCCAA 59.562 45.455 0.00 0.00 0.00 4.52
3470 6093 4.460382 CACCAAGACTGTAGCCAAATGATT 59.540 41.667 0.00 0.00 0.00 2.57
3482 6110 6.645790 AGCCAAATGATTTCTAGCATTAGG 57.354 37.500 6.80 0.00 39.34 2.69
3485 6113 7.446625 AGCCAAATGATTTCTAGCATTAGGTAG 59.553 37.037 6.80 0.00 39.34 3.18
3501 6129 2.289565 GGTAGTGCCTTGTATTCTGCC 58.710 52.381 0.00 0.00 0.00 4.85
3513 6141 4.014406 TGTATTCTGCCTCTGTACTCGAA 58.986 43.478 0.00 0.00 0.00 3.71
3514 6142 4.645136 TGTATTCTGCCTCTGTACTCGAAT 59.355 41.667 0.00 0.00 0.00 3.34
3521 6149 2.534298 CTCTGTACTCGAATGTGCCAG 58.466 52.381 0.00 0.00 0.00 4.85
3558 6186 3.093814 TGAGCTCCACGGTACAAGATTA 58.906 45.455 12.15 0.00 0.00 1.75
3561 6189 3.130693 AGCTCCACGGTACAAGATTACTC 59.869 47.826 0.00 0.00 0.00 2.59
3570 6198 6.820152 ACGGTACAAGATTACTCCCATAAAAC 59.180 38.462 0.00 0.00 0.00 2.43
3581 6209 3.230134 TCCCATAAAACACTGCAAAGCT 58.770 40.909 0.00 0.00 0.00 3.74
3603 6231 1.683385 CTAGTGGATCGCCTGTCATCA 59.317 52.381 0.00 0.00 34.31 3.07
3612 6240 1.600638 CCTGTCATCAGCAGAGCCA 59.399 57.895 0.00 0.00 40.09 4.75
3677 6305 3.499737 GCGAATGCACAGTCCCCG 61.500 66.667 0.00 0.00 42.15 5.73
3678 6306 3.499737 CGAATGCACAGTCCCCGC 61.500 66.667 0.00 0.00 0.00 6.13
3679 6307 2.045926 GAATGCACAGTCCCCGCT 60.046 61.111 0.00 0.00 0.00 5.52
3680 6308 2.360350 AATGCACAGTCCCCGCTG 60.360 61.111 0.00 0.00 41.92 5.18
3682 6310 3.612247 ATGCACAGTCCCCGCTGTC 62.612 63.158 0.00 0.00 46.81 3.51
3684 6312 3.625897 CACAGTCCCCGCTGTCCA 61.626 66.667 0.00 0.00 46.81 4.02
3685 6313 2.847234 ACAGTCCCCGCTGTCCAA 60.847 61.111 0.00 0.00 45.63 3.53
3686 6314 2.224159 ACAGTCCCCGCTGTCCAAT 61.224 57.895 0.00 0.00 45.63 3.16
3687 6315 1.746615 CAGTCCCCGCTGTCCAATG 60.747 63.158 0.00 0.00 0.00 2.82
3688 6316 1.918293 AGTCCCCGCTGTCCAATGA 60.918 57.895 0.00 0.00 0.00 2.57
3689 6317 1.224592 GTCCCCGCTGTCCAATGAT 59.775 57.895 0.00 0.00 0.00 2.45
3690 6318 0.394352 GTCCCCGCTGTCCAATGATT 60.394 55.000 0.00 0.00 0.00 2.57
3691 6319 1.134220 GTCCCCGCTGTCCAATGATTA 60.134 52.381 0.00 0.00 0.00 1.75
3692 6320 1.774254 TCCCCGCTGTCCAATGATTAT 59.226 47.619 0.00 0.00 0.00 1.28
3693 6321 2.154462 CCCCGCTGTCCAATGATTATC 58.846 52.381 0.00 0.00 0.00 1.75
3694 6322 2.487086 CCCCGCTGTCCAATGATTATCA 60.487 50.000 0.00 0.00 0.00 2.15
3695 6323 2.810274 CCCGCTGTCCAATGATTATCAG 59.190 50.000 0.29 0.00 0.00 2.90
3696 6324 3.470709 CCGCTGTCCAATGATTATCAGT 58.529 45.455 0.29 0.00 0.00 3.41
3697 6325 4.503123 CCCGCTGTCCAATGATTATCAGTA 60.503 45.833 0.29 0.00 0.00 2.74
3698 6326 4.687948 CCGCTGTCCAATGATTATCAGTAG 59.312 45.833 0.29 0.00 0.00 2.57
3699 6327 4.687948 CGCTGTCCAATGATTATCAGTAGG 59.312 45.833 0.29 2.86 0.00 3.18
3700 6328 4.453819 GCTGTCCAATGATTATCAGTAGGC 59.546 45.833 0.29 0.00 0.00 3.93
3701 6329 5.744300 GCTGTCCAATGATTATCAGTAGGCT 60.744 44.000 0.29 0.00 0.00 4.58
3702 6330 5.858381 TGTCCAATGATTATCAGTAGGCTC 58.142 41.667 0.29 1.31 0.00 4.70
3703 6331 5.366477 TGTCCAATGATTATCAGTAGGCTCA 59.634 40.000 0.29 3.48 0.00 4.26
3704 6332 6.126796 TGTCCAATGATTATCAGTAGGCTCAA 60.127 38.462 0.29 0.00 0.00 3.02
3705 6333 6.426328 GTCCAATGATTATCAGTAGGCTCAAG 59.574 42.308 0.29 0.00 0.00 3.02
3706 6334 5.180868 CCAATGATTATCAGTAGGCTCAAGC 59.819 44.000 0.29 0.00 41.14 4.01
3707 6335 5.557576 ATGATTATCAGTAGGCTCAAGCA 57.442 39.130 4.13 0.00 44.36 3.91
3708 6336 5.357742 TGATTATCAGTAGGCTCAAGCAA 57.642 39.130 4.13 0.00 44.36 3.91
3709 6337 5.363101 TGATTATCAGTAGGCTCAAGCAAG 58.637 41.667 4.13 0.00 44.36 4.01
3710 6338 5.129320 TGATTATCAGTAGGCTCAAGCAAGA 59.871 40.000 4.13 0.00 44.36 3.02
3711 6339 3.988976 ATCAGTAGGCTCAAGCAAGAA 57.011 42.857 4.13 0.00 44.36 2.52
3712 6340 3.045601 TCAGTAGGCTCAAGCAAGAAC 57.954 47.619 4.13 0.00 44.36 3.01
3713 6341 2.634940 TCAGTAGGCTCAAGCAAGAACT 59.365 45.455 4.13 0.00 44.36 3.01
3714 6342 3.832490 TCAGTAGGCTCAAGCAAGAACTA 59.168 43.478 4.13 0.00 44.36 2.24
3715 6343 4.081972 TCAGTAGGCTCAAGCAAGAACTAG 60.082 45.833 4.13 0.00 44.36 2.57
3716 6344 2.106477 AGGCTCAAGCAAGAACTAGC 57.894 50.000 4.13 0.00 44.36 3.42
3717 6345 1.349026 AGGCTCAAGCAAGAACTAGCA 59.651 47.619 4.13 0.00 44.36 3.49
3718 6346 1.736681 GGCTCAAGCAAGAACTAGCAG 59.263 52.381 4.13 0.00 44.36 4.24
3719 6347 2.613977 GGCTCAAGCAAGAACTAGCAGA 60.614 50.000 4.13 0.00 44.36 4.26
3720 6348 2.414825 GCTCAAGCAAGAACTAGCAGAC 59.585 50.000 0.00 0.00 41.59 3.51
3721 6349 3.864160 GCTCAAGCAAGAACTAGCAGACT 60.864 47.826 0.00 0.00 41.59 3.24
3722 6350 4.314121 CTCAAGCAAGAACTAGCAGACTT 58.686 43.478 0.00 0.00 0.00 3.01
3723 6351 4.708177 TCAAGCAAGAACTAGCAGACTTT 58.292 39.130 0.00 0.00 0.00 2.66
3724 6352 4.512944 TCAAGCAAGAACTAGCAGACTTTG 59.487 41.667 0.00 0.00 0.00 2.77
3725 6353 4.078639 AGCAAGAACTAGCAGACTTTGT 57.921 40.909 0.00 0.00 0.00 2.83
3726 6354 4.455606 AGCAAGAACTAGCAGACTTTGTT 58.544 39.130 0.00 0.00 0.00 2.83
3727 6355 4.274459 AGCAAGAACTAGCAGACTTTGTTG 59.726 41.667 0.00 0.00 0.00 3.33
3728 6356 4.273480 GCAAGAACTAGCAGACTTTGTTGA 59.727 41.667 3.48 0.00 0.00 3.18
3729 6357 5.742446 CAAGAACTAGCAGACTTTGTTGAC 58.258 41.667 0.00 0.00 0.00 3.18
3730 6358 4.381411 AGAACTAGCAGACTTTGTTGACC 58.619 43.478 0.00 0.00 0.00 4.02
3731 6359 2.755650 ACTAGCAGACTTTGTTGACCG 58.244 47.619 0.00 0.00 0.00 4.79
3732 6360 1.461127 CTAGCAGACTTTGTTGACCGC 59.539 52.381 0.00 0.00 0.00 5.68
3733 6361 0.463654 AGCAGACTTTGTTGACCGCA 60.464 50.000 0.00 0.00 0.00 5.69
3734 6362 0.593128 GCAGACTTTGTTGACCGCAT 59.407 50.000 0.00 0.00 0.00 4.73
3735 6363 1.804151 GCAGACTTTGTTGACCGCATA 59.196 47.619 0.00 0.00 0.00 3.14
3736 6364 2.225491 GCAGACTTTGTTGACCGCATAA 59.775 45.455 0.00 0.00 0.00 1.90
3737 6365 3.304391 GCAGACTTTGTTGACCGCATAAA 60.304 43.478 0.00 0.00 0.00 1.40
3738 6366 4.791411 GCAGACTTTGTTGACCGCATAAAA 60.791 41.667 0.00 0.00 0.00 1.52
3739 6367 5.277825 CAGACTTTGTTGACCGCATAAAAA 58.722 37.500 0.00 0.00 0.00 1.94
3763 6391 9.751542 AAAAGTATCAGGACGAGTTAATATGAG 57.248 33.333 0.00 0.00 0.00 2.90
3764 6392 7.455641 AGTATCAGGACGAGTTAATATGAGG 57.544 40.000 0.00 0.00 0.00 3.86
3765 6393 7.005296 AGTATCAGGACGAGTTAATATGAGGT 58.995 38.462 0.00 0.00 0.00 3.85
3766 6394 8.162085 AGTATCAGGACGAGTTAATATGAGGTA 58.838 37.037 0.00 0.00 0.00 3.08
3767 6395 6.630444 TCAGGACGAGTTAATATGAGGTAC 57.370 41.667 0.00 0.00 0.00 3.34
3769 6397 7.512130 TCAGGACGAGTTAATATGAGGTACTA 58.488 38.462 0.00 0.00 41.55 1.82
3770 6398 7.443575 TCAGGACGAGTTAATATGAGGTACTAC 59.556 40.741 0.00 0.00 41.55 2.73
3771 6399 7.228108 CAGGACGAGTTAATATGAGGTACTACA 59.772 40.741 0.00 0.00 41.55 2.74
3772 6400 7.444792 AGGACGAGTTAATATGAGGTACTACAG 59.555 40.741 0.00 0.00 41.55 2.74
3773 6401 7.228308 GGACGAGTTAATATGAGGTACTACAGT 59.772 40.741 0.00 0.00 41.55 3.55
3774 6402 7.928103 ACGAGTTAATATGAGGTACTACAGTG 58.072 38.462 0.00 0.00 41.55 3.66
3775 6403 6.856938 CGAGTTAATATGAGGTACTACAGTGC 59.143 42.308 0.00 0.00 41.55 4.40
3776 6404 7.255173 CGAGTTAATATGAGGTACTACAGTGCT 60.255 40.741 0.00 0.00 41.55 4.40
3777 6405 7.942990 AGTTAATATGAGGTACTACAGTGCTC 58.057 38.462 0.00 0.00 41.55 4.26
3778 6406 5.793030 AATATGAGGTACTACAGTGCTCC 57.207 43.478 0.00 0.00 41.55 4.70
3779 6407 2.597578 TGAGGTACTACAGTGCTCCA 57.402 50.000 0.00 0.00 41.55 3.86
3780 6408 2.884320 TGAGGTACTACAGTGCTCCAA 58.116 47.619 0.00 0.00 41.55 3.53
3781 6409 2.561419 TGAGGTACTACAGTGCTCCAAC 59.439 50.000 0.00 0.00 41.55 3.77
3782 6410 1.900486 AGGTACTACAGTGCTCCAACC 59.100 52.381 0.00 0.00 36.02 3.77
3783 6411 1.621814 GGTACTACAGTGCTCCAACCA 59.378 52.381 0.00 0.00 0.00 3.67
3784 6412 2.236395 GGTACTACAGTGCTCCAACCAT 59.764 50.000 0.00 0.00 0.00 3.55
3785 6413 3.449737 GGTACTACAGTGCTCCAACCATA 59.550 47.826 0.00 0.00 0.00 2.74
3786 6414 3.895232 ACTACAGTGCTCCAACCATAG 57.105 47.619 0.00 0.00 0.00 2.23
3787 6415 3.173965 ACTACAGTGCTCCAACCATAGT 58.826 45.455 0.00 0.00 0.00 2.12
3788 6416 2.479566 ACAGTGCTCCAACCATAGTG 57.520 50.000 0.00 0.00 0.00 2.74
3789 6417 1.089920 CAGTGCTCCAACCATAGTGC 58.910 55.000 0.00 0.00 0.00 4.40
3790 6418 0.391661 AGTGCTCCAACCATAGTGCG 60.392 55.000 0.00 0.00 0.00 5.34
3791 6419 1.078497 TGCTCCAACCATAGTGCGG 60.078 57.895 0.00 0.00 0.00 5.69
3792 6420 1.078426 GCTCCAACCATAGTGCGGT 60.078 57.895 0.00 0.00 38.85 5.68
3793 6421 0.177141 GCTCCAACCATAGTGCGGTA 59.823 55.000 0.00 0.00 34.99 4.02
3794 6422 1.935933 CTCCAACCATAGTGCGGTAC 58.064 55.000 0.00 0.00 34.99 3.34
3795 6423 0.538118 TCCAACCATAGTGCGGTACC 59.462 55.000 0.16 0.16 34.99 3.34
3796 6424 0.539986 CCAACCATAGTGCGGTACCT 59.460 55.000 10.90 0.00 34.99 3.08
3797 6425 1.758280 CCAACCATAGTGCGGTACCTA 59.242 52.381 10.90 0.00 34.99 3.08
3798 6426 2.223971 CCAACCATAGTGCGGTACCTAG 60.224 54.545 10.90 0.00 34.99 3.02
3799 6427 2.429610 CAACCATAGTGCGGTACCTAGT 59.570 50.000 10.90 4.54 34.99 2.57
3800 6428 2.029623 ACCATAGTGCGGTACCTAGTG 58.970 52.381 10.90 0.00 34.02 2.74
3801 6429 1.340248 CCATAGTGCGGTACCTAGTGG 59.660 57.143 10.90 5.86 39.83 4.00
3814 6442 4.332683 ACCTAGTGGTGTCCTCAATAGA 57.667 45.455 0.00 0.00 46.51 1.98
3815 6443 4.884961 ACCTAGTGGTGTCCTCAATAGAT 58.115 43.478 0.00 0.00 46.51 1.98
3816 6444 6.027025 ACCTAGTGGTGTCCTCAATAGATA 57.973 41.667 0.00 0.00 46.51 1.98
3817 6445 6.441222 ACCTAGTGGTGTCCTCAATAGATAA 58.559 40.000 0.00 0.00 46.51 1.75
3818 6446 6.901300 ACCTAGTGGTGTCCTCAATAGATAAA 59.099 38.462 0.00 0.00 46.51 1.40
3819 6447 7.402071 ACCTAGTGGTGTCCTCAATAGATAAAA 59.598 37.037 0.00 0.00 46.51 1.52
3820 6448 7.928706 CCTAGTGGTGTCCTCAATAGATAAAAG 59.071 40.741 0.00 0.00 35.55 2.27
3821 6449 7.259088 AGTGGTGTCCTCAATAGATAAAAGT 57.741 36.000 0.00 0.00 0.00 2.66
3822 6450 7.106239 AGTGGTGTCCTCAATAGATAAAAGTG 58.894 38.462 0.00 0.00 0.00 3.16
3823 6451 6.879458 GTGGTGTCCTCAATAGATAAAAGTGT 59.121 38.462 0.00 0.00 0.00 3.55
3824 6452 6.878923 TGGTGTCCTCAATAGATAAAAGTGTG 59.121 38.462 0.00 0.00 0.00 3.82
3825 6453 6.183360 GGTGTCCTCAATAGATAAAAGTGTGC 60.183 42.308 0.00 0.00 0.00 4.57
3826 6454 5.880332 TGTCCTCAATAGATAAAAGTGTGCC 59.120 40.000 0.00 0.00 0.00 5.01
3827 6455 6.116126 GTCCTCAATAGATAAAAGTGTGCCT 58.884 40.000 0.00 0.00 0.00 4.75
3828 6456 6.258947 GTCCTCAATAGATAAAAGTGTGCCTC 59.741 42.308 0.00 0.00 0.00 4.70
3829 6457 5.529060 CCTCAATAGATAAAAGTGTGCCTCC 59.471 44.000 0.00 0.00 0.00 4.30
3830 6458 6.313519 TCAATAGATAAAAGTGTGCCTCCT 57.686 37.500 0.00 0.00 0.00 3.69
3831 6459 6.721318 TCAATAGATAAAAGTGTGCCTCCTT 58.279 36.000 0.00 0.00 0.00 3.36
3832 6460 6.599244 TCAATAGATAAAAGTGTGCCTCCTTG 59.401 38.462 0.00 0.00 0.00 3.61
3833 6461 4.640771 AGATAAAAGTGTGCCTCCTTGA 57.359 40.909 0.00 0.00 0.00 3.02
3834 6462 4.327680 AGATAAAAGTGTGCCTCCTTGAC 58.672 43.478 0.00 0.00 0.00 3.18
3835 6463 1.308998 AAAAGTGTGCCTCCTTGACG 58.691 50.000 0.00 0.00 0.00 4.35
3836 6464 0.468226 AAAGTGTGCCTCCTTGACGA 59.532 50.000 0.00 0.00 0.00 4.20
3837 6465 0.034059 AAGTGTGCCTCCTTGACGAG 59.966 55.000 0.00 0.00 0.00 4.18
3838 6466 0.827925 AGTGTGCCTCCTTGACGAGA 60.828 55.000 0.00 0.00 30.97 4.04
3839 6467 0.033504 GTGTGCCTCCTTGACGAGAA 59.966 55.000 0.00 0.00 30.97 2.87
3840 6468 0.756294 TGTGCCTCCTTGACGAGAAA 59.244 50.000 0.00 0.00 30.97 2.52
3841 6469 1.270305 TGTGCCTCCTTGACGAGAAAG 60.270 52.381 0.00 0.00 30.97 2.62
3842 6470 0.320771 TGCCTCCTTGACGAGAAAGC 60.321 55.000 0.00 0.00 30.97 3.51
3843 6471 0.036858 GCCTCCTTGACGAGAAAGCT 60.037 55.000 0.00 0.00 30.97 3.74
3844 6472 1.609320 GCCTCCTTGACGAGAAAGCTT 60.609 52.381 0.00 0.00 30.97 3.74
3845 6473 2.072298 CCTCCTTGACGAGAAAGCTTG 58.928 52.381 0.00 0.00 30.97 4.01
3846 6474 2.548920 CCTCCTTGACGAGAAAGCTTGT 60.549 50.000 0.00 0.00 41.53 3.16
3854 6482 4.323553 ACGAGAAAGCTTGTCACTAACT 57.676 40.909 0.00 0.00 33.31 2.24
3855 6483 4.051922 ACGAGAAAGCTTGTCACTAACTG 58.948 43.478 0.00 0.00 33.31 3.16
3856 6484 4.202121 ACGAGAAAGCTTGTCACTAACTGA 60.202 41.667 0.00 0.00 33.31 3.41
3867 6495 4.696899 TCACTAACTGACATAGGTGACG 57.303 45.455 0.00 0.00 0.00 4.35
3868 6496 4.077108 TCACTAACTGACATAGGTGACGT 58.923 43.478 0.00 0.00 0.00 4.34
3869 6497 5.247862 TCACTAACTGACATAGGTGACGTA 58.752 41.667 0.00 0.00 0.00 3.57
3870 6498 5.884232 TCACTAACTGACATAGGTGACGTAT 59.116 40.000 0.00 0.00 0.00 3.06
3871 6499 6.037940 TCACTAACTGACATAGGTGACGTATC 59.962 42.308 0.00 0.00 0.00 2.24
3872 6500 6.038382 CACTAACTGACATAGGTGACGTATCT 59.962 42.308 0.00 0.00 0.00 1.98
3873 6501 7.226128 CACTAACTGACATAGGTGACGTATCTA 59.774 40.741 0.00 0.00 0.00 1.98
3874 6502 6.621316 AACTGACATAGGTGACGTATCTAG 57.379 41.667 0.00 0.00 0.00 2.43
3875 6503 4.515944 ACTGACATAGGTGACGTATCTAGC 59.484 45.833 0.00 0.00 0.00 3.42
3876 6504 4.715713 TGACATAGGTGACGTATCTAGCT 58.284 43.478 0.00 0.00 0.00 3.32
3877 6505 5.131067 TGACATAGGTGACGTATCTAGCTT 58.869 41.667 0.00 0.00 0.00 3.74
3878 6506 6.293698 TGACATAGGTGACGTATCTAGCTTA 58.706 40.000 0.00 0.00 0.00 3.09
3879 6507 6.204301 TGACATAGGTGACGTATCTAGCTTAC 59.796 42.308 0.00 0.00 0.00 2.34
3880 6508 6.060136 ACATAGGTGACGTATCTAGCTTACA 58.940 40.000 0.00 0.00 0.00 2.41
3881 6509 6.205076 ACATAGGTGACGTATCTAGCTTACAG 59.795 42.308 0.00 0.00 0.00 2.74
3882 6510 4.525024 AGGTGACGTATCTAGCTTACAGT 58.475 43.478 0.00 0.00 0.00 3.55
3883 6511 5.678583 AGGTGACGTATCTAGCTTACAGTA 58.321 41.667 0.00 0.00 0.00 2.74
3884 6512 6.297582 AGGTGACGTATCTAGCTTACAGTAT 58.702 40.000 0.00 0.00 0.00 2.12
3885 6513 6.205076 AGGTGACGTATCTAGCTTACAGTATG 59.795 42.308 0.00 0.00 46.00 2.39
3901 6529 5.890110 CAGTATGTCATACCTGCTTTACG 57.110 43.478 17.64 0.00 36.40 3.18
3902 6530 5.588240 CAGTATGTCATACCTGCTTTACGA 58.412 41.667 17.64 0.00 36.40 3.43
3903 6531 6.040247 CAGTATGTCATACCTGCTTTACGAA 58.960 40.000 17.64 0.00 36.40 3.85
3904 6532 6.199154 CAGTATGTCATACCTGCTTTACGAAG 59.801 42.308 17.64 0.00 36.40 3.79
3905 6533 7.175423 AGTATGTCATACCTGCTTTACGAAGC 61.175 42.308 17.64 4.27 45.63 3.86
3917 6545 5.530519 CTTTACGAAGCAAATCAGCTACA 57.469 39.130 0.00 0.00 45.89 2.74
3918 6546 6.111768 CTTTACGAAGCAAATCAGCTACAT 57.888 37.500 0.00 0.00 45.89 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 6.695278 GCTTGAACAGTAGAGATGAGTGTATC 59.305 42.308 0.00 0.00 30.18 2.24
67 68 2.537959 AATGAGGGGTGGGGGCTT 60.538 61.111 0.00 0.00 0.00 4.35
82 83 1.184970 CCTCAACCAAACCGCCCAAT 61.185 55.000 0.00 0.00 0.00 3.16
98 99 3.471680 AGCATCTAAAATCGAAGGCCTC 58.528 45.455 5.23 0.00 0.00 4.70
150 151 2.040145 TGAAGGAGGTGCACATGATCAA 59.960 45.455 20.43 0.00 0.00 2.57
152 153 2.408271 TGAAGGAGGTGCACATGATC 57.592 50.000 20.43 9.76 0.00 2.92
321 352 8.288913 GCACCATAAAAAGCAAACAATGTTTAT 58.711 29.630 11.33 0.57 31.56 1.40
351 382 1.806758 GACCACATGGCAAATGCGC 60.807 57.895 0.00 0.00 43.26 6.09
450 485 5.175673 GGCAAACAAGCTAACACAATTCTTC 59.824 40.000 0.00 0.00 34.17 2.87
571 2303 4.506654 ACGCCGTGTTTATATTCAGCTTAG 59.493 41.667 0.00 0.00 0.00 2.18
589 2321 2.153247 GCGATATCTAAAGTCAACGCCG 59.847 50.000 0.34 0.00 39.13 6.46
606 2338 6.071108 AGTGCATATATAACCTGAGAAGCGAT 60.071 38.462 0.00 0.00 0.00 4.58
681 2413 6.427974 CATTGATTGTTGCTAGCAGTATGAG 58.572 40.000 18.45 0.49 39.69 2.90
767 2502 3.821748 AGGAACTTGGTGGAGAAGAAAC 58.178 45.455 0.00 0.00 27.25 2.78
791 2526 2.575461 GCCATGTTGCCTTGCTCC 59.425 61.111 0.00 0.00 0.00 4.70
871 2610 4.204028 AGGTGTTGCCCGGTTGCT 62.204 61.111 0.00 0.00 38.26 3.91
882 2621 8.849543 TGTAAAGGTTATATAGAGGAGGTGTT 57.150 34.615 0.00 0.00 0.00 3.32
903 2642 5.765576 TTTACTGGAGCTGGGTAATGTAA 57.234 39.130 0.00 0.00 0.00 2.41
990 2742 0.615331 GAACCACCATGCCTCTCTCA 59.385 55.000 0.00 0.00 0.00 3.27
1004 2756 0.679505 CGTCACTCCTCCAAGAACCA 59.320 55.000 0.00 0.00 0.00 3.67
1210 2962 2.674380 CCAGGCCTCCTTGTGCAC 60.674 66.667 10.75 10.75 0.00 4.57
1374 3126 2.910688 ACTTGTTGGACATGACGTCT 57.089 45.000 17.92 0.00 44.70 4.18
1470 3222 1.669999 GCCTATGCTTGGCCCACTTG 61.670 60.000 0.00 0.00 44.32 3.16
1521 3273 0.038159 GTGCTCTGCGTACCTTGACT 60.038 55.000 0.00 0.00 0.00 3.41
1533 3285 2.434428 AGCTCAATCAAAGGTGCTCTG 58.566 47.619 0.00 0.00 0.00 3.35
1535 3287 2.555757 ACAAGCTCAATCAAAGGTGCTC 59.444 45.455 0.00 0.00 0.00 4.26
1538 3290 2.669364 GCACAAGCTCAATCAAAGGTG 58.331 47.619 0.00 0.00 37.91 4.00
1552 3412 7.335422 ACTCTATATCACCTTTCAAAGCACAAG 59.665 37.037 0.00 0.00 0.00 3.16
1555 3415 6.457528 GCACTCTATATCACCTTTCAAAGCAC 60.458 42.308 0.00 0.00 0.00 4.40
1558 3418 6.820656 AGTGCACTCTATATCACCTTTCAAAG 59.179 38.462 15.25 0.00 0.00 2.77
1589 3459 4.560035 CACGCACATTCCAAAGATCAATTC 59.440 41.667 0.00 0.00 0.00 2.17
1590 3460 4.022068 ACACGCACATTCCAAAGATCAATT 60.022 37.500 0.00 0.00 0.00 2.32
1591 3461 3.507233 ACACGCACATTCCAAAGATCAAT 59.493 39.130 0.00 0.00 0.00 2.57
1678 3553 0.106894 CCGTTGGAGCCTAGGGATTC 59.893 60.000 11.72 0.00 0.00 2.52
1695 3570 4.147449 TCCAGCTCGCATGACCCG 62.147 66.667 0.00 0.00 0.00 5.28
1698 3573 1.291877 AAACGTCCAGCTCGCATGAC 61.292 55.000 0.00 0.00 0.00 3.06
1836 3711 0.605319 TGAGAAGCGCCCGAATGTTT 60.605 50.000 2.29 0.00 0.00 2.83
1847 3722 0.876342 GTAGCCGGGAATGAGAAGCG 60.876 60.000 2.18 0.00 0.00 4.68
1928 3804 8.353684 CAGTATAGACGAAGATGGAACTTACAT 58.646 37.037 0.00 0.00 0.00 2.29
1929 3805 7.555195 TCAGTATAGACGAAGATGGAACTTACA 59.445 37.037 0.00 0.00 0.00 2.41
1962 3838 2.551032 ACCTGAAAACGAAAATCCCGTC 59.449 45.455 0.00 0.00 39.57 4.79
2054 4576 2.224257 TGCTTGGATTCTTTTGCCAACC 60.224 45.455 0.00 0.00 36.80 3.77
2060 4582 6.847956 TGTTTCATTGCTTGGATTCTTTTG 57.152 33.333 0.00 0.00 0.00 2.44
2166 4688 2.679837 CGTCTTCAATTGTCATCCCCTG 59.320 50.000 5.13 0.00 0.00 4.45
2167 4689 2.305927 ACGTCTTCAATTGTCATCCCCT 59.694 45.455 5.13 0.00 0.00 4.79
2392 4914 7.711772 TCTTGAATGAAACAAAATCAGTTGCAT 59.288 29.630 0.00 0.00 45.02 3.96
2427 4949 4.650734 TCAACAAGCTGATGTGGTTGATA 58.349 39.130 12.38 0.00 45.11 2.15
2465 4987 1.931551 CCGACACAACACAGGAACG 59.068 57.895 0.00 0.00 0.00 3.95
2466 4988 1.092921 TGCCGACACAACACAGGAAC 61.093 55.000 0.00 0.00 0.00 3.62
2531 5053 0.679960 GGCTGAATAAGGTTGCCGGT 60.680 55.000 1.90 0.00 33.96 5.28
2543 5065 4.825085 TCCTTGTAAGTTTTTCGGCTGAAT 59.175 37.500 9.22 0.00 33.20 2.57
2549 5071 5.001232 TCCATCTCCTTGTAAGTTTTTCGG 58.999 41.667 0.00 0.00 0.00 4.30
2552 5074 7.177392 CCAATCTCCATCTCCTTGTAAGTTTTT 59.823 37.037 0.00 0.00 0.00 1.94
2660 5182 1.980765 TCTGGCTTGAACTCATGGACT 59.019 47.619 0.00 0.00 0.00 3.85
2692 5214 1.077429 GATGCCTTGGAGACCCCAC 60.077 63.158 0.00 0.00 46.62 4.61
2882 5404 5.128171 AAGATTTATCTGTGCACCATGCATT 59.872 36.000 15.69 0.00 45.72 3.56
2983 5535 6.110707 ACCACTATACACACCCTTTTATTCG 58.889 40.000 0.00 0.00 0.00 3.34
2993 5545 3.428413 AACCCAACCACTATACACACC 57.572 47.619 0.00 0.00 0.00 4.16
3016 5568 6.908240 TGCTTAGCAGTAACTGAGTGAAACTT 60.908 38.462 1.39 0.00 40.29 2.66
3120 5738 6.909550 AAGTTGTATGCCAAATTGAGGTAA 57.090 33.333 0.00 0.00 39.69 2.85
3152 5770 5.184287 AGGGGGTATGTTAAACAAACGAATG 59.816 40.000 0.00 0.00 41.30 2.67
3315 5933 9.965902 AGGTTGACTTCTATTTTGTATGAGAAT 57.034 29.630 0.00 0.00 0.00 2.40
3372 5990 6.551227 TGGAGCTACATATTTCTCTGCTAAGA 59.449 38.462 0.00 0.00 0.00 2.10
3373 5991 6.753180 TGGAGCTACATATTTCTCTGCTAAG 58.247 40.000 0.00 0.00 0.00 2.18
3384 6002 6.540189 GTGTGACAATCTTGGAGCTACATATT 59.460 38.462 0.00 0.00 0.00 1.28
3391 6009 1.421268 TGGTGTGACAATCTTGGAGCT 59.579 47.619 0.00 0.00 0.00 4.09
3394 6012 2.972021 TCTCTGGTGTGACAATCTTGGA 59.028 45.455 0.00 0.00 0.00 3.53
3418 6036 0.515127 TTTATCAAGCACGTGCACCG 59.485 50.000 39.21 26.59 45.16 4.94
3436 6054 3.054361 ACAGTCTTGGTGAACTTGGAGTT 60.054 43.478 0.00 0.00 41.95 3.01
3464 6087 6.712547 GGCACTACCTAATGCTAGAAATCATT 59.287 38.462 0.00 0.00 41.74 2.57
3482 6110 3.118592 AGAGGCAGAATACAAGGCACTAC 60.119 47.826 0.00 0.00 38.49 2.73
3485 6113 2.012673 CAGAGGCAGAATACAAGGCAC 58.987 52.381 0.00 0.00 0.00 5.01
3501 6129 2.094494 ACTGGCACATTCGAGTACAGAG 60.094 50.000 12.59 0.00 38.20 3.35
3521 6149 2.353839 CACGCAAGCAAGCCACAC 60.354 61.111 0.00 0.00 45.62 3.82
3546 6174 6.819649 TGTTTTATGGGAGTAATCTTGTACCG 59.180 38.462 0.00 0.00 0.00 4.02
3548 6176 8.665685 CAGTGTTTTATGGGAGTAATCTTGTAC 58.334 37.037 0.00 0.00 0.00 2.90
3549 6177 7.335924 GCAGTGTTTTATGGGAGTAATCTTGTA 59.664 37.037 0.00 0.00 0.00 2.41
3558 6186 3.005791 GCTTTGCAGTGTTTTATGGGAGT 59.994 43.478 0.00 0.00 0.00 3.85
3561 6189 3.665745 AGCTTTGCAGTGTTTTATGGG 57.334 42.857 0.00 0.00 0.00 4.00
3570 6198 3.319137 TCCACTAGTAGCTTTGCAGTG 57.681 47.619 0.00 0.73 37.06 3.66
3581 6209 2.430248 TGACAGGCGATCCACTAGTA 57.570 50.000 0.00 0.00 33.74 1.82
3603 6231 2.274760 GATTGGGCTGGCTCTGCT 59.725 61.111 0.00 0.00 0.00 4.24
3612 6240 2.519771 TTTCAGATGCAGATTGGGCT 57.480 45.000 0.00 0.00 0.00 5.19
3675 6303 3.470709 ACTGATAATCATTGGACAGCGG 58.529 45.455 0.00 0.00 0.00 5.52
3676 6304 4.687948 CCTACTGATAATCATTGGACAGCG 59.312 45.833 0.00 0.00 0.00 5.18
3677 6305 4.453819 GCCTACTGATAATCATTGGACAGC 59.546 45.833 0.00 0.00 0.00 4.40
3678 6306 5.862845 AGCCTACTGATAATCATTGGACAG 58.137 41.667 0.00 0.00 0.00 3.51
3679 6307 5.366477 TGAGCCTACTGATAATCATTGGACA 59.634 40.000 0.00 0.00 0.00 4.02
3680 6308 5.858381 TGAGCCTACTGATAATCATTGGAC 58.142 41.667 0.00 0.00 0.00 4.02
3681 6309 6.499106 TTGAGCCTACTGATAATCATTGGA 57.501 37.500 0.00 0.00 0.00 3.53
3682 6310 5.180868 GCTTGAGCCTACTGATAATCATTGG 59.819 44.000 0.00 0.00 34.31 3.16
3683 6311 5.761726 TGCTTGAGCCTACTGATAATCATTG 59.238 40.000 0.00 0.00 41.18 2.82
3684 6312 5.933617 TGCTTGAGCCTACTGATAATCATT 58.066 37.500 0.00 0.00 41.18 2.57
3685 6313 5.557576 TGCTTGAGCCTACTGATAATCAT 57.442 39.130 0.00 0.00 41.18 2.45
3686 6314 5.129320 TCTTGCTTGAGCCTACTGATAATCA 59.871 40.000 0.00 0.00 41.18 2.57
3687 6315 5.605534 TCTTGCTTGAGCCTACTGATAATC 58.394 41.667 0.00 0.00 41.18 1.75
3688 6316 5.620738 TCTTGCTTGAGCCTACTGATAAT 57.379 39.130 0.00 0.00 41.18 1.28
3689 6317 5.046304 AGTTCTTGCTTGAGCCTACTGATAA 60.046 40.000 0.00 0.00 41.18 1.75
3690 6318 4.467795 AGTTCTTGCTTGAGCCTACTGATA 59.532 41.667 0.00 0.00 41.18 2.15
3691 6319 3.262915 AGTTCTTGCTTGAGCCTACTGAT 59.737 43.478 0.00 0.00 41.18 2.90
3692 6320 2.634940 AGTTCTTGCTTGAGCCTACTGA 59.365 45.455 0.00 0.00 41.18 3.41
3693 6321 3.051081 AGTTCTTGCTTGAGCCTACTG 57.949 47.619 0.00 0.00 41.18 2.74
3694 6322 3.368948 GCTAGTTCTTGCTTGAGCCTACT 60.369 47.826 0.00 1.95 41.18 2.57
3695 6323 2.933260 GCTAGTTCTTGCTTGAGCCTAC 59.067 50.000 0.00 0.00 41.18 3.18
3696 6324 2.567169 TGCTAGTTCTTGCTTGAGCCTA 59.433 45.455 0.00 0.00 41.18 3.93
3697 6325 1.349026 TGCTAGTTCTTGCTTGAGCCT 59.651 47.619 0.00 0.00 41.18 4.58
3698 6326 1.736681 CTGCTAGTTCTTGCTTGAGCC 59.263 52.381 0.00 0.00 41.18 4.70
3699 6327 2.414825 GTCTGCTAGTTCTTGCTTGAGC 59.585 50.000 7.60 0.00 42.50 4.26
3700 6328 3.924144 AGTCTGCTAGTTCTTGCTTGAG 58.076 45.455 7.60 0.00 0.00 3.02
3701 6329 4.342862 AAGTCTGCTAGTTCTTGCTTGA 57.657 40.909 7.60 4.00 0.00 3.02
3702 6330 4.274459 ACAAAGTCTGCTAGTTCTTGCTTG 59.726 41.667 7.60 5.96 0.00 4.01
3703 6331 4.455606 ACAAAGTCTGCTAGTTCTTGCTT 58.544 39.130 7.60 0.00 0.00 3.91
3704 6332 4.078639 ACAAAGTCTGCTAGTTCTTGCT 57.921 40.909 7.60 0.00 0.00 3.91
3705 6333 4.273480 TCAACAAAGTCTGCTAGTTCTTGC 59.727 41.667 0.00 0.00 0.00 4.01
3706 6334 5.277538 GGTCAACAAAGTCTGCTAGTTCTTG 60.278 44.000 0.00 0.00 0.00 3.02
3707 6335 4.816925 GGTCAACAAAGTCTGCTAGTTCTT 59.183 41.667 0.00 0.00 0.00 2.52
3708 6336 4.381411 GGTCAACAAAGTCTGCTAGTTCT 58.619 43.478 0.00 0.00 0.00 3.01
3709 6337 3.184581 CGGTCAACAAAGTCTGCTAGTTC 59.815 47.826 0.00 0.00 0.00 3.01
3710 6338 3.131396 CGGTCAACAAAGTCTGCTAGTT 58.869 45.455 0.00 0.00 0.00 2.24
3711 6339 2.755650 CGGTCAACAAAGTCTGCTAGT 58.244 47.619 0.00 0.00 0.00 2.57
3712 6340 1.461127 GCGGTCAACAAAGTCTGCTAG 59.539 52.381 0.00 0.00 0.00 3.42
3713 6341 1.202592 TGCGGTCAACAAAGTCTGCTA 60.203 47.619 0.00 0.00 33.88 3.49
3714 6342 0.463654 TGCGGTCAACAAAGTCTGCT 60.464 50.000 0.00 0.00 33.88 4.24
3715 6343 0.593128 ATGCGGTCAACAAAGTCTGC 59.407 50.000 0.00 0.00 0.00 4.26
3716 6344 4.481930 TTTATGCGGTCAACAAAGTCTG 57.518 40.909 0.00 0.00 0.00 3.51
3717 6345 5.508200 TTTTTATGCGGTCAACAAAGTCT 57.492 34.783 0.00 0.00 0.00 3.24
3737 6365 9.751542 CTCATATTAACTCGTCCTGATACTTTT 57.248 33.333 0.00 0.00 0.00 2.27
3738 6366 8.361139 CCTCATATTAACTCGTCCTGATACTTT 58.639 37.037 0.00 0.00 0.00 2.66
3739 6367 7.506261 ACCTCATATTAACTCGTCCTGATACTT 59.494 37.037 0.00 0.00 0.00 2.24
3740 6368 7.005296 ACCTCATATTAACTCGTCCTGATACT 58.995 38.462 0.00 0.00 0.00 2.12
3741 6369 7.216973 ACCTCATATTAACTCGTCCTGATAC 57.783 40.000 0.00 0.00 0.00 2.24
3742 6370 8.162085 AGTACCTCATATTAACTCGTCCTGATA 58.838 37.037 0.00 0.00 0.00 2.15
3743 6371 7.005296 AGTACCTCATATTAACTCGTCCTGAT 58.995 38.462 0.00 0.00 0.00 2.90
3744 6372 6.363065 AGTACCTCATATTAACTCGTCCTGA 58.637 40.000 0.00 0.00 0.00 3.86
3745 6373 6.636562 AGTACCTCATATTAACTCGTCCTG 57.363 41.667 0.00 0.00 0.00 3.86
3746 6374 7.285566 TGTAGTACCTCATATTAACTCGTCCT 58.714 38.462 0.00 0.00 0.00 3.85
3747 6375 7.228308 ACTGTAGTACCTCATATTAACTCGTCC 59.772 40.741 0.00 0.00 0.00 4.79
3748 6376 8.068977 CACTGTAGTACCTCATATTAACTCGTC 58.931 40.741 0.00 0.00 0.00 4.20
3749 6377 7.468357 GCACTGTAGTACCTCATATTAACTCGT 60.468 40.741 0.00 0.00 0.00 4.18
3750 6378 6.856938 GCACTGTAGTACCTCATATTAACTCG 59.143 42.308 0.00 0.00 0.00 4.18
3751 6379 7.942990 AGCACTGTAGTACCTCATATTAACTC 58.057 38.462 0.00 0.00 0.00 3.01
3752 6380 7.014422 GGAGCACTGTAGTACCTCATATTAACT 59.986 40.741 0.00 0.00 31.32 2.24
3753 6381 7.146648 GGAGCACTGTAGTACCTCATATTAAC 58.853 42.308 0.00 0.00 31.32 2.01
3754 6382 6.837048 TGGAGCACTGTAGTACCTCATATTAA 59.163 38.462 0.00 0.00 31.32 1.40
3755 6383 6.370453 TGGAGCACTGTAGTACCTCATATTA 58.630 40.000 0.00 0.00 31.32 0.98
3756 6384 5.208890 TGGAGCACTGTAGTACCTCATATT 58.791 41.667 0.00 0.00 31.32 1.28
3757 6385 4.804597 TGGAGCACTGTAGTACCTCATAT 58.195 43.478 0.00 0.00 31.32 1.78
3758 6386 4.245251 TGGAGCACTGTAGTACCTCATA 57.755 45.455 0.00 1.72 31.32 2.15
3759 6387 3.101643 TGGAGCACTGTAGTACCTCAT 57.898 47.619 0.00 0.00 31.32 2.90
3760 6388 2.561419 GTTGGAGCACTGTAGTACCTCA 59.439 50.000 0.00 0.00 31.32 3.86
3761 6389 2.094130 GGTTGGAGCACTGTAGTACCTC 60.094 54.545 0.00 0.00 0.00 3.85
3762 6390 1.900486 GGTTGGAGCACTGTAGTACCT 59.100 52.381 0.00 0.00 0.00 3.08
3763 6391 1.621814 TGGTTGGAGCACTGTAGTACC 59.378 52.381 0.00 0.00 0.00 3.34
3764 6392 3.611766 ATGGTTGGAGCACTGTAGTAC 57.388 47.619 0.00 0.00 0.00 2.73
3765 6393 4.159693 CACTATGGTTGGAGCACTGTAGTA 59.840 45.833 0.00 0.00 0.00 1.82
3766 6394 3.055819 CACTATGGTTGGAGCACTGTAGT 60.056 47.826 0.00 0.00 0.00 2.73
3767 6395 3.525537 CACTATGGTTGGAGCACTGTAG 58.474 50.000 0.00 0.00 0.00 2.74
3768 6396 2.354704 GCACTATGGTTGGAGCACTGTA 60.355 50.000 0.00 0.00 0.00 2.74
3769 6397 1.611673 GCACTATGGTTGGAGCACTGT 60.612 52.381 0.00 0.00 0.00 3.55
3770 6398 1.089920 GCACTATGGTTGGAGCACTG 58.910 55.000 0.00 0.00 0.00 3.66
3771 6399 0.391661 CGCACTATGGTTGGAGCACT 60.392 55.000 0.00 0.00 0.00 4.40
3772 6400 1.369091 CCGCACTATGGTTGGAGCAC 61.369 60.000 0.00 0.00 0.00 4.40
3773 6401 1.078497 CCGCACTATGGTTGGAGCA 60.078 57.895 0.00 0.00 0.00 4.26
3774 6402 0.177141 TACCGCACTATGGTTGGAGC 59.823 55.000 4.45 0.00 40.96 4.70
3775 6403 1.472728 GGTACCGCACTATGGTTGGAG 60.473 57.143 0.00 0.00 40.96 3.86
3776 6404 0.538118 GGTACCGCACTATGGTTGGA 59.462 55.000 0.00 0.00 40.96 3.53
3777 6405 0.539986 AGGTACCGCACTATGGTTGG 59.460 55.000 6.18 0.00 40.96 3.77
3778 6406 2.429610 ACTAGGTACCGCACTATGGTTG 59.570 50.000 6.18 0.00 40.96 3.77
3779 6407 2.429610 CACTAGGTACCGCACTATGGTT 59.570 50.000 6.18 0.00 40.96 3.67
3780 6408 2.029623 CACTAGGTACCGCACTATGGT 58.970 52.381 6.18 0.00 43.62 3.55
3781 6409 1.340248 CCACTAGGTACCGCACTATGG 59.660 57.143 6.18 6.29 0.00 2.74
3782 6410 2.795175 CCACTAGGTACCGCACTATG 57.205 55.000 6.18 0.71 0.00 2.23
3794 6422 6.978674 TTATCTATTGAGGACACCACTAGG 57.021 41.667 0.00 0.00 42.21 3.02
3795 6423 8.478877 ACTTTTATCTATTGAGGACACCACTAG 58.521 37.037 0.00 0.00 0.00 2.57
3796 6424 8.258007 CACTTTTATCTATTGAGGACACCACTA 58.742 37.037 0.00 0.00 0.00 2.74
3797 6425 7.106239 CACTTTTATCTATTGAGGACACCACT 58.894 38.462 0.00 0.00 0.00 4.00
3798 6426 6.879458 ACACTTTTATCTATTGAGGACACCAC 59.121 38.462 0.00 0.00 0.00 4.16
3799 6427 6.878923 CACACTTTTATCTATTGAGGACACCA 59.121 38.462 0.00 0.00 0.00 4.17
3800 6428 6.183360 GCACACTTTTATCTATTGAGGACACC 60.183 42.308 0.00 0.00 0.00 4.16
3801 6429 6.183360 GGCACACTTTTATCTATTGAGGACAC 60.183 42.308 0.00 0.00 0.00 3.67
3802 6430 5.880332 GGCACACTTTTATCTATTGAGGACA 59.120 40.000 0.00 0.00 0.00 4.02
3803 6431 6.116126 AGGCACACTTTTATCTATTGAGGAC 58.884 40.000 0.00 0.00 0.00 3.85
3804 6432 6.313519 AGGCACACTTTTATCTATTGAGGA 57.686 37.500 0.00 0.00 0.00 3.71
3805 6433 5.529060 GGAGGCACACTTTTATCTATTGAGG 59.471 44.000 0.00 0.00 0.00 3.86
3806 6434 6.352516 AGGAGGCACACTTTTATCTATTGAG 58.647 40.000 0.00 0.00 0.00 3.02
3807 6435 6.313519 AGGAGGCACACTTTTATCTATTGA 57.686 37.500 0.00 0.00 0.00 2.57
3808 6436 6.599244 TCAAGGAGGCACACTTTTATCTATTG 59.401 38.462 0.00 0.00 0.00 1.90
3809 6437 6.599638 GTCAAGGAGGCACACTTTTATCTATT 59.400 38.462 0.00 0.00 0.00 1.73
3810 6438 6.116126 GTCAAGGAGGCACACTTTTATCTAT 58.884 40.000 0.00 0.00 0.00 1.98
3811 6439 5.488341 GTCAAGGAGGCACACTTTTATCTA 58.512 41.667 0.00 0.00 0.00 1.98
3812 6440 4.327680 GTCAAGGAGGCACACTTTTATCT 58.672 43.478 0.00 0.00 0.00 1.98
3813 6441 3.125316 CGTCAAGGAGGCACACTTTTATC 59.875 47.826 0.00 0.00 0.00 1.75
3814 6442 3.074412 CGTCAAGGAGGCACACTTTTAT 58.926 45.455 0.00 0.00 0.00 1.40
3815 6443 2.103432 TCGTCAAGGAGGCACACTTTTA 59.897 45.455 0.00 0.00 0.00 1.52
3816 6444 1.134220 TCGTCAAGGAGGCACACTTTT 60.134 47.619 0.00 0.00 0.00 2.27
3817 6445 0.468226 TCGTCAAGGAGGCACACTTT 59.532 50.000 0.00 0.00 0.00 2.66
3818 6446 0.034059 CTCGTCAAGGAGGCACACTT 59.966 55.000 0.00 0.00 0.00 3.16
3819 6447 0.827925 TCTCGTCAAGGAGGCACACT 60.828 55.000 0.31 0.00 34.74 3.55
3820 6448 0.033504 TTCTCGTCAAGGAGGCACAC 59.966 55.000 0.31 0.00 34.74 3.82
3821 6449 0.756294 TTTCTCGTCAAGGAGGCACA 59.244 50.000 0.31 0.00 34.74 4.57
3822 6450 1.433534 CTTTCTCGTCAAGGAGGCAC 58.566 55.000 0.31 0.00 34.74 5.01
3823 6451 0.320771 GCTTTCTCGTCAAGGAGGCA 60.321 55.000 0.31 0.00 34.74 4.75
3824 6452 0.036858 AGCTTTCTCGTCAAGGAGGC 60.037 55.000 0.31 0.00 34.74 4.70
3825 6453 2.072298 CAAGCTTTCTCGTCAAGGAGG 58.928 52.381 0.00 0.00 34.74 4.30
3826 6454 2.734079 GACAAGCTTTCTCGTCAAGGAG 59.266 50.000 9.20 0.00 35.32 3.69
3827 6455 2.102420 TGACAAGCTTTCTCGTCAAGGA 59.898 45.455 13.31 0.00 35.54 3.36
3828 6456 2.221981 GTGACAAGCTTTCTCGTCAAGG 59.778 50.000 16.37 0.00 39.90 3.61
3829 6457 3.126831 AGTGACAAGCTTTCTCGTCAAG 58.873 45.455 16.37 0.00 39.90 3.02
3830 6458 3.179443 AGTGACAAGCTTTCTCGTCAA 57.821 42.857 16.37 2.14 39.90 3.18
3831 6459 2.890808 AGTGACAAGCTTTCTCGTCA 57.109 45.000 12.03 12.03 36.09 4.35
3832 6460 4.149046 CAGTTAGTGACAAGCTTTCTCGTC 59.851 45.833 0.00 1.49 0.00 4.20
3833 6461 4.051922 CAGTTAGTGACAAGCTTTCTCGT 58.948 43.478 0.00 0.00 0.00 4.18
3834 6462 4.299155 TCAGTTAGTGACAAGCTTTCTCG 58.701 43.478 0.00 0.00 0.00 4.04
3846 6474 4.077108 ACGTCACCTATGTCAGTTAGTGA 58.923 43.478 0.00 0.00 0.00 3.41
3847 6475 4.436242 ACGTCACCTATGTCAGTTAGTG 57.564 45.455 0.00 0.00 0.00 2.74
3848 6476 6.120905 AGATACGTCACCTATGTCAGTTAGT 58.879 40.000 0.00 0.00 0.00 2.24
3849 6477 6.621316 AGATACGTCACCTATGTCAGTTAG 57.379 41.667 0.00 0.00 0.00 2.34
3850 6478 6.204301 GCTAGATACGTCACCTATGTCAGTTA 59.796 42.308 0.00 0.00 0.00 2.24
3851 6479 5.008811 GCTAGATACGTCACCTATGTCAGTT 59.991 44.000 0.00 0.00 0.00 3.16
3852 6480 4.515944 GCTAGATACGTCACCTATGTCAGT 59.484 45.833 0.00 0.00 0.00 3.41
3853 6481 4.757657 AGCTAGATACGTCACCTATGTCAG 59.242 45.833 0.00 0.00 0.00 3.51
3854 6482 4.715713 AGCTAGATACGTCACCTATGTCA 58.284 43.478 0.00 0.00 0.00 3.58
3855 6483 5.692613 AAGCTAGATACGTCACCTATGTC 57.307 43.478 0.00 0.00 0.00 3.06
3856 6484 6.060136 TGTAAGCTAGATACGTCACCTATGT 58.940 40.000 0.00 0.00 0.00 2.29
3857 6485 6.205076 ACTGTAAGCTAGATACGTCACCTATG 59.795 42.308 0.00 0.00 37.60 2.23
3858 6486 6.297582 ACTGTAAGCTAGATACGTCACCTAT 58.702 40.000 0.00 0.00 37.60 2.57
3859 6487 5.678583 ACTGTAAGCTAGATACGTCACCTA 58.321 41.667 0.00 0.00 37.60 3.08
3860 6488 4.525024 ACTGTAAGCTAGATACGTCACCT 58.475 43.478 0.00 0.00 37.60 4.00
3861 6489 4.897025 ACTGTAAGCTAGATACGTCACC 57.103 45.455 0.00 0.00 37.60 4.02
3862 6490 6.957150 ACATACTGTAAGCTAGATACGTCAC 58.043 40.000 0.00 0.00 37.60 3.67
3863 6491 6.764560 TGACATACTGTAAGCTAGATACGTCA 59.235 38.462 0.00 2.49 37.60 4.35
3864 6492 7.187244 TGACATACTGTAAGCTAGATACGTC 57.813 40.000 0.00 0.04 37.60 4.34
3865 6493 7.747155 ATGACATACTGTAAGCTAGATACGT 57.253 36.000 0.00 0.00 37.60 3.57
3866 6494 8.176365 GGTATGACATACTGTAAGCTAGATACG 58.824 40.741 21.88 0.00 37.60 3.06
3867 6495 9.233649 AGGTATGACATACTGTAAGCTAGATAC 57.766 37.037 21.88 3.76 37.60 2.24
3868 6496 9.232473 CAGGTATGACATACTGTAAGCTAGATA 57.768 37.037 21.88 0.00 37.60 1.98
3869 6497 7.309499 GCAGGTATGACATACTGTAAGCTAGAT 60.309 40.741 21.88 0.00 37.60 1.98
3870 6498 6.016192 GCAGGTATGACATACTGTAAGCTAGA 60.016 42.308 21.88 0.00 37.60 2.43
3871 6499 6.015856 AGCAGGTATGACATACTGTAAGCTAG 60.016 42.308 21.88 8.19 37.60 3.42
3872 6500 5.833667 AGCAGGTATGACATACTGTAAGCTA 59.166 40.000 21.88 0.00 37.60 3.32
3873 6501 4.651503 AGCAGGTATGACATACTGTAAGCT 59.348 41.667 21.88 19.03 37.60 3.74
3874 6502 4.950050 AGCAGGTATGACATACTGTAAGC 58.050 43.478 21.88 17.57 37.60 3.09
3875 6503 7.167635 CGTAAAGCAGGTATGACATACTGTAAG 59.832 40.741 21.88 10.65 42.29 2.34
3876 6504 6.976349 CGTAAAGCAGGTATGACATACTGTAA 59.024 38.462 21.88 3.02 36.04 2.41
3877 6505 6.319405 TCGTAAAGCAGGTATGACATACTGTA 59.681 38.462 21.88 2.71 36.04 2.74
3878 6506 5.126545 TCGTAAAGCAGGTATGACATACTGT 59.873 40.000 21.88 9.64 36.04 3.55
3879 6507 5.588240 TCGTAAAGCAGGTATGACATACTG 58.412 41.667 21.88 18.11 36.04 2.74
3880 6508 5.847111 TCGTAAAGCAGGTATGACATACT 57.153 39.130 21.88 8.24 36.04 2.12
3881 6509 6.512177 CTTCGTAAAGCAGGTATGACATAC 57.488 41.667 15.98 15.98 35.00 2.39
3895 6523 5.530519 TGTAGCTGATTTGCTTCGTAAAG 57.469 39.130 0.00 0.00 43.74 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.