Multiple sequence alignment - TraesCS3B01G256000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G256000 chr3B 100.000 4018 0 0 1 4018 413416660 413420677 0.000000e+00 7420.0
1 TraesCS3B01G256000 chr3B 89.922 129 11 2 2424 2551 435959560 435959433 8.930000e-37 165.0
2 TraesCS3B01G256000 chr3B 95.789 95 4 0 3923 4017 243784042 243784136 1.930000e-33 154.0
3 TraesCS3B01G256000 chr3B 93.269 104 6 1 3915 4017 524326121 524326224 6.960000e-33 152.0
4 TraesCS3B01G256000 chr3B 87.692 65 6 2 107 169 341296130 341296066 1.550000e-09 75.0
5 TraesCS3B01G256000 chr3D 94.939 3774 110 29 1 3722 308060312 308056568 0.000000e+00 5836.0
6 TraesCS3B01G256000 chr3D 94.074 135 7 1 3714 3848 67064915 67064782 1.890000e-48 204.0
7 TraesCS3B01G256000 chr3D 89.844 128 13 0 2424 2551 337974607 337974480 8.930000e-37 165.0
8 TraesCS3B01G256000 chr3D 89.062 64 6 1 100 162 560476169 560476106 1.200000e-10 78.7
9 TraesCS3B01G256000 chr3A 94.846 3434 98 35 315 3697 427335393 427331988 0.000000e+00 5288.0
10 TraesCS3B01G256000 chr3A 88.485 330 32 2 1 326 427335849 427335522 1.050000e-105 394.0
11 TraesCS3B01G256000 chr3A 90.625 128 12 0 2424 2551 455803790 455803663 1.920000e-38 171.0
12 TraesCS3B01G256000 chr3A 95.402 87 4 0 3844 3930 427331807 427331721 5.410000e-29 139.0
13 TraesCS3B01G256000 chr7B 96.875 128 4 0 3720 3847 692921829 692921956 8.750000e-52 215.0
14 TraesCS3B01G256000 chr7B 96.124 129 5 0 3718 3846 638489304 638489176 1.130000e-50 211.0
15 TraesCS3B01G256000 chr7B 91.275 149 9 3 3719 3866 89765778 89765923 2.450000e-47 200.0
16 TraesCS3B01G256000 chr7B 95.098 102 4 1 3917 4017 424980085 424979984 4.160000e-35 159.0
17 TraesCS3B01G256000 chr1B 93.525 139 9 0 3718 3856 231617096 231617234 1.460000e-49 207.0
18 TraesCS3B01G256000 chr1B 93.431 137 8 1 3718 3853 102627726 102627862 6.810000e-48 202.0
19 TraesCS3B01G256000 chr1B 78.462 325 52 15 2425 2743 654716328 654716640 3.170000e-46 196.0
20 TraesCS3B01G256000 chr1B 96.842 95 3 0 3923 4017 543806106 543806012 4.160000e-35 159.0
21 TraesCS3B01G256000 chr1B 96.739 92 3 0 3926 4017 125325468 125325559 1.930000e-33 154.0
22 TraesCS3B01G256000 chr1B 96.000 50 1 1 106 154 493871922 493871873 3.330000e-11 80.5
23 TraesCS3B01G256000 chr4A 93.382 136 9 0 3718 3853 477881755 477881890 6.810000e-48 202.0
24 TraesCS3B01G256000 chr2B 93.382 136 9 0 3714 3849 789946958 789947093 6.810000e-48 202.0
25 TraesCS3B01G256000 chr5D 92.806 139 9 1 3719 3856 361358582 361358720 2.450000e-47 200.0
26 TraesCS3B01G256000 chr5D 90.164 61 4 2 100 159 408787885 408787944 1.200000e-10 78.7
27 TraesCS3B01G256000 chr5D 91.071 56 3 2 107 161 324411884 324411830 1.550000e-09 75.0
28 TraesCS3B01G256000 chr5D 89.655 58 4 2 106 161 422423736 422423679 5.570000e-09 73.1
29 TraesCS3B01G256000 chr5D 92.157 51 3 1 106 155 436580050 436580100 2.000000e-08 71.3
30 TraesCS3B01G256000 chr5B 96.809 94 3 0 3925 4018 710744566 710744473 1.490000e-34 158.0
31 TraesCS3B01G256000 chr5B 96.739 92 3 0 3926 4017 474318506 474318415 1.930000e-33 154.0
32 TraesCS3B01G256000 chr5B 91.228 57 4 1 106 161 509175601 509175545 4.310000e-10 76.8
33 TraesCS3B01G256000 chrUn 95.833 96 4 0 3923 4018 359421149 359421244 5.380000e-34 156.0
34 TraesCS3B01G256000 chrUn 97.674 43 1 0 106 148 376482448 376482490 1.550000e-09 75.0
35 TraesCS3B01G256000 chr4B 95.789 95 4 0 3923 4017 197794775 197794681 1.930000e-33 154.0
36 TraesCS3B01G256000 chr1A 87.302 126 16 0 2425 2550 565293976 565294101 1.160000e-30 145.0
37 TraesCS3B01G256000 chr1A 97.872 47 0 1 103 148 13348875 13348829 3.330000e-11 80.5
38 TraesCS3B01G256000 chr1A 97.872 47 0 1 103 148 13571079 13571033 3.330000e-11 80.5
39 TraesCS3B01G256000 chr1D 84.127 126 20 0 2425 2550 471001676 471001801 5.450000e-24 122.0
40 TraesCS3B01G256000 chr1D 83.721 129 21 0 2612 2740 481365824 481365696 5.450000e-24 122.0
41 TraesCS3B01G256000 chr1D 90.741 54 4 1 103 155 21448365 21448312 2.000000e-08 71.3
42 TraesCS3B01G256000 chr1D 92.000 50 3 1 106 154 253346897 253346848 7.210000e-08 69.4
43 TraesCS3B01G256000 chr1D 93.023 43 3 0 106 148 204855515 204855557 3.350000e-06 63.9
44 TraesCS3B01G256000 chr1D 92.857 42 3 0 107 148 37884688 37884647 1.210000e-05 62.1
45 TraesCS3B01G256000 chr1D 89.796 49 3 2 100 147 420081858 420081905 1.210000e-05 62.1
46 TraesCS3B01G256000 chr1D 92.308 39 3 0 107 145 114067147 114067185 5.610000e-04 56.5
47 TraesCS3B01G256000 chr2A 83.186 113 18 1 152 264 670839565 670839454 7.100000e-18 102.0
48 TraesCS3B01G256000 chr6D 94.444 54 2 1 103 155 9346237 9346290 9.260000e-12 82.4
49 TraesCS3B01G256000 chr6D 96.000 50 2 0 102 151 93529466 93529417 9.260000e-12 82.4
50 TraesCS3B01G256000 chr6D 97.561 41 1 0 106 146 461318140 461318100 2.000000e-08 71.3
51 TraesCS3B01G256000 chr6D 89.796 49 5 0 100 148 327364403 327364451 3.350000e-06 63.9
52 TraesCS3B01G256000 chr7A 91.379 58 2 3 106 160 513221085 513221028 4.310000e-10 76.8
53 TraesCS3B01G256000 chr2D 94.000 50 1 1 106 153 459300599 459300550 1.550000e-09 75.0
54 TraesCS3B01G256000 chr2D 89.655 58 5 1 94 150 531045170 531045113 5.570000e-09 73.1
55 TraesCS3B01G256000 chr6A 92.157 51 3 1 104 153 609594925 609594975 2.000000e-08 71.3
56 TraesCS3B01G256000 chr7D 88.136 59 6 1 100 157 566230998 566231056 7.210000e-08 69.4
57 TraesCS3B01G256000 chr4D 95.238 42 2 0 107 148 358476894 358476935 2.590000e-07 67.6
58 TraesCS3B01G256000 chr4D 93.478 46 1 2 106 150 500440075 500440031 2.590000e-07 67.6
59 TraesCS3B01G256000 chr4D 89.796 49 5 0 100 148 450203743 450203791 3.350000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G256000 chr3B 413416660 413420677 4017 False 7420.000000 7420 100.000 1 4018 1 chr3B.!!$F2 4017
1 TraesCS3B01G256000 chr3D 308056568 308060312 3744 True 5836.000000 5836 94.939 1 3722 1 chr3D.!!$R2 3721
2 TraesCS3B01G256000 chr3A 427331721 427335849 4128 True 1940.333333 5288 92.911 1 3930 3 chr3A.!!$R2 3929

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
962 1123 1.254284 CCTCACTTCCACGCCTCTCT 61.254 60.0 0.00 0.0 0.00 3.10 F
1205 1366 0.098200 CCGTACTCGAGCATCACGAA 59.902 55.0 22.96 0.0 39.23 3.85 F
2919 3127 0.037877 GCCTCCCCATCATCATCCAG 59.962 60.0 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2195 2389 1.031571 ACGGTGCAGCCCATGTTATG 61.032 55.000 10.9 0.0 0.00 1.90 R
2987 3195 1.078347 GGGCATTGTGGAAGGGGAA 59.922 57.895 0.0 0.0 0.00 3.97 R
3817 4191 0.533491 CCGTCCGGGAATACTTGTCA 59.467 55.000 0.0 0.0 38.47 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 55 6.807419 CGTATGTACGTACTATACTTTCGC 57.193 41.667 27.00 13.35 44.13 4.70
52 57 4.195744 TGTACGTACTATACTTTCGCCG 57.804 45.455 25.12 0.00 0.00 6.46
67 72 1.764134 TCGCCGGGGTTTATTAGTCAT 59.236 47.619 19.13 0.00 0.00 3.06
69 74 3.006110 TCGCCGGGGTTTATTAGTCATAG 59.994 47.826 19.13 0.00 0.00 2.23
260 265 8.458573 TTTGCTACTCAAATCTAAGGTCAAAA 57.541 30.769 0.00 0.00 39.58 2.44
460 607 3.492011 GTCAAAATTCTTGGCTGCAACAG 59.508 43.478 0.50 0.00 34.12 3.16
484 631 1.944024 CTAGACCGTAGAGGACTGCAG 59.056 57.143 13.48 13.48 44.51 4.41
569 716 3.726782 CGCGGGATTTAAGCACACTAAAC 60.727 47.826 0.00 0.00 0.00 2.01
728 875 7.540055 GCAAACAGAATCTTAAACAAGGAGATG 59.460 37.037 0.00 0.00 0.00 2.90
784 945 6.782150 TCTACACATCACACTAGAATACGTG 58.218 40.000 0.00 0.00 37.18 4.49
788 949 5.971792 CACATCACACTAGAATACGTGGTAG 59.028 44.000 0.00 0.00 35.51 3.18
854 1015 7.687941 ATTCCATTCAACAAAAGTCGTATCT 57.312 32.000 0.00 0.00 0.00 1.98
871 1032 3.498774 ATCTTTGCGCCTATCATCCTT 57.501 42.857 4.18 0.00 0.00 3.36
962 1123 1.254284 CCTCACTTCCACGCCTCTCT 61.254 60.000 0.00 0.00 0.00 3.10
1205 1366 0.098200 CCGTACTCGAGCATCACGAA 59.902 55.000 22.96 0.00 39.23 3.85
1223 1384 1.351350 GAACTACCTGCAGGGGTTCTT 59.649 52.381 38.10 24.56 42.76 2.52
1224 1385 0.693049 ACTACCTGCAGGGGTTCTTG 59.307 55.000 35.42 17.57 40.48 3.02
1225 1386 0.693049 CTACCTGCAGGGGTTCTTGT 59.307 55.000 35.42 15.23 40.48 3.16
1234 1395 1.602605 GGGTTCTTGTTGGACCCCG 60.603 63.158 0.65 0.00 34.65 5.73
1505 1666 2.450609 TCCAAGACAGCGTAGGTTTC 57.549 50.000 0.00 0.00 33.74 2.78
1506 1667 1.068474 CCAAGACAGCGTAGGTTTCG 58.932 55.000 0.00 0.00 39.94 3.46
1538 1699 2.289819 TGCTGATCTGCTGTGTGAATCA 60.290 45.455 23.02 0.00 0.00 2.57
1626 1788 6.658188 AGATCTGGTCCTACTATTGCTTAC 57.342 41.667 0.00 0.00 0.00 2.34
1661 1823 0.179004 TTCGTTCTGCCCCATTGTGT 60.179 50.000 0.00 0.00 0.00 3.72
1679 1841 5.940192 TGTGTTTGTGCCTTGTCTATTAG 57.060 39.130 0.00 0.00 0.00 1.73
1707 1869 3.126343 GTGAACATTAGGGTTTGCTACGG 59.874 47.826 0.00 0.00 0.00 4.02
1770 1932 1.685820 GTTAGCCCCCAAGCTGACT 59.314 57.895 1.62 0.00 43.86 3.41
1947 2109 8.372459 TCAAACTTTGACCAAGTAGATAGCTTA 58.628 33.333 0.00 0.00 45.77 3.09
2070 2233 7.716799 TCCTAAATTTTGCATTACATCAGGT 57.283 32.000 0.00 0.00 0.00 4.00
2095 2258 6.047231 TGATCTTGTCATGACATGTGATCTC 58.953 40.000 35.02 25.50 41.52 2.75
2097 2260 5.416947 TCTTGTCATGACATGTGATCTCTG 58.583 41.667 30.17 12.84 41.52 3.35
2098 2261 4.813750 TGTCATGACATGTGATCTCTGT 57.186 40.909 24.56 0.00 36.21 3.41
2099 2262 5.920193 TGTCATGACATGTGATCTCTGTA 57.080 39.130 24.56 0.00 36.21 2.74
2153 2343 8.466617 ACTTACTACACTCCCTATCTGTTATG 57.533 38.462 0.00 0.00 0.00 1.90
2154 2344 7.506261 ACTTACTACACTCCCTATCTGTTATGG 59.494 40.741 0.00 0.00 0.00 2.74
2155 2345 6.027025 ACTACACTCCCTATCTGTTATGGA 57.973 41.667 0.00 0.00 0.00 3.41
2189 2383 0.969149 ACACTGATCACTCTCGGCAA 59.031 50.000 0.00 0.00 0.00 4.52
2195 2389 3.585862 TGATCACTCTCGGCAAAACTAC 58.414 45.455 0.00 0.00 0.00 2.73
2230 2429 5.056480 TGCACCGTTCCATGAAATATCTAG 58.944 41.667 0.00 0.00 0.00 2.43
2274 2474 4.828829 AGTACTTCCGGAAAATCACGATT 58.171 39.130 19.39 0.00 0.00 3.34
2296 2500 5.357742 TGATTGATTGACCTAGCTAAGCA 57.642 39.130 0.00 0.00 0.00 3.91
2301 2505 1.275666 TGACCTAGCTAAGCAAGGCA 58.724 50.000 0.00 0.00 0.00 4.75
2305 2509 1.208052 CCTAGCTAAGCAAGGCACTGA 59.792 52.381 0.00 0.00 40.86 3.41
2325 2529 1.059098 TGGATCAGTGCCTGTTCTGT 58.941 50.000 0.00 0.00 32.60 3.41
2326 2530 1.421268 TGGATCAGTGCCTGTTCTGTT 59.579 47.619 0.00 0.00 32.60 3.16
2327 2531 2.158623 TGGATCAGTGCCTGTTCTGTTT 60.159 45.455 0.00 0.00 32.60 2.83
2328 2532 2.485814 GGATCAGTGCCTGTTCTGTTTC 59.514 50.000 0.00 0.00 32.60 2.78
2329 2533 3.406764 GATCAGTGCCTGTTCTGTTTCT 58.593 45.455 2.68 0.00 33.89 2.52
2330 2534 4.563580 GGATCAGTGCCTGTTCTGTTTCTA 60.564 45.833 0.00 0.00 32.60 2.10
2331 2535 3.995199 TCAGTGCCTGTTCTGTTTCTAG 58.005 45.455 2.68 0.00 33.89 2.43
2332 2536 2.481952 CAGTGCCTGTTCTGTTTCTAGC 59.518 50.000 0.00 0.00 0.00 3.42
2333 2537 1.807142 GTGCCTGTTCTGTTTCTAGCC 59.193 52.381 0.00 0.00 0.00 3.93
2334 2538 1.699634 TGCCTGTTCTGTTTCTAGCCT 59.300 47.619 0.00 0.00 0.00 4.58
2335 2539 2.079925 GCCTGTTCTGTTTCTAGCCTG 58.920 52.381 0.00 0.00 0.00 4.85
2336 2540 2.551071 GCCTGTTCTGTTTCTAGCCTGT 60.551 50.000 0.00 0.00 0.00 4.00
2337 2541 3.744660 CCTGTTCTGTTTCTAGCCTGTT 58.255 45.455 0.00 0.00 0.00 3.16
2338 2542 4.802918 GCCTGTTCTGTTTCTAGCCTGTTA 60.803 45.833 0.00 0.00 0.00 2.41
2339 2543 5.305585 CCTGTTCTGTTTCTAGCCTGTTAA 58.694 41.667 0.00 0.00 0.00 2.01
2340 2544 5.179555 CCTGTTCTGTTTCTAGCCTGTTAAC 59.820 44.000 0.00 0.00 0.00 2.01
2374 2578 6.820470 TTTTTGTTTTGCGATGAACCTAAG 57.180 33.333 0.00 0.00 0.00 2.18
2380 2584 6.428465 TGTTTTGCGATGAACCTAAGTGATTA 59.572 34.615 0.00 0.00 0.00 1.75
2665 2873 3.345808 GTGCGGCGTGAAGAAGCA 61.346 61.111 9.37 0.00 35.27 3.91
2919 3127 0.037877 GCCTCCCCATCATCATCCAG 59.962 60.000 0.00 0.00 0.00 3.86
2987 3195 0.673644 ACGCGCTATTGCAAGACCTT 60.674 50.000 5.73 0.00 39.64 3.50
3036 3244 6.342111 CCCTGACTAATTAACTCCTTCAGAC 58.658 44.000 0.00 0.00 32.42 3.51
3369 3580 2.032924 TCGAGTGCATATGTGTACCTCG 59.967 50.000 18.20 18.20 41.28 4.63
3372 3583 3.782046 AGTGCATATGTGTACCTCGTTC 58.218 45.455 7.05 0.00 41.28 3.95
3454 3665 3.123804 TCTCAACTTCTGCTTGTTCGTC 58.876 45.455 0.00 0.00 0.00 4.20
3469 3680 6.303970 GCTTGTTCGTCGAACGCTTATATATA 59.696 38.462 27.79 8.21 44.55 0.86
3584 3795 2.791383 TTGATTGCTTTGGACGTTGG 57.209 45.000 0.00 0.00 0.00 3.77
3722 4096 5.221762 TGTCCTATCTCAGCTCTACCTACTC 60.222 48.000 0.00 0.00 0.00 2.59
3723 4097 4.287585 TCCTATCTCAGCTCTACCTACTCC 59.712 50.000 0.00 0.00 0.00 3.85
3724 4098 3.518992 ATCTCAGCTCTACCTACTCCC 57.481 52.381 0.00 0.00 0.00 4.30
3725 4099 2.494158 TCTCAGCTCTACCTACTCCCT 58.506 52.381 0.00 0.00 0.00 4.20
3726 4100 2.440253 TCTCAGCTCTACCTACTCCCTC 59.560 54.545 0.00 0.00 0.00 4.30
3727 4101 1.495574 TCAGCTCTACCTACTCCCTCC 59.504 57.143 0.00 0.00 0.00 4.30
3728 4102 0.475044 AGCTCTACCTACTCCCTCCG 59.525 60.000 0.00 0.00 0.00 4.63
3729 4103 0.183252 GCTCTACCTACTCCCTCCGT 59.817 60.000 0.00 0.00 0.00 4.69
3730 4104 1.815021 GCTCTACCTACTCCCTCCGTC 60.815 61.905 0.00 0.00 0.00 4.79
3731 4105 0.842635 TCTACCTACTCCCTCCGTCC 59.157 60.000 0.00 0.00 0.00 4.79
3732 4106 0.534652 CTACCTACTCCCTCCGTCCG 60.535 65.000 0.00 0.00 0.00 4.79
3733 4107 0.982852 TACCTACTCCCTCCGTCCGA 60.983 60.000 0.00 0.00 0.00 4.55
3734 4108 1.077212 CCTACTCCCTCCGTCCGAA 60.077 63.158 0.00 0.00 0.00 4.30
3735 4109 0.682209 CCTACTCCCTCCGTCCGAAA 60.682 60.000 0.00 0.00 0.00 3.46
3736 4110 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
3737 4111 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
3738 4112 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3739 4113 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
3740 4114 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
3741 4115 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
3742 4116 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3743 4117 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3744 4118 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3745 4119 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
3746 4120 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
3747 4121 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
3748 4122 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
3749 4123 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
3750 4124 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
3751 4125 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
3752 4126 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
3753 4127 8.172484 CGTCCGAAAATACTTGTCATCAAAATA 58.828 33.333 0.00 0.00 32.87 1.40
3754 4128 9.834628 GTCCGAAAATACTTGTCATCAAAATAA 57.165 29.630 0.00 0.00 32.87 1.40
3763 4137 8.661352 ACTTGTCATCAAAATAAACAAAAGGG 57.339 30.769 0.00 0.00 32.87 3.95
3764 4138 7.714813 ACTTGTCATCAAAATAAACAAAAGGGG 59.285 33.333 0.00 0.00 32.87 4.79
3765 4139 7.366847 TGTCATCAAAATAAACAAAAGGGGA 57.633 32.000 0.00 0.00 0.00 4.81
3766 4140 7.972301 TGTCATCAAAATAAACAAAAGGGGAT 58.028 30.769 0.00 0.00 0.00 3.85
3767 4141 7.877097 TGTCATCAAAATAAACAAAAGGGGATG 59.123 33.333 0.00 0.00 0.00 3.51
3768 4142 7.877612 GTCATCAAAATAAACAAAAGGGGATGT 59.122 33.333 0.00 0.00 32.47 3.06
3769 4143 9.094578 TCATCAAAATAAACAAAAGGGGATGTA 57.905 29.630 0.00 0.00 32.47 2.29
3770 4144 9.889128 CATCAAAATAAACAAAAGGGGATGTAT 57.111 29.630 0.00 0.00 0.00 2.29
3772 4146 9.320295 TCAAAATAAACAAAAGGGGATGTATCT 57.680 29.630 0.00 0.00 0.00 1.98
3777 4151 7.939784 AAACAAAAGGGGATGTATCTAGAAC 57.060 36.000 0.00 0.00 0.00 3.01
3778 4152 6.893020 ACAAAAGGGGATGTATCTAGAACT 57.107 37.500 0.00 0.00 0.00 3.01
3779 4153 7.989947 ACAAAAGGGGATGTATCTAGAACTA 57.010 36.000 0.00 0.00 0.00 2.24
3780 4154 8.388656 ACAAAAGGGGATGTATCTAGAACTAA 57.611 34.615 0.00 0.00 0.00 2.24
3781 4155 8.832735 ACAAAAGGGGATGTATCTAGAACTAAA 58.167 33.333 0.00 0.00 0.00 1.85
3782 4156 9.681062 CAAAAGGGGATGTATCTAGAACTAAAA 57.319 33.333 0.00 0.00 0.00 1.52
3824 4198 9.918630 CCTCTTTTATTCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
3831 4205 6.435430 TCATTTTGATGACAAGTATTCCCG 57.565 37.500 0.00 0.00 37.32 5.14
3832 4206 5.356751 TCATTTTGATGACAAGTATTCCCGG 59.643 40.000 0.00 0.00 37.32 5.73
3833 4207 4.561500 TTTGATGACAAGTATTCCCGGA 57.438 40.909 0.73 0.00 37.32 5.14
3834 4208 3.536956 TGATGACAAGTATTCCCGGAC 57.463 47.619 0.73 0.00 0.00 4.79
3835 4209 2.159156 TGATGACAAGTATTCCCGGACG 60.159 50.000 0.73 0.00 0.00 4.79
3836 4210 0.533491 TGACAAGTATTCCCGGACGG 59.467 55.000 0.73 3.25 0.00 4.79
3878 4252 1.482182 TCAATATGCTCACGAGGCTGT 59.518 47.619 0.00 0.00 0.00 4.40
3889 4263 1.159285 CGAGGCTGTTGCTTTGATCA 58.841 50.000 0.00 0.00 39.59 2.92
3894 4268 3.575256 AGGCTGTTGCTTTGATCAATGAA 59.425 39.130 21.92 11.23 39.59 2.57
3932 4306 7.981102 GTGTTTTCACTTCCTTATACTTCCT 57.019 36.000 0.00 0.00 46.30 3.36
3933 4307 8.030744 GTGTTTTCACTTCCTTATACTTCCTC 57.969 38.462 0.00 0.00 46.30 3.71
3934 4308 7.119407 GTGTTTTCACTTCCTTATACTTCCTCC 59.881 40.741 0.00 0.00 46.30 4.30
3935 4309 5.593679 TTCACTTCCTTATACTTCCTCCG 57.406 43.478 0.00 0.00 0.00 4.63
3936 4310 4.607239 TCACTTCCTTATACTTCCTCCGT 58.393 43.478 0.00 0.00 0.00 4.69
3937 4311 5.021458 TCACTTCCTTATACTTCCTCCGTT 58.979 41.667 0.00 0.00 0.00 4.44
3938 4312 5.126707 TCACTTCCTTATACTTCCTCCGTTC 59.873 44.000 0.00 0.00 0.00 3.95
3939 4313 4.405036 ACTTCCTTATACTTCCTCCGTTCC 59.595 45.833 0.00 0.00 0.00 3.62
3940 4314 4.261411 TCCTTATACTTCCTCCGTTCCT 57.739 45.455 0.00 0.00 0.00 3.36
3941 4315 5.393068 TCCTTATACTTCCTCCGTTCCTA 57.607 43.478 0.00 0.00 0.00 2.94
3942 4316 5.769835 TCCTTATACTTCCTCCGTTCCTAA 58.230 41.667 0.00 0.00 0.00 2.69
3943 4317 6.197168 TCCTTATACTTCCTCCGTTCCTAAA 58.803 40.000 0.00 0.00 0.00 1.85
3944 4318 6.842807 TCCTTATACTTCCTCCGTTCCTAAAT 59.157 38.462 0.00 0.00 0.00 1.40
3945 4319 6.929606 CCTTATACTTCCTCCGTTCCTAAATG 59.070 42.308 0.00 0.00 0.00 2.32
3946 4320 5.952347 ATACTTCCTCCGTTCCTAAATGT 57.048 39.130 0.00 0.00 0.00 2.71
3947 4321 8.537728 TTATACTTCCTCCGTTCCTAAATGTA 57.462 34.615 0.00 0.00 0.00 2.29
3948 4322 5.750352 ACTTCCTCCGTTCCTAAATGTAA 57.250 39.130 0.00 0.00 0.00 2.41
3949 4323 5.731591 ACTTCCTCCGTTCCTAAATGTAAG 58.268 41.667 0.00 0.00 0.00 2.34
3950 4324 5.247792 ACTTCCTCCGTTCCTAAATGTAAGT 59.752 40.000 0.00 0.00 0.00 2.24
3951 4325 5.334724 TCCTCCGTTCCTAAATGTAAGTC 57.665 43.478 0.00 0.00 0.00 3.01
3952 4326 5.021458 TCCTCCGTTCCTAAATGTAAGTCT 58.979 41.667 0.00 0.00 0.00 3.24
3953 4327 5.482878 TCCTCCGTTCCTAAATGTAAGTCTT 59.517 40.000 0.00 0.00 0.00 3.01
3954 4328 6.013984 TCCTCCGTTCCTAAATGTAAGTCTTT 60.014 38.462 0.00 0.00 0.00 2.52
3955 4329 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
3956 4330 6.527423 TCCGTTCCTAAATGTAAGTCTTTGT 58.473 36.000 0.00 0.00 0.00 2.83
3957 4331 7.669427 TCCGTTCCTAAATGTAAGTCTTTGTA 58.331 34.615 0.00 0.00 0.00 2.41
3958 4332 8.149647 TCCGTTCCTAAATGTAAGTCTTTGTAA 58.850 33.333 0.00 0.00 0.00 2.41
3959 4333 8.776470 CCGTTCCTAAATGTAAGTCTTTGTAAA 58.224 33.333 0.00 0.00 0.00 2.01
3960 4334 9.807386 CGTTCCTAAATGTAAGTCTTTGTAAAG 57.193 33.333 0.00 0.00 37.36 1.85
3986 4360 8.813643 ATTTTACTATGAACTACATACGGAGC 57.186 34.615 0.00 0.00 40.07 4.70
3987 4361 6.947644 TTACTATGAACTACATACGGAGCA 57.052 37.500 0.00 0.00 40.07 4.26
3988 4362 5.847111 ACTATGAACTACATACGGAGCAA 57.153 39.130 0.00 0.00 40.07 3.91
3989 4363 6.216801 ACTATGAACTACATACGGAGCAAA 57.783 37.500 0.00 0.00 40.07 3.68
3990 4364 6.636705 ACTATGAACTACATACGGAGCAAAA 58.363 36.000 0.00 0.00 40.07 2.44
3991 4365 7.272978 ACTATGAACTACATACGGAGCAAAAT 58.727 34.615 0.00 0.00 40.07 1.82
3992 4366 5.794687 TGAACTACATACGGAGCAAAATG 57.205 39.130 0.00 0.00 0.00 2.32
3993 4367 5.483811 TGAACTACATACGGAGCAAAATGA 58.516 37.500 0.00 0.00 0.00 2.57
3994 4368 5.580691 TGAACTACATACGGAGCAAAATGAG 59.419 40.000 0.00 0.00 0.00 2.90
3995 4369 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3996 4370 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3997 4371 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3998 4372 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3999 4373 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4000 4374 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4001 4375 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4002 4376 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4003 4377 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
4004 4378 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
4005 4379 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
4017 4391 7.458409 AGTGAATCTACACTCAAAATGCATT 57.542 32.000 5.99 5.99 46.36 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.056035 ACGACATTCAAGTTACTCTCCCC 60.056 47.826 0.00 0.00 0.00 4.81
9 10 6.331061 ACATACGACATTCAAGTTACTCTCC 58.669 40.000 0.00 0.00 0.00 3.71
50 55 3.323243 CGCTATGACTAATAAACCCCGG 58.677 50.000 0.00 0.00 0.00 5.73
52 57 3.735591 TGCGCTATGACTAATAAACCCC 58.264 45.455 9.73 0.00 0.00 4.95
96 101 8.756864 TCGTGGTTTTAGTTCAAAATTAAATGC 58.243 29.630 0.00 0.00 38.36 3.56
173 178 5.049954 TCGTATTTGAAAGGAGTTTCCAACG 60.050 40.000 0.00 0.00 41.37 4.10
174 179 6.308371 TCGTATTTGAAAGGAGTTTCCAAC 57.692 37.500 0.00 0.00 41.37 3.77
301 306 7.093068 TGGAGTTGGAGCTTATGAATGTACTAA 60.093 37.037 0.00 0.00 0.00 2.24
460 607 0.664224 GTCCTCTACGGTCTAGCTGC 59.336 60.000 0.00 0.00 0.00 5.25
484 631 2.303311 GGAGGAAGGGCAGATACATACC 59.697 54.545 0.00 0.00 0.00 2.73
569 716 3.338249 ACTTGATTCGAACTGGATGTGG 58.662 45.455 0.00 0.00 0.00 4.17
691 838 9.806203 TTAAGATTCTGTTTGCATTTATCCATG 57.194 29.630 0.00 0.00 0.00 3.66
728 875 9.817809 TCAATTCCTAATGTGTCTATTAGTGAC 57.182 33.333 0.00 0.00 38.42 3.67
784 945 2.351932 GCAAGGCGATCTAGCTACTACC 60.352 54.545 0.00 0.00 37.29 3.18
788 949 0.319986 GGGCAAGGCGATCTAGCTAC 60.320 60.000 0.00 0.00 37.29 3.58
854 1015 1.405105 GCAAAGGATGATAGGCGCAAA 59.595 47.619 10.83 0.00 0.00 3.68
962 1123 6.071503 GGAGGTAGCTAAGTGTGTAAAGAGAA 60.072 42.308 0.00 0.00 0.00 2.87
1205 1366 0.693049 CAAGAACCCCTGCAGGTAGT 59.307 55.000 30.63 23.77 40.05 2.73
1243 1404 2.485582 CACGTCGAGATGCCGAGT 59.514 61.111 0.00 0.00 39.43 4.18
1371 1532 1.153804 GCCTCCGGACGAGAAAGAC 60.154 63.158 0.00 0.00 41.63 3.01
1505 1666 3.113322 CAGATCAGCATCAAAATTGGCG 58.887 45.455 0.00 0.00 0.00 5.69
1506 1667 2.864343 GCAGATCAGCATCAAAATTGGC 59.136 45.455 5.05 0.00 0.00 4.52
1507 1668 4.112634 CAGCAGATCAGCATCAAAATTGG 58.887 43.478 13.03 0.00 36.85 3.16
1509 1670 4.219944 ACACAGCAGATCAGCATCAAAATT 59.780 37.500 13.03 0.00 36.85 1.82
1511 1672 3.057806 CACACAGCAGATCAGCATCAAAA 60.058 43.478 13.03 0.00 36.85 2.44
1626 1788 6.578919 GCAGAACGAAAGAAAATCCAAGTAAG 59.421 38.462 0.00 0.00 0.00 2.34
1661 1823 5.235850 TCACCTAATAGACAAGGCACAAA 57.764 39.130 0.00 0.00 36.24 2.83
1679 1841 4.618227 GCAAACCCTAATGTTCACATCACC 60.618 45.833 0.00 0.00 35.10 4.02
1707 1869 8.507524 ACTATAAGAACCCTAATGAAGCAAAC 57.492 34.615 0.00 0.00 0.00 2.93
1738 1900 2.370849 GGGCTAACCGGATCTAATTCCA 59.629 50.000 9.46 0.00 35.34 3.53
1739 1901 2.290134 GGGGCTAACCGGATCTAATTCC 60.290 54.545 9.46 0.00 41.60 3.01
1770 1932 6.163476 AGCATATAAGACGACAAAAGTGTGA 58.837 36.000 0.00 0.00 38.41 3.58
1857 2019 7.311364 GAAGATCTCTTCTAGAGTGTACGTT 57.689 40.000 11.79 0.00 46.59 3.99
1959 2121 4.895889 GGGGGAGAGATCTTTATTTTTGGG 59.104 45.833 0.00 0.00 0.00 4.12
2070 2233 6.412214 AGATCACATGTCATGACAAGATCAA 58.588 36.000 37.50 24.05 45.41 2.57
2153 2343 8.851145 TGATCAGTGTTGTAGATCTATAGTTCC 58.149 37.037 5.57 0.00 39.07 3.62
2154 2344 9.672086 GTGATCAGTGTTGTAGATCTATAGTTC 57.328 37.037 5.57 0.95 39.07 3.01
2155 2345 9.415008 AGTGATCAGTGTTGTAGATCTATAGTT 57.585 33.333 5.57 0.00 39.07 2.24
2189 2383 3.443681 GTGCAGCCCATGTTATGTAGTTT 59.556 43.478 0.00 0.00 0.00 2.66
2195 2389 1.031571 ACGGTGCAGCCCATGTTATG 61.032 55.000 10.90 0.00 0.00 1.90
2255 2454 3.670625 TCAATCGTGATTTTCCGGAAGT 58.329 40.909 17.97 10.47 0.00 3.01
2274 2474 5.357742 TGCTTAGCTAGGTCAATCAATCA 57.642 39.130 5.60 0.00 0.00 2.57
2325 2529 7.996098 AAATAAGCAGTTAACAGGCTAGAAA 57.004 32.000 20.67 10.40 36.76 2.52
2326 2530 9.681062 AATAAATAAGCAGTTAACAGGCTAGAA 57.319 29.630 20.67 12.28 36.76 2.10
2327 2531 9.681062 AAATAAATAAGCAGTTAACAGGCTAGA 57.319 29.630 20.67 14.06 36.76 2.43
2330 2534 9.423061 CAAAAATAAATAAGCAGTTAACAGGCT 57.577 29.630 16.34 16.34 40.14 4.58
2331 2535 9.203421 ACAAAAATAAATAAGCAGTTAACAGGC 57.797 29.630 8.61 11.02 0.00 4.85
2338 2542 8.821894 TCGCAAAACAAAAATAAATAAGCAGTT 58.178 25.926 0.00 0.00 0.00 3.16
2339 2543 8.359060 TCGCAAAACAAAAATAAATAAGCAGT 57.641 26.923 0.00 0.00 0.00 4.40
2340 2544 9.253275 CATCGCAAAACAAAAATAAATAAGCAG 57.747 29.630 0.00 0.00 0.00 4.24
2374 2578 3.791353 GCAGCGGCAAAGTAATTAATCAC 59.209 43.478 3.18 0.00 40.72 3.06
2665 2873 3.066814 GGTACGACCGCTCCACCT 61.067 66.667 0.00 0.00 0.00 4.00
2919 3127 1.895707 CCGCCATTGGATGAGAGGC 60.896 63.158 6.95 0.00 41.86 4.70
2987 3195 1.078347 GGGCATTGTGGAAGGGGAA 59.922 57.895 0.00 0.00 0.00 3.97
3185 3396 5.227908 AGTTCAAGATGAAAAGCTTGCATG 58.772 37.500 17.02 7.33 38.22 4.06
3326 3537 4.806330 AGTACATGTACAAGAAGTCCACG 58.194 43.478 32.02 0.00 38.48 4.94
3369 3580 8.394121 GTGAAGTGAAATATTCCTCTCATGAAC 58.606 37.037 0.00 0.00 0.00 3.18
3372 3583 8.503458 AAGTGAAGTGAAATATTCCTCTCATG 57.497 34.615 0.00 0.00 0.00 3.07
3469 3680 5.835280 CCATCAAGGAAGTGCCCTTAAATAT 59.165 40.000 0.00 0.00 44.30 1.28
3530 3741 4.108336 CGCCATGATTATCTCGAGTATGG 58.892 47.826 13.13 16.51 37.30 2.74
3535 3746 2.070262 TGCGCCATGATTATCTCGAG 57.930 50.000 5.93 5.93 0.00 4.04
3584 3795 2.193536 AAGAAACCGCCCAGTGCAC 61.194 57.895 9.40 9.40 41.33 4.57
3722 4096 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3723 4097 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3724 4098 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
3725 4099 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
3726 4100 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
3727 4101 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
3728 4102 9.834628 TTATTTTGATGACAAGTATTTTCGGAC 57.165 29.630 0.00 0.00 37.32 4.79
3737 4111 9.757227 CCCTTTTGTTTATTTTGATGACAAGTA 57.243 29.630 0.00 0.00 37.32 2.24
3738 4112 7.714813 CCCCTTTTGTTTATTTTGATGACAAGT 59.285 33.333 0.00 0.00 37.32 3.16
3739 4113 7.930865 TCCCCTTTTGTTTATTTTGATGACAAG 59.069 33.333 0.00 0.00 37.32 3.16
3740 4114 7.796054 TCCCCTTTTGTTTATTTTGATGACAA 58.204 30.769 0.00 0.00 0.00 3.18
3741 4115 7.366847 TCCCCTTTTGTTTATTTTGATGACA 57.633 32.000 0.00 0.00 0.00 3.58
3742 4116 7.877612 ACATCCCCTTTTGTTTATTTTGATGAC 59.122 33.333 0.00 0.00 32.39 3.06
3743 4117 7.972301 ACATCCCCTTTTGTTTATTTTGATGA 58.028 30.769 0.00 0.00 32.39 2.92
3744 4118 9.889128 ATACATCCCCTTTTGTTTATTTTGATG 57.111 29.630 0.00 0.00 33.80 3.07
3746 4120 9.320295 AGATACATCCCCTTTTGTTTATTTTGA 57.680 29.630 0.00 0.00 0.00 2.69
3751 4125 9.628500 GTTCTAGATACATCCCCTTTTGTTTAT 57.372 33.333 0.00 0.00 0.00 1.40
3752 4126 8.832735 AGTTCTAGATACATCCCCTTTTGTTTA 58.167 33.333 0.00 0.00 0.00 2.01
3753 4127 7.699878 AGTTCTAGATACATCCCCTTTTGTTT 58.300 34.615 0.00 0.00 0.00 2.83
3754 4128 7.272144 AGTTCTAGATACATCCCCTTTTGTT 57.728 36.000 0.00 0.00 0.00 2.83
3755 4129 6.893020 AGTTCTAGATACATCCCCTTTTGT 57.107 37.500 0.00 0.00 0.00 2.83
3756 4130 9.681062 TTTTAGTTCTAGATACATCCCCTTTTG 57.319 33.333 0.00 0.00 0.00 2.44
3798 4172 9.918630 ACTTGTCATCAAAATGAATAAAAGAGG 57.081 29.630 0.00 0.00 43.42 3.69
3805 4179 8.620416 CGGGAATACTTGTCATCAAAATGAATA 58.380 33.333 0.00 0.00 43.42 1.75
3806 4180 7.416664 CCGGGAATACTTGTCATCAAAATGAAT 60.417 37.037 0.00 0.00 43.42 2.57
3807 4181 6.127758 CCGGGAATACTTGTCATCAAAATGAA 60.128 38.462 0.00 0.00 43.42 2.57
3808 4182 5.356751 CCGGGAATACTTGTCATCAAAATGA 59.643 40.000 0.00 0.00 39.63 2.57
3809 4183 5.356751 TCCGGGAATACTTGTCATCAAAATG 59.643 40.000 0.00 0.00 32.87 2.32
3810 4184 5.357032 GTCCGGGAATACTTGTCATCAAAAT 59.643 40.000 0.00 0.00 32.87 1.82
3811 4185 4.698304 GTCCGGGAATACTTGTCATCAAAA 59.302 41.667 0.00 0.00 32.87 2.44
3812 4186 4.258543 GTCCGGGAATACTTGTCATCAAA 58.741 43.478 0.00 0.00 32.87 2.69
3813 4187 3.677700 CGTCCGGGAATACTTGTCATCAA 60.678 47.826 0.00 0.00 0.00 2.57
3814 4188 2.159156 CGTCCGGGAATACTTGTCATCA 60.159 50.000 0.00 0.00 0.00 3.07
3815 4189 2.470821 CGTCCGGGAATACTTGTCATC 58.529 52.381 0.00 0.00 0.00 2.92
3816 4190 1.138266 CCGTCCGGGAATACTTGTCAT 59.862 52.381 0.00 0.00 38.47 3.06
3817 4191 0.533491 CCGTCCGGGAATACTTGTCA 59.467 55.000 0.00 0.00 38.47 3.58
3818 4192 3.357504 CCGTCCGGGAATACTTGTC 57.642 57.895 0.00 0.00 38.47 3.18
3836 4210 6.075984 TGACTGAGATAAATAGTACTCCCCC 58.924 44.000 0.00 0.00 0.00 5.40
3837 4211 7.598759 TTGACTGAGATAAATAGTACTCCCC 57.401 40.000 0.00 0.00 0.00 4.81
3844 4218 9.703892 GTGAGCATATTGACTGAGATAAATAGT 57.296 33.333 0.00 0.00 0.00 2.12
3845 4219 8.858186 CGTGAGCATATTGACTGAGATAAATAG 58.142 37.037 0.00 0.00 0.00 1.73
3846 4220 8.576442 TCGTGAGCATATTGACTGAGATAAATA 58.424 33.333 0.00 0.00 0.00 1.40
3906 4280 7.878644 AGGAAGTATAAGGAAGTGAAAACACTC 59.121 37.037 3.38 0.00 33.73 3.51
3930 4304 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3931 4305 6.649557 ACAAAGACTTACATTTAGGAACGGAG 59.350 38.462 0.00 0.00 0.00 4.63
3932 4306 6.527423 ACAAAGACTTACATTTAGGAACGGA 58.473 36.000 0.00 0.00 0.00 4.69
3933 4307 6.796705 ACAAAGACTTACATTTAGGAACGG 57.203 37.500 0.00 0.00 0.00 4.44
3934 4308 9.807386 CTTTACAAAGACTTACATTTAGGAACG 57.193 33.333 0.00 0.00 38.28 3.95
3960 4334 8.913656 GCTCCGTATGTAGTTCATAGTAAAATC 58.086 37.037 0.00 0.00 39.36 2.17
3961 4335 8.418662 TGCTCCGTATGTAGTTCATAGTAAAAT 58.581 33.333 0.00 0.00 39.36 1.82
3962 4336 7.774134 TGCTCCGTATGTAGTTCATAGTAAAA 58.226 34.615 0.00 0.00 39.36 1.52
3963 4337 7.337480 TGCTCCGTATGTAGTTCATAGTAAA 57.663 36.000 0.00 0.00 39.36 2.01
3964 4338 6.947644 TGCTCCGTATGTAGTTCATAGTAA 57.052 37.500 0.00 0.00 39.36 2.24
3965 4339 6.947644 TTGCTCCGTATGTAGTTCATAGTA 57.052 37.500 0.00 0.00 39.36 1.82
3966 4340 5.847111 TTGCTCCGTATGTAGTTCATAGT 57.153 39.130 0.00 0.00 39.36 2.12
3967 4341 7.438160 TCATTTTGCTCCGTATGTAGTTCATAG 59.562 37.037 0.00 0.00 39.36 2.23
3968 4342 7.269316 TCATTTTGCTCCGTATGTAGTTCATA 58.731 34.615 0.00 0.00 37.91 2.15
3969 4343 6.112734 TCATTTTGCTCCGTATGTAGTTCAT 58.887 36.000 0.00 0.00 40.25 2.57
3970 4344 5.483811 TCATTTTGCTCCGTATGTAGTTCA 58.516 37.500 0.00 0.00 0.00 3.18
3971 4345 5.581085 ACTCATTTTGCTCCGTATGTAGTTC 59.419 40.000 0.00 0.00 0.00 3.01
3972 4346 5.351465 CACTCATTTTGCTCCGTATGTAGTT 59.649 40.000 0.00 0.00 0.00 2.24
3973 4347 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3974 4348 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3975 4349 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3976 4350 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3977 4351 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3978 4352 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3979 4353 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3980 4354 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3981 4355 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3982 4356 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3983 4357 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.