Multiple sequence alignment - TraesCS3B01G256100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G256100 chr3B 100.000 6968 0 0 1 6968 413801439 413808406 0.000000e+00 12868.0
1 TraesCS3B01G256100 chr3B 94.699 962 43 5 3746 4704 378140367 378141323 0.000000e+00 1487.0
2 TraesCS3B01G256100 chr3B 93.904 689 34 3 5218 5906 378141419 378142099 0.000000e+00 1033.0
3 TraesCS3B01G256100 chr3B 87.731 864 60 14 6149 6966 706775949 706776812 0.000000e+00 966.0
4 TraesCS3B01G256100 chr3B 83.333 846 93 19 6149 6968 161645942 161645119 0.000000e+00 737.0
5 TraesCS3B01G256100 chr3B 85.432 659 61 12 6149 6781 460111149 460110500 0.000000e+00 652.0
6 TraesCS3B01G256100 chr3B 95.600 250 8 2 3495 3741 378139427 378139676 1.410000e-106 398.0
7 TraesCS3B01G256100 chr3B 93.388 242 16 0 3199 3440 378138896 378139137 6.650000e-95 359.0
8 TraesCS3B01G256100 chr3B 92.982 57 4 0 4709 4765 378141364 378141420 4.480000e-12 84.2
9 TraesCS3B01G256100 chr3A 98.110 2593 48 1 849 3440 427213398 427210806 0.000000e+00 4516.0
10 TraesCS3B01G256100 chr3A 96.802 1032 24 4 3741 4765 427209575 427208546 0.000000e+00 1714.0
11 TraesCS3B01G256100 chr3A 94.172 978 41 7 3741 4707 373328791 373327819 0.000000e+00 1476.0
12 TraesCS3B01G256100 chr3A 96.424 811 24 3 5218 6026 427208547 427207740 0.000000e+00 1332.0
13 TraesCS3B01G256100 chr3A 91.919 693 33 7 5218 5906 373327726 373327053 0.000000e+00 948.0
14 TraesCS3B01G256100 chr3A 94.961 258 13 0 3487 3744 427210516 427210259 8.420000e-109 405.0
15 TraesCS3B01G256100 chr3A 95.618 251 10 1 3495 3744 373329725 373329475 1.090000e-107 401.0
16 TraesCS3B01G256100 chr3A 94.628 242 13 0 3199 3440 373330255 373330014 6.600000e-100 375.0
17 TraesCS3B01G256100 chr3A 75.635 591 112 20 6398 6961 643211299 643211884 1.490000e-66 265.0
18 TraesCS3B01G256100 chr3A 98.649 74 1 0 6036 6109 721932841 721932768 1.580000e-26 132.0
19 TraesCS3B01G256100 chr3A 96.053 76 3 0 6034 6109 256881594 256881669 2.640000e-24 124.0
20 TraesCS3B01G256100 chr3A 98.246 57 1 0 4709 4765 373327781 373327725 4.450000e-17 100.0
21 TraesCS3B01G256100 chr3D 97.974 2567 50 2 876 3440 307941425 307938859 0.000000e+00 4451.0
22 TraesCS3B01G256100 chr3D 96.488 1025 19 1 3741 4765 307937691 307936684 0.000000e+00 1677.0
23 TraesCS3B01G256100 chr3D 94.639 970 43 6 3741 4707 285113819 285112856 0.000000e+00 1495.0
24 TraesCS3B01G256100 chr3D 95.203 813 23 5 5218 6028 307936685 307935887 0.000000e+00 1271.0
25 TraesCS3B01G256100 chr3D 94.485 689 35 1 5218 5906 285112763 285112078 0.000000e+00 1059.0
26 TraesCS3B01G256100 chr3D 84.579 856 84 22 6157 6968 15025589 15024738 0.000000e+00 806.0
27 TraesCS3B01G256100 chr3D 82.353 850 98 24 6152 6968 160623879 160624709 0.000000e+00 691.0
28 TraesCS3B01G256100 chr3D 78.814 708 99 35 4 695 131575324 131575996 4.990000e-116 429.0
29 TraesCS3B01G256100 chr3D 96.471 255 9 0 3490 3744 307938613 307938359 8.360000e-114 422.0
30 TraesCS3B01G256100 chr3D 95.652 253 8 2 3495 3744 285114755 285114503 3.030000e-108 403.0
31 TraesCS3B01G256100 chr3D 77.433 709 108 36 5 695 566614352 566613678 6.600000e-100 375.0
32 TraesCS3B01G256100 chr3D 93.802 242 15 0 3199 3440 285115286 285115045 1.430000e-96 364.0
33 TraesCS3B01G256100 chr3D 97.297 74 2 0 5146 5219 588394812 588394885 7.340000e-25 126.0
34 TraesCS3B01G256100 chr3D 92.857 84 4 2 5147 5230 532240079 532239998 3.410000e-23 121.0
35 TraesCS3B01G256100 chr3D 94.737 76 4 0 6034 6109 19025163 19025238 1.230000e-22 119.0
36 TraesCS3B01G256100 chr3D 98.246 57 1 0 4709 4765 285112818 285112762 4.450000e-17 100.0
37 TraesCS3B01G256100 chr7D 91.338 2205 178 5 992 3194 330439314 330437121 0.000000e+00 3001.0
38 TraesCS3B01G256100 chr7D 82.917 720 90 14 4 693 114472511 114471795 9.930000e-173 617.0
39 TraesCS3B01G256100 chr7D 80.672 714 86 23 4 693 19580804 19581489 2.240000e-139 507.0
40 TraesCS3B01G256100 chr7D 79.694 719 94 21 1 695 230429019 230429709 8.180000e-129 472.0
41 TraesCS3B01G256100 chr7D 82.913 515 57 14 8 509 482241466 482240970 1.070000e-117 435.0
42 TraesCS3B01G256100 chr7D 95.333 150 7 0 4830 4979 13396581 13396730 9.030000e-59 239.0
43 TraesCS3B01G256100 chr7D 75.161 467 65 21 263 696 563345356 563344908 9.290000e-39 172.0
44 TraesCS3B01G256100 chr5B 88.561 813 49 7 6149 6917 454691775 454692587 0.000000e+00 946.0
45 TraesCS3B01G256100 chr5B 86.423 847 83 15 6149 6968 296044254 296043413 0.000000e+00 898.0
46 TraesCS3B01G256100 chr5B 83.306 599 62 19 8 572 158785554 158786148 1.040000e-142 518.0
47 TraesCS3B01G256100 chr5B 97.143 175 4 1 4980 5154 321975101 321974928 1.900000e-75 294.0
48 TraesCS3B01G256100 chr5B 81.538 260 40 4 441 699 679142805 679142553 2.550000e-49 207.0
49 TraesCS3B01G256100 chr5B 89.474 95 5 5 5147 5238 472674339 472674247 1.590000e-21 115.0
50 TraesCS3B01G256100 chr5B 92.500 80 3 3 5146 5223 633667166 633667244 2.050000e-20 111.0
51 TraesCS3B01G256100 chr5B 95.000 60 3 0 4752 4811 227646956 227646897 2.070000e-15 95.3
52 TraesCS3B01G256100 chr5B 90.909 66 5 1 4746 4811 218740204 218740268 3.460000e-13 87.9
53 TraesCS3B01G256100 chr7B 87.397 849 74 15 6149 6968 692392025 692392869 0.000000e+00 944.0
54 TraesCS3B01G256100 chr7B 75.655 916 161 44 3857 4743 489136910 489136028 3.920000e-107 399.0
55 TraesCS3B01G256100 chr7B 98.810 168 2 0 4980 5147 536117755 536117588 4.090000e-77 300.0
56 TraesCS3B01G256100 chr7B 98.246 171 2 1 4980 5150 198551233 198551064 1.470000e-76 298.0
57 TraesCS3B01G256100 chr7B 97.674 172 2 2 4980 5151 699827916 699828085 1.900000e-75 294.0
58 TraesCS3B01G256100 chr7B 92.683 82 5 1 5147 5228 51623605 51623685 4.420000e-22 117.0
59 TraesCS3B01G256100 chr7B 92.424 66 4 1 4746 4811 170131181 170131245 7.440000e-15 93.5
60 TraesCS3B01G256100 chr7B 90.909 66 5 1 4746 4811 37634976 37634912 3.460000e-13 87.9
61 TraesCS3B01G256100 chr4A 85.579 846 84 20 6149 6961 712565227 712564387 0.000000e+00 852.0
62 TraesCS3B01G256100 chr4A 75.276 724 98 53 5 696 580293572 580294246 3.200000e-68 270.0
63 TraesCS3B01G256100 chr4A 97.368 152 4 0 4828 4979 46564153 46564002 6.930000e-65 259.0
64 TraesCS3B01G256100 chr4A 96.178 157 6 0 4827 4983 570970373 570970529 2.490000e-64 257.0
65 TraesCS3B01G256100 chr4A 96.667 150 5 0 4830 4979 36282952 36282803 4.170000e-62 250.0
66 TraesCS3B01G256100 chr4A 82.609 253 33 10 445 695 150233357 150233114 5.470000e-51 213.0
67 TraesCS3B01G256100 chr4A 94.872 78 4 0 5146 5223 149644843 149644766 9.490000e-24 122.0
68 TraesCS3B01G256100 chr4A 92.000 75 6 0 6035 6109 27673653 27673579 9.560000e-19 106.0
69 TraesCS3B01G256100 chr1B 84.785 861 88 15 6149 6968 623455591 623456449 0.000000e+00 824.0
70 TraesCS3B01G256100 chr1B 78.588 864 128 28 6149 6961 191000662 190999805 1.040000e-142 518.0
71 TraesCS3B01G256100 chr1B 80.054 737 96 28 1 697 573139665 573140390 3.750000e-137 499.0
72 TraesCS3B01G256100 chr1B 82.625 259 36 8 439 695 45804041 45804292 3.270000e-53 220.0
73 TraesCS3B01G256100 chr1B 97.297 74 2 0 5147 5220 502107206 502107133 7.340000e-25 126.0
74 TraesCS3B01G256100 chr1B 91.954 87 6 1 5146 5231 642926773 642926687 3.410000e-23 121.0
75 TraesCS3B01G256100 chr6D 83.641 868 89 22 6149 6968 397036386 397035524 0.000000e+00 767.0
76 TraesCS3B01G256100 chr6D 77.259 686 101 37 5 647 435077602 435078275 1.110000e-92 351.0
77 TraesCS3B01G256100 chr5D 83.333 852 97 26 6150 6959 382293122 382293970 0.000000e+00 745.0
78 TraesCS3B01G256100 chr5D 90.698 86 5 3 5147 5231 480344222 480344305 2.050000e-20 111.0
79 TraesCS3B01G256100 chr6B 86.869 693 51 10 6316 6968 663708217 663707525 0.000000e+00 739.0
80 TraesCS3B01G256100 chr6B 97.368 152 4 0 4828 4979 40203353 40203202 6.930000e-65 259.0
81 TraesCS3B01G256100 chr6B 96.154 156 6 0 4830 4985 720829364 720829209 8.970000e-64 255.0
82 TraesCS3B01G256100 chr6B 73.288 730 122 54 5 693 585261766 585262463 4.260000e-47 200.0
83 TraesCS3B01G256100 chr6B 81.633 147 25 2 693 837 533520536 533520390 3.410000e-23 121.0
84 TraesCS3B01G256100 chr7A 82.887 859 81 35 6175 6968 708291965 708291108 0.000000e+00 712.0
85 TraesCS3B01G256100 chr7A 98.235 170 2 1 4980 5149 438151637 438151469 5.280000e-76 296.0
86 TraesCS3B01G256100 chr7A 95.302 149 7 0 4830 4978 704255223 704255075 3.250000e-58 237.0
87 TraesCS3B01G256100 chr7A 94.595 148 8 0 4831 4978 704233932 704233785 5.440000e-56 230.0
88 TraesCS3B01G256100 chr7A 79.094 287 51 8 4459 4743 535920365 535920644 9.230000e-44 189.0
89 TraesCS3B01G256100 chr7A 88.435 147 16 1 4828 4973 268186241 268186387 7.180000e-40 176.0
90 TraesCS3B01G256100 chr7A 89.610 77 8 0 6033 6109 731691304 731691228 1.600000e-16 99.0
91 TraesCS3B01G256100 chr7A 87.209 86 10 1 6033 6118 40989177 40989261 5.750000e-16 97.1
92 TraesCS3B01G256100 chrUn 84.189 721 69 17 6289 6968 33169837 33170553 0.000000e+00 658.0
93 TraesCS3B01G256100 chrUn 77.740 593 96 24 6398 6961 41350616 41351201 1.450000e-86 331.0
94 TraesCS3B01G256100 chr6A 82.328 713 95 14 8 699 487210696 487211398 2.160000e-164 590.0
95 TraesCS3B01G256100 chr2D 81.538 715 91 18 8 697 492298583 492297885 1.020000e-152 551.0
96 TraesCS3B01G256100 chr2D 85.377 212 26 4 6759 6968 47399772 47399980 1.520000e-51 215.0
97 TraesCS3B01G256100 chr2D 89.610 77 8 0 6033 6109 588545383 588545307 1.600000e-16 99.0
98 TraesCS3B01G256100 chr2A 80.893 717 93 26 8 693 17755681 17754978 6.190000e-145 525.0
99 TraesCS3B01G256100 chr2A 98.266 173 1 2 4973 5144 351551781 351551952 1.140000e-77 302.0
100 TraesCS3B01G256100 chr2A 90.909 66 4 2 4746 4811 610813958 610813895 3.460000e-13 87.9
101 TraesCS3B01G256100 chr2B 83.186 565 58 18 6149 6681 14312378 14312937 3.780000e-132 483.0
102 TraesCS3B01G256100 chr2B 97.260 73 2 0 5147 5219 699040824 699040896 2.640000e-24 124.0
103 TraesCS3B01G256100 chr2B 93.671 79 4 1 5149 5227 507642567 507642490 4.420000e-22 117.0
104 TraesCS3B01G256100 chr2B 92.593 81 5 1 5147 5227 10384140 10384219 1.590000e-21 115.0
105 TraesCS3B01G256100 chr4D 80.656 579 81 17 101 664 417432416 417431854 3.010000e-113 420.0
106 TraesCS3B01G256100 chr4D 79.310 348 31 17 269 593 502753229 502752900 9.160000e-49 206.0
107 TraesCS3B01G256100 chr1D 80.813 443 54 16 271 693 296617435 296617004 1.130000e-82 318.0
108 TraesCS3B01G256100 chr1A 99.394 165 1 0 4980 5144 82525901 82526065 4.090000e-77 300.0
109 TraesCS3B01G256100 chr1A 98.817 169 1 1 4980 5148 515551313 515551480 4.090000e-77 300.0
110 TraesCS3B01G256100 chr1A 94.872 156 8 0 4824 4979 40137364 40137519 1.940000e-60 244.0
111 TraesCS3B01G256100 chr1A 77.346 437 63 23 215 622 35950007 35949578 7.030000e-55 226.0
112 TraesCS3B01G256100 chr1A 92.405 79 4 2 5147 5224 3261646 3261723 2.050000e-20 111.0
113 TraesCS3B01G256100 chr1A 92.424 66 4 1 4746 4811 165453982 165454046 7.440000e-15 93.5
114 TraesCS3B01G256100 chr4B 98.235 170 2 1 4980 5149 128540688 128540856 5.280000e-76 296.0
115 TraesCS3B01G256100 chr4B 94.737 114 6 0 4829 4942 617626212 617626099 2.000000e-40 178.0
116 TraesCS3B01G256100 chr4B 94.737 76 4 0 5147 5222 660689441 660689366 1.230000e-22 119.0
117 TraesCS3B01G256100 chr4B 94.915 59 3 0 4753 4811 99436905 99436963 7.440000e-15 93.5
118 TraesCS3B01G256100 chr4B 90.909 66 5 1 4746 4811 371430581 371430645 3.460000e-13 87.9
119 TraesCS3B01G256100 chr5A 97.386 153 4 0 4828 4980 600053915 600053763 1.930000e-65 261.0
120 TraesCS3B01G256100 chr5A 98.701 77 1 0 6033 6109 282596627 282596551 3.390000e-28 137.0
121 TraesCS3B01G256100 chr5A 90.909 77 7 0 6033 6109 464198703 464198627 3.440000e-18 104.0
122 TraesCS3B01G256100 chr5A 83.761 117 9 7 331 438 77332108 77331993 1.240000e-17 102.0
123 TraesCS3B01G256100 chr5A 92.424 66 4 1 4746 4811 295111676 295111612 7.440000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G256100 chr3B 413801439 413808406 6967 False 12868.00 12868 100.00000 1 6968 1 chr3B.!!$F1 6967
1 TraesCS3B01G256100 chr3B 706775949 706776812 863 False 966.00 966 87.73100 6149 6966 1 chr3B.!!$F2 817
2 TraesCS3B01G256100 chr3B 161645119 161645942 823 True 737.00 737 83.33300 6149 6968 1 chr3B.!!$R1 819
3 TraesCS3B01G256100 chr3B 378138896 378142099 3203 False 672.24 1487 94.11460 3199 5906 5 chr3B.!!$F3 2707
4 TraesCS3B01G256100 chr3B 460110500 460111149 649 True 652.00 652 85.43200 6149 6781 1 chr3B.!!$R2 632
5 TraesCS3B01G256100 chr3A 427207740 427213398 5658 True 1991.75 4516 96.57425 849 6026 4 chr3A.!!$R3 5177
6 TraesCS3B01G256100 chr3A 373327053 373330255 3202 True 660.00 1476 94.91660 3199 5906 5 chr3A.!!$R2 2707
7 TraesCS3B01G256100 chr3A 643211299 643211884 585 False 265.00 265 75.63500 6398 6961 1 chr3A.!!$F2 563
8 TraesCS3B01G256100 chr3D 307935887 307941425 5538 True 1955.25 4451 96.53400 876 6028 4 chr3D.!!$R5 5152
9 TraesCS3B01G256100 chr3D 15024738 15025589 851 True 806.00 806 84.57900 6157 6968 1 chr3D.!!$R1 811
10 TraesCS3B01G256100 chr3D 160623879 160624709 830 False 691.00 691 82.35300 6152 6968 1 chr3D.!!$F3 816
11 TraesCS3B01G256100 chr3D 285112078 285115286 3208 True 684.20 1495 95.36480 3199 5906 5 chr3D.!!$R4 2707
12 TraesCS3B01G256100 chr3D 131575324 131575996 672 False 429.00 429 78.81400 4 695 1 chr3D.!!$F2 691
13 TraesCS3B01G256100 chr3D 566613678 566614352 674 True 375.00 375 77.43300 5 695 1 chr3D.!!$R3 690
14 TraesCS3B01G256100 chr7D 330437121 330439314 2193 True 3001.00 3001 91.33800 992 3194 1 chr7D.!!$R2 2202
15 TraesCS3B01G256100 chr7D 114471795 114472511 716 True 617.00 617 82.91700 4 693 1 chr7D.!!$R1 689
16 TraesCS3B01G256100 chr7D 19580804 19581489 685 False 507.00 507 80.67200 4 693 1 chr7D.!!$F2 689
17 TraesCS3B01G256100 chr7D 230429019 230429709 690 False 472.00 472 79.69400 1 695 1 chr7D.!!$F3 694
18 TraesCS3B01G256100 chr5B 454691775 454692587 812 False 946.00 946 88.56100 6149 6917 1 chr5B.!!$F3 768
19 TraesCS3B01G256100 chr5B 296043413 296044254 841 True 898.00 898 86.42300 6149 6968 1 chr5B.!!$R2 819
20 TraesCS3B01G256100 chr5B 158785554 158786148 594 False 518.00 518 83.30600 8 572 1 chr5B.!!$F1 564
21 TraesCS3B01G256100 chr7B 692392025 692392869 844 False 944.00 944 87.39700 6149 6968 1 chr7B.!!$F3 819
22 TraesCS3B01G256100 chr7B 489136028 489136910 882 True 399.00 399 75.65500 3857 4743 1 chr7B.!!$R3 886
23 TraesCS3B01G256100 chr4A 712564387 712565227 840 True 852.00 852 85.57900 6149 6961 1 chr4A.!!$R6 812
24 TraesCS3B01G256100 chr4A 580293572 580294246 674 False 270.00 270 75.27600 5 696 1 chr4A.!!$F2 691
25 TraesCS3B01G256100 chr1B 623455591 623456449 858 False 824.00 824 84.78500 6149 6968 1 chr1B.!!$F3 819
26 TraesCS3B01G256100 chr1B 190999805 191000662 857 True 518.00 518 78.58800 6149 6961 1 chr1B.!!$R1 812
27 TraesCS3B01G256100 chr1B 573139665 573140390 725 False 499.00 499 80.05400 1 697 1 chr1B.!!$F2 696
28 TraesCS3B01G256100 chr6D 397035524 397036386 862 True 767.00 767 83.64100 6149 6968 1 chr6D.!!$R1 819
29 TraesCS3B01G256100 chr6D 435077602 435078275 673 False 351.00 351 77.25900 5 647 1 chr6D.!!$F1 642
30 TraesCS3B01G256100 chr5D 382293122 382293970 848 False 745.00 745 83.33300 6150 6959 1 chr5D.!!$F1 809
31 TraesCS3B01G256100 chr6B 663707525 663708217 692 True 739.00 739 86.86900 6316 6968 1 chr6B.!!$R3 652
32 TraesCS3B01G256100 chr7A 708291108 708291965 857 True 712.00 712 82.88700 6175 6968 1 chr7A.!!$R4 793
33 TraesCS3B01G256100 chrUn 33169837 33170553 716 False 658.00 658 84.18900 6289 6968 1 chrUn.!!$F1 679
34 TraesCS3B01G256100 chrUn 41350616 41351201 585 False 331.00 331 77.74000 6398 6961 1 chrUn.!!$F2 563
35 TraesCS3B01G256100 chr6A 487210696 487211398 702 False 590.00 590 82.32800 8 699 1 chr6A.!!$F1 691
36 TraesCS3B01G256100 chr2D 492297885 492298583 698 True 551.00 551 81.53800 8 697 1 chr2D.!!$R1 689
37 TraesCS3B01G256100 chr2A 17754978 17755681 703 True 525.00 525 80.89300 8 693 1 chr2A.!!$R1 685
38 TraesCS3B01G256100 chr2B 14312378 14312937 559 False 483.00 483 83.18600 6149 6681 1 chr2B.!!$F2 532
39 TraesCS3B01G256100 chr4D 417431854 417432416 562 True 420.00 420 80.65600 101 664 1 chr4D.!!$R1 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 230 0.101759 GGTAGCGCTCGACCATTGTA 59.898 55.000 21.90 0.00 37.83 2.41 F
304 407 0.107800 GAGGGAGGGACGGCTTTTAC 60.108 60.000 0.00 0.00 0.00 2.01 F
1323 1519 0.108138 CACTCCGGCTACTTTCCCTG 60.108 60.000 0.00 0.00 0.00 4.45 F
1773 1969 1.337071 CAGATGTTGCATCATGGCCTC 59.663 52.381 14.89 1.41 0.00 4.70 F
2667 2864 1.466851 AAGGCCTTTGCAAGCAGTCC 61.467 55.000 13.78 1.75 40.13 3.85 F
3543 3984 2.716217 AGCCAAGACCTGCTAATCAAC 58.284 47.619 0.00 0.00 35.69 3.18 F
4887 6091 0.038159 AGCCGACACAAGCTCTACAC 60.038 55.000 0.00 0.00 32.71 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1341 1537 0.468400 AGGATAGGGACGGCAGAGTC 60.468 60.000 0.00 0.00 40.25 3.36 R
1654 1850 1.576421 GCAACACAGCCCTCTTTCG 59.424 57.895 0.00 0.00 0.00 3.46 R
2518 2715 1.665679 GATCGCATTGTACACCTGTGG 59.334 52.381 14.82 5.42 34.19 4.17 R
3770 4905 1.761784 TCTTGGTGCCTGCAAAACATT 59.238 42.857 0.00 0.00 0.00 2.71 R
3824 4959 0.319405 GCCAAGGCATTTGCTTGAGT 59.681 50.000 6.14 0.00 41.70 3.41 R
4926 6130 0.032912 TACTCAGCCGGTGTATCCCA 60.033 55.000 1.90 0.00 0.00 4.37 R
6051 7261 0.040246 GATACCGAGCTACCTGACGC 60.040 60.000 0.00 0.00 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 230 0.101759 GGTAGCGCTCGACCATTGTA 59.898 55.000 21.90 0.00 37.83 2.41
183 241 3.065575 GACCATTGTAGTCGGCAGG 57.934 57.895 0.00 0.00 0.00 4.85
251 320 2.041265 GGCAGGAGAGGGGGAGAA 59.959 66.667 0.00 0.00 0.00 2.87
261 347 0.193574 AGGGGGAGAAGGTTCTGTGA 59.806 55.000 0.00 0.00 37.73 3.58
262 348 1.064825 GGGGGAGAAGGTTCTGTGAA 58.935 55.000 0.00 0.00 37.73 3.18
267 353 2.635427 GGAGAAGGTTCTGTGAAGAGGT 59.365 50.000 0.00 0.00 37.73 3.85
304 407 0.107800 GAGGGAGGGACGGCTTTTAC 60.108 60.000 0.00 0.00 0.00 2.01
307 410 0.323957 GGAGGGACGGCTTTTACAGT 59.676 55.000 0.00 0.00 0.00 3.55
313 416 2.908817 CGGCTTTTACAGTCGTGGT 58.091 52.632 0.00 0.00 46.18 4.16
562 743 4.660938 GTTTGGCCTGGGTCCGCT 62.661 66.667 3.32 0.00 0.00 5.52
574 756 1.579429 GTCCGCTGTCGCCAAATTT 59.421 52.632 0.00 0.00 0.00 1.82
615 799 2.656069 GCTTCTGGGGGTGCGACTA 61.656 63.158 0.00 0.00 0.00 2.59
629 813 1.636988 CGACTAGGCCGATTTTTCGT 58.363 50.000 0.00 0.00 0.00 3.85
710 905 4.377839 CTCTTAGGAGCTCGAATGTCAA 57.622 45.455 7.83 0.00 32.43 3.18
711 906 4.358851 CTCTTAGGAGCTCGAATGTCAAG 58.641 47.826 7.83 3.38 32.43 3.02
712 907 4.017126 TCTTAGGAGCTCGAATGTCAAGA 58.983 43.478 7.83 5.56 0.00 3.02
713 908 2.663826 AGGAGCTCGAATGTCAAGAC 57.336 50.000 7.83 0.00 0.00 3.01
714 909 2.175202 AGGAGCTCGAATGTCAAGACT 58.825 47.619 7.83 0.00 0.00 3.24
715 910 2.165437 AGGAGCTCGAATGTCAAGACTC 59.835 50.000 7.83 0.00 0.00 3.36
716 911 2.094494 GGAGCTCGAATGTCAAGACTCA 60.094 50.000 7.83 0.00 0.00 3.41
717 912 2.920490 GAGCTCGAATGTCAAGACTCAC 59.080 50.000 0.00 0.00 0.00 3.51
718 913 2.297315 AGCTCGAATGTCAAGACTCACA 59.703 45.455 1.53 0.00 0.00 3.58
719 914 3.059884 GCTCGAATGTCAAGACTCACAA 58.940 45.455 1.53 0.00 0.00 3.33
720 915 3.494626 GCTCGAATGTCAAGACTCACAAA 59.505 43.478 1.53 0.00 0.00 2.83
721 916 4.609336 GCTCGAATGTCAAGACTCACAAAC 60.609 45.833 1.53 0.00 0.00 2.93
722 917 4.693283 TCGAATGTCAAGACTCACAAACT 58.307 39.130 1.53 0.00 0.00 2.66
723 918 4.745125 TCGAATGTCAAGACTCACAAACTC 59.255 41.667 1.53 0.00 0.00 3.01
724 919 4.375405 CGAATGTCAAGACTCACAAACTCG 60.375 45.833 1.53 0.00 0.00 4.18
725 920 2.201732 TGTCAAGACTCACAAACTCGC 58.798 47.619 1.53 0.00 0.00 5.03
726 921 2.201732 GTCAAGACTCACAAACTCGCA 58.798 47.619 0.00 0.00 0.00 5.10
727 922 2.607635 GTCAAGACTCACAAACTCGCAA 59.392 45.455 0.00 0.00 0.00 4.85
728 923 3.063452 GTCAAGACTCACAAACTCGCAAA 59.937 43.478 0.00 0.00 0.00 3.68
729 924 3.309682 TCAAGACTCACAAACTCGCAAAG 59.690 43.478 0.00 0.00 0.00 2.77
730 925 1.599542 AGACTCACAAACTCGCAAAGC 59.400 47.619 0.00 0.00 0.00 3.51
731 926 1.330521 GACTCACAAACTCGCAAAGCA 59.669 47.619 0.00 0.00 0.00 3.91
732 927 1.064060 ACTCACAAACTCGCAAAGCAC 59.936 47.619 0.00 0.00 0.00 4.40
733 928 1.063912 CTCACAAACTCGCAAAGCACA 59.936 47.619 0.00 0.00 0.00 4.57
734 929 1.191096 CACAAACTCGCAAAGCACAC 58.809 50.000 0.00 0.00 0.00 3.82
735 930 0.808125 ACAAACTCGCAAAGCACACA 59.192 45.000 0.00 0.00 0.00 3.72
736 931 1.405105 ACAAACTCGCAAAGCACACAT 59.595 42.857 0.00 0.00 0.00 3.21
737 932 2.159254 ACAAACTCGCAAAGCACACATT 60.159 40.909 0.00 0.00 0.00 2.71
738 933 3.066064 ACAAACTCGCAAAGCACACATTA 59.934 39.130 0.00 0.00 0.00 1.90
739 934 4.229096 CAAACTCGCAAAGCACACATTAT 58.771 39.130 0.00 0.00 0.00 1.28
740 935 3.747099 ACTCGCAAAGCACACATTATC 57.253 42.857 0.00 0.00 0.00 1.75
741 936 2.420022 ACTCGCAAAGCACACATTATCC 59.580 45.455 0.00 0.00 0.00 2.59
742 937 1.742831 TCGCAAAGCACACATTATCCC 59.257 47.619 0.00 0.00 0.00 3.85
743 938 1.745087 CGCAAAGCACACATTATCCCT 59.255 47.619 0.00 0.00 0.00 4.20
744 939 2.942376 CGCAAAGCACACATTATCCCTA 59.058 45.455 0.00 0.00 0.00 3.53
745 940 3.002656 CGCAAAGCACACATTATCCCTAG 59.997 47.826 0.00 0.00 0.00 3.02
746 941 3.947834 GCAAAGCACACATTATCCCTAGT 59.052 43.478 0.00 0.00 0.00 2.57
747 942 4.201950 GCAAAGCACACATTATCCCTAGTG 60.202 45.833 0.00 0.00 37.95 2.74
748 943 3.845781 AGCACACATTATCCCTAGTGG 57.154 47.619 0.00 0.00 36.35 4.00
749 944 2.158755 AGCACACATTATCCCTAGTGGC 60.159 50.000 0.00 0.00 36.35 5.01
750 945 2.158755 GCACACATTATCCCTAGTGGCT 60.159 50.000 0.00 0.00 36.35 4.75
751 946 3.470709 CACACATTATCCCTAGTGGCTG 58.529 50.000 0.00 0.00 36.35 4.85
752 947 3.115390 ACACATTATCCCTAGTGGCTGT 58.885 45.455 0.00 0.00 36.35 4.40
753 948 3.134804 ACACATTATCCCTAGTGGCTGTC 59.865 47.826 0.00 0.00 36.35 3.51
754 949 2.706190 ACATTATCCCTAGTGGCTGTCC 59.294 50.000 0.00 0.00 0.00 4.02
755 950 1.410004 TTATCCCTAGTGGCTGTCCG 58.590 55.000 0.00 0.00 34.14 4.79
756 951 0.260816 TATCCCTAGTGGCTGTCCGT 59.739 55.000 0.00 0.00 34.14 4.69
757 952 1.043673 ATCCCTAGTGGCTGTCCGTC 61.044 60.000 0.00 0.00 34.14 4.79
758 953 1.982395 CCCTAGTGGCTGTCCGTCA 60.982 63.158 0.00 0.00 34.14 4.35
759 954 1.330655 CCCTAGTGGCTGTCCGTCAT 61.331 60.000 0.00 0.00 34.14 3.06
760 955 0.179100 CCTAGTGGCTGTCCGTCATG 60.179 60.000 0.00 0.00 34.14 3.07
761 956 0.532573 CTAGTGGCTGTCCGTCATGT 59.467 55.000 0.00 0.00 34.14 3.21
762 957 0.973632 TAGTGGCTGTCCGTCATGTT 59.026 50.000 0.00 0.00 34.14 2.71
763 958 0.108585 AGTGGCTGTCCGTCATGTTT 59.891 50.000 0.00 0.00 34.14 2.83
764 959 0.238289 GTGGCTGTCCGTCATGTTTG 59.762 55.000 0.00 0.00 34.14 2.93
765 960 0.888736 TGGCTGTCCGTCATGTTTGG 60.889 55.000 0.00 0.00 34.14 3.28
766 961 0.889186 GGCTGTCCGTCATGTTTGGT 60.889 55.000 0.00 0.00 0.00 3.67
767 962 0.951558 GCTGTCCGTCATGTTTGGTT 59.048 50.000 0.00 0.00 0.00 3.67
768 963 2.147958 GCTGTCCGTCATGTTTGGTTA 58.852 47.619 0.00 0.00 0.00 2.85
769 964 2.159627 GCTGTCCGTCATGTTTGGTTAG 59.840 50.000 0.00 0.00 0.00 2.34
770 965 2.742053 CTGTCCGTCATGTTTGGTTAGG 59.258 50.000 0.00 0.00 0.00 2.69
771 966 2.105134 TGTCCGTCATGTTTGGTTAGGT 59.895 45.455 0.00 0.00 0.00 3.08
772 967 2.740447 GTCCGTCATGTTTGGTTAGGTC 59.260 50.000 0.00 0.00 0.00 3.85
773 968 2.369203 TCCGTCATGTTTGGTTAGGTCA 59.631 45.455 0.00 0.00 0.00 4.02
774 969 3.142951 CCGTCATGTTTGGTTAGGTCAA 58.857 45.455 0.00 0.00 0.00 3.18
775 970 3.058501 CCGTCATGTTTGGTTAGGTCAAC 60.059 47.826 0.00 0.00 36.32 3.18
787 982 4.394729 GTTAGGTCAACCAATGGTCTTCA 58.605 43.478 4.95 0.00 38.89 3.02
788 983 3.814504 AGGTCAACCAATGGTCTTCAT 57.185 42.857 4.95 0.00 38.89 2.57
789 984 4.118168 AGGTCAACCAATGGTCTTCATT 57.882 40.909 4.95 0.00 46.24 2.57
790 985 4.482990 AGGTCAACCAATGGTCTTCATTT 58.517 39.130 4.95 0.00 43.04 2.32
791 986 4.524328 AGGTCAACCAATGGTCTTCATTTC 59.476 41.667 4.95 0.00 43.04 2.17
792 987 4.475944 GTCAACCAATGGTCTTCATTTCG 58.524 43.478 4.95 0.00 43.04 3.46
793 988 4.023193 GTCAACCAATGGTCTTCATTTCGT 60.023 41.667 4.95 0.00 43.04 3.85
794 989 4.215399 TCAACCAATGGTCTTCATTTCGTC 59.785 41.667 4.95 0.00 43.04 4.20
795 990 3.081804 ACCAATGGTCTTCATTTCGTCC 58.918 45.455 0.00 0.00 43.04 4.79
796 991 3.244911 ACCAATGGTCTTCATTTCGTCCT 60.245 43.478 0.00 0.00 43.04 3.85
797 992 3.127548 CCAATGGTCTTCATTTCGTCCTG 59.872 47.826 0.00 0.00 43.04 3.86
798 993 3.703001 ATGGTCTTCATTTCGTCCTGT 57.297 42.857 0.00 0.00 30.55 4.00
799 994 4.819105 ATGGTCTTCATTTCGTCCTGTA 57.181 40.909 0.00 0.00 30.55 2.74
800 995 4.610605 TGGTCTTCATTTCGTCCTGTAA 57.389 40.909 0.00 0.00 0.00 2.41
801 996 4.963373 TGGTCTTCATTTCGTCCTGTAAA 58.037 39.130 0.00 0.00 0.00 2.01
802 997 4.753107 TGGTCTTCATTTCGTCCTGTAAAC 59.247 41.667 0.00 0.00 0.00 2.01
803 998 4.753107 GGTCTTCATTTCGTCCTGTAAACA 59.247 41.667 0.00 0.00 0.00 2.83
804 999 5.411669 GGTCTTCATTTCGTCCTGTAAACAT 59.588 40.000 0.00 0.00 0.00 2.71
805 1000 6.072673 GGTCTTCATTTCGTCCTGTAAACATT 60.073 38.462 0.00 0.00 0.00 2.71
806 1001 6.797033 GTCTTCATTTCGTCCTGTAAACATTG 59.203 38.462 0.00 0.00 0.00 2.82
807 1002 6.485313 TCTTCATTTCGTCCTGTAAACATTGT 59.515 34.615 0.00 0.00 0.00 2.71
808 1003 5.996219 TCATTTCGTCCTGTAAACATTGTG 58.004 37.500 0.00 0.00 0.00 3.33
809 1004 5.760743 TCATTTCGTCCTGTAAACATTGTGA 59.239 36.000 0.00 0.00 0.00 3.58
810 1005 5.412526 TTTCGTCCTGTAAACATTGTGAC 57.587 39.130 0.00 0.00 0.00 3.67
811 1006 3.054166 TCGTCCTGTAAACATTGTGACG 58.946 45.455 15.13 15.13 43.81 4.35
812 1007 2.156891 CGTCCTGTAAACATTGTGACGG 59.843 50.000 14.03 9.49 40.10 4.79
813 1008 3.135994 GTCCTGTAAACATTGTGACGGT 58.864 45.455 9.09 0.00 0.00 4.83
814 1009 3.185797 GTCCTGTAAACATTGTGACGGTC 59.814 47.826 0.00 0.00 0.00 4.79
815 1010 2.156891 CCTGTAAACATTGTGACGGTCG 59.843 50.000 3.34 0.00 0.00 4.79
816 1011 3.054166 CTGTAAACATTGTGACGGTCGA 58.946 45.455 3.34 0.00 0.00 4.20
817 1012 3.455327 TGTAAACATTGTGACGGTCGAA 58.545 40.909 3.34 0.00 0.00 3.71
818 1013 4.059511 TGTAAACATTGTGACGGTCGAAT 58.940 39.130 3.34 1.80 0.00 3.34
819 1014 5.228665 TGTAAACATTGTGACGGTCGAATA 58.771 37.500 3.34 0.00 0.00 1.75
820 1015 5.695363 TGTAAACATTGTGACGGTCGAATAA 59.305 36.000 3.34 0.00 0.00 1.40
821 1016 5.676532 AAACATTGTGACGGTCGAATAAA 57.323 34.783 3.34 0.00 0.00 1.40
822 1017 5.676532 AACATTGTGACGGTCGAATAAAA 57.323 34.783 3.34 0.00 0.00 1.52
823 1018 5.676532 ACATTGTGACGGTCGAATAAAAA 57.323 34.783 3.34 0.00 0.00 1.94
895 1090 1.659954 CTCTGTATCGAGCTGCGCC 60.660 63.158 4.18 0.00 40.61 6.53
972 1168 3.891977 CCATAGATCGAAGAGGGAGAACA 59.108 47.826 0.00 0.00 43.63 3.18
975 1171 3.436243 AGATCGAAGAGGGAGAACAAGT 58.564 45.455 0.00 0.00 43.63 3.16
1155 1351 0.686112 CACTCCTCCTCTCCTCCCAC 60.686 65.000 0.00 0.00 0.00 4.61
1323 1519 0.108138 CACTCCGGCTACTTTCCCTG 60.108 60.000 0.00 0.00 0.00 4.45
1654 1850 3.058293 TGTCGAGGTGTTTGATGAAATGC 60.058 43.478 0.00 0.00 0.00 3.56
1773 1969 1.337071 CAGATGTTGCATCATGGCCTC 59.663 52.381 14.89 1.41 0.00 4.70
2143 2339 5.192927 TCAATGGGTATTGTCAGATTGGAC 58.807 41.667 0.00 0.00 43.33 4.02
2374 2571 5.392919 GGGCAGCTTGAAAAATGTTTTGTTT 60.393 36.000 0.00 0.00 0.00 2.83
2395 2592 6.535150 TGTTTTACTTTCTGATATGCGAGAGG 59.465 38.462 0.00 0.00 0.00 3.69
2518 2715 7.175990 TGTTCCATAAAGATGTTTTACCAGGTC 59.824 37.037 0.00 0.00 0.00 3.85
2667 2864 1.466851 AAGGCCTTTGCAAGCAGTCC 61.467 55.000 13.78 1.75 40.13 3.85
3440 3638 8.706322 AAGTGGAAAGAACATTACCAAATAGT 57.294 30.769 0.00 0.00 32.32 2.12
3442 3640 9.802039 AGTGGAAAGAACATTACCAAATAGTTA 57.198 29.630 0.00 0.00 32.32 2.24
3543 3984 2.716217 AGCCAAGACCTGCTAATCAAC 58.284 47.619 0.00 0.00 35.69 3.18
3632 4074 3.870274 TCTGCACTGGAGATCATTTGAG 58.130 45.455 0.00 0.00 0.00 3.02
3741 4185 3.329225 AGAACCCTTCTTTCTGGGAGAAG 59.671 47.826 4.93 6.84 46.15 2.85
3824 4959 6.876789 TGCAAGTTTGATAAAAGGATCTCGTA 59.123 34.615 0.00 0.00 0.00 3.43
3882 5017 3.181503 GCACATTGGCAGAGTATTGTGAG 60.182 47.826 13.25 0.00 37.28 3.51
3916 5051 3.380004 ACGACCTGAATGTTTTGAAAGCA 59.620 39.130 0.00 0.00 0.00 3.91
4044 5192 6.491403 AGCAAGGTGTTCACTCAGATATTTTT 59.509 34.615 2.98 0.00 0.00 1.94
4081 5229 6.156949 TCCAGCTGTTCAATAGGTAAGAGATT 59.843 38.462 13.81 0.00 0.00 2.40
4769 5973 3.460857 CAAGTGGTGCTATCTACTCCC 57.539 52.381 0.00 0.00 0.00 4.30
4770 5974 3.034635 CAAGTGGTGCTATCTACTCCCT 58.965 50.000 0.00 0.00 0.00 4.20
4771 5975 2.952116 AGTGGTGCTATCTACTCCCTC 58.048 52.381 0.00 0.00 0.00 4.30
4772 5976 1.964933 GTGGTGCTATCTACTCCCTCC 59.035 57.143 0.00 0.00 0.00 4.30
4773 5977 1.249407 GGTGCTATCTACTCCCTCCG 58.751 60.000 0.00 0.00 0.00 4.63
4774 5978 1.479021 GGTGCTATCTACTCCCTCCGT 60.479 57.143 0.00 0.00 0.00 4.69
4775 5979 1.881324 GTGCTATCTACTCCCTCCGTC 59.119 57.143 0.00 0.00 0.00 4.79
4776 5980 1.202903 TGCTATCTACTCCCTCCGTCC 60.203 57.143 0.00 0.00 0.00 4.79
4777 5981 1.810959 CTATCTACTCCCTCCGTCCG 58.189 60.000 0.00 0.00 0.00 4.79
4778 5982 1.347050 CTATCTACTCCCTCCGTCCGA 59.653 57.143 0.00 0.00 0.00 4.55
4779 5983 0.549950 ATCTACTCCCTCCGTCCGAA 59.450 55.000 0.00 0.00 0.00 4.30
4780 5984 0.329261 TCTACTCCCTCCGTCCGAAA 59.671 55.000 0.00 0.00 0.00 3.46
4781 5985 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
4782 5986 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
4783 5987 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
4784 5988 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
4785 5989 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
4786 5990 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
4787 5991 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
4788 5992 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
4789 5993 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
4790 5994 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
4791 5995 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
4792 5996 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
4793 5997 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
4794 5998 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
4795 5999 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
4796 6000 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
4797 6001 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
4798 6002 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
4799 6003 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
4800 6004 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
4801 6005 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
4809 6013 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
4812 6016 8.246180 TGTCATCAAAATGGATAAAAAGAGAGC 58.754 33.333 0.00 0.00 33.42 4.09
4813 6017 7.704047 GTCATCAAAATGGATAAAAAGAGAGCC 59.296 37.037 0.00 0.00 33.42 4.70
4814 6018 7.616935 TCATCAAAATGGATAAAAAGAGAGCCT 59.383 33.333 0.00 0.00 33.42 4.58
4815 6019 7.781324 TCAAAATGGATAAAAAGAGAGCCTT 57.219 32.000 0.00 0.00 36.47 4.35
4816 6020 7.605449 TCAAAATGGATAAAAAGAGAGCCTTG 58.395 34.615 0.00 0.00 34.79 3.61
4817 6021 6.535963 AAATGGATAAAAAGAGAGCCTTGG 57.464 37.500 0.00 0.00 34.79 3.61
4818 6022 3.356290 TGGATAAAAAGAGAGCCTTGGC 58.644 45.455 2.97 2.97 34.79 4.52
4819 6023 2.356069 GGATAAAAAGAGAGCCTTGGCG 59.644 50.000 5.95 0.00 34.79 5.69
4820 6024 1.165270 TAAAAAGAGAGCCTTGGCGC 58.835 50.000 7.30 7.30 34.79 6.53
4821 6025 0.823356 AAAAAGAGAGCCTTGGCGCA 60.823 50.000 17.01 0.00 34.79 6.09
4822 6026 1.239968 AAAAGAGAGCCTTGGCGCAG 61.240 55.000 17.01 0.00 34.79 5.18
4823 6027 2.403132 AAAGAGAGCCTTGGCGCAGT 62.403 55.000 17.01 1.31 34.79 4.40
4824 6028 3.123620 GAGAGCCTTGGCGCAGTG 61.124 66.667 17.01 0.00 0.00 3.66
4825 6029 4.711949 AGAGCCTTGGCGCAGTGG 62.712 66.667 17.01 8.70 0.00 4.00
4827 6031 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
4828 6032 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
4829 6033 2.978018 GCCTTGGCGCAGTGGTAAC 61.978 63.158 10.83 0.00 0.00 2.50
4830 6034 2.677003 CCTTGGCGCAGTGGTAACG 61.677 63.158 10.83 0.00 42.51 3.18
4831 6035 1.666553 CTTGGCGCAGTGGTAACGA 60.667 57.895 10.83 0.00 42.51 3.85
4832 6036 1.225376 CTTGGCGCAGTGGTAACGAA 61.225 55.000 10.83 0.00 42.51 3.85
4833 6037 0.814410 TTGGCGCAGTGGTAACGAAA 60.814 50.000 10.83 0.00 42.51 3.46
4834 6038 0.604243 TGGCGCAGTGGTAACGAAAT 60.604 50.000 10.83 0.00 42.51 2.17
4835 6039 0.519961 GGCGCAGTGGTAACGAAATT 59.480 50.000 10.83 0.00 42.51 1.82
4836 6040 1.602191 GCGCAGTGGTAACGAAATTG 58.398 50.000 0.30 0.00 42.51 2.32
4837 6041 1.195900 GCGCAGTGGTAACGAAATTGA 59.804 47.619 0.30 0.00 42.51 2.57
4838 6042 2.159572 GCGCAGTGGTAACGAAATTGAT 60.160 45.455 0.30 0.00 42.51 2.57
4839 6043 3.416277 CGCAGTGGTAACGAAATTGATG 58.584 45.455 0.00 0.00 42.51 3.07
4840 6044 3.120338 CGCAGTGGTAACGAAATTGATGT 60.120 43.478 0.00 0.00 42.51 3.06
4841 6045 4.158384 GCAGTGGTAACGAAATTGATGTG 58.842 43.478 0.00 0.00 42.51 3.21
4842 6046 4.158384 CAGTGGTAACGAAATTGATGTGC 58.842 43.478 0.00 0.00 42.51 4.57
4843 6047 3.818210 AGTGGTAACGAAATTGATGTGCA 59.182 39.130 0.00 0.00 42.51 4.57
4844 6048 3.911964 GTGGTAACGAAATTGATGTGCAC 59.088 43.478 10.75 10.75 42.51 4.57
4845 6049 3.565902 TGGTAACGAAATTGATGTGCACA 59.434 39.130 24.08 24.08 42.51 4.57
4846 6050 3.911964 GGTAACGAAATTGATGTGCACAC 59.088 43.478 24.37 16.37 0.00 3.82
4847 6051 2.314561 ACGAAATTGATGTGCACACG 57.685 45.000 24.37 20.86 0.00 4.49
4848 6052 1.870402 ACGAAATTGATGTGCACACGA 59.130 42.857 24.37 15.90 0.00 4.35
4849 6053 2.233355 CGAAATTGATGTGCACACGAC 58.767 47.619 24.37 16.70 0.00 4.34
4850 6054 2.349343 CGAAATTGATGTGCACACGACA 60.349 45.455 24.37 19.11 0.00 4.35
4851 6055 3.667695 CGAAATTGATGTGCACACGACAT 60.668 43.478 24.37 5.44 36.73 3.06
4852 6056 2.905959 ATTGATGTGCACACGACATG 57.094 45.000 24.37 0.00 34.10 3.21
4853 6057 0.238025 TTGATGTGCACACGACATGC 59.762 50.000 24.37 6.31 43.68 4.06
4866 6070 4.722008 CATGCAATGCCCGATGTG 57.278 55.556 1.53 0.00 37.62 3.21
4867 6071 1.590525 CATGCAATGCCCGATGTGC 60.591 57.895 1.53 0.00 37.62 4.57
4868 6072 2.675772 TGCAATGCCCGATGTGCA 60.676 55.556 1.53 0.00 44.36 4.57
4869 6073 2.103538 GCAATGCCCGATGTGCAG 59.896 61.111 0.00 0.00 42.92 4.41
4870 6074 2.103538 CAATGCCCGATGTGCAGC 59.896 61.111 0.00 0.00 42.92 5.25
4871 6075 3.142838 AATGCCCGATGTGCAGCC 61.143 61.111 0.00 0.00 42.92 4.85
4875 6079 4.758251 CCCGATGTGCAGCCGACA 62.758 66.667 4.17 0.00 0.00 4.35
4876 6080 3.490759 CCGATGTGCAGCCGACAC 61.491 66.667 4.17 0.00 38.55 3.67
4880 6084 3.279116 TGTGCAGCCGACACAAGC 61.279 61.111 1.87 0.00 44.68 4.01
4881 6085 2.974698 GTGCAGCCGACACAAGCT 60.975 61.111 0.00 0.00 40.89 3.74
4882 6086 2.666190 TGCAGCCGACACAAGCTC 60.666 61.111 0.00 0.00 37.18 4.09
4883 6087 2.358003 GCAGCCGACACAAGCTCT 60.358 61.111 0.00 0.00 37.18 4.09
4884 6088 1.079819 GCAGCCGACACAAGCTCTA 60.080 57.895 0.00 0.00 37.18 2.43
4885 6089 1.355066 GCAGCCGACACAAGCTCTAC 61.355 60.000 0.00 0.00 37.18 2.59
4886 6090 0.038251 CAGCCGACACAAGCTCTACA 60.038 55.000 0.00 0.00 37.18 2.74
4887 6091 0.038159 AGCCGACACAAGCTCTACAC 60.038 55.000 0.00 0.00 32.71 2.90
4888 6092 1.014564 GCCGACACAAGCTCTACACC 61.015 60.000 0.00 0.00 0.00 4.16
4889 6093 0.732880 CCGACACAAGCTCTACACCG 60.733 60.000 0.00 0.00 0.00 4.94
4890 6094 0.039437 CGACACAAGCTCTACACCGT 60.039 55.000 0.00 0.00 0.00 4.83
4891 6095 1.699343 GACACAAGCTCTACACCGTC 58.301 55.000 0.00 0.00 0.00 4.79
4892 6096 1.000607 GACACAAGCTCTACACCGTCA 60.001 52.381 0.00 0.00 0.00 4.35
4893 6097 1.000163 ACACAAGCTCTACACCGTCAG 60.000 52.381 0.00 0.00 0.00 3.51
4894 6098 1.269723 CACAAGCTCTACACCGTCAGA 59.730 52.381 0.00 0.00 0.00 3.27
4895 6099 2.094494 CACAAGCTCTACACCGTCAGAT 60.094 50.000 0.00 0.00 0.00 2.90
4896 6100 2.563179 ACAAGCTCTACACCGTCAGATT 59.437 45.455 0.00 0.00 0.00 2.40
4897 6101 2.926200 CAAGCTCTACACCGTCAGATTG 59.074 50.000 0.00 0.00 0.00 2.67
4898 6102 1.134965 AGCTCTACACCGTCAGATTGC 60.135 52.381 0.00 0.00 0.00 3.56
4899 6103 1.927895 CTCTACACCGTCAGATTGCC 58.072 55.000 0.00 0.00 0.00 4.52
4900 6104 1.478510 CTCTACACCGTCAGATTGCCT 59.521 52.381 0.00 0.00 0.00 4.75
4901 6105 2.688446 CTCTACACCGTCAGATTGCCTA 59.312 50.000 0.00 0.00 0.00 3.93
4902 6106 2.688446 TCTACACCGTCAGATTGCCTAG 59.312 50.000 0.00 0.00 0.00 3.02
4903 6107 1.267121 ACACCGTCAGATTGCCTAGT 58.733 50.000 0.00 0.00 0.00 2.57
4904 6108 2.453521 ACACCGTCAGATTGCCTAGTA 58.546 47.619 0.00 0.00 0.00 1.82
4905 6109 3.031736 ACACCGTCAGATTGCCTAGTAT 58.968 45.455 0.00 0.00 0.00 2.12
4906 6110 3.068307 ACACCGTCAGATTGCCTAGTATC 59.932 47.826 0.00 0.00 0.00 2.24
4907 6111 3.068165 CACCGTCAGATTGCCTAGTATCA 59.932 47.826 0.00 0.00 0.00 2.15
4908 6112 3.704566 ACCGTCAGATTGCCTAGTATCAA 59.295 43.478 0.00 0.00 0.00 2.57
4909 6113 4.161565 ACCGTCAGATTGCCTAGTATCAAA 59.838 41.667 0.00 0.00 0.00 2.69
4910 6114 5.163301 ACCGTCAGATTGCCTAGTATCAAAT 60.163 40.000 0.00 0.00 0.00 2.32
4911 6115 5.760253 CCGTCAGATTGCCTAGTATCAAATT 59.240 40.000 0.00 0.00 0.00 1.82
4912 6116 6.260936 CCGTCAGATTGCCTAGTATCAAATTT 59.739 38.462 0.00 0.00 0.00 1.82
4913 6117 7.441157 CCGTCAGATTGCCTAGTATCAAATTTA 59.559 37.037 0.00 0.00 0.00 1.40
4914 6118 8.276325 CGTCAGATTGCCTAGTATCAAATTTAC 58.724 37.037 0.00 0.00 0.00 2.01
4915 6119 9.109393 GTCAGATTGCCTAGTATCAAATTTACA 57.891 33.333 0.00 0.00 0.00 2.41
4916 6120 9.679661 TCAGATTGCCTAGTATCAAATTTACAA 57.320 29.630 0.00 0.00 0.00 2.41
4919 6123 9.221775 GATTGCCTAGTATCAAATTTACAAACG 57.778 33.333 0.00 0.00 0.00 3.60
4920 6124 7.079182 TGCCTAGTATCAAATTTACAAACGG 57.921 36.000 0.00 0.00 0.00 4.44
4921 6125 5.969435 GCCTAGTATCAAATTTACAAACGGC 59.031 40.000 0.00 0.00 0.00 5.68
4922 6126 6.492254 CCTAGTATCAAATTTACAAACGGCC 58.508 40.000 0.00 0.00 0.00 6.13
4923 6127 6.317893 CCTAGTATCAAATTTACAAACGGCCT 59.682 38.462 0.00 0.00 0.00 5.19
4924 6128 5.949735 AGTATCAAATTTACAAACGGCCTG 58.050 37.500 0.00 0.00 0.00 4.85
4925 6129 5.708230 AGTATCAAATTTACAAACGGCCTGA 59.292 36.000 0.00 0.00 0.00 3.86
4926 6130 5.659440 ATCAAATTTACAAACGGCCTGAT 57.341 34.783 0.00 0.00 0.00 2.90
4927 6131 4.804108 TCAAATTTACAAACGGCCTGATG 58.196 39.130 0.00 0.00 0.00 3.07
4928 6132 3.866883 AATTTACAAACGGCCTGATGG 57.133 42.857 0.00 0.00 0.00 3.51
4929 6133 1.540267 TTTACAAACGGCCTGATGGG 58.460 50.000 0.00 0.00 38.36 4.00
4930 6134 0.693622 TTACAAACGGCCTGATGGGA 59.306 50.000 0.00 0.00 37.23 4.37
4931 6135 0.916086 TACAAACGGCCTGATGGGAT 59.084 50.000 0.00 0.00 37.23 3.85
4932 6136 0.916086 ACAAACGGCCTGATGGGATA 59.084 50.000 0.00 0.00 37.23 2.59
4933 6137 1.308998 CAAACGGCCTGATGGGATAC 58.691 55.000 0.00 0.00 37.23 2.24
4934 6138 0.916086 AAACGGCCTGATGGGATACA 59.084 50.000 0.00 0.00 37.23 2.29
4935 6139 0.180406 AACGGCCTGATGGGATACAC 59.820 55.000 0.00 0.00 37.23 2.90
4936 6140 1.071471 CGGCCTGATGGGATACACC 59.929 63.158 0.00 0.00 37.23 4.16
4937 6141 1.071471 GGCCTGATGGGATACACCG 59.929 63.158 0.00 0.00 40.11 4.94
4938 6142 1.071471 GCCTGATGGGATACACCGG 59.929 63.158 0.00 0.00 40.11 5.28
4939 6143 1.071471 CCTGATGGGATACACCGGC 59.929 63.158 0.00 0.00 40.11 6.13
4940 6144 1.410850 CCTGATGGGATACACCGGCT 61.411 60.000 0.00 0.00 40.11 5.52
4941 6145 0.250038 CTGATGGGATACACCGGCTG 60.250 60.000 0.00 1.20 40.11 4.85
4942 6146 0.689412 TGATGGGATACACCGGCTGA 60.689 55.000 0.00 0.00 40.11 4.26
4943 6147 0.034059 GATGGGATACACCGGCTGAG 59.966 60.000 0.00 0.00 40.11 3.35
4944 6148 0.691078 ATGGGATACACCGGCTGAGT 60.691 55.000 0.00 0.00 40.11 3.41
4945 6149 0.032912 TGGGATACACCGGCTGAGTA 60.033 55.000 0.00 0.00 40.11 2.59
4946 6150 1.339097 GGGATACACCGGCTGAGTAT 58.661 55.000 0.00 5.18 40.11 2.12
4947 6151 1.272769 GGGATACACCGGCTGAGTATC 59.727 57.143 20.85 20.85 41.97 2.24
4948 6152 1.068472 GGATACACCGGCTGAGTATCG 60.068 57.143 21.56 1.71 43.03 2.92
4949 6153 1.607628 GATACACCGGCTGAGTATCGT 59.392 52.381 16.97 3.02 38.61 3.73
4950 6154 1.019673 TACACCGGCTGAGTATCGTC 58.980 55.000 0.00 0.00 38.61 4.20
4951 6155 0.680280 ACACCGGCTGAGTATCGTCT 60.680 55.000 0.00 0.00 38.61 4.18
4952 6156 0.248661 CACCGGCTGAGTATCGTCTG 60.249 60.000 0.00 0.00 38.61 3.51
4953 6157 1.360551 CCGGCTGAGTATCGTCTGG 59.639 63.158 0.00 0.00 38.61 3.86
4954 6158 1.101635 CCGGCTGAGTATCGTCTGGA 61.102 60.000 0.00 0.00 38.61 3.86
4955 6159 0.738975 CGGCTGAGTATCGTCTGGAA 59.261 55.000 0.00 0.00 38.61 3.53
4956 6160 1.534175 CGGCTGAGTATCGTCTGGAAC 60.534 57.143 0.00 0.00 38.61 3.62
4957 6161 1.202428 GGCTGAGTATCGTCTGGAACC 60.202 57.143 0.00 0.00 38.61 3.62
4958 6162 1.534175 GCTGAGTATCGTCTGGAACCG 60.534 57.143 0.00 0.00 38.61 4.44
4959 6163 1.743958 CTGAGTATCGTCTGGAACCGT 59.256 52.381 0.00 0.00 38.61 4.83
4960 6164 1.741706 TGAGTATCGTCTGGAACCGTC 59.258 52.381 0.00 0.00 38.61 4.79
4961 6165 0.731417 AGTATCGTCTGGAACCGTCG 59.269 55.000 0.00 0.00 0.00 5.12
4962 6166 0.248377 GTATCGTCTGGAACCGTCGG 60.248 60.000 10.48 10.48 0.00 4.79
4963 6167 1.996786 TATCGTCTGGAACCGTCGGC 61.997 60.000 12.28 0.00 0.00 5.54
4964 6168 4.052229 CGTCTGGAACCGTCGGCT 62.052 66.667 12.28 0.00 0.00 5.52
4965 6169 2.432628 GTCTGGAACCGTCGGCTG 60.433 66.667 12.28 0.00 0.00 4.85
4966 6170 2.915659 TCTGGAACCGTCGGCTGT 60.916 61.111 12.28 0.00 0.00 4.40
4967 6171 1.604308 TCTGGAACCGTCGGCTGTA 60.604 57.895 12.28 0.00 0.00 2.74
4968 6172 0.968901 TCTGGAACCGTCGGCTGTAT 60.969 55.000 12.28 0.00 0.00 2.29
4969 6173 0.742505 CTGGAACCGTCGGCTGTATA 59.257 55.000 12.28 0.00 0.00 1.47
4970 6174 0.742505 TGGAACCGTCGGCTGTATAG 59.257 55.000 12.28 0.00 0.00 1.31
4982 6186 2.586258 CTGTATAGCAACGCTCCAGT 57.414 50.000 0.00 0.00 40.44 4.00
4983 6187 2.196749 CTGTATAGCAACGCTCCAGTG 58.803 52.381 0.00 0.00 40.44 3.66
4984 6188 1.134818 TGTATAGCAACGCTCCAGTGG 60.135 52.381 1.40 1.40 40.44 4.00
4985 6189 1.134788 GTATAGCAACGCTCCAGTGGT 60.135 52.381 9.54 0.00 40.44 4.16
4986 6190 1.191535 ATAGCAACGCTCCAGTGGTA 58.808 50.000 9.54 0.00 40.44 3.25
4987 6191 0.970640 TAGCAACGCTCCAGTGGTAA 59.029 50.000 9.54 0.00 40.44 2.85
4988 6192 0.107831 AGCAACGCTCCAGTGGTAAA 59.892 50.000 9.54 0.00 30.62 2.01
4989 6193 0.517316 GCAACGCTCCAGTGGTAAAG 59.483 55.000 9.54 0.00 0.00 1.85
4990 6194 0.517316 CAACGCTCCAGTGGTAAAGC 59.483 55.000 9.54 10.17 0.00 3.51
4991 6195 0.396811 AACGCTCCAGTGGTAAAGCT 59.603 50.000 16.82 4.30 32.55 3.74
4992 6196 0.320771 ACGCTCCAGTGGTAAAGCTG 60.321 55.000 16.82 13.02 32.55 4.24
4993 6197 1.639298 CGCTCCAGTGGTAAAGCTGC 61.639 60.000 16.82 0.00 32.55 5.25
4994 6198 0.322008 GCTCCAGTGGTAAAGCTGCT 60.322 55.000 9.54 0.00 0.00 4.24
4995 6199 1.446907 CTCCAGTGGTAAAGCTGCTG 58.553 55.000 9.54 0.00 0.00 4.41
4996 6200 0.606401 TCCAGTGGTAAAGCTGCTGC 60.606 55.000 9.54 7.62 40.05 5.25
4997 6201 1.589716 CCAGTGGTAAAGCTGCTGCC 61.590 60.000 12.44 7.07 40.80 4.85
4998 6202 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
4999 6203 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
5000 6204 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
5001 6205 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
5002 6206 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
5003 6207 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
5004 6208 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
5005 6209 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
5006 6210 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
5007 6211 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
5008 6212 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
5009 6213 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
5010 6214 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
5011 6215 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
5021 6225 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
5022 6226 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
5023 6227 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
5024 6228 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
5025 6229 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
5026 6230 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
5027 6231 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
5028 6232 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
5029 6233 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
5030 6234 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
5031 6235 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
5032 6236 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
5033 6237 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
5034 6238 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
5035 6239 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
5049 6253 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
5050 6254 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
5051 6255 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
5052 6256 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
5053 6257 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
5054 6258 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
5055 6259 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
5056 6260 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
5057 6261 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
5058 6262 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
5059 6263 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
5060 6264 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
5061 6265 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
5062 6266 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
5063 6267 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
5064 6268 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
5065 6269 3.019564 CAGAAATGTAGGGAAAGGCTGG 58.980 50.000 0.00 0.00 0.00 4.85
5066 6270 2.024941 AGAAATGTAGGGAAAGGCTGGG 60.025 50.000 0.00 0.00 0.00 4.45
5067 6271 1.382914 AATGTAGGGAAAGGCTGGGT 58.617 50.000 0.00 0.00 0.00 4.51
5068 6272 2.280308 ATGTAGGGAAAGGCTGGGTA 57.720 50.000 0.00 0.00 0.00 3.69
5069 6273 1.282382 TGTAGGGAAAGGCTGGGTAC 58.718 55.000 0.00 0.00 0.00 3.34
5070 6274 1.203389 TGTAGGGAAAGGCTGGGTACT 60.203 52.381 0.00 0.00 0.00 2.73
5071 6275 2.044769 TGTAGGGAAAGGCTGGGTACTA 59.955 50.000 0.00 0.00 0.00 1.82
5072 6276 2.588925 AGGGAAAGGCTGGGTACTAT 57.411 50.000 0.00 0.00 0.00 2.12
5073 6277 3.719368 AGGGAAAGGCTGGGTACTATA 57.281 47.619 0.00 0.00 0.00 1.31
5074 6278 3.588569 AGGGAAAGGCTGGGTACTATAG 58.411 50.000 0.00 0.00 0.00 1.31
5075 6279 3.209152 AGGGAAAGGCTGGGTACTATAGA 59.791 47.826 6.78 0.00 0.00 1.98
5076 6280 3.324268 GGGAAAGGCTGGGTACTATAGAC 59.676 52.174 6.78 0.39 0.00 2.59
5077 6281 3.324268 GGAAAGGCTGGGTACTATAGACC 59.676 52.174 6.78 9.47 36.12 3.85
5091 6295 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
5092 6296 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
5093 6297 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
5094 6298 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
5095 6299 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
5096 6300 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
5097 6301 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
5098 6302 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
5099 6303 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
5106 6310 4.735599 GACCCTTCCCCGGACCCT 62.736 72.222 0.73 0.00 0.00 4.34
5133 6337 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
5134 6338 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
5135 6339 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
5136 6340 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
5137 6341 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
5138 6342 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
5144 6348 3.373565 CACCGGGCTGCCCTTTTC 61.374 66.667 33.39 8.98 42.67 2.29
5145 6349 3.580319 ACCGGGCTGCCCTTTTCT 61.580 61.111 33.39 9.64 42.67 2.52
5146 6350 2.283173 CCGGGCTGCCCTTTTCTT 60.283 61.111 33.39 0.00 42.67 2.52
5147 6351 1.001393 CCGGGCTGCCCTTTTCTTA 60.001 57.895 33.39 0.00 42.67 2.10
5148 6352 1.032114 CCGGGCTGCCCTTTTCTTAG 61.032 60.000 33.39 16.14 42.67 2.18
5149 6353 0.035439 CGGGCTGCCCTTTTCTTAGA 60.035 55.000 33.39 0.00 42.67 2.10
5150 6354 1.613255 CGGGCTGCCCTTTTCTTAGAA 60.613 52.381 33.39 0.00 42.67 2.10
5151 6355 1.819288 GGGCTGCCCTTTTCTTAGAAC 59.181 52.381 30.42 0.00 41.34 3.01
5152 6356 2.555448 GGGCTGCCCTTTTCTTAGAACT 60.555 50.000 30.42 0.00 41.34 3.01
5153 6357 3.308188 GGGCTGCCCTTTTCTTAGAACTA 60.308 47.826 30.42 0.00 41.34 2.24
5154 6358 4.332828 GGCTGCCCTTTTCTTAGAACTAA 58.667 43.478 7.66 0.00 0.00 2.24
5155 6359 4.765339 GGCTGCCCTTTTCTTAGAACTAAA 59.235 41.667 7.66 0.00 0.00 1.85
5156 6360 5.243060 GGCTGCCCTTTTCTTAGAACTAAAA 59.757 40.000 7.66 0.00 0.00 1.52
5157 6361 6.071334 GGCTGCCCTTTTCTTAGAACTAAAAT 60.071 38.462 7.66 0.00 0.00 1.82
5158 6362 7.122204 GGCTGCCCTTTTCTTAGAACTAAAATA 59.878 37.037 7.66 0.00 0.00 1.40
5159 6363 7.968956 GCTGCCCTTTTCTTAGAACTAAAATAC 59.031 37.037 0.00 0.00 0.00 1.89
5160 6364 8.927675 TGCCCTTTTCTTAGAACTAAAATACA 57.072 30.769 0.00 0.00 0.00 2.29
5161 6365 9.528489 TGCCCTTTTCTTAGAACTAAAATACAT 57.472 29.630 0.00 0.00 0.00 2.29
5162 6366 9.788960 GCCCTTTTCTTAGAACTAAAATACATG 57.211 33.333 0.00 0.00 0.00 3.21
5198 6402 9.300681 TCTCTTTTATCCATTTTGATGACAAGT 57.699 29.630 0.00 0.00 37.32 3.16
5205 6409 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
5206 6410 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
5207 6411 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
5208 6412 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
5209 6413 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
5210 6414 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
5211 6415 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
5212 6416 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
5213 6417 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
5214 6418 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
5215 6419 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
5216 6420 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
5217 6421 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
5218 6422 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
5478 6682 4.154918 GGTGGATGACATCTCAAAGTCAAC 59.845 45.833 14.95 2.07 46.62 3.18
5523 6727 3.949586 TGATATGCCACCTTTGATCCA 57.050 42.857 0.00 0.00 0.00 3.41
5536 6740 4.324874 CCTTTGATCCAGGAGAATTCTGGT 60.325 45.833 14.00 0.00 39.18 4.00
5743 6950 7.676043 TCCTGGGTTTGATTGATTGGTTATTTA 59.324 33.333 0.00 0.00 0.00 1.40
5755 6962 7.327214 TGATTGGTTATTTATTCAGTTTGGCC 58.673 34.615 0.00 0.00 0.00 5.36
5857 7067 3.120752 GGAAAAGCTCGTCGTCCTTTTAC 60.121 47.826 18.43 16.58 38.49 2.01
5921 7131 3.922240 CAGTCATGCTGTAAATTGCAACC 59.078 43.478 0.00 0.00 42.74 3.77
5961 7171 3.752412 ATTGCACATTGACGTCTGATG 57.248 42.857 22.48 22.48 0.00 3.07
5991 7201 6.432783 TGGTGTACCCTGAATTTAGATGTTTG 59.567 38.462 0.00 0.00 34.29 2.93
6028 7238 2.959030 TCAGAATCATACTCCCTCCGTG 59.041 50.000 0.00 0.00 0.00 4.94
6029 7239 2.036475 CAGAATCATACTCCCTCCGTGG 59.964 54.545 0.00 0.00 0.00 4.94
6055 7265 4.742201 TTGCAGAGGCCGAGCGTC 62.742 66.667 11.54 9.61 42.77 5.19
6058 7268 4.504916 CAGAGGCCGAGCGTCAGG 62.505 72.222 16.95 7.99 44.54 3.86
6060 7270 3.138798 GAGGCCGAGCGTCAGGTA 61.139 66.667 11.90 0.00 42.14 3.08
6061 7271 3.127352 GAGGCCGAGCGTCAGGTAG 62.127 68.421 11.90 0.00 42.14 3.18
6062 7272 4.874977 GGCCGAGCGTCAGGTAGC 62.875 72.222 0.00 0.00 0.00 3.58
6067 7277 2.361357 AGCGTCAGGTAGCTCGGT 60.361 61.111 0.00 2.33 39.98 4.69
6068 7278 1.077930 AGCGTCAGGTAGCTCGGTA 60.078 57.895 6.01 0.00 39.98 4.02
6069 7279 0.465824 AGCGTCAGGTAGCTCGGTAT 60.466 55.000 6.01 0.00 39.98 2.73
6070 7280 0.040246 GCGTCAGGTAGCTCGGTATC 60.040 60.000 0.00 0.00 0.00 2.24
6071 7281 0.592148 CGTCAGGTAGCTCGGTATCC 59.408 60.000 0.00 0.00 0.00 2.59
6072 7282 0.960286 GTCAGGTAGCTCGGTATCCC 59.040 60.000 0.00 0.00 0.00 3.85
6073 7283 0.178970 TCAGGTAGCTCGGTATCCCC 60.179 60.000 0.00 0.00 0.00 4.81
6074 7284 0.178958 CAGGTAGCTCGGTATCCCCT 60.179 60.000 0.00 0.00 0.00 4.79
6075 7285 0.561680 AGGTAGCTCGGTATCCCCTT 59.438 55.000 0.00 0.00 0.00 3.95
6076 7286 0.967662 GGTAGCTCGGTATCCCCTTC 59.032 60.000 0.00 0.00 0.00 3.46
6077 7287 0.597072 GTAGCTCGGTATCCCCTTCG 59.403 60.000 0.00 0.00 0.00 3.79
6078 7288 0.184451 TAGCTCGGTATCCCCTTCGT 59.816 55.000 0.00 0.00 0.00 3.85
6079 7289 1.067582 GCTCGGTATCCCCTTCGTG 59.932 63.158 0.00 0.00 0.00 4.35
6080 7290 1.740285 CTCGGTATCCCCTTCGTGG 59.260 63.158 0.00 0.00 0.00 4.94
6089 7299 4.821935 CCTTCGTGGGAAAAGGCT 57.178 55.556 0.00 0.00 35.95 4.58
6090 7300 3.036431 CCTTCGTGGGAAAAGGCTT 57.964 52.632 0.00 0.00 35.95 4.35
6091 7301 1.328279 CCTTCGTGGGAAAAGGCTTT 58.672 50.000 6.68 6.68 35.95 3.51
6092 7302 1.000274 CCTTCGTGGGAAAAGGCTTTG 60.000 52.381 14.19 0.00 35.95 2.77
6093 7303 0.387565 TTCGTGGGAAAAGGCTTTGC 59.612 50.000 14.19 11.84 32.40 3.68
6094 7304 1.371635 CGTGGGAAAAGGCTTTGCG 60.372 57.895 14.19 9.51 33.89 4.85
6095 7305 1.791103 CGTGGGAAAAGGCTTTGCGA 61.791 55.000 14.19 0.00 33.89 5.10
6096 7306 0.603065 GTGGGAAAAGGCTTTGCGAT 59.397 50.000 14.19 0.00 33.89 4.58
6097 7307 1.000843 GTGGGAAAAGGCTTTGCGATT 59.999 47.619 14.19 0.00 33.89 3.34
6098 7308 1.272212 TGGGAAAAGGCTTTGCGATTC 59.728 47.619 14.19 6.66 33.89 2.52
6099 7309 1.272212 GGGAAAAGGCTTTGCGATTCA 59.728 47.619 14.19 0.00 33.89 2.57
6100 7310 2.094026 GGGAAAAGGCTTTGCGATTCAT 60.094 45.455 14.19 0.00 33.89 2.57
6101 7311 3.588955 GGAAAAGGCTTTGCGATTCATT 58.411 40.909 14.19 0.00 0.00 2.57
6102 7312 3.614176 GGAAAAGGCTTTGCGATTCATTC 59.386 43.478 14.19 3.68 0.00 2.67
6103 7313 2.947448 AAGGCTTTGCGATTCATTCC 57.053 45.000 0.00 0.00 0.00 3.01
6104 7314 2.134789 AGGCTTTGCGATTCATTCCT 57.865 45.000 0.00 0.00 0.00 3.36
6105 7315 1.747355 AGGCTTTGCGATTCATTCCTG 59.253 47.619 0.00 0.00 0.00 3.86
6106 7316 1.474077 GGCTTTGCGATTCATTCCTGT 59.526 47.619 0.00 0.00 0.00 4.00
6107 7317 2.478539 GGCTTTGCGATTCATTCCTGTC 60.479 50.000 0.00 0.00 0.00 3.51
6108 7318 2.162208 GCTTTGCGATTCATTCCTGTCA 59.838 45.455 0.00 0.00 0.00 3.58
6109 7319 3.181493 GCTTTGCGATTCATTCCTGTCAT 60.181 43.478 0.00 0.00 0.00 3.06
6110 7320 4.035558 GCTTTGCGATTCATTCCTGTCATA 59.964 41.667 0.00 0.00 0.00 2.15
6111 7321 5.739752 TTTGCGATTCATTCCTGTCATAG 57.260 39.130 0.00 0.00 0.00 2.23
6112 7322 3.133691 TGCGATTCATTCCTGTCATAGC 58.866 45.455 0.00 0.00 0.00 2.97
6113 7323 3.133691 GCGATTCATTCCTGTCATAGCA 58.866 45.455 0.00 0.00 0.00 3.49
6114 7324 3.059325 GCGATTCATTCCTGTCATAGCAC 60.059 47.826 0.00 0.00 0.00 4.40
6115 7325 4.375272 CGATTCATTCCTGTCATAGCACT 58.625 43.478 0.00 0.00 0.00 4.40
6116 7326 4.813161 CGATTCATTCCTGTCATAGCACTT 59.187 41.667 0.00 0.00 0.00 3.16
6117 7327 5.050499 CGATTCATTCCTGTCATAGCACTTC 60.050 44.000 0.00 0.00 0.00 3.01
6118 7328 5.426689 TTCATTCCTGTCATAGCACTTCT 57.573 39.130 0.00 0.00 0.00 2.85
6119 7329 6.544928 TTCATTCCTGTCATAGCACTTCTA 57.455 37.500 0.00 0.00 0.00 2.10
6120 7330 6.154203 TCATTCCTGTCATAGCACTTCTAG 57.846 41.667 0.00 0.00 0.00 2.43
6121 7331 4.392921 TTCCTGTCATAGCACTTCTAGC 57.607 45.455 0.00 0.00 0.00 3.42
6122 7332 3.365472 TCCTGTCATAGCACTTCTAGCA 58.635 45.455 0.00 0.00 0.00 3.49
6123 7333 3.382865 TCCTGTCATAGCACTTCTAGCAG 59.617 47.826 0.00 0.00 0.00 4.24
6124 7334 3.382865 CCTGTCATAGCACTTCTAGCAGA 59.617 47.826 0.00 0.00 32.27 4.26
6125 7335 4.358851 CTGTCATAGCACTTCTAGCAGAC 58.641 47.826 0.00 0.00 32.27 3.51
6126 7336 3.131223 TGTCATAGCACTTCTAGCAGACC 59.869 47.826 0.00 0.00 31.76 3.85
6127 7337 2.695666 TCATAGCACTTCTAGCAGACCC 59.304 50.000 0.00 0.00 0.00 4.46
6128 7338 1.486211 TAGCACTTCTAGCAGACCCC 58.514 55.000 0.00 0.00 0.00 4.95
6129 7339 1.153549 GCACTTCTAGCAGACCCCG 60.154 63.158 0.00 0.00 0.00 5.73
6130 7340 1.889530 GCACTTCTAGCAGACCCCGT 61.890 60.000 0.00 0.00 0.00 5.28
6131 7341 0.173708 CACTTCTAGCAGACCCCGTC 59.826 60.000 0.00 0.00 0.00 4.79
6132 7342 0.971447 ACTTCTAGCAGACCCCGTCC 60.971 60.000 0.00 0.00 32.18 4.79
6133 7343 1.677637 CTTCTAGCAGACCCCGTCCC 61.678 65.000 0.00 0.00 32.18 4.46
6134 7344 2.042843 CTAGCAGACCCCGTCCCT 60.043 66.667 0.00 0.00 32.18 4.20
6135 7345 2.043248 TAGCAGACCCCGTCCCTC 60.043 66.667 0.00 0.00 32.18 4.30
6138 7348 2.678934 CAGACCCCGTCCCTCGAA 60.679 66.667 0.00 0.00 42.86 3.71
6139 7349 2.118951 AGACCCCGTCCCTCGAAA 59.881 61.111 0.00 0.00 42.86 3.46
6140 7350 1.534717 AGACCCCGTCCCTCGAAAA 60.535 57.895 0.00 0.00 42.86 2.29
6141 7351 1.123246 AGACCCCGTCCCTCGAAAAA 61.123 55.000 0.00 0.00 42.86 1.94
6182 7392 1.729149 GCAAAATCTCGACCCGCAAAG 60.729 52.381 0.00 0.00 0.00 2.77
6204 7414 1.741993 CGTTTGCAGTTTCACGAAGG 58.258 50.000 0.00 0.00 34.49 3.46
6706 7997 4.375569 ACGAACTCGACGTCCTCT 57.624 55.556 10.58 0.00 43.02 3.69
6712 8003 1.747367 CTCGACGTCCTCTGGCTCT 60.747 63.158 10.58 0.00 0.00 4.09
6737 8028 1.481056 CCACTTCCTCTTCACGGGGT 61.481 60.000 0.00 0.00 0.00 4.95
6843 8167 0.549950 TACTCCTCCGTCTCCCGAAT 59.450 55.000 0.00 0.00 39.56 3.34
6892 8234 3.003763 GGTCCACCTCTTCGCCCT 61.004 66.667 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.760047 GTGTCTCGGTGCCGCCAT 62.760 66.667 5.64 0.00 39.59 4.40
72 73 3.325902 CCTCTACGAGGCCGACTAT 57.674 57.895 0.00 0.00 43.29 2.12
183 241 2.766229 GCCACTCCTCTCTCCCCC 60.766 72.222 0.00 0.00 0.00 5.40
205 273 3.744719 CGACCTCTCACGGCCGAA 61.745 66.667 35.90 18.67 0.00 4.30
211 279 2.115911 CCCCTCTCGACCTCTCACG 61.116 68.421 0.00 0.00 0.00 4.35
237 305 0.043485 GAACCTTCTCCCCCTCTCCT 59.957 60.000 0.00 0.00 0.00 3.69
239 307 1.199615 CAGAACCTTCTCCCCCTCTC 58.800 60.000 0.00 0.00 34.74 3.20
240 308 0.494095 ACAGAACCTTCTCCCCCTCT 59.506 55.000 0.00 0.00 34.74 3.69
241 309 0.615850 CACAGAACCTTCTCCCCCTC 59.384 60.000 0.00 0.00 34.74 4.30
242 310 0.193574 TCACAGAACCTTCTCCCCCT 59.806 55.000 0.00 0.00 34.74 4.79
243 311 1.003696 CTTCACAGAACCTTCTCCCCC 59.996 57.143 0.00 0.00 34.74 5.40
251 320 3.322254 CACACTACCTCTTCACAGAACCT 59.678 47.826 0.00 0.00 0.00 3.50
261 347 1.270147 GGTGAACGCACACTACCTCTT 60.270 52.381 11.30 0.00 46.96 2.85
262 348 0.317479 GGTGAACGCACACTACCTCT 59.683 55.000 11.30 0.00 46.96 3.69
267 353 2.356553 GCCGGTGAACGCACACTA 60.357 61.111 1.90 0.00 46.96 2.74
615 799 1.175983 TGGCAACGAAAAATCGGCCT 61.176 50.000 15.84 0.00 39.83 5.19
699 894 4.747108 AGTTTGTGAGTCTTGACATTCGAG 59.253 41.667 3.49 0.00 0.00 4.04
700 895 4.693283 AGTTTGTGAGTCTTGACATTCGA 58.307 39.130 3.49 0.00 0.00 3.71
701 896 4.375405 CGAGTTTGTGAGTCTTGACATTCG 60.375 45.833 3.49 0.00 0.00 3.34
702 897 4.609336 GCGAGTTTGTGAGTCTTGACATTC 60.609 45.833 3.49 0.00 0.00 2.67
703 898 3.248602 GCGAGTTTGTGAGTCTTGACATT 59.751 43.478 3.49 0.00 0.00 2.71
704 899 2.802816 GCGAGTTTGTGAGTCTTGACAT 59.197 45.455 3.49 0.00 0.00 3.06
705 900 2.201732 GCGAGTTTGTGAGTCTTGACA 58.798 47.619 3.49 0.00 0.00 3.58
706 901 2.201732 TGCGAGTTTGTGAGTCTTGAC 58.798 47.619 0.00 0.00 0.00 3.18
707 902 2.595124 TGCGAGTTTGTGAGTCTTGA 57.405 45.000 0.00 0.00 0.00 3.02
708 903 3.611517 CTTTGCGAGTTTGTGAGTCTTG 58.388 45.455 0.00 0.00 0.00 3.02
709 904 2.032178 GCTTTGCGAGTTTGTGAGTCTT 59.968 45.455 0.00 0.00 0.00 3.01
710 905 1.599542 GCTTTGCGAGTTTGTGAGTCT 59.400 47.619 0.00 0.00 0.00 3.24
711 906 1.330521 TGCTTTGCGAGTTTGTGAGTC 59.669 47.619 0.00 0.00 0.00 3.36
712 907 1.064060 GTGCTTTGCGAGTTTGTGAGT 59.936 47.619 0.00 0.00 0.00 3.41
713 908 1.063912 TGTGCTTTGCGAGTTTGTGAG 59.936 47.619 0.00 0.00 0.00 3.51
714 909 1.090728 TGTGCTTTGCGAGTTTGTGA 58.909 45.000 0.00 0.00 0.00 3.58
715 910 1.191096 GTGTGCTTTGCGAGTTTGTG 58.809 50.000 0.00 0.00 0.00 3.33
716 911 0.808125 TGTGTGCTTTGCGAGTTTGT 59.192 45.000 0.00 0.00 0.00 2.83
717 912 2.124011 ATGTGTGCTTTGCGAGTTTG 57.876 45.000 0.00 0.00 0.00 2.93
718 913 2.869233 AATGTGTGCTTTGCGAGTTT 57.131 40.000 0.00 0.00 0.00 2.66
719 914 3.119849 GGATAATGTGTGCTTTGCGAGTT 60.120 43.478 0.00 0.00 0.00 3.01
720 915 2.420022 GGATAATGTGTGCTTTGCGAGT 59.580 45.455 0.00 0.00 0.00 4.18
721 916 2.223340 GGGATAATGTGTGCTTTGCGAG 60.223 50.000 0.00 0.00 0.00 5.03
722 917 1.742831 GGGATAATGTGTGCTTTGCGA 59.257 47.619 0.00 0.00 0.00 5.10
723 918 1.745087 AGGGATAATGTGTGCTTTGCG 59.255 47.619 0.00 0.00 0.00 4.85
724 919 3.947834 ACTAGGGATAATGTGTGCTTTGC 59.052 43.478 0.00 0.00 0.00 3.68
725 920 4.336433 CCACTAGGGATAATGTGTGCTTTG 59.664 45.833 0.00 0.00 40.01 2.77
726 921 4.526970 CCACTAGGGATAATGTGTGCTTT 58.473 43.478 0.00 0.00 40.01 3.51
727 922 3.685550 GCCACTAGGGATAATGTGTGCTT 60.686 47.826 0.00 0.00 40.01 3.91
728 923 2.158755 GCCACTAGGGATAATGTGTGCT 60.159 50.000 0.00 0.00 40.01 4.40
729 924 2.158755 AGCCACTAGGGATAATGTGTGC 60.159 50.000 0.00 0.00 40.01 4.57
730 925 3.118261 ACAGCCACTAGGGATAATGTGTG 60.118 47.826 0.00 0.00 40.01 3.82
731 926 3.115390 ACAGCCACTAGGGATAATGTGT 58.885 45.455 0.00 0.00 40.01 3.72
732 927 3.495100 GGACAGCCACTAGGGATAATGTG 60.495 52.174 0.00 0.00 40.01 3.21
733 928 2.706190 GGACAGCCACTAGGGATAATGT 59.294 50.000 0.00 0.00 40.01 2.71
734 929 2.289072 CGGACAGCCACTAGGGATAATG 60.289 54.545 0.00 0.00 40.01 1.90
735 930 1.971357 CGGACAGCCACTAGGGATAAT 59.029 52.381 0.00 0.00 40.01 1.28
736 931 1.342674 ACGGACAGCCACTAGGGATAA 60.343 52.381 0.00 0.00 40.01 1.75
737 932 0.260816 ACGGACAGCCACTAGGGATA 59.739 55.000 0.00 0.00 40.01 2.59
738 933 1.001760 ACGGACAGCCACTAGGGAT 59.998 57.895 0.00 0.00 40.01 3.85
739 934 1.681327 GACGGACAGCCACTAGGGA 60.681 63.158 0.00 0.00 40.01 4.20
740 935 1.330655 ATGACGGACAGCCACTAGGG 61.331 60.000 0.00 0.00 40.85 3.53
741 936 0.179100 CATGACGGACAGCCACTAGG 60.179 60.000 0.00 0.00 38.23 3.02
742 937 0.532573 ACATGACGGACAGCCACTAG 59.467 55.000 0.00 0.00 0.00 2.57
743 938 0.973632 AACATGACGGACAGCCACTA 59.026 50.000 0.00 0.00 0.00 2.74
744 939 0.108585 AAACATGACGGACAGCCACT 59.891 50.000 0.00 0.00 0.00 4.00
745 940 0.238289 CAAACATGACGGACAGCCAC 59.762 55.000 0.00 0.00 0.00 5.01
746 941 0.888736 CCAAACATGACGGACAGCCA 60.889 55.000 0.00 0.00 0.00 4.75
747 942 0.889186 ACCAAACATGACGGACAGCC 60.889 55.000 0.00 0.00 0.00 4.85
748 943 0.951558 AACCAAACATGACGGACAGC 59.048 50.000 0.00 0.00 0.00 4.40
749 944 2.742053 CCTAACCAAACATGACGGACAG 59.258 50.000 0.00 0.00 0.00 3.51
750 945 2.105134 ACCTAACCAAACATGACGGACA 59.895 45.455 0.00 0.00 0.00 4.02
751 946 2.740447 GACCTAACCAAACATGACGGAC 59.260 50.000 0.00 0.00 0.00 4.79
752 947 2.369203 TGACCTAACCAAACATGACGGA 59.631 45.455 0.00 0.00 0.00 4.69
753 948 2.773487 TGACCTAACCAAACATGACGG 58.227 47.619 0.00 0.00 0.00 4.79
754 949 4.141855 GTTGACCTAACCAAACATGACG 57.858 45.455 0.00 0.00 33.01 4.35
764 959 7.475786 AATGAAGACCATTGGTTGACCTAACC 61.476 42.308 10.29 1.95 45.89 2.85
765 960 4.394729 TGAAGACCATTGGTTGACCTAAC 58.605 43.478 10.29 2.00 35.25 2.34
766 961 4.715534 TGAAGACCATTGGTTGACCTAA 57.284 40.909 10.29 0.00 35.25 2.69
767 962 4.927267 ATGAAGACCATTGGTTGACCTA 57.073 40.909 10.29 0.00 35.25 3.08
768 963 3.814504 ATGAAGACCATTGGTTGACCT 57.185 42.857 10.29 0.00 35.25 3.85
769 964 4.615912 CGAAATGAAGACCATTGGTTGACC 60.616 45.833 10.29 0.00 44.28 4.02
770 965 4.023193 ACGAAATGAAGACCATTGGTTGAC 60.023 41.667 10.29 5.13 44.28 3.18
771 966 4.141287 ACGAAATGAAGACCATTGGTTGA 58.859 39.130 10.29 0.00 44.28 3.18
772 967 4.475944 GACGAAATGAAGACCATTGGTTG 58.524 43.478 10.29 0.00 44.28 3.77
773 968 3.506067 GGACGAAATGAAGACCATTGGTT 59.494 43.478 10.29 0.00 44.28 3.67
774 969 3.081804 GGACGAAATGAAGACCATTGGT 58.918 45.455 8.42 8.42 44.28 3.67
775 970 3.127548 CAGGACGAAATGAAGACCATTGG 59.872 47.826 0.00 0.00 44.28 3.16
776 971 3.753272 ACAGGACGAAATGAAGACCATTG 59.247 43.478 0.00 0.00 44.28 2.82
777 972 4.021102 ACAGGACGAAATGAAGACCATT 57.979 40.909 0.00 0.00 46.86 3.16
778 973 3.703001 ACAGGACGAAATGAAGACCAT 57.297 42.857 0.00 0.00 36.99 3.55
779 974 4.610605 TTACAGGACGAAATGAAGACCA 57.389 40.909 0.00 0.00 0.00 4.02
780 975 4.753107 TGTTTACAGGACGAAATGAAGACC 59.247 41.667 0.00 0.00 0.00 3.85
781 976 5.917541 TGTTTACAGGACGAAATGAAGAC 57.082 39.130 0.00 0.00 0.00 3.01
782 977 6.485313 ACAATGTTTACAGGACGAAATGAAGA 59.515 34.615 0.00 0.00 0.00 2.87
783 978 6.578545 CACAATGTTTACAGGACGAAATGAAG 59.421 38.462 0.00 0.00 0.00 3.02
784 979 6.261158 TCACAATGTTTACAGGACGAAATGAA 59.739 34.615 0.00 0.00 0.00 2.57
785 980 5.760743 TCACAATGTTTACAGGACGAAATGA 59.239 36.000 0.00 0.00 0.00 2.57
786 981 5.851177 GTCACAATGTTTACAGGACGAAATG 59.149 40.000 0.00 0.00 0.00 2.32
787 982 5.333798 CGTCACAATGTTTACAGGACGAAAT 60.334 40.000 13.93 0.00 46.71 2.17
788 983 4.025563 CGTCACAATGTTTACAGGACGAAA 60.026 41.667 13.93 0.00 46.71 3.46
789 984 3.491639 CGTCACAATGTTTACAGGACGAA 59.508 43.478 13.93 0.00 46.71 3.85
790 985 3.054166 CGTCACAATGTTTACAGGACGA 58.946 45.455 13.93 0.00 46.71 4.20
791 986 2.156891 CCGTCACAATGTTTACAGGACG 59.843 50.000 12.68 12.68 44.29 4.79
792 987 3.135994 ACCGTCACAATGTTTACAGGAC 58.864 45.455 10.88 2.74 0.00 3.85
793 988 3.395639 GACCGTCACAATGTTTACAGGA 58.604 45.455 10.88 0.00 0.00 3.86
794 989 2.156891 CGACCGTCACAATGTTTACAGG 59.843 50.000 0.00 0.00 0.00 4.00
795 990 3.054166 TCGACCGTCACAATGTTTACAG 58.946 45.455 0.00 0.00 0.00 2.74
796 991 3.095102 TCGACCGTCACAATGTTTACA 57.905 42.857 0.00 0.00 0.00 2.41
797 992 4.657075 ATTCGACCGTCACAATGTTTAC 57.343 40.909 0.00 0.00 0.00 2.01
798 993 6.782298 TTTATTCGACCGTCACAATGTTTA 57.218 33.333 0.00 0.00 0.00 2.01
799 994 5.676532 TTTATTCGACCGTCACAATGTTT 57.323 34.783 0.00 0.00 0.00 2.83
800 995 5.676532 TTTTATTCGACCGTCACAATGTT 57.323 34.783 0.00 0.00 0.00 2.71
801 996 5.676532 TTTTTATTCGACCGTCACAATGT 57.323 34.783 0.00 0.00 0.00 2.71
843 1038 2.414785 CCGCCGCCTATGCCTTTTT 61.415 57.895 0.00 0.00 0.00 1.94
844 1039 2.828549 CCGCCGCCTATGCCTTTT 60.829 61.111 0.00 0.00 0.00 2.27
895 1090 0.464554 GGGGAAGAAGAGGATTGCGG 60.465 60.000 0.00 0.00 0.00 5.69
899 1094 2.209758 GGGAAGGGGAAGAAGAGGATT 58.790 52.381 0.00 0.00 0.00 3.01
989 1185 2.474816 AGCGATACATTTCTTCTCCGC 58.525 47.619 0.00 0.00 41.43 5.54
1341 1537 0.468400 AGGATAGGGACGGCAGAGTC 60.468 60.000 0.00 0.00 40.25 3.36
1654 1850 1.576421 GCAACACAGCCCTCTTTCG 59.424 57.895 0.00 0.00 0.00 3.46
1773 1969 6.603237 TTGTAAGTGATCATATTCGGCTTG 57.397 37.500 0.00 0.00 0.00 4.01
2374 2571 5.010112 CCTCCTCTCGCATATCAGAAAGTAA 59.990 44.000 0.00 0.00 0.00 2.24
2518 2715 1.665679 GATCGCATTGTACACCTGTGG 59.334 52.381 14.82 5.42 34.19 4.17
2667 2864 2.242926 TCCTCTGCTTCAGATATCCGG 58.757 52.381 0.00 0.00 39.92 5.14
3223 3421 2.286654 GCAGCTAATGATTTCGCAGTCC 60.287 50.000 0.00 0.00 0.00 3.85
3543 3984 6.183360 GGAATCCCAAATCTTGTGATACACAG 60.183 42.308 4.82 1.17 45.39 3.66
3632 4074 5.347635 GTCAAAAACACCAGTTCTTTCAACC 59.652 40.000 0.00 0.00 36.84 3.77
3764 4899 4.943705 TGGTGCCTGCAAAACATTTAAAAA 59.056 33.333 0.00 0.00 0.00 1.94
3770 4905 1.761784 TCTTGGTGCCTGCAAAACATT 59.238 42.857 0.00 0.00 0.00 2.71
3824 4959 0.319405 GCCAAGGCATTTGCTTGAGT 59.681 50.000 6.14 0.00 41.70 3.41
3882 5017 9.620660 AAACATTCAGGTCGTTTGTTAATATTC 57.379 29.630 0.00 0.00 31.87 1.75
4044 5192 7.517614 TTGAACAGCTGGACATTAATAAACA 57.482 32.000 19.93 0.00 0.00 2.83
4765 5969 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
4766 5970 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
4767 5971 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
4768 5972 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
4769 5973 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
4770 5974 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
4771 5975 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
4772 5976 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
4773 5977 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
4774 5978 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
4775 5979 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
4776 5980 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
4783 5987 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
4786 5990 8.246180 GCTCTCTTTTTATCCATTTTGATGACA 58.754 33.333 0.00 0.00 0.00 3.58
4787 5991 7.704047 GGCTCTCTTTTTATCCATTTTGATGAC 59.296 37.037 0.00 0.00 0.00 3.06
4788 5992 7.616935 AGGCTCTCTTTTTATCCATTTTGATGA 59.383 33.333 0.00 0.00 0.00 2.92
4789 5993 7.779073 AGGCTCTCTTTTTATCCATTTTGATG 58.221 34.615 0.00 0.00 0.00 3.07
4790 5994 7.968014 AGGCTCTCTTTTTATCCATTTTGAT 57.032 32.000 0.00 0.00 0.00 2.57
4791 5995 7.309990 CCAAGGCTCTCTTTTTATCCATTTTGA 60.310 37.037 0.00 0.00 32.41 2.69
4792 5996 6.815142 CCAAGGCTCTCTTTTTATCCATTTTG 59.185 38.462 0.00 0.00 32.41 2.44
4793 5997 6.575056 GCCAAGGCTCTCTTTTTATCCATTTT 60.575 38.462 3.29 0.00 38.26 1.82
4794 5998 5.105187 GCCAAGGCTCTCTTTTTATCCATTT 60.105 40.000 3.29 0.00 38.26 2.32
4795 5999 4.403752 GCCAAGGCTCTCTTTTTATCCATT 59.596 41.667 3.29 0.00 38.26 3.16
4796 6000 3.956848 GCCAAGGCTCTCTTTTTATCCAT 59.043 43.478 3.29 0.00 38.26 3.41
4797 6001 3.356290 GCCAAGGCTCTCTTTTTATCCA 58.644 45.455 3.29 0.00 38.26 3.41
4798 6002 2.356069 CGCCAAGGCTCTCTTTTTATCC 59.644 50.000 9.73 0.00 39.32 2.59
4799 6003 2.223363 GCGCCAAGGCTCTCTTTTTATC 60.223 50.000 9.73 0.00 39.32 1.75
4800 6004 1.745653 GCGCCAAGGCTCTCTTTTTAT 59.254 47.619 9.73 0.00 39.32 1.40
4801 6005 1.165270 GCGCCAAGGCTCTCTTTTTA 58.835 50.000 9.73 0.00 39.32 1.52
4802 6006 0.823356 TGCGCCAAGGCTCTCTTTTT 60.823 50.000 4.18 0.00 39.32 1.94
4803 6007 1.228245 TGCGCCAAGGCTCTCTTTT 60.228 52.632 4.18 0.00 39.32 2.27
4804 6008 1.673665 CTGCGCCAAGGCTCTCTTT 60.674 57.895 4.18 0.00 39.32 2.52
4805 6009 2.046507 CTGCGCCAAGGCTCTCTT 60.047 61.111 4.18 0.00 39.32 2.85
4806 6010 3.317571 ACTGCGCCAAGGCTCTCT 61.318 61.111 4.18 0.00 39.32 3.10
4807 6011 3.123620 CACTGCGCCAAGGCTCTC 61.124 66.667 4.18 0.00 39.32 3.20
4808 6012 4.711949 CCACTGCGCCAAGGCTCT 62.712 66.667 4.18 0.00 39.32 4.09
4809 6013 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
4810 6014 3.190738 TTACCACTGCGCCAAGGCT 62.191 57.895 4.18 0.00 39.32 4.58
4811 6015 2.671619 TTACCACTGCGCCAAGGC 60.672 61.111 4.18 0.00 37.85 4.35
4812 6016 2.677003 CGTTACCACTGCGCCAAGG 61.677 63.158 4.18 6.21 0.00 3.61
4813 6017 1.225376 TTCGTTACCACTGCGCCAAG 61.225 55.000 4.18 0.00 0.00 3.61
4814 6018 0.814410 TTTCGTTACCACTGCGCCAA 60.814 50.000 4.18 0.00 0.00 4.52
4815 6019 0.604243 ATTTCGTTACCACTGCGCCA 60.604 50.000 4.18 0.00 0.00 5.69
4816 6020 0.519961 AATTTCGTTACCACTGCGCC 59.480 50.000 4.18 0.00 0.00 6.53
4817 6021 1.195900 TCAATTTCGTTACCACTGCGC 59.804 47.619 0.00 0.00 0.00 6.09
4818 6022 3.120338 ACATCAATTTCGTTACCACTGCG 60.120 43.478 0.00 0.00 0.00 5.18
4819 6023 4.158384 CACATCAATTTCGTTACCACTGC 58.842 43.478 0.00 0.00 0.00 4.40
4820 6024 4.158384 GCACATCAATTTCGTTACCACTG 58.842 43.478 0.00 0.00 0.00 3.66
4821 6025 3.818210 TGCACATCAATTTCGTTACCACT 59.182 39.130 0.00 0.00 0.00 4.00
4822 6026 3.911964 GTGCACATCAATTTCGTTACCAC 59.088 43.478 13.17 0.00 0.00 4.16
4823 6027 3.565902 TGTGCACATCAATTTCGTTACCA 59.434 39.130 17.42 0.00 0.00 3.25
4824 6028 3.911964 GTGTGCACATCAATTTCGTTACC 59.088 43.478 24.69 0.19 0.00 2.85
4825 6029 3.597825 CGTGTGCACATCAATTTCGTTAC 59.402 43.478 24.69 3.92 0.00 2.50
4826 6030 3.495001 TCGTGTGCACATCAATTTCGTTA 59.505 39.130 24.69 1.99 0.00 3.18
4827 6031 2.289274 TCGTGTGCACATCAATTTCGTT 59.711 40.909 24.69 0.00 0.00 3.85
4828 6032 1.870402 TCGTGTGCACATCAATTTCGT 59.130 42.857 24.69 0.00 0.00 3.85
4829 6033 2.233355 GTCGTGTGCACATCAATTTCG 58.767 47.619 24.69 19.19 0.00 3.46
4830 6034 3.266541 TGTCGTGTGCACATCAATTTC 57.733 42.857 24.69 7.07 0.00 2.17
4831 6035 3.567530 CATGTCGTGTGCACATCAATTT 58.432 40.909 24.69 4.07 31.83 1.82
4832 6036 2.669113 GCATGTCGTGTGCACATCAATT 60.669 45.455 24.69 5.77 42.08 2.32
4833 6037 1.135603 GCATGTCGTGTGCACATCAAT 60.136 47.619 24.69 11.72 42.08 2.57
4834 6038 0.238025 GCATGTCGTGTGCACATCAA 59.762 50.000 24.69 9.80 42.08 2.57
4835 6039 0.883814 TGCATGTCGTGTGCACATCA 60.884 50.000 24.69 21.21 46.76 3.07
4836 6040 1.868306 TGCATGTCGTGTGCACATC 59.132 52.632 24.69 16.44 46.76 3.06
4837 6041 4.061949 TGCATGTCGTGTGCACAT 57.938 50.000 24.69 2.86 46.76 3.21
4841 6045 1.802715 GGCATTGCATGTCGTGTGC 60.803 57.895 11.39 0.00 42.81 4.57
4842 6046 1.153978 GGGCATTGCATGTCGTGTG 60.154 57.895 11.39 0.00 35.21 3.82
4843 6047 2.689785 CGGGCATTGCATGTCGTGT 61.690 57.895 11.39 0.00 35.21 4.49
4844 6048 1.717791 ATCGGGCATTGCATGTCGTG 61.718 55.000 11.39 0.00 35.21 4.35
4845 6049 1.451927 ATCGGGCATTGCATGTCGT 60.452 52.632 11.39 0.00 35.21 4.34
4846 6050 1.009335 CATCGGGCATTGCATGTCG 60.009 57.895 11.39 8.52 35.21 4.35
4847 6051 0.248743 CACATCGGGCATTGCATGTC 60.249 55.000 11.39 0.00 0.00 3.06
4848 6052 1.811195 CACATCGGGCATTGCATGT 59.189 52.632 11.39 8.95 0.00 3.21
4849 6053 1.590525 GCACATCGGGCATTGCATG 60.591 57.895 11.39 8.31 34.97 4.06
4850 6054 2.011741 CTGCACATCGGGCATTGCAT 62.012 55.000 11.39 0.00 43.74 3.96
4851 6055 2.675772 TGCACATCGGGCATTGCA 60.676 55.556 11.39 0.00 42.60 4.08
4852 6056 2.103538 CTGCACATCGGGCATTGC 59.896 61.111 0.00 0.00 41.06 3.56
4853 6057 2.103538 GCTGCACATCGGGCATTG 59.896 61.111 0.00 0.00 41.06 2.82
4854 6058 3.142838 GGCTGCACATCGGGCATT 61.143 61.111 0.50 0.00 45.28 3.56
4858 6062 4.758251 TGTCGGCTGCACATCGGG 62.758 66.667 0.50 0.00 0.00 5.14
4859 6063 3.490759 GTGTCGGCTGCACATCGG 61.491 66.667 13.18 0.00 36.88 4.18
4860 6064 2.231745 CTTGTGTCGGCTGCACATCG 62.232 60.000 19.07 11.95 44.91 3.84
4861 6065 1.499056 CTTGTGTCGGCTGCACATC 59.501 57.895 19.07 7.00 44.91 3.06
4862 6066 2.620112 GCTTGTGTCGGCTGCACAT 61.620 57.895 19.07 0.00 44.91 3.21
4863 6067 3.279116 GCTTGTGTCGGCTGCACA 61.279 61.111 15.83 15.83 44.05 4.57
4864 6068 2.959357 GAGCTTGTGTCGGCTGCAC 61.959 63.158 11.69 11.69 39.05 4.57
4865 6069 1.815817 TAGAGCTTGTGTCGGCTGCA 61.816 55.000 0.50 0.00 39.05 4.41
4866 6070 1.079819 TAGAGCTTGTGTCGGCTGC 60.080 57.895 0.00 0.00 39.05 5.25
4867 6071 0.038251 TGTAGAGCTTGTGTCGGCTG 60.038 55.000 0.00 0.00 39.05 4.85
4868 6072 0.038159 GTGTAGAGCTTGTGTCGGCT 60.038 55.000 0.00 0.00 41.88 5.52
4869 6073 1.014564 GGTGTAGAGCTTGTGTCGGC 61.015 60.000 0.00 0.00 0.00 5.54
4870 6074 0.732880 CGGTGTAGAGCTTGTGTCGG 60.733 60.000 0.00 0.00 0.00 4.79
4871 6075 0.039437 ACGGTGTAGAGCTTGTGTCG 60.039 55.000 0.00 0.00 0.00 4.35
4872 6076 1.000607 TGACGGTGTAGAGCTTGTGTC 60.001 52.381 0.00 0.00 0.00 3.67
4873 6077 1.000163 CTGACGGTGTAGAGCTTGTGT 60.000 52.381 0.00 0.00 0.00 3.72
4874 6078 1.269723 TCTGACGGTGTAGAGCTTGTG 59.730 52.381 0.00 0.00 0.00 3.33
4875 6079 1.617322 TCTGACGGTGTAGAGCTTGT 58.383 50.000 0.00 0.00 0.00 3.16
4876 6080 2.926200 CAATCTGACGGTGTAGAGCTTG 59.074 50.000 0.00 0.00 0.00 4.01
4877 6081 2.675317 GCAATCTGACGGTGTAGAGCTT 60.675 50.000 0.00 0.00 0.00 3.74
4878 6082 1.134965 GCAATCTGACGGTGTAGAGCT 60.135 52.381 0.00 0.00 0.00 4.09
4879 6083 1.281899 GCAATCTGACGGTGTAGAGC 58.718 55.000 0.00 0.00 0.00 4.09
4880 6084 1.478510 AGGCAATCTGACGGTGTAGAG 59.521 52.381 0.00 0.00 0.00 2.43
4881 6085 1.557099 AGGCAATCTGACGGTGTAGA 58.443 50.000 0.00 0.00 0.00 2.59
4882 6086 2.427453 ACTAGGCAATCTGACGGTGTAG 59.573 50.000 0.00 0.00 0.00 2.74
4883 6087 2.453521 ACTAGGCAATCTGACGGTGTA 58.546 47.619 0.00 0.00 0.00 2.90
4884 6088 1.267121 ACTAGGCAATCTGACGGTGT 58.733 50.000 0.00 0.00 0.00 4.16
4885 6089 3.068165 TGATACTAGGCAATCTGACGGTG 59.932 47.826 0.00 0.00 0.00 4.94
4886 6090 3.296854 TGATACTAGGCAATCTGACGGT 58.703 45.455 0.00 0.00 0.00 4.83
4887 6091 4.322080 TTGATACTAGGCAATCTGACGG 57.678 45.455 0.00 0.00 0.00 4.79
4888 6092 6.851222 AATTTGATACTAGGCAATCTGACG 57.149 37.500 0.00 0.00 0.00 4.35
4889 6093 9.109393 TGTAAATTTGATACTAGGCAATCTGAC 57.891 33.333 0.00 0.00 0.00 3.51
4890 6094 9.679661 TTGTAAATTTGATACTAGGCAATCTGA 57.320 29.630 0.00 0.00 0.00 3.27
4893 6097 9.221775 CGTTTGTAAATTTGATACTAGGCAATC 57.778 33.333 0.00 0.00 0.00 2.67
4894 6098 8.188139 CCGTTTGTAAATTTGATACTAGGCAAT 58.812 33.333 0.00 0.00 0.00 3.56
4895 6099 7.531716 CCGTTTGTAAATTTGATACTAGGCAA 58.468 34.615 0.00 0.00 0.00 4.52
4896 6100 6.403855 GCCGTTTGTAAATTTGATACTAGGCA 60.404 38.462 0.00 0.00 37.45 4.75
4897 6101 5.969435 GCCGTTTGTAAATTTGATACTAGGC 59.031 40.000 0.00 4.47 0.00 3.93
4898 6102 6.317893 AGGCCGTTTGTAAATTTGATACTAGG 59.682 38.462 0.00 0.00 0.00 3.02
4899 6103 7.065324 TCAGGCCGTTTGTAAATTTGATACTAG 59.935 37.037 0.00 0.00 0.00 2.57
4900 6104 6.879993 TCAGGCCGTTTGTAAATTTGATACTA 59.120 34.615 0.00 0.00 0.00 1.82
4901 6105 5.708230 TCAGGCCGTTTGTAAATTTGATACT 59.292 36.000 0.00 0.00 0.00 2.12
4902 6106 5.945155 TCAGGCCGTTTGTAAATTTGATAC 58.055 37.500 0.00 0.00 0.00 2.24
4903 6107 6.405286 CCATCAGGCCGTTTGTAAATTTGATA 60.405 38.462 0.00 0.00 0.00 2.15
4904 6108 5.410067 CATCAGGCCGTTTGTAAATTTGAT 58.590 37.500 0.00 0.00 0.00 2.57
4905 6109 4.321601 CCATCAGGCCGTTTGTAAATTTGA 60.322 41.667 0.00 0.00 0.00 2.69
4906 6110 3.925913 CCATCAGGCCGTTTGTAAATTTG 59.074 43.478 0.00 0.00 0.00 2.32
4907 6111 3.056179 CCCATCAGGCCGTTTGTAAATTT 60.056 43.478 0.00 0.00 0.00 1.82
4908 6112 2.495669 CCCATCAGGCCGTTTGTAAATT 59.504 45.455 0.00 0.00 0.00 1.82
4909 6113 2.099405 CCCATCAGGCCGTTTGTAAAT 58.901 47.619 0.00 0.00 0.00 1.40
4910 6114 1.074084 TCCCATCAGGCCGTTTGTAAA 59.926 47.619 0.00 0.00 34.51 2.01
4911 6115 0.693622 TCCCATCAGGCCGTTTGTAA 59.306 50.000 0.00 0.00 34.51 2.41
4912 6116 0.916086 ATCCCATCAGGCCGTTTGTA 59.084 50.000 0.00 0.00 34.51 2.41
4913 6117 0.916086 TATCCCATCAGGCCGTTTGT 59.084 50.000 0.00 0.00 34.51 2.83
4914 6118 1.308998 GTATCCCATCAGGCCGTTTG 58.691 55.000 0.00 0.00 34.51 2.93
4915 6119 0.916086 TGTATCCCATCAGGCCGTTT 59.084 50.000 0.00 0.00 34.51 3.60
4916 6120 0.180406 GTGTATCCCATCAGGCCGTT 59.820 55.000 0.00 0.00 34.51 4.44
4917 6121 1.696097 GGTGTATCCCATCAGGCCGT 61.696 60.000 0.00 0.00 34.51 5.68
4918 6122 1.071471 GGTGTATCCCATCAGGCCG 59.929 63.158 0.00 0.00 34.51 6.13
4919 6123 1.071471 CGGTGTATCCCATCAGGCC 59.929 63.158 0.00 0.00 34.51 5.19
4920 6124 1.071471 CCGGTGTATCCCATCAGGC 59.929 63.158 0.00 0.00 34.51 4.85
4921 6125 1.071471 GCCGGTGTATCCCATCAGG 59.929 63.158 1.90 0.00 0.00 3.86
4922 6126 0.250038 CAGCCGGTGTATCCCATCAG 60.250 60.000 1.90 0.00 0.00 2.90
4923 6127 0.689412 TCAGCCGGTGTATCCCATCA 60.689 55.000 1.90 0.00 0.00 3.07
4924 6128 0.034059 CTCAGCCGGTGTATCCCATC 59.966 60.000 1.90 0.00 0.00 3.51
4925 6129 0.691078 ACTCAGCCGGTGTATCCCAT 60.691 55.000 1.90 0.00 0.00 4.00
4926 6130 0.032912 TACTCAGCCGGTGTATCCCA 60.033 55.000 1.90 0.00 0.00 4.37
4927 6131 1.272769 GATACTCAGCCGGTGTATCCC 59.727 57.143 19.02 0.00 42.82 3.85
4928 6132 1.068472 CGATACTCAGCCGGTGTATCC 60.068 57.143 21.48 11.71 44.45 2.59
4929 6133 1.607628 ACGATACTCAGCCGGTGTATC 59.392 52.381 19.44 19.44 44.12 2.24
4930 6134 1.607628 GACGATACTCAGCCGGTGTAT 59.392 52.381 1.90 7.25 38.53 2.29
4931 6135 1.019673 GACGATACTCAGCCGGTGTA 58.980 55.000 1.90 2.21 0.00 2.90
4932 6136 0.680280 AGACGATACTCAGCCGGTGT 60.680 55.000 1.90 0.00 0.00 4.16
4933 6137 0.248661 CAGACGATACTCAGCCGGTG 60.249 60.000 1.90 0.00 0.00 4.94
4934 6138 1.384989 CCAGACGATACTCAGCCGGT 61.385 60.000 1.90 0.00 0.00 5.28
4935 6139 1.101635 TCCAGACGATACTCAGCCGG 61.102 60.000 0.00 0.00 0.00 6.13
4936 6140 0.738975 TTCCAGACGATACTCAGCCG 59.261 55.000 0.00 0.00 0.00 5.52
4937 6141 1.202428 GGTTCCAGACGATACTCAGCC 60.202 57.143 0.00 0.00 0.00 4.85
4938 6142 1.534175 CGGTTCCAGACGATACTCAGC 60.534 57.143 0.00 0.00 0.00 4.26
4939 6143 1.743958 ACGGTTCCAGACGATACTCAG 59.256 52.381 0.00 0.00 0.00 3.35
4940 6144 1.741706 GACGGTTCCAGACGATACTCA 59.258 52.381 0.00 0.00 0.00 3.41
4941 6145 1.267932 CGACGGTTCCAGACGATACTC 60.268 57.143 0.00 0.00 0.00 2.59
4942 6146 0.731417 CGACGGTTCCAGACGATACT 59.269 55.000 0.00 0.00 0.00 2.12
4943 6147 0.248377 CCGACGGTTCCAGACGATAC 60.248 60.000 5.48 0.00 0.00 2.24
4944 6148 1.996786 GCCGACGGTTCCAGACGATA 61.997 60.000 16.73 0.00 0.00 2.92
4945 6149 2.882876 CCGACGGTTCCAGACGAT 59.117 61.111 5.48 0.00 0.00 3.73
4946 6150 4.047059 GCCGACGGTTCCAGACGA 62.047 66.667 16.73 0.00 0.00 4.20
4947 6151 4.052229 AGCCGACGGTTCCAGACG 62.052 66.667 16.73 0.00 0.00 4.18
4948 6152 1.870055 TACAGCCGACGGTTCCAGAC 61.870 60.000 16.73 0.00 0.00 3.51
4949 6153 0.968901 ATACAGCCGACGGTTCCAGA 60.969 55.000 16.73 0.00 0.00 3.86
4950 6154 0.742505 TATACAGCCGACGGTTCCAG 59.257 55.000 16.73 0.00 0.00 3.86
4951 6155 0.742505 CTATACAGCCGACGGTTCCA 59.257 55.000 16.73 0.00 0.00 3.53
4952 6156 0.596859 GCTATACAGCCGACGGTTCC 60.597 60.000 16.73 0.00 42.37 3.62
4953 6157 2.882793 GCTATACAGCCGACGGTTC 58.117 57.895 16.73 0.00 42.37 3.62
4963 6167 2.196749 CACTGGAGCGTTGCTATACAG 58.803 52.381 12.94 12.94 39.88 2.74
4964 6168 1.134818 CCACTGGAGCGTTGCTATACA 60.135 52.381 0.00 0.00 39.88 2.29
4965 6169 1.134788 ACCACTGGAGCGTTGCTATAC 60.135 52.381 0.71 0.00 39.88 1.47
4966 6170 1.191535 ACCACTGGAGCGTTGCTATA 58.808 50.000 0.71 0.00 39.88 1.31
4967 6171 1.191535 TACCACTGGAGCGTTGCTAT 58.808 50.000 0.71 0.00 39.88 2.97
4968 6172 0.970640 TTACCACTGGAGCGTTGCTA 59.029 50.000 0.71 0.00 39.88 3.49
4969 6173 0.107831 TTTACCACTGGAGCGTTGCT 59.892 50.000 0.71 0.00 43.88 3.91
4970 6174 0.517316 CTTTACCACTGGAGCGTTGC 59.483 55.000 0.71 0.00 0.00 4.17
4971 6175 0.517316 GCTTTACCACTGGAGCGTTG 59.483 55.000 0.71 0.00 0.00 4.10
4972 6176 0.396811 AGCTTTACCACTGGAGCGTT 59.603 50.000 0.71 0.00 39.99 4.84
4973 6177 0.320771 CAGCTTTACCACTGGAGCGT 60.321 55.000 0.71 0.00 39.99 5.07
4974 6178 1.639298 GCAGCTTTACCACTGGAGCG 61.639 60.000 0.71 0.00 39.99 5.03
4975 6179 0.322008 AGCAGCTTTACCACTGGAGC 60.322 55.000 0.71 0.19 34.38 4.70
4976 6180 1.446907 CAGCAGCTTTACCACTGGAG 58.553 55.000 0.71 0.00 34.38 3.86
4977 6181 0.606401 GCAGCAGCTTTACCACTGGA 60.606 55.000 0.71 0.00 37.91 3.86
4978 6182 1.589716 GGCAGCAGCTTTACCACTGG 61.590 60.000 0.00 0.00 41.70 4.00
4979 6183 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
4980 6184 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
4981 6185 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
4982 6186 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
4983 6187 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
4984 6188 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
4985 6189 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
4986 6190 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
4987 6191 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
4988 6192 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
4989 6193 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
4990 6194 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
4991 6195 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
4992 6196 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
4993 6197 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
4994 6198 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
5005 6209 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
5006 6210 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
5007 6211 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
5008 6212 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
5009 6213 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
5010 6214 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
5011 6215 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
5012 6216 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
5013 6217 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
5014 6218 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
5015 6219 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
5016 6220 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
5017 6221 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
5018 6222 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
5019 6223 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
5020 6224 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
5021 6225 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
5022 6226 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
5023 6227 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
5024 6228 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
5025 6229 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
5026 6230 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
5027 6231 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
5039 6243 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
5040 6244 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
5041 6245 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
5042 6246 4.324254 CCAGCCTTTCCCTACATTTCTGTA 60.324 45.833 0.00 0.00 36.79 2.74
5043 6247 3.562176 CCAGCCTTTCCCTACATTTCTGT 60.562 47.826 0.00 0.00 39.49 3.41
5044 6248 3.019564 CCAGCCTTTCCCTACATTTCTG 58.980 50.000 0.00 0.00 0.00 3.02
5045 6249 2.024941 CCCAGCCTTTCCCTACATTTCT 60.025 50.000 0.00 0.00 0.00 2.52
5046 6250 2.291605 ACCCAGCCTTTCCCTACATTTC 60.292 50.000 0.00 0.00 0.00 2.17
5047 6251 1.716503 ACCCAGCCTTTCCCTACATTT 59.283 47.619 0.00 0.00 0.00 2.32
5048 6252 1.382914 ACCCAGCCTTTCCCTACATT 58.617 50.000 0.00 0.00 0.00 2.71
5049 6253 1.844497 GTACCCAGCCTTTCCCTACAT 59.156 52.381 0.00 0.00 0.00 2.29
5050 6254 1.203389 AGTACCCAGCCTTTCCCTACA 60.203 52.381 0.00 0.00 0.00 2.74
5051 6255 1.581223 AGTACCCAGCCTTTCCCTAC 58.419 55.000 0.00 0.00 0.00 3.18
5052 6256 3.719368 ATAGTACCCAGCCTTTCCCTA 57.281 47.619 0.00 0.00 0.00 3.53
5053 6257 2.588925 ATAGTACCCAGCCTTTCCCT 57.411 50.000 0.00 0.00 0.00 4.20
5054 6258 3.324268 GTCTATAGTACCCAGCCTTTCCC 59.676 52.174 0.00 0.00 0.00 3.97
5055 6259 3.324268 GGTCTATAGTACCCAGCCTTTCC 59.676 52.174 0.00 0.00 0.00 3.13
5056 6260 4.603989 GGTCTATAGTACCCAGCCTTTC 57.396 50.000 0.00 0.00 0.00 2.62
5075 6279 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
5076 6280 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
5077 6281 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
5078 6282 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
5079 6283 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
5080 6284 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
5081 6285 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
5082 6286 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
5089 6293 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
5105 6309 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
5108 6312 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
5109 6313 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
5110 6314 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
5111 6315 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
5117 6321 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
5118 6322 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
5119 6323 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
5120 6324 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
5121 6325 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
5131 6335 1.819288 GTTCTAAGAAAAGGGCAGCCC 59.181 52.381 24.90 24.90 45.90 5.19
5132 6336 2.796557 AGTTCTAAGAAAAGGGCAGCC 58.203 47.619 1.26 1.26 0.00 4.85
5133 6337 5.959618 TTTAGTTCTAAGAAAAGGGCAGC 57.040 39.130 0.00 0.00 0.00 5.25
5134 6338 9.010029 TGTATTTTAGTTCTAAGAAAAGGGCAG 57.990 33.333 0.00 0.00 0.00 4.85
5135 6339 8.927675 TGTATTTTAGTTCTAAGAAAAGGGCA 57.072 30.769 0.00 0.00 0.00 5.36
5136 6340 9.788960 CATGTATTTTAGTTCTAAGAAAAGGGC 57.211 33.333 0.00 0.00 0.00 5.19
5172 6376 9.300681 ACTTGTCATCAAAATGGATAAAAGAGA 57.699 29.630 0.00 0.00 33.42 3.10
5180 6384 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
5181 6385 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
5182 6386 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
5183 6387 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
5184 6388 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
5185 6389 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
5186 6390 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
5187 6391 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
5188 6392 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
5189 6393 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
5190 6394 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
5191 6395 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
5192 6396 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
5193 6397 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
5194 6398 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
5195 6399 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
5196 6400 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
5197 6401 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
5198 6402 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
5199 6403 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
5200 6404 1.479323 CATACTCCCTCCGTCCGAAAA 59.521 52.381 0.00 0.00 0.00 2.29
5201 6405 1.108776 CATACTCCCTCCGTCCGAAA 58.891 55.000 0.00 0.00 0.00 3.46
5202 6406 0.033796 ACATACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
5203 6407 0.033796 AACATACTCCCTCCGTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
5204 6408 0.384669 GAACATACTCCCTCCGTCCG 59.615 60.000 0.00 0.00 0.00 4.79
5205 6409 0.751452 GGAACATACTCCCTCCGTCC 59.249 60.000 0.00 0.00 0.00 4.79
5206 6410 1.777941 AGGAACATACTCCCTCCGTC 58.222 55.000 0.00 0.00 35.95 4.79
5207 6411 2.249309 AAGGAACATACTCCCTCCGT 57.751 50.000 0.00 0.00 35.95 4.69
5208 6412 3.705072 AGTAAAGGAACATACTCCCTCCG 59.295 47.826 0.00 0.00 35.95 4.63
5209 6413 5.898397 AGTAGTAAAGGAACATACTCCCTCC 59.102 44.000 0.00 0.00 35.44 4.30
5210 6414 7.417683 GGAAGTAGTAAAGGAACATACTCCCTC 60.418 44.444 0.00 0.00 35.44 4.30
5211 6415 6.383436 GGAAGTAGTAAAGGAACATACTCCCT 59.617 42.308 0.00 0.00 35.44 4.20
5212 6416 6.407865 GGGAAGTAGTAAAGGAACATACTCCC 60.408 46.154 0.00 0.00 35.44 4.30
5213 6417 6.580788 GGGAAGTAGTAAAGGAACATACTCC 58.419 44.000 0.00 0.00 35.44 3.85
5214 6418 6.127507 ACGGGAAGTAGTAAAGGAACATACTC 60.128 42.308 0.00 0.00 35.44 2.59
5215 6419 5.718607 ACGGGAAGTAGTAAAGGAACATACT 59.281 40.000 0.00 0.00 37.14 2.12
5216 6420 5.970592 ACGGGAAGTAGTAAAGGAACATAC 58.029 41.667 0.00 0.00 0.00 2.39
5217 6421 6.610075 AACGGGAAGTAGTAAAGGAACATA 57.390 37.500 0.00 0.00 0.00 2.29
5218 6422 5.494390 AACGGGAAGTAGTAAAGGAACAT 57.506 39.130 0.00 0.00 0.00 2.71
5478 6682 2.159476 TCCGTTACCTCGATTTCTGTCG 60.159 50.000 0.00 0.00 42.74 4.35
5523 6727 5.313506 AGGAAGGTAAAACCAGAATTCTCCT 59.686 40.000 4.57 4.37 41.95 3.69
5536 6740 6.548251 CCTTTCTTTGGTGTAGGAAGGTAAAA 59.452 38.462 0.00 0.00 41.61 1.52
5764 6972 8.537728 TGCAATATAAATTTGATCTCCCAACT 57.462 30.769 0.00 0.00 0.00 3.16
5857 7067 2.691409 TCCAGACGCTAAAAGGATGG 57.309 50.000 0.00 0.00 0.00 3.51
5961 7171 7.279750 TCTAAATTCAGGGTACACCAAAAAC 57.720 36.000 0.00 0.00 43.89 2.43
5991 7201 7.117241 TGATTCTGATGTAAAAACAGACGAC 57.883 36.000 0.00 0.00 39.80 4.34
6038 7248 4.742201 GACGCTCGGCCTCTGCAA 62.742 66.667 0.00 0.00 40.13 4.08
6041 7251 4.504916 CCTGACGCTCGGCCTCTG 62.505 72.222 0.00 0.00 0.00 3.35
6042 7252 3.640257 TACCTGACGCTCGGCCTCT 62.640 63.158 0.00 0.00 0.00 3.69
6043 7253 3.127352 CTACCTGACGCTCGGCCTC 62.127 68.421 0.00 0.00 0.00 4.70
6044 7254 3.141488 CTACCTGACGCTCGGCCT 61.141 66.667 0.00 0.00 0.00 5.19
6045 7255 4.874977 GCTACCTGACGCTCGGCC 62.875 72.222 0.00 0.00 0.00 6.13
6046 7256 3.759766 GAGCTACCTGACGCTCGGC 62.760 68.421 0.00 0.00 42.62 5.54
6047 7257 2.409651 GAGCTACCTGACGCTCGG 59.590 66.667 0.00 0.00 42.62 4.63
6049 7259 1.094073 TACCGAGCTACCTGACGCTC 61.094 60.000 0.00 0.00 46.91 5.03
6050 7260 0.465824 ATACCGAGCTACCTGACGCT 60.466 55.000 0.00 0.00 39.61 5.07
6051 7261 0.040246 GATACCGAGCTACCTGACGC 60.040 60.000 0.00 0.00 0.00 5.19
6052 7262 0.592148 GGATACCGAGCTACCTGACG 59.408 60.000 0.00 0.00 0.00 4.35
6072 7282 1.000274 CAAAGCCTTTTCCCACGAAGG 60.000 52.381 0.00 0.00 44.21 3.46
6073 7283 1.602920 GCAAAGCCTTTTCCCACGAAG 60.603 52.381 0.00 0.00 0.00 3.79
6074 7284 0.387565 GCAAAGCCTTTTCCCACGAA 59.612 50.000 0.00 0.00 0.00 3.85
6075 7285 1.791103 CGCAAAGCCTTTTCCCACGA 61.791 55.000 0.00 0.00 0.00 4.35
6076 7286 1.371635 CGCAAAGCCTTTTCCCACG 60.372 57.895 0.00 0.00 0.00 4.94
6077 7287 0.603065 ATCGCAAAGCCTTTTCCCAC 59.397 50.000 0.00 0.00 0.00 4.61
6078 7288 1.272212 GAATCGCAAAGCCTTTTCCCA 59.728 47.619 0.00 0.00 0.00 4.37
6079 7289 1.272212 TGAATCGCAAAGCCTTTTCCC 59.728 47.619 0.00 0.00 0.00 3.97
6080 7290 2.723124 TGAATCGCAAAGCCTTTTCC 57.277 45.000 0.00 0.00 0.00 3.13
6081 7291 3.614176 GGAATGAATCGCAAAGCCTTTTC 59.386 43.478 0.00 0.00 0.00 2.29
6082 7292 3.259123 AGGAATGAATCGCAAAGCCTTTT 59.741 39.130 0.00 0.00 0.00 2.27
6083 7293 2.827921 AGGAATGAATCGCAAAGCCTTT 59.172 40.909 0.00 0.00 0.00 3.11
6084 7294 2.165030 CAGGAATGAATCGCAAAGCCTT 59.835 45.455 0.00 0.00 0.00 4.35
6085 7295 1.747355 CAGGAATGAATCGCAAAGCCT 59.253 47.619 0.00 0.00 0.00 4.58
6086 7296 1.474077 ACAGGAATGAATCGCAAAGCC 59.526 47.619 0.00 0.00 0.00 4.35
6087 7297 2.162208 TGACAGGAATGAATCGCAAAGC 59.838 45.455 0.00 0.00 0.00 3.51
6088 7298 4.627611 ATGACAGGAATGAATCGCAAAG 57.372 40.909 0.00 0.00 0.00 2.77
6089 7299 4.035558 GCTATGACAGGAATGAATCGCAAA 59.964 41.667 0.00 0.00 0.00 3.68
6090 7300 3.561310 GCTATGACAGGAATGAATCGCAA 59.439 43.478 0.00 0.00 0.00 4.85
6091 7301 3.133691 GCTATGACAGGAATGAATCGCA 58.866 45.455 0.00 0.00 0.00 5.10
6092 7302 3.059325 GTGCTATGACAGGAATGAATCGC 60.059 47.826 0.00 0.00 0.00 4.58
6093 7303 4.375272 AGTGCTATGACAGGAATGAATCG 58.625 43.478 0.00 0.00 0.00 3.34
6094 7304 6.054295 AGAAGTGCTATGACAGGAATGAATC 58.946 40.000 0.00 0.00 0.00 2.52
6095 7305 5.999044 AGAAGTGCTATGACAGGAATGAAT 58.001 37.500 0.00 0.00 0.00 2.57
6096 7306 5.426689 AGAAGTGCTATGACAGGAATGAA 57.573 39.130 0.00 0.00 0.00 2.57
6097 7307 5.452496 GCTAGAAGTGCTATGACAGGAATGA 60.452 44.000 0.00 0.00 0.00 2.57
6098 7308 4.749099 GCTAGAAGTGCTATGACAGGAATG 59.251 45.833 0.00 0.00 0.00 2.67
6099 7309 4.406972 TGCTAGAAGTGCTATGACAGGAAT 59.593 41.667 0.00 0.00 0.00 3.01
6100 7310 3.769300 TGCTAGAAGTGCTATGACAGGAA 59.231 43.478 0.00 0.00 0.00 3.36
6101 7311 3.365472 TGCTAGAAGTGCTATGACAGGA 58.635 45.455 0.00 0.00 0.00 3.86
6102 7312 3.382865 TCTGCTAGAAGTGCTATGACAGG 59.617 47.826 0.00 0.00 0.00 4.00
6103 7313 4.358851 GTCTGCTAGAAGTGCTATGACAG 58.641 47.826 0.00 0.00 0.00 3.51
6104 7314 3.131223 GGTCTGCTAGAAGTGCTATGACA 59.869 47.826 0.00 0.00 32.44 3.58
6105 7315 3.491792 GGGTCTGCTAGAAGTGCTATGAC 60.492 52.174 0.00 0.00 0.00 3.06
6106 7316 2.695666 GGGTCTGCTAGAAGTGCTATGA 59.304 50.000 0.00 0.00 0.00 2.15
6107 7317 2.224161 GGGGTCTGCTAGAAGTGCTATG 60.224 54.545 0.00 0.00 0.00 2.23
6108 7318 2.043227 GGGGTCTGCTAGAAGTGCTAT 58.957 52.381 0.00 0.00 0.00 2.97
6109 7319 1.486211 GGGGTCTGCTAGAAGTGCTA 58.514 55.000 0.00 0.00 0.00 3.49
6110 7320 1.608717 CGGGGTCTGCTAGAAGTGCT 61.609 60.000 0.00 0.00 0.00 4.40
6111 7321 1.153549 CGGGGTCTGCTAGAAGTGC 60.154 63.158 0.00 0.00 0.00 4.40
6112 7322 0.173708 GACGGGGTCTGCTAGAAGTG 59.826 60.000 0.00 0.00 0.00 3.16
6113 7323 0.971447 GGACGGGGTCTGCTAGAAGT 60.971 60.000 0.00 0.00 32.47 3.01
6114 7324 1.677637 GGGACGGGGTCTGCTAGAAG 61.678 65.000 0.00 0.00 32.47 2.85
6115 7325 1.684734 GGGACGGGGTCTGCTAGAA 60.685 63.158 0.00 0.00 32.47 2.10
6116 7326 2.043248 GGGACGGGGTCTGCTAGA 60.043 66.667 0.00 0.00 32.47 2.43
6117 7327 2.042843 AGGGACGGGGTCTGCTAG 60.043 66.667 0.00 0.00 32.47 3.42
6118 7328 2.043248 GAGGGACGGGGTCTGCTA 60.043 66.667 0.00 0.00 32.47 3.49
6121 7331 1.823169 TTTTCGAGGGACGGGGTCTG 61.823 60.000 0.00 0.00 42.82 3.51
6122 7332 1.123246 TTTTTCGAGGGACGGGGTCT 61.123 55.000 0.00 0.00 42.82 3.85
6123 7333 1.372307 TTTTTCGAGGGACGGGGTC 59.628 57.895 0.00 0.00 42.82 4.46
6124 7334 3.566041 TTTTTCGAGGGACGGGGT 58.434 55.556 0.00 0.00 42.82 4.95
6142 7352 2.235650 GCGGGGTCTACTAGAGGTTTTT 59.764 50.000 0.00 0.00 0.00 1.94
6143 7353 1.829849 GCGGGGTCTACTAGAGGTTTT 59.170 52.381 0.00 0.00 0.00 2.43
6144 7354 1.272872 TGCGGGGTCTACTAGAGGTTT 60.273 52.381 0.00 0.00 0.00 3.27
6145 7355 0.333993 TGCGGGGTCTACTAGAGGTT 59.666 55.000 0.00 0.00 0.00 3.50
6146 7356 0.333993 TTGCGGGGTCTACTAGAGGT 59.666 55.000 0.00 0.00 0.00 3.85
6147 7357 1.481871 TTTGCGGGGTCTACTAGAGG 58.518 55.000 0.00 0.00 0.00 3.69
6182 7392 2.626151 CGTGAAACTGCAAACGCGC 61.626 57.895 5.73 0.00 31.75 6.86
6204 7414 0.658897 TTTCGACCCGCAAACAAGAC 59.341 50.000 0.00 0.00 0.00 3.01
6322 7573 2.643551 ACTAGTGTTTGCAGTGCTTGT 58.356 42.857 17.60 0.00 0.00 3.16
6616 7902 1.443702 CTTCATCGCGACGTGGACA 60.444 57.895 12.93 0.00 0.00 4.02
6712 8003 1.343465 GTGAAGAGGAAGTGGTCGGAA 59.657 52.381 0.00 0.00 0.00 4.30
6861 8187 4.699522 GACCAACCGCGGCCTCTT 62.700 66.667 28.58 9.39 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.