Multiple sequence alignment - TraesCS3B01G255600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G255600 chr3B 100.000 3154 0 0 1 3154 412594904 412598057 0.000000e+00 5825.0
1 TraesCS3B01G255600 chr3B 83.418 1188 124 42 1070 2234 663062316 663061179 0.000000e+00 1035.0
2 TraesCS3B01G255600 chr3B 83.236 853 80 29 1370 2215 663071951 663071155 0.000000e+00 725.0
3 TraesCS3B01G255600 chr3B 94.495 327 16 2 280 604 249997649 249997323 1.310000e-138 503.0
4 TraesCS3B01G255600 chr3B 91.822 269 8 7 998 1266 663072231 663071977 2.310000e-96 363.0
5 TraesCS3B01G255600 chr3A 94.254 1810 61 10 603 2395 428570671 428568888 0.000000e+00 2726.0
6 TraesCS3B01G255600 chr3A 84.053 1273 113 45 981 2238 640951828 640953025 0.000000e+00 1144.0
7 TraesCS3B01G255600 chr3A 83.975 1273 114 45 981 2238 641012122 641013319 0.000000e+00 1138.0
8 TraesCS3B01G255600 chr3A 84.530 808 80 18 1415 2215 640879931 640880700 0.000000e+00 758.0
9 TraesCS3B01G255600 chr3A 91.667 264 9 6 998 1261 640879609 640879859 1.390000e-93 353.0
10 TraesCS3B01G255600 chr3A 91.946 149 4 3 1 141 428570903 428570755 5.330000e-48 202.0
11 TraesCS3B01G255600 chr3A 96.000 75 2 1 208 281 428570744 428570670 1.540000e-23 121.0
12 TraesCS3B01G255600 chr3A 90.769 65 3 2 621 682 640951437 640951501 2.020000e-12 84.2
13 TraesCS3B01G255600 chr3A 90.769 65 3 2 621 682 641011731 641011795 2.020000e-12 84.2
14 TraesCS3B01G255600 chr3D 93.310 1689 52 19 603 2280 308986223 308984585 0.000000e+00 2436.0
15 TraesCS3B01G255600 chr3D 83.267 1255 125 45 998 2234 501413265 501414452 0.000000e+00 1075.0
16 TraesCS3B01G255600 chr3D 84.491 806 69 26 1415 2215 501331926 501332680 0.000000e+00 745.0
17 TraesCS3B01G255600 chr3D 85.529 539 51 9 2347 2878 308984572 308984054 3.580000e-149 538.0
18 TraesCS3B01G255600 chr3D 91.228 285 8 2 1 281 308986493 308986222 3.840000e-99 372.0
19 TraesCS3B01G255600 chr3D 89.153 295 14 7 971 1261 501331566 501331846 5.010000e-93 351.0
20 TraesCS3B01G255600 chr3D 90.769 65 3 2 621 682 501412876 501412940 2.020000e-12 84.2
21 TraesCS3B01G255600 chr1D 86.279 481 57 7 2401 2876 452206693 452206217 6.030000e-142 514.0
22 TraesCS3B01G255600 chr7B 94.833 329 16 1 280 607 530307811 530307483 2.170000e-141 512.0
23 TraesCS3B01G255600 chr7B 91.268 355 26 5 275 625 711746602 711746955 2.200000e-131 479.0
24 TraesCS3B01G255600 chr7B 85.714 280 24 4 2876 3154 296319627 296319363 6.660000e-72 281.0
25 TraesCS3B01G255600 chr2B 95.092 326 14 2 280 604 340976983 340977307 2.170000e-141 512.0
26 TraesCS3B01G255600 chr2B 84.826 402 54 2 2483 2877 77246912 77247313 6.340000e-107 398.0
27 TraesCS3B01G255600 chr4D 94.562 331 15 3 280 607 418889336 418889006 2.810000e-140 508.0
28 TraesCS3B01G255600 chr4D 94.801 327 15 2 280 604 418889673 418889347 2.810000e-140 508.0
29 TraesCS3B01G255600 chr7D 94.225 329 17 2 279 605 301954829 301954501 4.700000e-138 501.0
30 TraesCS3B01G255600 chr7D 91.901 284 19 4 2873 3154 503342136 503342417 8.200000e-106 394.0
31 TraesCS3B01G255600 chr5D 94.207 328 17 2 279 604 124799838 124799511 1.690000e-137 499.0
32 TraesCS3B01G255600 chr7A 93.235 340 18 4 270 607 56193140 56192804 2.190000e-136 496.0
33 TraesCS3B01G255600 chr7A 93.684 285 15 3 2872 3154 35698775 35699058 1.050000e-114 424.0
34 TraesCS3B01G255600 chr7A 83.063 431 68 4 2451 2878 144156550 144156122 1.370000e-103 387.0
35 TraesCS3B01G255600 chr7A 81.316 471 68 15 2418 2878 94395064 94394604 6.430000e-97 364.0
36 TraesCS3B01G255600 chr2D 84.472 483 67 3 2403 2878 73208079 73208560 1.320000e-128 470.0
37 TraesCS3B01G255600 chr2D 84.848 396 47 9 2493 2878 622495844 622495452 1.370000e-103 387.0
38 TraesCS3B01G255600 chr2D 85.950 363 37 12 2451 2803 11520111 11519753 2.970000e-100 375.0
39 TraesCS3B01G255600 chr6D 82.402 483 76 8 2403 2878 2481627 2481147 2.260000e-111 412.0
40 TraesCS3B01G255600 chr6B 86.538 260 34 1 2879 3137 240903185 240902926 5.150000e-73 285.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G255600 chr3B 412594904 412598057 3153 False 5825.000000 5825 100.000000 1 3154 1 chr3B.!!$F1 3153
1 TraesCS3B01G255600 chr3B 663061179 663062316 1137 True 1035.000000 1035 83.418000 1070 2234 1 chr3B.!!$R2 1164
2 TraesCS3B01G255600 chr3B 663071155 663072231 1076 True 544.000000 725 87.529000 998 2215 2 chr3B.!!$R3 1217
3 TraesCS3B01G255600 chr3A 428568888 428570903 2015 True 1016.333333 2726 94.066667 1 2395 3 chr3A.!!$R1 2394
4 TraesCS3B01G255600 chr3A 640951437 640953025 1588 False 614.100000 1144 87.411000 621 2238 2 chr3A.!!$F2 1617
5 TraesCS3B01G255600 chr3A 641011731 641013319 1588 False 611.100000 1138 87.372000 621 2238 2 chr3A.!!$F3 1617
6 TraesCS3B01G255600 chr3A 640879609 640880700 1091 False 555.500000 758 88.098500 998 2215 2 chr3A.!!$F1 1217
7 TraesCS3B01G255600 chr3D 308984054 308986493 2439 True 1115.333333 2436 90.022333 1 2878 3 chr3D.!!$R1 2877
8 TraesCS3B01G255600 chr3D 501412876 501414452 1576 False 579.600000 1075 87.018000 621 2234 2 chr3D.!!$F2 1613
9 TraesCS3B01G255600 chr3D 501331566 501332680 1114 False 548.000000 745 86.822000 971 2215 2 chr3D.!!$F1 1244
10 TraesCS3B01G255600 chr4D 418889006 418889673 667 True 508.000000 508 94.681500 280 607 2 chr4D.!!$R1 327

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 265 0.038251 CACTGTTGGAGCACGCTCTA 60.038 55.000 17.99 10.02 42.38 2.43 F
933 969 1.126846 GATTTTGACGTCTGCGAGTGG 59.873 52.381 17.92 0.00 42.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1296 1439 1.273324 ACTAGGACCCCCAGAAGACAG 60.273 57.143 0.0 0.0 33.88 3.51 R
2430 2645 0.108329 ACGAACATACAAGGAGCCGG 60.108 55.000 0.0 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 128 0.600557 AGCTTGAGAGAGACCACACG 59.399 55.000 0.00 0.00 0.00 4.49
151 156 2.914379 AGGCAGTTCCTTTTCGTCG 58.086 52.632 0.00 0.00 44.75 5.12
152 157 0.391597 AGGCAGTTCCTTTTCGTCGA 59.608 50.000 0.00 0.00 44.75 4.20
153 158 1.202604 AGGCAGTTCCTTTTCGTCGAA 60.203 47.619 2.90 2.90 44.75 3.71
154 159 1.600485 GGCAGTTCCTTTTCGTCGAAA 59.400 47.619 16.22 16.22 0.00 3.46
155 160 2.349532 GGCAGTTCCTTTTCGTCGAAAG 60.350 50.000 18.96 13.35 36.59 2.62
186 191 0.458669 CATGATCAAGGCAGTTGGGC 59.541 55.000 0.00 0.00 43.80 5.36
202 207 4.240881 GCTTTGATGCCATCGGGA 57.759 55.556 0.00 0.00 35.59 5.14
203 208 1.729881 GCTTTGATGCCATCGGGAC 59.270 57.895 0.00 0.00 35.59 4.46
246 264 1.301244 CACTGTTGGAGCACGCTCT 60.301 57.895 17.99 0.00 42.38 4.09
247 265 0.038251 CACTGTTGGAGCACGCTCTA 60.038 55.000 17.99 10.02 42.38 2.43
293 311 8.798975 TTAATCACATATACTCCCTCCTTTCT 57.201 34.615 0.00 0.00 0.00 2.52
305 323 3.786450 CCCTCCTTTCTGGTTTATAGGGT 59.214 47.826 0.00 0.00 39.14 4.34
312 330 8.842764 TCCTTTCTGGTTTATAGGGTTTATCTT 58.157 33.333 0.00 0.00 37.07 2.40
350 369 8.956533 TTCCATTTTATAAGGCTTAATTTGGC 57.043 30.769 11.59 0.00 0.00 4.52
374 394 5.078949 TGTTCCCATCACATGTTCAGATTT 58.921 37.500 0.00 0.00 0.00 2.17
386 406 6.209192 ACATGTTCAGATTTCAAGGTGCATTA 59.791 34.615 0.00 0.00 0.00 1.90
432 452 7.414222 AGAGAAAATTGACCAATGCATGTAT 57.586 32.000 0.00 0.00 0.00 2.29
593 613 8.887264 TTGAATTAAGCCCTATAAACCAGAAA 57.113 30.769 0.00 0.00 0.00 2.52
594 614 8.519799 TGAATTAAGCCCTATAAACCAGAAAG 57.480 34.615 0.00 0.00 0.00 2.62
595 615 7.559897 TGAATTAAGCCCTATAAACCAGAAAGG 59.440 37.037 0.00 0.00 45.67 3.11
596 616 6.645884 TTAAGCCCTATAAACCAGAAAGGA 57.354 37.500 0.00 0.00 41.22 3.36
597 617 4.779993 AGCCCTATAAACCAGAAAGGAG 57.220 45.455 0.00 0.00 41.22 3.69
598 618 3.459969 AGCCCTATAAACCAGAAAGGAGG 59.540 47.826 0.00 0.00 41.22 4.30
599 619 3.435169 GCCCTATAAACCAGAAAGGAGGG 60.435 52.174 0.00 0.00 45.37 4.30
600 620 4.045022 CCCTATAAACCAGAAAGGAGGGA 58.955 47.826 0.00 0.00 45.41 4.20
601 621 4.103311 CCCTATAAACCAGAAAGGAGGGAG 59.897 50.000 0.00 0.00 45.41 4.30
619 639 3.325135 GGGAGTATCACCGGAAATCTCAT 59.675 47.826 9.46 0.00 36.25 2.90
682 705 3.165071 TGCTAGTCTGTGTGAAGGATCA 58.835 45.455 0.00 0.00 0.00 2.92
686 709 2.369860 AGTCTGTGTGAAGGATCAGCAA 59.630 45.455 0.00 0.00 35.88 3.91
687 710 2.481952 GTCTGTGTGAAGGATCAGCAAC 59.518 50.000 0.00 0.00 35.88 4.17
688 711 2.369860 TCTGTGTGAAGGATCAGCAACT 59.630 45.455 0.00 0.00 35.88 3.16
901 937 3.066814 CCTGCCTGCCTGCCTTTC 61.067 66.667 0.00 0.00 0.00 2.62
902 938 3.437795 CTGCCTGCCTGCCTTTCG 61.438 66.667 0.00 0.00 0.00 3.46
903 939 3.907260 CTGCCTGCCTGCCTTTCGA 62.907 63.158 0.00 0.00 0.00 3.71
904 940 3.130160 GCCTGCCTGCCTTTCGAG 61.130 66.667 0.00 0.00 0.00 4.04
905 941 2.348998 CCTGCCTGCCTTTCGAGT 59.651 61.111 0.00 0.00 0.00 4.18
933 969 1.126846 GATTTTGACGTCTGCGAGTGG 59.873 52.381 17.92 0.00 42.00 4.00
1307 1450 0.390472 GCCGTCTTCTGTCTTCTGGG 60.390 60.000 0.00 0.00 0.00 4.45
1309 1452 0.247736 CGTCTTCTGTCTTCTGGGGG 59.752 60.000 0.00 0.00 0.00 5.40
1310 1453 1.353091 GTCTTCTGTCTTCTGGGGGT 58.647 55.000 0.00 0.00 0.00 4.95
1317 1468 2.005350 TGTCTTCTGGGGGTCCTAGTA 58.995 52.381 0.00 0.00 0.00 1.82
1319 1470 3.032459 GTCTTCTGGGGGTCCTAGTAAG 58.968 54.545 0.00 1.71 0.00 2.34
1327 1478 1.907255 GGGTCCTAGTAAGCAGTGGTT 59.093 52.381 12.91 12.91 0.00 3.67
1422 1598 7.701539 TGCTTATTAGATGGAATTGTTGTGT 57.298 32.000 0.00 0.00 0.00 3.72
2007 2195 0.307760 GCCACTGAAACTCACAACCG 59.692 55.000 0.00 0.00 0.00 4.44
2318 2533 4.708177 GTGCTCTGATTATTCTTAGGCCA 58.292 43.478 5.01 0.00 0.00 5.36
2319 2534 4.513318 GTGCTCTGATTATTCTTAGGCCAC 59.487 45.833 5.01 0.00 0.00 5.01
2320 2535 4.410228 TGCTCTGATTATTCTTAGGCCACT 59.590 41.667 5.01 0.00 0.00 4.00
2326 2541 8.225416 TCTGATTATTCTTAGGCCACTACTAGA 58.775 37.037 5.01 0.00 0.00 2.43
2330 2545 1.337387 CTTAGGCCACTACTAGACGCC 59.663 57.143 5.01 9.08 40.03 5.68
2385 2600 2.327200 GCCGTTAGATTAGGCCAGTT 57.673 50.000 5.01 0.00 44.80 3.16
2392 2607 2.928334 AGATTAGGCCAGTTCATGCTG 58.072 47.619 5.01 0.00 36.31 4.41
2413 2628 7.508687 TGCTGTTGGATCTTAGAGCATTTATA 58.491 34.615 12.90 0.00 31.66 0.98
2414 2629 7.658982 TGCTGTTGGATCTTAGAGCATTTATAG 59.341 37.037 12.90 0.00 31.66 1.31
2415 2630 7.360776 GCTGTTGGATCTTAGAGCATTTATAGC 60.361 40.741 0.00 0.00 0.00 2.97
2416 2631 7.739825 TGTTGGATCTTAGAGCATTTATAGCT 58.260 34.615 0.00 0.00 46.82 3.32
2417 2632 7.658982 TGTTGGATCTTAGAGCATTTATAGCTG 59.341 37.037 0.00 0.00 43.58 4.24
2420 2635 6.816140 GGATCTTAGAGCATTTATAGCTGGAC 59.184 42.308 0.00 0.00 43.58 4.02
2422 2637 7.366847 TCTTAGAGCATTTATAGCTGGACTT 57.633 36.000 0.00 0.00 43.58 3.01
2423 2638 7.212976 TCTTAGAGCATTTATAGCTGGACTTG 58.787 38.462 0.00 0.00 43.58 3.16
2424 2639 4.712476 AGAGCATTTATAGCTGGACTTGG 58.288 43.478 0.00 0.00 43.58 3.61
2425 2640 3.217626 AGCATTTATAGCTGGACTTGGC 58.782 45.455 0.00 0.00 41.61 4.52
2426 2641 2.951642 GCATTTATAGCTGGACTTGGCA 59.048 45.455 0.00 0.00 0.00 4.92
2427 2642 3.381272 GCATTTATAGCTGGACTTGGCAA 59.619 43.478 0.00 0.00 0.00 4.52
2428 2643 4.142182 GCATTTATAGCTGGACTTGGCAAA 60.142 41.667 0.00 0.00 0.00 3.68
2429 2644 5.452356 GCATTTATAGCTGGACTTGGCAAAT 60.452 40.000 0.00 0.00 0.00 2.32
2430 2645 5.835113 TTTATAGCTGGACTTGGCAAATC 57.165 39.130 0.00 0.00 0.00 2.17
2431 2646 2.128771 TAGCTGGACTTGGCAAATCC 57.871 50.000 20.31 20.31 0.00 3.01
2432 2647 0.962356 AGCTGGACTTGGCAAATCCG 60.962 55.000 21.43 16.69 37.80 4.18
2433 2648 1.937546 GCTGGACTTGGCAAATCCGG 61.938 60.000 27.78 27.78 41.21 5.14
2434 2649 1.937546 CTGGACTTGGCAAATCCGGC 61.938 60.000 22.21 2.37 37.80 6.13
2435 2650 1.678970 GGACTTGGCAAATCCGGCT 60.679 57.895 12.45 0.00 37.80 5.52
2436 2651 1.657751 GGACTTGGCAAATCCGGCTC 61.658 60.000 12.45 0.00 37.80 4.70
2437 2652 1.657751 GACTTGGCAAATCCGGCTCC 61.658 60.000 0.00 0.00 37.80 4.70
2438 2653 1.379044 CTTGGCAAATCCGGCTCCT 60.379 57.895 0.00 0.00 37.80 3.69
2439 2654 0.967380 CTTGGCAAATCCGGCTCCTT 60.967 55.000 0.00 0.00 37.80 3.36
2440 2655 1.250154 TTGGCAAATCCGGCTCCTTG 61.250 55.000 0.00 0.00 37.80 3.61
2441 2656 1.678970 GGCAAATCCGGCTCCTTGT 60.679 57.895 0.00 0.00 0.00 3.16
2442 2657 0.393808 GGCAAATCCGGCTCCTTGTA 60.394 55.000 0.00 0.00 0.00 2.41
2443 2658 1.680338 GCAAATCCGGCTCCTTGTAT 58.320 50.000 0.00 0.00 0.00 2.29
2444 2659 1.334869 GCAAATCCGGCTCCTTGTATG 59.665 52.381 0.00 0.00 0.00 2.39
2452 2667 1.066430 GGCTCCTTGTATGTTCGTGGA 60.066 52.381 0.00 0.00 0.00 4.02
2457 2672 0.318869 TTGTATGTTCGTGGACGCGT 60.319 50.000 13.85 13.85 39.60 6.01
2486 2701 2.202878 CGCGGACATTGATCGGGT 60.203 61.111 0.00 0.00 33.26 5.28
2490 2705 1.472728 GCGGACATTGATCGGGTACTT 60.473 52.381 0.00 0.00 0.00 2.24
2501 2716 4.157289 TGATCGGGTACTTTCTATATCCGC 59.843 45.833 0.00 0.00 44.48 5.54
2511 2726 4.642445 TTCTATATCCGCGTCTTCACAA 57.358 40.909 4.92 0.00 0.00 3.33
2516 2731 3.334751 CGCGTCTTCACAACCGCA 61.335 61.111 0.00 0.00 46.02 5.69
2528 2743 6.646653 TCTTCACAACCGCATATCTCATATTC 59.353 38.462 0.00 0.00 0.00 1.75
2529 2744 5.237815 TCACAACCGCATATCTCATATTCC 58.762 41.667 0.00 0.00 0.00 3.01
2532 2747 4.744795 ACCGCATATCTCATATTCCCTC 57.255 45.455 0.00 0.00 0.00 4.30
2533 2748 3.452627 ACCGCATATCTCATATTCCCTCC 59.547 47.826 0.00 0.00 0.00 4.30
2545 2766 8.642869 TCTCATATTCCCTCCCCTATACTAAAT 58.357 37.037 0.00 0.00 0.00 1.40
2549 2770 6.952605 TTCCCTCCCCTATACTAAATCATG 57.047 41.667 0.00 0.00 0.00 3.07
2559 2780 7.011950 CCCTATACTAAATCATGCAACGTTGAA 59.988 37.037 31.62 22.98 0.00 2.69
2587 2808 3.592898 ACGTAGATCATGTGCAGACAA 57.407 42.857 0.00 0.00 35.11 3.18
2592 2813 4.761235 AGATCATGTGCAGACAAACAAG 57.239 40.909 0.00 0.00 35.11 3.16
2623 2844 5.491070 TCGGTTCATCAAAAGATCACATCT 58.509 37.500 0.00 0.00 42.61 2.90
2624 2845 6.639563 TCGGTTCATCAAAAGATCACATCTA 58.360 36.000 0.00 0.00 39.08 1.98
2625 2846 6.758416 TCGGTTCATCAAAAGATCACATCTAG 59.242 38.462 0.00 0.00 39.08 2.43
2671 2892 8.436778 AGTTCACATAATACACATAATAGGGCA 58.563 33.333 0.00 0.00 0.00 5.36
2675 2896 8.097038 CACATAATACACATAATAGGGCAGACT 58.903 37.037 0.00 0.00 0.00 3.24
2733 2954 1.738099 CTTCACCACTTCCTCGCCG 60.738 63.158 0.00 0.00 0.00 6.46
2735 2956 4.003788 CACCACTTCCTCGCCGGT 62.004 66.667 1.90 0.00 0.00 5.28
2748 2970 2.434331 CCGGTCCTTTGCCTTCCA 59.566 61.111 0.00 0.00 0.00 3.53
2775 2997 2.701780 CGCAGCTGTAGGAGTCCGT 61.702 63.158 16.64 0.00 0.00 4.69
2833 3055 0.384309 CATCGTCGGAGGAATCGGAA 59.616 55.000 4.32 0.00 0.00 4.30
2848 3070 1.202486 TCGGAAATGACGATGTAGCCC 60.202 52.381 0.00 0.00 35.12 5.19
2855 3077 0.108138 GACGATGTAGCCCTGCAAGT 60.108 55.000 0.00 0.00 0.00 3.16
2869 3091 4.107051 AAGTACCGGACGACGCGG 62.107 66.667 9.46 11.66 42.52 6.46
2878 3100 2.279918 ACGACGCGGTCTTGCTTT 60.280 55.556 12.47 0.00 0.00 3.51
2879 3101 1.828331 GACGACGCGGTCTTGCTTTT 61.828 55.000 12.47 0.00 34.09 2.27
2880 3102 1.278637 CGACGCGGTCTTGCTTTTT 59.721 52.632 12.47 0.00 0.00 1.94
2909 3131 7.959658 TTGAAAGGAACATCATGTATTCCAT 57.040 32.000 20.20 10.81 43.75 3.41
2910 3132 9.473007 TTTGAAAGGAACATCATGTATTCCATA 57.527 29.630 20.20 7.15 43.75 2.74
2915 3137 9.561069 AAGGAACATCATGTATTCCATAACTAC 57.439 33.333 20.20 0.00 43.75 2.73
2916 3138 8.938883 AGGAACATCATGTATTCCATAACTACT 58.061 33.333 20.20 0.00 43.75 2.57
2922 3144 9.712305 ATCATGTATTCCATAACTACTACTTGC 57.288 33.333 0.00 0.00 30.71 4.01
2924 3146 6.509656 TGTATTCCATAACTACTACTTGCCG 58.490 40.000 0.00 0.00 0.00 5.69
2925 3147 4.395959 TTCCATAACTACTACTTGCCGG 57.604 45.455 0.00 0.00 0.00 6.13
2926 3148 2.101917 TCCATAACTACTACTTGCCGGC 59.898 50.000 22.73 22.73 0.00 6.13
2927 3149 2.159014 CCATAACTACTACTTGCCGGCA 60.159 50.000 29.03 29.03 0.00 5.69
2930 3152 0.246635 ACTACTACTTGCCGGCAGTG 59.753 55.000 30.75 26.78 0.00 3.66
2931 3153 0.246635 CTACTACTTGCCGGCAGTGT 59.753 55.000 30.75 30.53 0.00 3.55
2933 3155 1.005037 CTACTTGCCGGCAGTGTGA 60.005 57.895 33.19 19.61 0.00 3.58
2934 3156 1.291877 CTACTTGCCGGCAGTGTGAC 61.292 60.000 33.19 6.02 0.00 3.67
2936 3158 2.124529 TTGCCGGCAGTGTGACAA 60.125 55.556 30.75 9.52 0.00 3.18
2937 3159 2.121564 CTTGCCGGCAGTGTGACAAG 62.122 60.000 30.75 17.69 0.00 3.16
2938 3160 4.030452 GCCGGCAGTGTGACAAGC 62.030 66.667 24.80 3.00 0.00 4.01
2940 3162 1.005037 CCGGCAGTGTGACAAGCTA 60.005 57.895 10.45 0.00 0.00 3.32
2941 3163 1.291877 CCGGCAGTGTGACAAGCTAC 61.292 60.000 10.45 0.00 0.00 3.58
2942 3164 0.599991 CGGCAGTGTGACAAGCTACA 60.600 55.000 10.45 0.00 0.00 2.74
2943 3165 1.593196 GGCAGTGTGACAAGCTACAA 58.407 50.000 10.45 0.00 0.00 2.41
2945 3167 2.031682 GGCAGTGTGACAAGCTACAAAG 60.032 50.000 10.45 0.00 0.00 2.77
2948 3170 4.438744 GCAGTGTGACAAGCTACAAAGTTT 60.439 41.667 4.28 0.00 0.00 2.66
2949 3171 5.030295 CAGTGTGACAAGCTACAAAGTTTG 58.970 41.667 14.13 14.13 46.21 2.93
2959 3181 7.336975 CAAGCTACAAAGTTTGTTACAAATGC 58.663 34.615 25.35 16.57 42.22 3.56
2960 3182 6.568869 AGCTACAAAGTTTGTTACAAATGCA 58.431 32.000 25.35 4.40 42.22 3.96
2961 3183 6.697019 AGCTACAAAGTTTGTTACAAATGCAG 59.303 34.615 25.35 14.23 42.22 4.41
2963 3185 5.971763 ACAAAGTTTGTTACAAATGCAGGA 58.028 33.333 15.58 0.00 42.22 3.86
2967 3189 8.397148 CAAAGTTTGTTACAAATGCAGGAAAAT 58.603 29.630 13.84 0.00 0.00 1.82
2969 3191 6.482973 AGTTTGTTACAAATGCAGGAAAATGG 59.517 34.615 13.84 0.00 0.00 3.16
2970 3192 4.314121 TGTTACAAATGCAGGAAAATGGC 58.686 39.130 0.00 0.00 0.00 4.40
2971 3193 2.477845 ACAAATGCAGGAAAATGGCC 57.522 45.000 0.00 0.00 0.00 5.36
2972 3194 1.698532 ACAAATGCAGGAAAATGGCCA 59.301 42.857 8.56 8.56 0.00 5.36
2974 3196 2.477845 AATGCAGGAAAATGGCCAAC 57.522 45.000 10.96 1.30 0.00 3.77
2975 3197 0.614812 ATGCAGGAAAATGGCCAACC 59.385 50.000 10.96 11.57 0.00 3.77
2976 3198 1.296392 GCAGGAAAATGGCCAACCC 59.704 57.895 10.96 8.84 33.59 4.11
2984 3206 4.517663 TGGCCAACCCAGATGTTG 57.482 55.556 0.61 0.00 44.12 3.33
2985 3207 1.849832 TGGCCAACCCAGATGTTGA 59.150 52.632 0.61 0.00 46.77 3.18
2986 3208 0.187117 TGGCCAACCCAGATGTTGAA 59.813 50.000 0.61 0.00 46.77 2.69
2987 3209 1.337118 GGCCAACCCAGATGTTGAAA 58.663 50.000 0.00 0.00 46.77 2.69
2988 3210 1.901833 GGCCAACCCAGATGTTGAAAT 59.098 47.619 0.00 0.00 46.77 2.17
2989 3211 2.302733 GGCCAACCCAGATGTTGAAATT 59.697 45.455 0.00 0.00 46.77 1.82
2990 3212 3.328505 GCCAACCCAGATGTTGAAATTG 58.671 45.455 5.53 0.00 46.77 2.32
2991 3213 3.328505 CCAACCCAGATGTTGAAATTGC 58.671 45.455 5.53 0.00 46.77 3.56
2992 3214 3.328505 CAACCCAGATGTTGAAATTGCC 58.671 45.455 0.00 0.00 46.77 4.52
2993 3215 2.607499 ACCCAGATGTTGAAATTGCCA 58.393 42.857 0.00 0.00 0.00 4.92
2994 3216 3.175594 ACCCAGATGTTGAAATTGCCAT 58.824 40.909 0.00 0.00 0.00 4.40
2995 3217 3.583966 ACCCAGATGTTGAAATTGCCATT 59.416 39.130 0.00 0.00 0.00 3.16
2996 3218 4.186159 CCCAGATGTTGAAATTGCCATTC 58.814 43.478 0.00 0.00 0.00 2.67
2997 3219 4.186159 CCAGATGTTGAAATTGCCATTCC 58.814 43.478 0.00 0.00 0.00 3.01
2998 3220 4.186159 CAGATGTTGAAATTGCCATTCCC 58.814 43.478 0.00 0.00 0.00 3.97
2999 3221 4.081309 CAGATGTTGAAATTGCCATTCCCT 60.081 41.667 0.00 0.00 0.00 4.20
3000 3222 5.127519 CAGATGTTGAAATTGCCATTCCCTA 59.872 40.000 0.00 0.00 0.00 3.53
3001 3223 5.721000 AGATGTTGAAATTGCCATTCCCTAA 59.279 36.000 0.00 0.00 0.00 2.69
3002 3224 6.384886 AGATGTTGAAATTGCCATTCCCTAAT 59.615 34.615 0.00 0.00 0.00 1.73
3003 3225 6.371595 TGTTGAAATTGCCATTCCCTAATT 57.628 33.333 0.00 0.00 0.00 1.40
3004 3226 6.405538 TGTTGAAATTGCCATTCCCTAATTC 58.594 36.000 0.00 0.00 0.00 2.17
3005 3227 6.013898 TGTTGAAATTGCCATTCCCTAATTCA 60.014 34.615 0.00 0.00 0.00 2.57
3006 3228 6.617782 TGAAATTGCCATTCCCTAATTCAA 57.382 33.333 0.00 0.00 0.00 2.69
3007 3229 7.197901 TGAAATTGCCATTCCCTAATTCAAT 57.802 32.000 0.00 0.00 31.83 2.57
3008 3230 7.631933 TGAAATTGCCATTCCCTAATTCAATT 58.368 30.769 0.00 0.00 37.33 2.32
3009 3231 7.769970 TGAAATTGCCATTCCCTAATTCAATTC 59.230 33.333 0.00 0.00 36.10 2.17
3010 3232 5.612725 TTGCCATTCCCTAATTCAATTCC 57.387 39.130 0.00 0.00 0.00 3.01
3011 3233 4.882559 TGCCATTCCCTAATTCAATTCCT 58.117 39.130 0.00 0.00 0.00 3.36
3012 3234 6.024563 TGCCATTCCCTAATTCAATTCCTA 57.975 37.500 0.00 0.00 0.00 2.94
3013 3235 6.070656 TGCCATTCCCTAATTCAATTCCTAG 58.929 40.000 0.00 0.00 0.00 3.02
3014 3236 5.047731 GCCATTCCCTAATTCAATTCCTAGC 60.048 44.000 0.00 0.00 0.00 3.42
3015 3237 5.182001 CCATTCCCTAATTCAATTCCTAGCG 59.818 44.000 0.00 0.00 0.00 4.26
3016 3238 3.740115 TCCCTAATTCAATTCCTAGCGC 58.260 45.455 0.00 0.00 0.00 5.92
3017 3239 3.135712 TCCCTAATTCAATTCCTAGCGCA 59.864 43.478 11.47 0.00 0.00 6.09
3018 3240 3.499918 CCCTAATTCAATTCCTAGCGCAG 59.500 47.826 11.47 4.88 0.00 5.18
3032 3254 4.268939 GCAGCCAAAGTGTGCGCA 62.269 61.111 5.66 5.66 0.00 6.09
3033 3255 2.050714 CAGCCAAAGTGTGCGCAG 60.051 61.111 12.22 0.00 0.00 5.18
3048 3270 2.763930 CGCAGCTACGTTACAAGTTC 57.236 50.000 0.00 0.00 0.00 3.01
3049 3271 2.325761 CGCAGCTACGTTACAAGTTCT 58.674 47.619 0.00 0.00 0.00 3.01
3050 3272 2.729882 CGCAGCTACGTTACAAGTTCTT 59.270 45.455 0.00 0.00 0.00 2.52
3051 3273 3.421826 CGCAGCTACGTTACAAGTTCTTG 60.422 47.826 10.50 10.50 0.00 3.02
3052 3274 3.739300 GCAGCTACGTTACAAGTTCTTGA 59.261 43.478 17.75 1.15 0.00 3.02
3053 3275 4.210537 GCAGCTACGTTACAAGTTCTTGAA 59.789 41.667 17.75 6.48 0.00 2.69
3054 3276 5.667175 CAGCTACGTTACAAGTTCTTGAAC 58.333 41.667 17.75 14.82 0.00 3.18
3055 3277 5.233476 CAGCTACGTTACAAGTTCTTGAACA 59.767 40.000 17.75 1.92 0.00 3.18
3056 3278 5.813672 AGCTACGTTACAAGTTCTTGAACAA 59.186 36.000 17.75 7.08 0.00 2.83
3057 3279 6.314400 AGCTACGTTACAAGTTCTTGAACAAA 59.686 34.615 17.75 5.35 0.00 2.83
3058 3280 6.410048 GCTACGTTACAAGTTCTTGAACAAAC 59.590 38.462 17.75 13.60 0.00 2.93
3059 3281 6.243811 ACGTTACAAGTTCTTGAACAAACA 57.756 33.333 17.75 0.00 0.00 2.83
3060 3282 6.848451 ACGTTACAAGTTCTTGAACAAACAT 58.152 32.000 17.75 4.37 0.00 2.71
3061 3283 7.309920 ACGTTACAAGTTCTTGAACAAACATT 58.690 30.769 17.75 0.00 0.00 2.71
3062 3284 7.483691 ACGTTACAAGTTCTTGAACAAACATTC 59.516 33.333 17.75 1.16 0.00 2.67
3063 3285 7.483375 CGTTACAAGTTCTTGAACAAACATTCA 59.517 33.333 17.75 0.00 36.80 2.57
3064 3286 9.134734 GTTACAAGTTCTTGAACAAACATTCAA 57.865 29.630 17.75 1.36 44.40 2.69
3065 3287 7.581011 ACAAGTTCTTGAACAAACATTCAAC 57.419 32.000 17.75 0.00 42.32 3.18
3066 3288 7.378181 ACAAGTTCTTGAACAAACATTCAACT 58.622 30.769 17.75 0.00 42.32 3.16
3067 3289 7.872483 ACAAGTTCTTGAACAAACATTCAACTT 59.128 29.630 17.75 0.00 42.32 2.66
3068 3290 8.711457 CAAGTTCTTGAACAAACATTCAACTTT 58.289 29.630 14.80 0.00 42.32 2.66
3069 3291 9.921637 AAGTTCTTGAACAAACATTCAACTTTA 57.078 25.926 14.80 0.00 42.32 1.85
3070 3292 9.353999 AGTTCTTGAACAAACATTCAACTTTAC 57.646 29.630 14.80 0.00 42.32 2.01
3071 3293 9.134734 GTTCTTGAACAAACATTCAACTTTACA 57.865 29.630 8.45 0.00 42.32 2.41
3072 3294 9.868277 TTCTTGAACAAACATTCAACTTTACAT 57.132 25.926 0.00 0.00 42.32 2.29
3073 3295 9.515020 TCTTGAACAAACATTCAACTTTACATC 57.485 29.630 0.00 0.00 42.32 3.06
3074 3296 9.299963 CTTGAACAAACATTCAACTTTACATCA 57.700 29.630 0.00 0.00 42.32 3.07
3075 3297 9.814899 TTGAACAAACATTCAACTTTACATCAT 57.185 25.926 0.00 0.00 42.32 2.45
3076 3298 9.462174 TGAACAAACATTCAACTTTACATCATC 57.538 29.630 0.00 0.00 35.65 2.92
3077 3299 9.462174 GAACAAACATTCAACTTTACATCATCA 57.538 29.630 0.00 0.00 0.00 3.07
3078 3300 9.814899 AACAAACATTCAACTTTACATCATCAA 57.185 25.926 0.00 0.00 0.00 2.57
3079 3301 9.467258 ACAAACATTCAACTTTACATCATCAAG 57.533 29.630 0.00 0.00 0.00 3.02
3080 3302 9.467258 CAAACATTCAACTTTACATCATCAAGT 57.533 29.630 0.00 0.00 31.90 3.16
3081 3303 9.467258 AAACATTCAACTTTACATCATCAAGTG 57.533 29.630 0.00 0.00 31.00 3.16
3082 3304 7.086376 ACATTCAACTTTACATCATCAAGTGC 58.914 34.615 0.00 0.00 31.00 4.40
3083 3305 6.631971 TTCAACTTTACATCATCAAGTGCA 57.368 33.333 0.00 0.00 31.00 4.57
3084 3306 6.631971 TCAACTTTACATCATCAAGTGCAA 57.368 33.333 0.00 0.00 31.00 4.08
3085 3307 6.437928 TCAACTTTACATCATCAAGTGCAAC 58.562 36.000 0.00 0.00 31.00 4.17
3100 3322 4.632538 GTGCAACTCTTAACTGGTGTTT 57.367 40.909 0.00 0.00 37.59 2.83
3101 3323 4.993905 GTGCAACTCTTAACTGGTGTTTT 58.006 39.130 0.00 0.00 37.59 2.43
3102 3324 6.126568 GTGCAACTCTTAACTGGTGTTTTA 57.873 37.500 0.00 0.00 37.59 1.52
3103 3325 6.735130 GTGCAACTCTTAACTGGTGTTTTAT 58.265 36.000 0.00 0.00 37.59 1.40
3104 3326 7.200455 GTGCAACTCTTAACTGGTGTTTTATT 58.800 34.615 0.00 0.00 37.59 1.40
3105 3327 7.704899 GTGCAACTCTTAACTGGTGTTTTATTT 59.295 33.333 0.00 0.00 37.59 1.40
3106 3328 7.918562 TGCAACTCTTAACTGGTGTTTTATTTC 59.081 33.333 0.00 0.00 37.59 2.17
3107 3329 7.381408 GCAACTCTTAACTGGTGTTTTATTTCC 59.619 37.037 0.00 0.00 37.59 3.13
3108 3330 8.630037 CAACTCTTAACTGGTGTTTTATTTCCT 58.370 33.333 0.00 0.00 37.59 3.36
3109 3331 8.166422 ACTCTTAACTGGTGTTTTATTTCCTG 57.834 34.615 0.00 0.00 37.59 3.86
3110 3332 7.996644 ACTCTTAACTGGTGTTTTATTTCCTGA 59.003 33.333 0.00 0.00 37.59 3.86
3111 3333 8.754991 TCTTAACTGGTGTTTTATTTCCTGAA 57.245 30.769 0.00 0.00 37.59 3.02
3112 3334 9.191479 TCTTAACTGGTGTTTTATTTCCTGAAA 57.809 29.630 0.00 0.00 37.59 2.69
3113 3335 9.810545 CTTAACTGGTGTTTTATTTCCTGAAAA 57.189 29.630 0.00 0.00 37.59 2.29
3115 3337 8.716646 AACTGGTGTTTTATTTCCTGAAAAAG 57.283 30.769 0.00 0.00 31.06 2.27
3116 3338 8.073467 ACTGGTGTTTTATTTCCTGAAAAAGA 57.927 30.769 0.00 0.00 33.56 2.52
3117 3339 8.197439 ACTGGTGTTTTATTTCCTGAAAAAGAG 58.803 33.333 0.00 0.00 33.56 2.85
3118 3340 6.983890 TGGTGTTTTATTTCCTGAAAAAGAGC 59.016 34.615 0.00 0.00 35.60 4.09
3119 3341 7.147742 TGGTGTTTTATTTCCTGAAAAAGAGCT 60.148 33.333 0.00 0.00 35.86 4.09
3120 3342 7.382488 GGTGTTTTATTTCCTGAAAAAGAGCTC 59.618 37.037 5.27 5.27 33.58 4.09
3121 3343 7.382488 GTGTTTTATTTCCTGAAAAAGAGCTCC 59.618 37.037 10.93 0.00 33.56 4.70
3122 3344 5.880054 TTATTTCCTGAAAAAGAGCTCCG 57.120 39.130 10.93 0.00 33.56 4.63
3123 3345 3.485463 TTTCCTGAAAAAGAGCTCCGA 57.515 42.857 10.93 0.00 0.00 4.55
3124 3346 2.751166 TCCTGAAAAAGAGCTCCGAG 57.249 50.000 10.93 0.00 0.00 4.63
3125 3347 1.971357 TCCTGAAAAAGAGCTCCGAGT 59.029 47.619 10.93 0.00 0.00 4.18
3126 3348 2.368875 TCCTGAAAAAGAGCTCCGAGTT 59.631 45.455 10.93 0.00 0.00 3.01
3127 3349 2.739379 CCTGAAAAAGAGCTCCGAGTTC 59.261 50.000 10.93 9.78 0.00 3.01
3128 3350 3.393800 CTGAAAAAGAGCTCCGAGTTCA 58.606 45.455 10.93 13.65 0.00 3.18
3129 3351 3.393800 TGAAAAAGAGCTCCGAGTTCAG 58.606 45.455 10.93 0.00 0.00 3.02
3130 3352 1.802069 AAAAGAGCTCCGAGTTCAGC 58.198 50.000 10.93 0.00 35.73 4.26
3132 3354 1.840737 AAGAGCTCCGAGTTCAGCTA 58.159 50.000 10.93 0.00 46.31 3.32
3133 3355 1.388547 AGAGCTCCGAGTTCAGCTAG 58.611 55.000 10.93 0.00 46.31 3.42
3134 3356 1.065053 AGAGCTCCGAGTTCAGCTAGA 60.065 52.381 10.93 0.00 46.31 2.43
3135 3357 1.953686 GAGCTCCGAGTTCAGCTAGAT 59.046 52.381 0.87 0.00 46.31 1.98
3136 3358 2.360801 GAGCTCCGAGTTCAGCTAGATT 59.639 50.000 0.87 0.00 46.31 2.40
3137 3359 3.556999 AGCTCCGAGTTCAGCTAGATTA 58.443 45.455 0.00 0.00 44.45 1.75
3138 3360 4.148838 AGCTCCGAGTTCAGCTAGATTAT 58.851 43.478 0.00 0.00 44.45 1.28
3139 3361 5.317808 AGCTCCGAGTTCAGCTAGATTATA 58.682 41.667 0.00 0.00 44.45 0.98
3140 3362 5.770663 AGCTCCGAGTTCAGCTAGATTATAA 59.229 40.000 0.00 0.00 44.45 0.98
3141 3363 6.072175 AGCTCCGAGTTCAGCTAGATTATAAG 60.072 42.308 0.00 0.00 44.45 1.73
3142 3364 6.015027 TCCGAGTTCAGCTAGATTATAAGC 57.985 41.667 0.00 0.00 39.08 3.09
3144 3366 6.265649 TCCGAGTTCAGCTAGATTATAAGCTT 59.734 38.462 8.81 3.48 46.82 3.74
3145 3367 6.584563 CCGAGTTCAGCTAGATTATAAGCTTC 59.415 42.308 8.81 1.86 46.82 3.86
3146 3368 7.142021 CGAGTTCAGCTAGATTATAAGCTTCA 58.858 38.462 8.81 0.00 46.82 3.02
3147 3369 7.325821 CGAGTTCAGCTAGATTATAAGCTTCAG 59.674 40.741 8.81 2.40 46.82 3.02
3148 3370 8.017418 AGTTCAGCTAGATTATAAGCTTCAGT 57.983 34.615 8.81 0.00 46.82 3.41
3149 3371 8.482128 AGTTCAGCTAGATTATAAGCTTCAGTT 58.518 33.333 8.81 0.00 46.82 3.16
3150 3372 8.547069 GTTCAGCTAGATTATAAGCTTCAGTTG 58.453 37.037 8.81 9.38 46.82 3.16
3151 3373 8.011844 TCAGCTAGATTATAAGCTTCAGTTGA 57.988 34.615 8.81 11.44 46.82 3.18
3152 3374 8.478066 TCAGCTAGATTATAAGCTTCAGTTGAA 58.522 33.333 14.13 3.23 46.82 2.69
3153 3375 9.102757 CAGCTAGATTATAAGCTTCAGTTGAAA 57.897 33.333 8.81 0.00 46.82 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 128 0.250081 GGAACTGCCTCGATCATCCC 60.250 60.000 0.00 0.00 0.00 3.85
174 179 0.971386 CATCAAAGCCCAACTGCCTT 59.029 50.000 0.00 0.00 0.00 4.35
186 191 1.439353 CCGTCCCGATGGCATCAAAG 61.439 60.000 25.88 13.98 0.00 2.77
204 209 4.521062 ATGAGCAGGAGACGCGCC 62.521 66.667 5.73 0.00 35.50 6.53
205 210 2.510238 AATGAGCAGGAGACGCGC 60.510 61.111 5.73 0.00 35.50 6.86
206 211 1.416813 GACAATGAGCAGGAGACGCG 61.417 60.000 3.53 3.53 35.50 6.01
207 212 1.086634 GGACAATGAGCAGGAGACGC 61.087 60.000 0.00 0.00 0.00 5.19
208 213 0.803768 CGGACAATGAGCAGGAGACG 60.804 60.000 0.00 0.00 0.00 4.18
209 214 1.086634 GCGGACAATGAGCAGGAGAC 61.087 60.000 0.00 0.00 0.00 3.36
246 264 1.669760 CGTGCCGCCTTTTGGACTA 60.670 57.895 0.00 0.00 44.07 2.59
247 265 2.978010 CGTGCCGCCTTTTGGACT 60.978 61.111 0.00 0.00 44.07 3.85
374 394 5.402997 TGCAATGATTTAATGCACCTTGA 57.597 34.783 0.00 0.00 44.52 3.02
589 609 2.389715 CGGTGATACTCCCTCCTTTCT 58.610 52.381 0.00 0.00 0.00 2.52
593 613 0.635009 TTCCGGTGATACTCCCTCCT 59.365 55.000 0.00 0.00 0.00 3.69
594 614 1.492764 TTTCCGGTGATACTCCCTCC 58.507 55.000 0.00 0.00 0.00 4.30
595 615 2.966516 AGATTTCCGGTGATACTCCCTC 59.033 50.000 0.00 0.00 0.00 4.30
596 616 2.966516 GAGATTTCCGGTGATACTCCCT 59.033 50.000 0.00 0.00 0.00 4.20
597 617 2.698797 TGAGATTTCCGGTGATACTCCC 59.301 50.000 0.00 0.00 0.00 4.30
598 618 4.310769 CATGAGATTTCCGGTGATACTCC 58.689 47.826 0.00 0.00 0.00 3.85
599 619 3.743396 GCATGAGATTTCCGGTGATACTC 59.257 47.826 0.00 6.43 0.00 2.59
600 620 3.733337 GCATGAGATTTCCGGTGATACT 58.267 45.455 0.00 0.00 0.00 2.12
601 621 2.476619 CGCATGAGATTTCCGGTGATAC 59.523 50.000 0.00 0.00 0.00 2.24
682 705 0.249911 GGGACAAGTGTCGAGTTGCT 60.250 55.000 5.40 0.00 45.65 3.91
686 709 0.031721 GAACGGGACAAGTGTCGAGT 59.968 55.000 5.40 5.22 45.65 4.18
687 710 0.314302 AGAACGGGACAAGTGTCGAG 59.686 55.000 5.40 4.64 45.65 4.04
688 711 0.313043 GAGAACGGGACAAGTGTCGA 59.687 55.000 5.40 0.00 45.65 4.20
744 767 4.256110 CATGTGATGAGCTTACCTGTTCA 58.744 43.478 0.00 0.00 0.00 3.18
887 923 3.130160 CTCGAAAGGCAGGCAGGC 61.130 66.667 0.00 0.00 44.61 4.85
888 924 0.890996 AAACTCGAAAGGCAGGCAGG 60.891 55.000 0.00 0.00 0.00 4.85
889 925 0.954452 AAAACTCGAAAGGCAGGCAG 59.046 50.000 0.00 0.00 0.00 4.85
890 926 0.667993 CAAAACTCGAAAGGCAGGCA 59.332 50.000 0.00 0.00 0.00 4.75
891 927 0.951558 TCAAAACTCGAAAGGCAGGC 59.048 50.000 0.00 0.00 0.00 4.85
892 928 1.537202 CCTCAAAACTCGAAAGGCAGG 59.463 52.381 0.00 0.00 0.00 4.85
893 929 1.537202 CCCTCAAAACTCGAAAGGCAG 59.463 52.381 0.00 0.00 0.00 4.85
894 930 1.142060 TCCCTCAAAACTCGAAAGGCA 59.858 47.619 0.00 0.00 0.00 4.75
895 931 1.892209 TCCCTCAAAACTCGAAAGGC 58.108 50.000 0.00 0.00 0.00 4.35
896 932 5.009610 TCAAAATCCCTCAAAACTCGAAAGG 59.990 40.000 0.00 0.00 0.00 3.11
897 933 5.915196 GTCAAAATCCCTCAAAACTCGAAAG 59.085 40.000 0.00 0.00 0.00 2.62
898 934 5.504994 CGTCAAAATCCCTCAAAACTCGAAA 60.505 40.000 0.00 0.00 0.00 3.46
899 935 4.024387 CGTCAAAATCCCTCAAAACTCGAA 60.024 41.667 0.00 0.00 0.00 3.71
900 936 3.496884 CGTCAAAATCCCTCAAAACTCGA 59.503 43.478 0.00 0.00 0.00 4.04
901 937 3.250040 ACGTCAAAATCCCTCAAAACTCG 59.750 43.478 0.00 0.00 0.00 4.18
902 938 4.515567 AGACGTCAAAATCCCTCAAAACTC 59.484 41.667 19.50 0.00 0.00 3.01
903 939 4.275936 CAGACGTCAAAATCCCTCAAAACT 59.724 41.667 19.50 0.00 0.00 2.66
904 940 4.537015 CAGACGTCAAAATCCCTCAAAAC 58.463 43.478 19.50 0.00 0.00 2.43
905 941 3.004315 GCAGACGTCAAAATCCCTCAAAA 59.996 43.478 19.50 0.00 0.00 2.44
933 969 2.396608 GGGGTTCCCTCTACTCTAACC 58.603 57.143 7.87 0.00 41.34 2.85
958 1002 1.448540 CTGCGTACTTGCCTCAGGG 60.449 63.158 0.00 0.00 0.00 4.45
1282 1425 4.681978 ACAGAAGACGGCGGCACC 62.682 66.667 18.30 5.77 0.00 5.01
1296 1439 1.273324 ACTAGGACCCCCAGAAGACAG 60.273 57.143 0.00 0.00 33.88 3.51
1307 1450 1.569653 ACCACTGCTTACTAGGACCC 58.430 55.000 0.00 0.00 0.00 4.46
1309 1452 4.004196 ACAAACCACTGCTTACTAGGAC 57.996 45.455 0.00 0.00 0.00 3.85
1310 1453 5.811796 TTACAAACCACTGCTTACTAGGA 57.188 39.130 0.00 0.00 0.00 2.94
1317 1468 5.137551 AGTACCATTTACAAACCACTGCTT 58.862 37.500 0.00 0.00 0.00 3.91
1319 1470 5.219633 CAAGTACCATTTACAAACCACTGC 58.780 41.667 0.00 0.00 0.00 4.40
1327 1478 5.990386 TCGTACAAGCAAGTACCATTTACAA 59.010 36.000 11.59 0.00 40.94 2.41
1422 1598 2.666098 GCACCTTCCGGAAGCCCTA 61.666 63.158 34.54 4.75 37.11 3.53
1583 1768 2.404566 TATTGGCCACCACGTGCTGT 62.405 55.000 3.88 0.00 30.78 4.40
1615 1800 1.715785 CTCATCCTCTTCCTCCTCCC 58.284 60.000 0.00 0.00 0.00 4.30
1658 1843 2.507992 CGCAGCCTCTGAACCTCG 60.508 66.667 0.00 0.00 32.44 4.63
2318 2533 1.086634 GGTCGACGGCGTCTAGTAGT 61.087 60.000 33.90 0.00 38.98 2.73
2319 2534 1.640604 GGTCGACGGCGTCTAGTAG 59.359 63.158 33.90 20.03 38.98 2.57
2320 2535 2.167219 CGGTCGACGGCGTCTAGTA 61.167 63.158 33.90 16.22 39.42 1.82
2330 2545 2.248274 GAATTTTGGGCCGGTCGACG 62.248 60.000 9.92 4.95 43.80 5.12
2342 2557 3.676091 GGCGACTGACCGAATTTTG 57.324 52.632 0.00 0.00 0.00 2.44
2384 2599 4.194640 GCTCTAAGATCCAACAGCATGAA 58.805 43.478 0.00 0.00 39.69 2.57
2385 2600 3.198417 TGCTCTAAGATCCAACAGCATGA 59.802 43.478 0.00 0.00 39.69 3.07
2392 2607 7.118971 CCAGCTATAAATGCTCTAAGATCCAAC 59.881 40.741 0.00 0.00 38.92 3.77
2413 2628 0.962356 CGGATTTGCCAAGTCCAGCT 60.962 55.000 17.84 0.00 35.94 4.24
2414 2629 1.508088 CGGATTTGCCAAGTCCAGC 59.492 57.895 17.84 0.00 35.94 4.85
2415 2630 1.937546 GCCGGATTTGCCAAGTCCAG 61.938 60.000 17.84 8.61 35.94 3.86
2416 2631 1.976474 GCCGGATTTGCCAAGTCCA 60.976 57.895 17.84 0.00 35.94 4.02
2417 2632 1.657751 GAGCCGGATTTGCCAAGTCC 61.658 60.000 5.05 8.84 35.94 3.85
2420 2635 0.967380 AAGGAGCCGGATTTGCCAAG 60.967 55.000 5.05 0.00 35.94 3.61
2422 2637 1.678635 CAAGGAGCCGGATTTGCCA 60.679 57.895 5.05 0.00 35.94 4.92
2423 2638 0.393808 TACAAGGAGCCGGATTTGCC 60.394 55.000 5.05 0.00 0.00 4.52
2424 2639 1.334869 CATACAAGGAGCCGGATTTGC 59.665 52.381 5.05 0.00 0.00 3.68
2425 2640 2.643551 ACATACAAGGAGCCGGATTTG 58.356 47.619 5.05 3.54 0.00 2.32
2426 2641 3.279434 GAACATACAAGGAGCCGGATTT 58.721 45.455 5.05 0.00 0.00 2.17
2427 2642 2.741878 CGAACATACAAGGAGCCGGATT 60.742 50.000 5.05 0.00 0.00 3.01
2428 2643 1.202533 CGAACATACAAGGAGCCGGAT 60.203 52.381 5.05 0.00 0.00 4.18
2429 2644 0.174845 CGAACATACAAGGAGCCGGA 59.825 55.000 5.05 0.00 0.00 5.14
2430 2645 0.108329 ACGAACATACAAGGAGCCGG 60.108 55.000 0.00 0.00 0.00 6.13
2431 2646 0.999406 CACGAACATACAAGGAGCCG 59.001 55.000 0.00 0.00 0.00 5.52
2432 2647 1.066430 TCCACGAACATACAAGGAGCC 60.066 52.381 0.00 0.00 0.00 4.70
2433 2648 2.000447 GTCCACGAACATACAAGGAGC 59.000 52.381 0.00 0.00 0.00 4.70
2434 2649 2.259618 CGTCCACGAACATACAAGGAG 58.740 52.381 0.00 0.00 43.02 3.69
2435 2650 1.670674 GCGTCCACGAACATACAAGGA 60.671 52.381 2.58 0.00 43.02 3.36
2436 2651 0.719465 GCGTCCACGAACATACAAGG 59.281 55.000 2.58 0.00 43.02 3.61
2437 2652 0.365523 CGCGTCCACGAACATACAAG 59.634 55.000 2.58 0.00 43.02 3.16
2438 2653 0.318869 ACGCGTCCACGAACATACAA 60.319 50.000 5.58 0.00 43.02 2.41
2439 2654 0.730155 GACGCGTCCACGAACATACA 60.730 55.000 28.61 0.00 43.02 2.29
2440 2655 1.986154 GACGCGTCCACGAACATAC 59.014 57.895 28.61 0.00 43.02 2.39
2441 2656 4.463597 GACGCGTCCACGAACATA 57.536 55.556 28.61 0.00 43.02 2.29
2469 2684 1.066752 TACCCGATCAATGTCCGCG 59.933 57.895 0.00 0.00 0.00 6.46
2477 2692 5.336213 GCGGATATAGAAAGTACCCGATCAA 60.336 44.000 0.00 0.00 37.87 2.57
2486 2701 5.297527 TGTGAAGACGCGGATATAGAAAGTA 59.702 40.000 12.47 0.00 0.00 2.24
2490 2705 4.357142 GTTGTGAAGACGCGGATATAGAA 58.643 43.478 12.47 0.00 0.00 2.10
2501 2716 2.535984 GAGATATGCGGTTGTGAAGACG 59.464 50.000 0.00 0.00 0.00 4.18
2511 2726 3.452627 GGAGGGAATATGAGATATGCGGT 59.547 47.826 0.00 0.00 0.00 5.68
2516 2731 8.383434 AGTATAGGGGAGGGAATATGAGATAT 57.617 38.462 0.00 0.00 0.00 1.63
2528 2743 4.536090 TGCATGATTTAGTATAGGGGAGGG 59.464 45.833 0.00 0.00 0.00 4.30
2529 2744 5.762179 TGCATGATTTAGTATAGGGGAGG 57.238 43.478 0.00 0.00 0.00 4.30
2532 2747 5.305585 ACGTTGCATGATTTAGTATAGGGG 58.694 41.667 0.00 0.00 0.00 4.79
2533 2748 6.481976 TCAACGTTGCATGATTTAGTATAGGG 59.518 38.462 23.47 0.00 0.00 3.53
2568 2789 3.679502 TGTTTGTCTGCACATGATCTACG 59.320 43.478 0.00 0.00 30.55 3.51
2572 2793 4.224433 CACTTGTTTGTCTGCACATGATC 58.776 43.478 0.00 0.00 30.55 2.92
2579 2800 1.172175 TGTGCACTTGTTTGTCTGCA 58.828 45.000 19.41 0.00 37.30 4.41
2582 2803 2.033299 CCGATTGTGCACTTGTTTGTCT 59.967 45.455 19.41 0.00 0.00 3.41
2587 2808 2.020720 TGAACCGATTGTGCACTTGTT 58.979 42.857 19.41 13.07 0.00 2.83
2592 2813 2.987413 TTGATGAACCGATTGTGCAC 57.013 45.000 10.75 10.75 34.48 4.57
2623 2844 5.365025 ACTTTGGCTATCTTCTGATGCTCTA 59.635 40.000 0.00 0.00 34.32 2.43
2624 2845 4.163839 ACTTTGGCTATCTTCTGATGCTCT 59.836 41.667 0.00 0.00 34.32 4.09
2625 2846 4.450053 ACTTTGGCTATCTTCTGATGCTC 58.550 43.478 0.00 0.00 34.32 4.26
2667 2888 4.267349 TGTAGTTTGAACTAGTCTGCCC 57.733 45.455 0.00 0.00 41.81 5.36
2700 2921 6.942976 AGTGGTGAAGATCCGTCTTAATTTA 58.057 36.000 0.00 0.00 44.57 1.40
2733 2954 2.948386 GACTGGAAGGCAAAGGACC 58.052 57.895 0.00 0.00 46.27 4.46
2775 2997 4.590553 TGGACCCACCTCCTGCCA 62.591 66.667 0.00 0.00 39.86 4.92
2815 3037 1.108776 TTTCCGATTCCTCCGACGAT 58.891 50.000 0.00 0.00 0.00 3.73
2816 3038 1.108776 ATTTCCGATTCCTCCGACGA 58.891 50.000 0.00 0.00 0.00 4.20
2817 3039 1.202371 TCATTTCCGATTCCTCCGACG 60.202 52.381 0.00 0.00 0.00 5.12
2819 3041 1.202371 CGTCATTTCCGATTCCTCCGA 60.202 52.381 0.00 0.00 0.00 4.55
2820 3042 1.202371 TCGTCATTTCCGATTCCTCCG 60.202 52.381 0.00 0.00 0.00 4.63
2833 3055 0.541392 TGCAGGGCTACATCGTCATT 59.459 50.000 0.00 0.00 0.00 2.57
2848 3070 1.800315 CGTCGTCCGGTACTTGCAG 60.800 63.158 0.00 0.00 0.00 4.41
2882 3104 8.646004 TGGAATACATGATGTTCCTTTCAAAAA 58.354 29.630 15.25 0.00 46.33 1.94
2897 3119 8.148351 GGCAAGTAGTAGTTATGGAATACATGA 58.852 37.037 0.00 0.00 40.82 3.07
2898 3120 7.116376 CGGCAAGTAGTAGTTATGGAATACATG 59.884 40.741 0.00 0.00 40.82 3.21
2900 3122 6.461927 CCGGCAAGTAGTAGTTATGGAATACA 60.462 42.308 0.00 0.00 0.00 2.29
2901 3123 5.924825 CCGGCAAGTAGTAGTTATGGAATAC 59.075 44.000 0.00 0.00 0.00 1.89
2909 3131 2.094390 CACTGCCGGCAAGTAGTAGTTA 60.094 50.000 32.09 1.95 0.00 2.24
2910 3132 0.974383 ACTGCCGGCAAGTAGTAGTT 59.026 50.000 32.09 4.82 0.00 2.24
2914 3136 1.301716 CACACTGCCGGCAAGTAGT 60.302 57.895 32.09 21.96 0.00 2.73
2915 3137 1.005037 TCACACTGCCGGCAAGTAG 60.005 57.895 32.09 21.22 0.00 2.57
2916 3138 1.301401 GTCACACTGCCGGCAAGTA 60.301 57.895 32.09 16.34 0.00 2.24
2917 3139 2.591715 GTCACACTGCCGGCAAGT 60.592 61.111 32.09 27.55 0.00 3.16
2918 3140 2.121564 CTTGTCACACTGCCGGCAAG 62.122 60.000 32.09 26.85 0.00 4.01
2920 3142 2.591429 CTTGTCACACTGCCGGCA 60.591 61.111 30.59 30.59 0.00 5.69
2921 3143 4.030452 GCTTGTCACACTGCCGGC 62.030 66.667 22.73 22.73 0.00 6.13
2922 3144 1.005037 TAGCTTGTCACACTGCCGG 60.005 57.895 0.00 0.00 0.00 6.13
2924 3146 1.593196 TTGTAGCTTGTCACACTGCC 58.407 50.000 0.00 0.00 0.00 4.85
2925 3147 2.614057 ACTTTGTAGCTTGTCACACTGC 59.386 45.455 0.00 0.00 0.00 4.40
2926 3148 4.882671 AACTTTGTAGCTTGTCACACTG 57.117 40.909 0.00 0.00 0.00 3.66
2927 3149 4.700213 ACAAACTTTGTAGCTTGTCACACT 59.300 37.500 5.30 0.00 43.27 3.55
2930 3152 6.548171 TGTAACAAACTTTGTAGCTTGTCAC 58.452 36.000 7.59 0.00 44.59 3.67
2931 3153 6.745159 TGTAACAAACTTTGTAGCTTGTCA 57.255 33.333 7.59 0.00 44.59 3.58
2933 3155 7.010091 GCATTTGTAACAAACTTTGTAGCTTGT 59.990 33.333 7.59 0.00 44.59 3.16
2934 3156 7.009999 TGCATTTGTAACAAACTTTGTAGCTTG 59.990 33.333 7.59 3.59 44.59 4.01
2936 3158 6.568869 TGCATTTGTAACAAACTTTGTAGCT 58.431 32.000 7.59 0.00 44.59 3.32
2937 3159 6.074356 CCTGCATTTGTAACAAACTTTGTAGC 60.074 38.462 7.59 4.86 44.59 3.58
2938 3160 7.199766 TCCTGCATTTGTAACAAACTTTGTAG 58.800 34.615 7.59 0.00 44.59 2.74
2941 3163 6.900568 TTCCTGCATTTGTAACAAACTTTG 57.099 33.333 0.00 0.00 0.00 2.77
2942 3164 7.913674 TTTTCCTGCATTTGTAACAAACTTT 57.086 28.000 0.00 0.00 0.00 2.66
2943 3165 7.012232 CCATTTTCCTGCATTTGTAACAAACTT 59.988 33.333 0.00 0.00 0.00 2.66
2945 3167 6.657888 CCATTTTCCTGCATTTGTAACAAAC 58.342 36.000 0.00 0.00 0.00 2.93
2948 3170 4.314121 GCCATTTTCCTGCATTTGTAACA 58.686 39.130 0.00 0.00 0.00 2.41
2949 3171 3.684305 GGCCATTTTCCTGCATTTGTAAC 59.316 43.478 0.00 0.00 0.00 2.50
2950 3172 3.326006 TGGCCATTTTCCTGCATTTGTAA 59.674 39.130 0.00 0.00 0.00 2.41
2951 3173 2.902486 TGGCCATTTTCCTGCATTTGTA 59.098 40.909 0.00 0.00 0.00 2.41
2952 3174 1.698532 TGGCCATTTTCCTGCATTTGT 59.301 42.857 0.00 0.00 0.00 2.83
2954 3176 2.552809 GGTTGGCCATTTTCCTGCATTT 60.553 45.455 6.09 0.00 34.09 2.32
2956 3178 0.614812 GGTTGGCCATTTTCCTGCAT 59.385 50.000 6.09 0.00 34.09 3.96
2957 3179 1.479368 GGGTTGGCCATTTTCCTGCA 61.479 55.000 6.09 0.00 36.17 4.41
2958 3180 1.296392 GGGTTGGCCATTTTCCTGC 59.704 57.895 6.09 0.00 36.17 4.85
2959 3181 0.609662 CTGGGTTGGCCATTTTCCTG 59.390 55.000 6.09 6.47 36.17 3.86
2960 3182 0.486879 TCTGGGTTGGCCATTTTCCT 59.513 50.000 6.09 0.00 36.17 3.36
2961 3183 1.207811 CATCTGGGTTGGCCATTTTCC 59.792 52.381 6.09 7.27 36.17 3.13
2963 3185 2.028561 ACATCTGGGTTGGCCATTTT 57.971 45.000 6.09 0.00 36.17 1.82
2967 3189 0.187117 TTCAACATCTGGGTTGGCCA 59.813 50.000 0.00 0.00 46.29 5.36
2969 3191 3.328505 CAATTTCAACATCTGGGTTGGC 58.671 45.455 6.24 0.00 46.29 4.52
2970 3192 3.328505 GCAATTTCAACATCTGGGTTGG 58.671 45.455 6.24 0.00 46.29 3.77
2972 3194 2.971330 TGGCAATTTCAACATCTGGGTT 59.029 40.909 0.00 0.00 0.00 4.11
2974 3196 3.899052 ATGGCAATTTCAACATCTGGG 57.101 42.857 0.00 0.00 0.00 4.45
2975 3197 4.186159 GGAATGGCAATTTCAACATCTGG 58.814 43.478 0.00 0.00 0.00 3.86
2976 3198 4.081309 AGGGAATGGCAATTTCAACATCTG 60.081 41.667 0.00 0.00 0.00 2.90
2977 3199 4.098894 AGGGAATGGCAATTTCAACATCT 58.901 39.130 0.00 0.00 0.00 2.90
2978 3200 4.476628 AGGGAATGGCAATTTCAACATC 57.523 40.909 0.00 0.00 0.00 3.06
2980 3202 6.013898 TGAATTAGGGAATGGCAATTTCAACA 60.014 34.615 0.00 0.00 0.00 3.33
2981 3203 6.405538 TGAATTAGGGAATGGCAATTTCAAC 58.594 36.000 0.00 0.00 0.00 3.18
2982 3204 6.617782 TGAATTAGGGAATGGCAATTTCAA 57.382 33.333 0.00 0.00 0.00 2.69
2983 3205 6.617782 TTGAATTAGGGAATGGCAATTTCA 57.382 33.333 0.00 0.00 0.00 2.69
2984 3206 7.227314 GGAATTGAATTAGGGAATGGCAATTTC 59.773 37.037 0.00 0.00 39.03 2.17
2985 3207 7.056006 GGAATTGAATTAGGGAATGGCAATTT 58.944 34.615 0.00 0.00 39.03 1.82
2986 3208 6.387807 AGGAATTGAATTAGGGAATGGCAATT 59.612 34.615 0.00 0.00 40.23 2.32
2987 3209 5.907079 AGGAATTGAATTAGGGAATGGCAAT 59.093 36.000 0.00 0.00 34.68 3.56
2988 3210 5.279685 AGGAATTGAATTAGGGAATGGCAA 58.720 37.500 0.00 0.00 0.00 4.52
2989 3211 4.882559 AGGAATTGAATTAGGGAATGGCA 58.117 39.130 0.00 0.00 0.00 4.92
2990 3212 5.047731 GCTAGGAATTGAATTAGGGAATGGC 60.048 44.000 0.00 0.00 0.00 4.40
2991 3213 5.182001 CGCTAGGAATTGAATTAGGGAATGG 59.818 44.000 0.00 0.00 0.00 3.16
2992 3214 5.335191 GCGCTAGGAATTGAATTAGGGAATG 60.335 44.000 0.00 0.00 0.00 2.67
2993 3215 4.762251 GCGCTAGGAATTGAATTAGGGAAT 59.238 41.667 0.00 0.00 0.00 3.01
2994 3216 4.134563 GCGCTAGGAATTGAATTAGGGAA 58.865 43.478 0.00 0.00 0.00 3.97
2995 3217 3.135712 TGCGCTAGGAATTGAATTAGGGA 59.864 43.478 9.73 0.00 0.00 4.20
2996 3218 3.476552 TGCGCTAGGAATTGAATTAGGG 58.523 45.455 9.73 0.00 0.00 3.53
2997 3219 3.058639 GCTGCGCTAGGAATTGAATTAGG 60.059 47.826 9.73 0.00 0.00 2.69
2998 3220 3.058639 GGCTGCGCTAGGAATTGAATTAG 60.059 47.826 9.73 0.00 0.00 1.73
2999 3221 2.878406 GGCTGCGCTAGGAATTGAATTA 59.122 45.455 9.73 0.00 0.00 1.40
3000 3222 1.678101 GGCTGCGCTAGGAATTGAATT 59.322 47.619 9.73 0.00 0.00 2.17
3001 3223 1.312815 GGCTGCGCTAGGAATTGAAT 58.687 50.000 9.73 0.00 0.00 2.57
3002 3224 0.035534 TGGCTGCGCTAGGAATTGAA 60.036 50.000 9.73 0.00 0.00 2.69
3003 3225 0.035534 TTGGCTGCGCTAGGAATTGA 60.036 50.000 9.73 0.00 0.00 2.57
3004 3226 0.810648 TTTGGCTGCGCTAGGAATTG 59.189 50.000 9.73 0.00 0.00 2.32
3005 3227 1.098050 CTTTGGCTGCGCTAGGAATT 58.902 50.000 9.73 0.00 0.00 2.17
3006 3228 0.035056 ACTTTGGCTGCGCTAGGAAT 60.035 50.000 9.73 0.00 0.00 3.01
3007 3229 0.955428 CACTTTGGCTGCGCTAGGAA 60.955 55.000 9.73 0.00 0.00 3.36
3008 3230 1.375908 CACTTTGGCTGCGCTAGGA 60.376 57.895 9.73 0.00 0.00 2.94
3009 3231 1.672356 ACACTTTGGCTGCGCTAGG 60.672 57.895 9.73 0.00 0.00 3.02
3010 3232 1.499056 CACACTTTGGCTGCGCTAG 59.501 57.895 9.73 5.66 0.00 3.42
3011 3233 2.616330 GCACACTTTGGCTGCGCTA 61.616 57.895 9.73 0.00 0.00 4.26
3012 3234 3.969802 GCACACTTTGGCTGCGCT 61.970 61.111 9.73 0.00 0.00 5.92
3015 3237 4.268939 TGCGCACACTTTGGCTGC 62.269 61.111 5.66 0.00 0.00 5.25
3016 3238 2.050714 CTGCGCACACTTTGGCTG 60.051 61.111 5.66 0.00 0.00 4.85
3017 3239 3.969802 GCTGCGCACACTTTGGCT 61.970 61.111 5.66 0.00 0.00 4.75
3018 3240 2.616330 TAGCTGCGCACACTTTGGC 61.616 57.895 5.66 6.73 0.00 4.52
3019 3241 1.207593 GTAGCTGCGCACACTTTGG 59.792 57.895 5.66 0.00 0.00 3.28
3020 3242 1.154599 CGTAGCTGCGCACACTTTG 60.155 57.895 12.24 0.00 0.00 2.77
3021 3243 1.157870 AACGTAGCTGCGCACACTTT 61.158 50.000 24.60 6.90 34.88 2.66
3022 3244 0.319211 TAACGTAGCTGCGCACACTT 60.319 50.000 24.60 12.74 34.88 3.16
3023 3245 1.007336 GTAACGTAGCTGCGCACACT 61.007 55.000 24.60 10.03 34.88 3.55
3024 3246 1.279527 TGTAACGTAGCTGCGCACAC 61.280 55.000 24.60 18.28 34.88 3.82
3025 3247 0.597898 TTGTAACGTAGCTGCGCACA 60.598 50.000 24.60 23.24 34.88 4.57
3026 3248 0.093026 CTTGTAACGTAGCTGCGCAC 59.907 55.000 24.60 21.02 34.88 5.34
3027 3249 0.319211 ACTTGTAACGTAGCTGCGCA 60.319 50.000 24.60 10.98 34.88 6.09
3028 3250 0.788391 AACTTGTAACGTAGCTGCGC 59.212 50.000 24.60 8.73 34.88 6.09
3029 3251 2.325761 AGAACTTGTAACGTAGCTGCG 58.674 47.619 23.12 23.12 37.94 5.18
3030 3252 3.739300 TCAAGAACTTGTAACGTAGCTGC 59.261 43.478 13.15 0.00 41.16 5.25
3031 3253 5.233476 TGTTCAAGAACTTGTAACGTAGCTG 59.767 40.000 13.49 0.00 41.67 4.24
3032 3254 5.353938 TGTTCAAGAACTTGTAACGTAGCT 58.646 37.500 13.49 0.00 41.67 3.32
3033 3255 5.646467 TGTTCAAGAACTTGTAACGTAGC 57.354 39.130 13.49 0.00 41.67 3.58
3034 3256 7.457868 TGTTTGTTCAAGAACTTGTAACGTAG 58.542 34.615 13.49 0.00 41.67 3.51
3035 3257 7.361889 TGTTTGTTCAAGAACTTGTAACGTA 57.638 32.000 13.49 7.14 41.67 3.57
3036 3258 6.243811 TGTTTGTTCAAGAACTTGTAACGT 57.756 33.333 13.49 0.00 41.67 3.99
3037 3259 7.483375 TGAATGTTTGTTCAAGAACTTGTAACG 59.517 33.333 13.49 0.00 41.67 3.18
3038 3260 8.682128 TGAATGTTTGTTCAAGAACTTGTAAC 57.318 30.769 13.49 14.65 41.67 2.50
3039 3261 9.134734 GTTGAATGTTTGTTCAAGAACTTGTAA 57.865 29.630 13.49 5.30 45.71 2.41
3040 3262 8.519526 AGTTGAATGTTTGTTCAAGAACTTGTA 58.480 29.630 13.49 2.57 45.71 2.41
3041 3263 7.378181 AGTTGAATGTTTGTTCAAGAACTTGT 58.622 30.769 13.49 0.00 45.71 3.16
3042 3264 7.816945 AGTTGAATGTTTGTTCAAGAACTTG 57.183 32.000 13.49 8.09 45.71 3.16
3043 3265 8.831715 AAAGTTGAATGTTTGTTCAAGAACTT 57.168 26.923 13.49 0.00 45.71 2.66
3044 3266 9.353999 GTAAAGTTGAATGTTTGTTCAAGAACT 57.646 29.630 13.49 0.00 45.71 3.01
3045 3267 9.134734 TGTAAAGTTGAATGTTTGTTCAAGAAC 57.865 29.630 6.01 6.01 45.71 3.01
3046 3268 9.868277 ATGTAAAGTTGAATGTTTGTTCAAGAA 57.132 25.926 2.59 0.00 45.71 2.52
3047 3269 9.515020 GATGTAAAGTTGAATGTTTGTTCAAGA 57.485 29.630 2.59 0.00 45.71 3.02
3048 3270 9.299963 TGATGTAAAGTTGAATGTTTGTTCAAG 57.700 29.630 2.59 0.00 45.71 3.02
3049 3271 9.814899 ATGATGTAAAGTTGAATGTTTGTTCAA 57.185 25.926 0.00 0.00 43.66 2.69
3050 3272 9.462174 GATGATGTAAAGTTGAATGTTTGTTCA 57.538 29.630 0.00 0.00 36.38 3.18
3051 3273 9.462174 TGATGATGTAAAGTTGAATGTTTGTTC 57.538 29.630 0.00 0.00 0.00 3.18
3052 3274 9.814899 TTGATGATGTAAAGTTGAATGTTTGTT 57.185 25.926 0.00 0.00 0.00 2.83
3053 3275 9.467258 CTTGATGATGTAAAGTTGAATGTTTGT 57.533 29.630 0.00 0.00 0.00 2.83
3054 3276 9.467258 ACTTGATGATGTAAAGTTGAATGTTTG 57.533 29.630 0.00 0.00 29.98 2.93
3055 3277 9.467258 CACTTGATGATGTAAAGTTGAATGTTT 57.533 29.630 0.00 0.00 31.88 2.83
3056 3278 7.596248 GCACTTGATGATGTAAAGTTGAATGTT 59.404 33.333 0.00 0.00 31.88 2.71
3057 3279 7.086376 GCACTTGATGATGTAAAGTTGAATGT 58.914 34.615 0.00 0.00 31.88 2.71
3058 3280 7.085746 TGCACTTGATGATGTAAAGTTGAATG 58.914 34.615 0.00 0.00 31.88 2.67
3059 3281 7.218228 TGCACTTGATGATGTAAAGTTGAAT 57.782 32.000 0.00 0.00 31.88 2.57
3060 3282 6.631971 TGCACTTGATGATGTAAAGTTGAA 57.368 33.333 0.00 0.00 31.88 2.69
3061 3283 6.262944 AGTTGCACTTGATGATGTAAAGTTGA 59.737 34.615 0.00 0.00 31.88 3.18
3062 3284 6.441274 AGTTGCACTTGATGATGTAAAGTTG 58.559 36.000 0.00 0.00 31.88 3.16
3063 3285 6.488006 AGAGTTGCACTTGATGATGTAAAGTT 59.512 34.615 0.00 0.00 31.88 2.66
3064 3286 6.000219 AGAGTTGCACTTGATGATGTAAAGT 59.000 36.000 0.00 0.00 34.52 2.66
3065 3287 6.492007 AGAGTTGCACTTGATGATGTAAAG 57.508 37.500 0.00 0.00 0.00 1.85
3066 3288 6.882610 AAGAGTTGCACTTGATGATGTAAA 57.117 33.333 0.00 0.00 0.00 2.01
3067 3289 7.661437 AGTTAAGAGTTGCACTTGATGATGTAA 59.339 33.333 0.00 0.00 0.00 2.41
3068 3290 7.118245 CAGTTAAGAGTTGCACTTGATGATGTA 59.882 37.037 0.00 0.00 0.00 2.29
3069 3291 6.000219 AGTTAAGAGTTGCACTTGATGATGT 59.000 36.000 0.00 0.00 0.00 3.06
3070 3292 6.312487 CAGTTAAGAGTTGCACTTGATGATG 58.688 40.000 0.00 0.00 0.00 3.07
3071 3293 5.413833 CCAGTTAAGAGTTGCACTTGATGAT 59.586 40.000 0.00 0.00 0.00 2.45
3072 3294 4.756642 CCAGTTAAGAGTTGCACTTGATGA 59.243 41.667 0.00 0.00 0.00 2.92
3073 3295 4.516698 ACCAGTTAAGAGTTGCACTTGATG 59.483 41.667 0.00 0.00 0.00 3.07
3074 3296 4.516698 CACCAGTTAAGAGTTGCACTTGAT 59.483 41.667 0.00 0.00 0.00 2.57
3075 3297 3.876914 CACCAGTTAAGAGTTGCACTTGA 59.123 43.478 0.00 0.00 0.00 3.02
3076 3298 3.627577 ACACCAGTTAAGAGTTGCACTTG 59.372 43.478 0.00 0.00 0.00 3.16
3077 3299 3.886123 ACACCAGTTAAGAGTTGCACTT 58.114 40.909 0.00 0.00 0.00 3.16
3078 3300 3.560636 ACACCAGTTAAGAGTTGCACT 57.439 42.857 0.00 0.00 0.00 4.40
3079 3301 4.632538 AAACACCAGTTAAGAGTTGCAC 57.367 40.909 0.00 0.00 36.84 4.57
3080 3302 6.952773 ATAAAACACCAGTTAAGAGTTGCA 57.047 33.333 0.00 0.00 36.84 4.08
3081 3303 7.381408 GGAAATAAAACACCAGTTAAGAGTTGC 59.619 37.037 0.00 0.00 36.84 4.17
3082 3304 8.630037 AGGAAATAAAACACCAGTTAAGAGTTG 58.370 33.333 0.00 0.00 36.84 3.16
3083 3305 8.630037 CAGGAAATAAAACACCAGTTAAGAGTT 58.370 33.333 0.00 0.00 36.84 3.01
3084 3306 7.996644 TCAGGAAATAAAACACCAGTTAAGAGT 59.003 33.333 0.00 0.00 36.84 3.24
3085 3307 8.391075 TCAGGAAATAAAACACCAGTTAAGAG 57.609 34.615 0.00 0.00 36.84 2.85
3086 3308 8.754991 TTCAGGAAATAAAACACCAGTTAAGA 57.245 30.769 0.00 0.00 36.84 2.10
3087 3309 9.810545 TTTTCAGGAAATAAAACACCAGTTAAG 57.189 29.630 0.00 0.00 36.84 1.85
3089 3311 9.810545 CTTTTTCAGGAAATAAAACACCAGTTA 57.189 29.630 0.00 0.00 36.84 2.24
3090 3312 8.536175 TCTTTTTCAGGAAATAAAACACCAGTT 58.464 29.630 0.00 0.00 40.40 3.16
3091 3313 8.073467 TCTTTTTCAGGAAATAAAACACCAGT 57.927 30.769 0.00 0.00 0.00 4.00
3092 3314 7.169813 GCTCTTTTTCAGGAAATAAAACACCAG 59.830 37.037 0.00 0.00 0.00 4.00
3093 3315 6.983890 GCTCTTTTTCAGGAAATAAAACACCA 59.016 34.615 0.00 0.00 0.00 4.17
3094 3316 7.210174 AGCTCTTTTTCAGGAAATAAAACACC 58.790 34.615 0.00 0.00 0.00 4.16
3095 3317 7.382488 GGAGCTCTTTTTCAGGAAATAAAACAC 59.618 37.037 14.64 0.00 0.00 3.32
3096 3318 7.433680 GGAGCTCTTTTTCAGGAAATAAAACA 58.566 34.615 14.64 0.00 0.00 2.83
3097 3319 6.582672 CGGAGCTCTTTTTCAGGAAATAAAAC 59.417 38.462 14.64 0.00 0.00 2.43
3098 3320 6.488683 TCGGAGCTCTTTTTCAGGAAATAAAA 59.511 34.615 14.64 0.00 0.00 1.52
3099 3321 6.001460 TCGGAGCTCTTTTTCAGGAAATAAA 58.999 36.000 14.64 0.00 0.00 1.40
3100 3322 5.556915 TCGGAGCTCTTTTTCAGGAAATAA 58.443 37.500 14.64 0.00 0.00 1.40
3101 3323 5.160607 TCGGAGCTCTTTTTCAGGAAATA 57.839 39.130 14.64 0.00 0.00 1.40
3102 3324 4.006319 CTCGGAGCTCTTTTTCAGGAAAT 58.994 43.478 14.64 0.00 0.00 2.17
3103 3325 3.181454 ACTCGGAGCTCTTTTTCAGGAAA 60.181 43.478 14.64 0.00 0.00 3.13
3104 3326 2.368875 ACTCGGAGCTCTTTTTCAGGAA 59.631 45.455 14.64 0.00 0.00 3.36
3105 3327 1.971357 ACTCGGAGCTCTTTTTCAGGA 59.029 47.619 14.64 0.00 0.00 3.86
3106 3328 2.464157 ACTCGGAGCTCTTTTTCAGG 57.536 50.000 14.64 0.00 0.00 3.86
3107 3329 3.393800 TGAACTCGGAGCTCTTTTTCAG 58.606 45.455 14.64 3.45 0.00 3.02
3108 3330 3.393800 CTGAACTCGGAGCTCTTTTTCA 58.606 45.455 14.64 14.99 0.00 2.69
3109 3331 2.158645 GCTGAACTCGGAGCTCTTTTTC 59.841 50.000 14.64 11.45 32.12 2.29
3110 3332 2.147150 GCTGAACTCGGAGCTCTTTTT 58.853 47.619 14.64 1.90 32.12 1.94
3111 3333 1.346068 AGCTGAACTCGGAGCTCTTTT 59.654 47.619 14.64 1.53 41.94 2.27
3112 3334 0.972883 AGCTGAACTCGGAGCTCTTT 59.027 50.000 14.64 1.91 41.94 2.52
3113 3335 1.748493 CTAGCTGAACTCGGAGCTCTT 59.252 52.381 14.64 0.00 44.55 2.85
3114 3336 1.065053 TCTAGCTGAACTCGGAGCTCT 60.065 52.381 14.64 0.00 44.55 4.09
3115 3337 1.384525 TCTAGCTGAACTCGGAGCTC 58.615 55.000 4.71 4.71 44.55 4.09
3117 3339 2.880963 AATCTAGCTGAACTCGGAGC 57.119 50.000 4.58 0.00 35.28 4.70
3118 3340 6.072175 AGCTTATAATCTAGCTGAACTCGGAG 60.072 42.308 2.83 2.83 45.55 4.63
3119 3341 5.770663 AGCTTATAATCTAGCTGAACTCGGA 59.229 40.000 0.00 0.00 45.55 4.55
3120 3342 6.019779 AGCTTATAATCTAGCTGAACTCGG 57.980 41.667 0.00 0.00 45.55 4.63
3121 3343 7.142021 TGAAGCTTATAATCTAGCTGAACTCG 58.858 38.462 0.00 0.00 46.53 4.18
3122 3344 8.141268 ACTGAAGCTTATAATCTAGCTGAACTC 58.859 37.037 0.00 0.00 46.53 3.01
3123 3345 8.017418 ACTGAAGCTTATAATCTAGCTGAACT 57.983 34.615 0.00 0.00 46.53 3.01
3124 3346 8.547069 CAACTGAAGCTTATAATCTAGCTGAAC 58.453 37.037 0.00 0.00 46.53 3.18
3125 3347 8.478066 TCAACTGAAGCTTATAATCTAGCTGAA 58.522 33.333 0.00 0.00 46.53 3.02
3126 3348 8.011844 TCAACTGAAGCTTATAATCTAGCTGA 57.988 34.615 0.00 0.00 46.53 4.26
3127 3349 8.654230 TTCAACTGAAGCTTATAATCTAGCTG 57.346 34.615 0.00 0.00 46.53 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.