Multiple sequence alignment - TraesCS3B01G255500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G255500 chr3B 100.000 5694 0 0 1 5694 412244518 412250211 0.000000e+00 10515
1 TraesCS3B01G255500 chr3D 96.984 4543 93 17 508 5015 309087500 309082967 0.000000e+00 7590
2 TraesCS3B01G255500 chr3D 84.115 384 61 0 1 384 442538338 442538721 6.970000e-99 372
3 TraesCS3B01G255500 chr3D 83.679 386 60 3 1 385 183147432 183147815 1.510000e-95 361
4 TraesCS3B01G255500 chr3A 94.448 4467 163 26 469 4918 428799699 428795301 0.000000e+00 6796
5 TraesCS3B01G255500 chr3A 93.407 91 6 0 4925 5015 428795101 428795011 9.950000e-28 135
6 TraesCS3B01G255500 chr5B 96.623 681 9 7 5015 5694 663633265 663632598 0.000000e+00 1118
7 TraesCS3B01G255500 chrUn 100.000 420 0 0 3623 4042 476921318 476921737 0.000000e+00 776
8 TraesCS3B01G255500 chr2D 88.244 655 45 12 5014 5641 433237162 433237811 0.000000e+00 754
9 TraesCS3B01G255500 chr2D 85.417 384 52 4 1 384 243160626 243161005 4.130000e-106 396
10 TraesCS3B01G255500 chr2D 88.722 266 25 5 5006 5268 433238802 433238539 2.560000e-83 320
11 TraesCS3B01G255500 chr1D 87.348 656 49 13 5016 5641 466940523 466939872 0.000000e+00 721
12 TraesCS3B01G255500 chr4D 86.398 397 36 4 5016 5396 69210128 69210522 8.820000e-113 418
13 TraesCS3B01G255500 chr4D 88.327 257 25 5 5015 5268 69212712 69212458 2.580000e-78 303
14 TraesCS3B01G255500 chr4D 87.266 267 18 9 5391 5641 69211588 69211854 2.010000e-74 291
15 TraesCS3B01G255500 chr5D 85.677 384 53 2 1 384 253930444 253930825 2.470000e-108 403
16 TraesCS3B01G255500 chr4B 85.677 384 54 1 1 384 445846501 445846883 2.470000e-108 403
17 TraesCS3B01G255500 chr4B 84.856 383 58 0 2 384 634400733 634400351 2.490000e-103 387
18 TraesCS3B01G255500 chr4B 84.073 383 60 1 2 384 496291472 496291853 9.010000e-98 368
19 TraesCS3B01G255500 chr6B 85.600 375 53 1 7 381 347952165 347952538 5.350000e-105 392
20 TraesCS3B01G255500 chr6B 89.701 301 11 7 5401 5689 572667572 572667280 3.240000e-97 366
21 TraesCS3B01G255500 chr6D 87.353 340 35 3 5016 5353 86130366 86130699 3.220000e-102 383
22 TraesCS3B01G255500 chr6D 88.636 264 17 7 5391 5641 86131787 86132050 5.540000e-80 309
23 TraesCS3B01G255500 chr6D 87.938 257 26 5 5015 5268 86132908 86132654 1.200000e-76 298
24 TraesCS3B01G255500 chr7B 84.555 382 59 0 3 384 320138760 320139141 4.160000e-101 379
25 TraesCS3B01G255500 chr4A 85.531 311 42 3 5029 5337 514347232 514346923 7.120000e-84 322
26 TraesCS3B01G255500 chr4A 83.631 336 28 17 5370 5686 514346815 514346488 2.010000e-74 291
27 TraesCS3B01G255500 chr5A 84.348 345 28 16 5362 5686 580213620 580213958 1.190000e-81 315
28 TraesCS3B01G255500 chr5A 83.125 320 47 4 5015 5328 580213196 580213514 9.340000e-73 285
29 TraesCS3B01G255500 chr2B 81.034 232 26 10 5435 5651 129382096 129381868 9.810000e-38 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G255500 chr3B 412244518 412250211 5693 False 10515.0 10515 100.0000 1 5694 1 chr3B.!!$F1 5693
1 TraesCS3B01G255500 chr3D 309082967 309087500 4533 True 7590.0 7590 96.9840 508 5015 1 chr3D.!!$R1 4507
2 TraesCS3B01G255500 chr3A 428795011 428799699 4688 True 3465.5 6796 93.9275 469 5015 2 chr3A.!!$R1 4546
3 TraesCS3B01G255500 chr5B 663632598 663633265 667 True 1118.0 1118 96.6230 5015 5694 1 chr5B.!!$R1 679
4 TraesCS3B01G255500 chr2D 433237162 433237811 649 False 754.0 754 88.2440 5014 5641 1 chr2D.!!$F2 627
5 TraesCS3B01G255500 chr1D 466939872 466940523 651 True 721.0 721 87.3480 5016 5641 1 chr1D.!!$R1 625
6 TraesCS3B01G255500 chr4D 69210128 69211854 1726 False 354.5 418 86.8320 5016 5641 2 chr4D.!!$F1 625
7 TraesCS3B01G255500 chr6D 86130366 86132050 1684 False 346.0 383 87.9945 5016 5641 2 chr6D.!!$F1 625
8 TraesCS3B01G255500 chr4A 514346488 514347232 744 True 306.5 322 84.5810 5029 5686 2 chr4A.!!$R1 657
9 TraesCS3B01G255500 chr5A 580213196 580213958 762 False 300.0 315 83.7365 5015 5686 2 chr5A.!!$F1 671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
302 303 0.035439 AATGTTGGCACGGTCTAGGG 60.035 55.000 0.00 0.00 0.00 3.53 F
325 326 0.119561 TACCTATGGTGGTGGTGGGT 59.880 55.000 0.00 0.00 41.05 4.51 F
764 774 0.466555 CCGTTCCCTTGGTTTCCACA 60.467 55.000 0.00 0.00 30.78 4.17 F
837 847 0.673644 AACCGCAAATCCACTCCTCG 60.674 55.000 0.00 0.00 0.00 4.63 F
1057 1067 1.677966 CTCCTCTTCGACGTCCCCA 60.678 63.158 10.58 0.00 0.00 4.96 F
1171 1182 2.035576 GCTCATGAATCTGGATTTGGGC 59.964 50.000 0.00 4.71 30.66 5.36 F
4188 4221 1.333177 CGGAAGGGTAGAGATCCAGG 58.667 60.000 0.00 0.00 32.08 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1204 1215 1.382695 GAAGATCTCCCCGTCCCCA 60.383 63.158 0.00 0.0 0.00 4.96 R
2070 2099 2.978156 TCAAAGCCTTCTCCATTGGT 57.022 45.000 1.86 0.0 0.00 3.67 R
3470 3499 9.409312 TCAGTGTTAGCAAAAATCATTTGTATG 57.591 29.630 3.22 0.0 0.00 2.39 R
3476 3506 7.935338 CACTTCAGTGTTAGCAAAAATCATT 57.065 32.000 0.00 0.0 40.96 2.57 R
3621 3654 4.212004 TGAATCTCGCAAAACTTCAGTCAG 59.788 41.667 0.00 0.0 0.00 3.51 R
4250 4283 3.784763 AGGAGGTCATTCAGATGGTCATT 59.215 43.478 0.00 0.0 33.93 2.57 R
5047 5281 2.268298 GGACTAAAGCGAATCAGCGAA 58.732 47.619 0.00 0.0 43.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.638556 CGGCTTATATAGAGTGCGCT 57.361 50.000 9.73 0.00 0.00 5.92
20 21 2.254459 CGGCTTATATAGAGTGCGCTG 58.746 52.381 3.44 0.00 0.00 5.18
21 22 1.996191 GGCTTATATAGAGTGCGCTGC 59.004 52.381 3.44 0.00 0.00 5.25
22 23 2.610479 GGCTTATATAGAGTGCGCTGCA 60.610 50.000 3.44 0.00 35.60 4.41
23 24 2.665537 GCTTATATAGAGTGCGCTGCAG 59.334 50.000 10.11 10.11 40.08 4.41
24 25 2.354109 TATATAGAGTGCGCTGCAGC 57.646 50.000 29.12 29.12 40.08 5.25
25 26 0.320247 ATATAGAGTGCGCTGCAGCC 60.320 55.000 32.07 23.92 40.08 4.85
26 27 2.369257 TATAGAGTGCGCTGCAGCCC 62.369 60.000 32.07 24.52 40.08 5.19
33 34 4.711949 CGCTGCAGCCCCTTGTCT 62.712 66.667 32.07 0.00 37.91 3.41
34 35 2.749441 GCTGCAGCCCCTTGTCTC 60.749 66.667 28.76 0.00 34.31 3.36
35 36 2.045536 CTGCAGCCCCTTGTCTCC 60.046 66.667 0.00 0.00 0.00 3.71
36 37 3.635268 CTGCAGCCCCTTGTCTCCC 62.635 68.421 0.00 0.00 0.00 4.30
37 38 3.650950 GCAGCCCCTTGTCTCCCA 61.651 66.667 0.00 0.00 0.00 4.37
38 39 2.352805 CAGCCCCTTGTCTCCCAC 59.647 66.667 0.00 0.00 0.00 4.61
39 40 3.322466 AGCCCCTTGTCTCCCACG 61.322 66.667 0.00 0.00 0.00 4.94
40 41 3.637273 GCCCCTTGTCTCCCACGT 61.637 66.667 0.00 0.00 0.00 4.49
41 42 2.663196 CCCCTTGTCTCCCACGTC 59.337 66.667 0.00 0.00 0.00 4.34
42 43 2.663196 CCCTTGTCTCCCACGTCC 59.337 66.667 0.00 0.00 0.00 4.79
43 44 2.663196 CCTTGTCTCCCACGTCCC 59.337 66.667 0.00 0.00 0.00 4.46
44 45 2.663196 CTTGTCTCCCACGTCCCC 59.337 66.667 0.00 0.00 0.00 4.81
45 46 3.296709 CTTGTCTCCCACGTCCCCG 62.297 68.421 0.00 0.00 40.83 5.73
46 47 3.813606 TTGTCTCCCACGTCCCCGA 62.814 63.158 0.00 0.00 37.88 5.14
47 48 3.450115 GTCTCCCACGTCCCCGAG 61.450 72.222 0.00 0.00 37.88 4.63
48 49 4.753662 TCTCCCACGTCCCCGAGG 62.754 72.222 0.00 0.00 43.50 4.63
52 53 4.096003 CCACGTCCCCGAGGCATT 62.096 66.667 0.00 0.00 37.99 3.56
53 54 2.727392 CCACGTCCCCGAGGCATTA 61.727 63.158 0.00 0.00 37.99 1.90
54 55 1.219664 CACGTCCCCGAGGCATTAA 59.780 57.895 0.00 0.00 37.88 1.40
55 56 0.391927 CACGTCCCCGAGGCATTAAA 60.392 55.000 0.00 0.00 37.88 1.52
56 57 0.544697 ACGTCCCCGAGGCATTAAAT 59.455 50.000 0.00 0.00 37.88 1.40
57 58 0.944386 CGTCCCCGAGGCATTAAATG 59.056 55.000 0.00 0.00 35.63 2.32
58 59 1.474320 CGTCCCCGAGGCATTAAATGA 60.474 52.381 0.00 0.00 35.63 2.57
59 60 1.947456 GTCCCCGAGGCATTAAATGAC 59.053 52.381 0.00 0.00 39.09 3.06
60 61 1.562008 TCCCCGAGGCATTAAATGACA 59.438 47.619 0.00 0.00 42.15 3.58
61 62 1.676006 CCCCGAGGCATTAAATGACAC 59.324 52.381 0.00 0.00 42.15 3.67
62 63 2.643551 CCCGAGGCATTAAATGACACT 58.356 47.619 0.00 0.00 42.15 3.55
63 64 2.355756 CCCGAGGCATTAAATGACACTG 59.644 50.000 0.00 0.00 42.15 3.66
64 65 3.270027 CCGAGGCATTAAATGACACTGA 58.730 45.455 0.00 0.00 42.15 3.41
65 66 3.689161 CCGAGGCATTAAATGACACTGAA 59.311 43.478 0.00 0.00 42.15 3.02
66 67 4.336433 CCGAGGCATTAAATGACACTGAAT 59.664 41.667 0.00 0.00 42.15 2.57
67 68 5.268544 CGAGGCATTAAATGACACTGAATG 58.731 41.667 0.00 0.00 42.15 2.67
71 72 6.564854 GCATTAAATGACACTGAATGCTTC 57.435 37.500 11.04 0.00 45.65 3.86
72 73 6.094719 GCATTAAATGACACTGAATGCTTCA 58.905 36.000 11.04 0.00 45.65 3.02
84 85 5.361135 TGAATGCTTCAGTTACATGTGTG 57.639 39.130 9.11 3.44 34.08 3.82
85 86 5.062528 TGAATGCTTCAGTTACATGTGTGA 58.937 37.500 9.11 5.95 34.08 3.58
86 87 5.706833 TGAATGCTTCAGTTACATGTGTGAT 59.293 36.000 9.11 0.00 34.08 3.06
87 88 5.556355 ATGCTTCAGTTACATGTGTGATG 57.444 39.130 9.11 11.38 0.00 3.07
88 89 4.640364 TGCTTCAGTTACATGTGTGATGA 58.360 39.130 9.11 4.76 0.00 2.92
89 90 4.692155 TGCTTCAGTTACATGTGTGATGAG 59.308 41.667 9.11 5.51 0.00 2.90
90 91 4.436584 GCTTCAGTTACATGTGTGATGAGC 60.437 45.833 9.11 11.11 0.00 4.26
91 92 3.599343 TCAGTTACATGTGTGATGAGCC 58.401 45.455 9.11 0.00 0.00 4.70
92 93 3.261643 TCAGTTACATGTGTGATGAGCCT 59.738 43.478 9.11 0.00 0.00 4.58
93 94 3.620374 CAGTTACATGTGTGATGAGCCTC 59.380 47.826 9.11 0.00 0.00 4.70
94 95 3.517100 AGTTACATGTGTGATGAGCCTCT 59.483 43.478 9.11 0.00 0.00 3.69
95 96 4.711846 AGTTACATGTGTGATGAGCCTCTA 59.288 41.667 9.11 0.00 0.00 2.43
96 97 3.533606 ACATGTGTGATGAGCCTCTAC 57.466 47.619 0.00 0.00 0.00 2.59
97 98 3.102972 ACATGTGTGATGAGCCTCTACT 58.897 45.455 0.00 0.00 0.00 2.57
98 99 4.281657 ACATGTGTGATGAGCCTCTACTA 58.718 43.478 0.00 0.00 0.00 1.82
99 100 4.898265 ACATGTGTGATGAGCCTCTACTAT 59.102 41.667 0.00 0.00 0.00 2.12
100 101 4.926140 TGTGTGATGAGCCTCTACTATG 57.074 45.455 0.00 0.00 0.00 2.23
101 102 3.638627 TGTGTGATGAGCCTCTACTATGG 59.361 47.826 0.00 0.00 0.00 2.74
111 112 4.592485 CCTCTACTATGGCAGTTACAGG 57.408 50.000 0.00 0.00 38.80 4.00
112 113 3.961408 CCTCTACTATGGCAGTTACAGGT 59.039 47.826 0.00 0.00 38.80 4.00
113 114 5.138276 CCTCTACTATGGCAGTTACAGGTA 58.862 45.833 0.00 0.00 38.80 3.08
114 115 5.597182 CCTCTACTATGGCAGTTACAGGTAA 59.403 44.000 0.00 0.00 38.80 2.85
115 116 6.461110 TCTACTATGGCAGTTACAGGTAAC 57.539 41.667 13.13 13.13 44.22 2.50
119 120 2.246469 TGGCAGTTACAGGTAACGGTA 58.754 47.619 18.85 9.53 45.78 4.02
127 128 3.391506 ACAGGTAACGGTAACCTTGAC 57.608 47.619 0.00 0.00 45.26 3.18
128 129 2.967887 ACAGGTAACGGTAACCTTGACT 59.032 45.455 0.00 0.00 45.26 3.41
129 130 3.006217 ACAGGTAACGGTAACCTTGACTC 59.994 47.826 0.00 0.00 45.26 3.36
130 131 3.257624 CAGGTAACGGTAACCTTGACTCT 59.742 47.826 0.00 0.00 45.26 3.24
131 132 3.899980 AGGTAACGGTAACCTTGACTCTT 59.100 43.478 0.00 0.00 45.26 2.85
132 133 3.992427 GGTAACGGTAACCTTGACTCTTG 59.008 47.826 0.00 0.00 33.97 3.02
133 134 3.832615 AACGGTAACCTTGACTCTTGT 57.167 42.857 0.00 0.00 0.00 3.16
134 135 3.832615 ACGGTAACCTTGACTCTTGTT 57.167 42.857 0.00 0.00 0.00 2.83
135 136 4.942761 ACGGTAACCTTGACTCTTGTTA 57.057 40.909 0.00 0.00 0.00 2.41
136 137 5.280654 ACGGTAACCTTGACTCTTGTTAA 57.719 39.130 0.00 0.00 0.00 2.01
137 138 5.673514 ACGGTAACCTTGACTCTTGTTAAA 58.326 37.500 0.00 0.00 0.00 1.52
138 139 5.756833 ACGGTAACCTTGACTCTTGTTAAAG 59.243 40.000 0.00 0.00 34.45 1.85
139 140 5.178809 CGGTAACCTTGACTCTTGTTAAAGG 59.821 44.000 0.00 0.00 41.85 3.11
140 141 5.472478 GGTAACCTTGACTCTTGTTAAAGGG 59.528 44.000 4.88 0.00 41.11 3.95
149 150 5.866207 ACTCTTGTTAAAGGGTGACTTAGG 58.134 41.667 0.00 0.00 45.77 2.69
150 151 5.605488 ACTCTTGTTAAAGGGTGACTTAGGA 59.395 40.000 0.00 0.00 45.77 2.94
151 152 6.272558 ACTCTTGTTAAAGGGTGACTTAGGAT 59.727 38.462 0.00 0.00 45.77 3.24
152 153 7.086685 TCTTGTTAAAGGGTGACTTAGGATT 57.913 36.000 0.00 0.00 38.85 3.01
153 154 7.166167 TCTTGTTAAAGGGTGACTTAGGATTC 58.834 38.462 0.00 0.00 38.85 2.52
154 155 6.697641 TGTTAAAGGGTGACTTAGGATTCT 57.302 37.500 0.00 0.00 38.85 2.40
155 156 7.086685 TGTTAAAGGGTGACTTAGGATTCTT 57.913 36.000 0.00 0.00 38.85 2.52
156 157 7.166167 TGTTAAAGGGTGACTTAGGATTCTTC 58.834 38.462 0.00 0.00 38.85 2.87
157 158 5.843019 AAAGGGTGACTTAGGATTCTTCA 57.157 39.130 0.00 0.00 38.85 3.02
158 159 5.843019 AAGGGTGACTTAGGATTCTTCAA 57.157 39.130 0.00 0.00 37.74 2.69
159 160 5.167303 AGGGTGACTTAGGATTCTTCAAC 57.833 43.478 0.00 0.00 0.00 3.18
160 161 4.019231 AGGGTGACTTAGGATTCTTCAACC 60.019 45.833 0.37 0.37 43.36 3.77
161 162 3.933332 GGTGACTTAGGATTCTTCAACCG 59.067 47.826 0.00 0.00 0.00 4.44
162 163 4.562963 GGTGACTTAGGATTCTTCAACCGT 60.563 45.833 0.00 0.00 0.00 4.83
163 164 4.995487 GTGACTTAGGATTCTTCAACCGTT 59.005 41.667 0.00 0.00 0.00 4.44
164 165 4.994852 TGACTTAGGATTCTTCAACCGTTG 59.005 41.667 4.78 4.78 0.00 4.10
165 166 4.969484 ACTTAGGATTCTTCAACCGTTGT 58.031 39.130 11.01 0.00 0.00 3.32
166 167 6.105397 ACTTAGGATTCTTCAACCGTTGTA 57.895 37.500 11.01 0.79 0.00 2.41
167 168 6.164176 ACTTAGGATTCTTCAACCGTTGTAG 58.836 40.000 11.01 10.87 0.00 2.74
168 169 3.335579 AGGATTCTTCAACCGTTGTAGC 58.664 45.455 11.01 0.00 0.00 3.58
169 170 3.008049 AGGATTCTTCAACCGTTGTAGCT 59.992 43.478 11.01 0.00 0.00 3.32
170 171 3.371285 GGATTCTTCAACCGTTGTAGCTC 59.629 47.826 11.01 10.21 0.00 4.09
171 172 2.450609 TCTTCAACCGTTGTAGCTCC 57.549 50.000 11.01 0.00 0.00 4.70
172 173 1.001633 TCTTCAACCGTTGTAGCTCCC 59.998 52.381 11.01 0.00 0.00 4.30
173 174 0.759959 TTCAACCGTTGTAGCTCCCA 59.240 50.000 11.01 0.00 0.00 4.37
174 175 0.981183 TCAACCGTTGTAGCTCCCAT 59.019 50.000 11.01 0.00 0.00 4.00
175 176 1.086696 CAACCGTTGTAGCTCCCATG 58.913 55.000 2.87 0.00 0.00 3.66
176 177 0.981183 AACCGTTGTAGCTCCCATGA 59.019 50.000 0.00 0.00 0.00 3.07
177 178 0.249398 ACCGTTGTAGCTCCCATGAC 59.751 55.000 0.00 0.00 0.00 3.06
178 179 0.806102 CCGTTGTAGCTCCCATGACG 60.806 60.000 0.00 0.00 0.00 4.35
179 180 1.421410 CGTTGTAGCTCCCATGACGC 61.421 60.000 0.00 0.00 0.00 5.19
180 181 1.090052 GTTGTAGCTCCCATGACGCC 61.090 60.000 0.00 0.00 0.00 5.68
181 182 2.109181 GTAGCTCCCATGACGCCC 59.891 66.667 0.00 0.00 0.00 6.13
182 183 2.041922 TAGCTCCCATGACGCCCT 60.042 61.111 0.00 0.00 0.00 5.19
183 184 2.134287 TAGCTCCCATGACGCCCTC 61.134 63.158 0.00 0.00 0.00 4.30
184 185 4.554036 GCTCCCATGACGCCCTCC 62.554 72.222 0.00 0.00 0.00 4.30
185 186 2.765807 CTCCCATGACGCCCTCCT 60.766 66.667 0.00 0.00 0.00 3.69
186 187 3.083349 TCCCATGACGCCCTCCTG 61.083 66.667 0.00 0.00 0.00 3.86
187 188 3.402681 CCCATGACGCCCTCCTGT 61.403 66.667 0.00 0.00 0.00 4.00
188 189 2.187946 CCATGACGCCCTCCTGTC 59.812 66.667 0.00 0.00 35.67 3.51
189 190 2.362369 CCATGACGCCCTCCTGTCT 61.362 63.158 0.00 0.00 36.10 3.41
190 191 1.599047 CATGACGCCCTCCTGTCTT 59.401 57.895 0.00 0.00 36.10 3.01
191 192 0.460987 CATGACGCCCTCCTGTCTTC 60.461 60.000 0.00 0.00 36.10 2.87
192 193 0.616111 ATGACGCCCTCCTGTCTTCT 60.616 55.000 0.00 0.00 36.10 2.85
193 194 0.832135 TGACGCCCTCCTGTCTTCTT 60.832 55.000 0.00 0.00 36.10 2.52
194 195 0.321996 GACGCCCTCCTGTCTTCTTT 59.678 55.000 0.00 0.00 32.37 2.52
195 196 0.035458 ACGCCCTCCTGTCTTCTTTG 59.965 55.000 0.00 0.00 0.00 2.77
196 197 0.035458 CGCCCTCCTGTCTTCTTTGT 59.965 55.000 0.00 0.00 0.00 2.83
197 198 1.543429 CGCCCTCCTGTCTTCTTTGTT 60.543 52.381 0.00 0.00 0.00 2.83
198 199 2.155279 GCCCTCCTGTCTTCTTTGTTC 58.845 52.381 0.00 0.00 0.00 3.18
199 200 2.417719 CCCTCCTGTCTTCTTTGTTCG 58.582 52.381 0.00 0.00 0.00 3.95
200 201 2.037251 CCCTCCTGTCTTCTTTGTTCGA 59.963 50.000 0.00 0.00 0.00 3.71
201 202 3.321497 CCTCCTGTCTTCTTTGTTCGAG 58.679 50.000 0.00 0.00 0.00 4.04
202 203 3.243907 CCTCCTGTCTTCTTTGTTCGAGT 60.244 47.826 0.00 0.00 0.00 4.18
203 204 3.717707 TCCTGTCTTCTTTGTTCGAGTG 58.282 45.455 0.00 0.00 0.00 3.51
204 205 2.802816 CCTGTCTTCTTTGTTCGAGTGG 59.197 50.000 0.00 0.00 0.00 4.00
205 206 3.458189 CTGTCTTCTTTGTTCGAGTGGT 58.542 45.455 0.00 0.00 0.00 4.16
206 207 3.194861 TGTCTTCTTTGTTCGAGTGGTG 58.805 45.455 0.00 0.00 0.00 4.17
207 208 2.544267 GTCTTCTTTGTTCGAGTGGTGG 59.456 50.000 0.00 0.00 0.00 4.61
208 209 1.264288 CTTCTTTGTTCGAGTGGTGGC 59.736 52.381 0.00 0.00 0.00 5.01
209 210 0.534203 TCTTTGTTCGAGTGGTGGCC 60.534 55.000 0.00 0.00 0.00 5.36
210 211 1.515521 CTTTGTTCGAGTGGTGGCCC 61.516 60.000 0.00 0.00 0.00 5.80
211 212 3.818121 TTGTTCGAGTGGTGGCCCG 62.818 63.158 0.00 0.00 0.00 6.13
212 213 4.309950 GTTCGAGTGGTGGCCCGT 62.310 66.667 0.00 0.00 0.00 5.28
213 214 3.998672 TTCGAGTGGTGGCCCGTC 61.999 66.667 0.00 0.00 0.00 4.79
215 216 4.742201 CGAGTGGTGGCCCGTCAG 62.742 72.222 0.00 0.00 0.00 3.51
234 235 2.775351 CCAAATGGCGTATGGTCGT 58.225 52.632 0.00 0.00 0.00 4.34
235 236 0.655733 CCAAATGGCGTATGGTCGTC 59.344 55.000 0.00 0.00 35.91 4.20
236 237 1.651987 CAAATGGCGTATGGTCGTCT 58.348 50.000 0.00 0.00 36.35 4.18
237 238 1.327460 CAAATGGCGTATGGTCGTCTG 59.673 52.381 0.00 0.00 36.35 3.51
238 239 0.821517 AATGGCGTATGGTCGTCTGA 59.178 50.000 0.00 0.00 36.35 3.27
239 240 0.821517 ATGGCGTATGGTCGTCTGAA 59.178 50.000 0.00 0.00 36.35 3.02
240 241 0.821517 TGGCGTATGGTCGTCTGAAT 59.178 50.000 0.00 0.00 36.35 2.57
241 242 1.209128 GGCGTATGGTCGTCTGAATG 58.791 55.000 0.00 0.00 32.43 2.67
242 243 0.577269 GCGTATGGTCGTCTGAATGC 59.423 55.000 0.00 0.00 0.00 3.56
243 244 1.921243 CGTATGGTCGTCTGAATGCA 58.079 50.000 0.00 0.00 0.00 3.96
244 245 2.267426 CGTATGGTCGTCTGAATGCAA 58.733 47.619 0.00 0.00 0.00 4.08
245 246 2.866156 CGTATGGTCGTCTGAATGCAAT 59.134 45.455 0.00 0.00 0.00 3.56
246 247 3.309682 CGTATGGTCGTCTGAATGCAATT 59.690 43.478 0.00 0.00 40.93 2.32
247 248 3.770263 ATGGTCGTCTGAATGCAATTG 57.230 42.857 0.00 0.00 36.07 2.32
248 249 2.777094 TGGTCGTCTGAATGCAATTGA 58.223 42.857 10.34 0.00 36.07 2.57
249 250 2.743664 TGGTCGTCTGAATGCAATTGAG 59.256 45.455 10.34 0.00 39.02 3.02
250 251 2.476854 GGTCGTCTGAATGCAATTGAGC 60.477 50.000 10.34 0.00 37.47 4.26
260 261 3.153676 TGCAATTGAGCAATCCGATTG 57.846 42.857 15.63 15.63 42.46 2.67
261 262 2.159212 TGCAATTGAGCAATCCGATTGG 60.159 45.455 20.26 5.36 42.46 3.16
262 263 4.435299 TGCAATTGAGCAATCCGATTGGA 61.435 43.478 20.26 3.49 44.14 3.53
263 264 6.457132 TGCAATTGAGCAATCCGATTGGAC 62.457 45.833 20.26 6.88 43.31 4.02
276 277 6.835819 TCCGATTGGACTACCTGATATAAG 57.164 41.667 0.00 0.00 40.17 1.73
277 278 5.185249 TCCGATTGGACTACCTGATATAAGC 59.815 44.000 0.00 0.00 40.17 3.09
278 279 5.047306 CCGATTGGACTACCTGATATAAGCA 60.047 44.000 0.00 0.00 37.49 3.91
279 280 6.351371 CCGATTGGACTACCTGATATAAGCAT 60.351 42.308 0.00 0.00 37.49 3.79
280 281 6.754209 CGATTGGACTACCTGATATAAGCATC 59.246 42.308 0.00 0.00 37.04 3.91
281 282 7.363355 CGATTGGACTACCTGATATAAGCATCT 60.363 40.741 0.00 0.00 37.04 2.90
282 283 6.596309 TGGACTACCTGATATAAGCATCTG 57.404 41.667 0.00 0.00 37.04 2.90
283 284 6.314917 TGGACTACCTGATATAAGCATCTGA 58.685 40.000 0.00 0.00 37.04 3.27
284 285 6.782494 TGGACTACCTGATATAAGCATCTGAA 59.218 38.462 0.00 0.00 37.04 3.02
285 286 7.455953 TGGACTACCTGATATAAGCATCTGAAT 59.544 37.037 0.00 0.00 37.04 2.57
286 287 7.763528 GGACTACCTGATATAAGCATCTGAATG 59.236 40.741 0.00 0.00 35.87 2.67
287 288 8.200024 ACTACCTGATATAAGCATCTGAATGT 57.800 34.615 0.00 0.00 35.18 2.71
288 289 8.654997 ACTACCTGATATAAGCATCTGAATGTT 58.345 33.333 0.00 0.00 35.18 2.71
289 290 7.741027 ACCTGATATAAGCATCTGAATGTTG 57.259 36.000 0.00 0.00 35.18 3.33
290 291 6.713903 ACCTGATATAAGCATCTGAATGTTGG 59.286 38.462 0.00 0.00 35.18 3.77
291 292 6.349115 CCTGATATAAGCATCTGAATGTTGGC 60.349 42.308 0.00 0.00 35.18 4.52
292 293 6.063404 TGATATAAGCATCTGAATGTTGGCA 58.937 36.000 0.00 0.00 35.18 4.92
293 294 4.644103 ATAAGCATCTGAATGTTGGCAC 57.356 40.909 0.00 0.00 35.18 5.01
294 295 0.806868 AGCATCTGAATGTTGGCACG 59.193 50.000 0.00 0.00 35.18 5.34
295 296 0.179156 GCATCTGAATGTTGGCACGG 60.179 55.000 0.00 0.00 35.18 4.94
296 297 1.167851 CATCTGAATGTTGGCACGGT 58.832 50.000 0.00 0.00 0.00 4.83
297 298 1.131126 CATCTGAATGTTGGCACGGTC 59.869 52.381 0.00 0.00 0.00 4.79
298 299 0.396435 TCTGAATGTTGGCACGGTCT 59.604 50.000 0.00 0.00 0.00 3.85
299 300 1.621317 TCTGAATGTTGGCACGGTCTA 59.379 47.619 0.00 0.00 0.00 2.59
300 301 2.002586 CTGAATGTTGGCACGGTCTAG 58.997 52.381 0.00 0.00 0.00 2.43
301 302 1.338674 TGAATGTTGGCACGGTCTAGG 60.339 52.381 0.00 0.00 0.00 3.02
302 303 0.035439 AATGTTGGCACGGTCTAGGG 60.035 55.000 0.00 0.00 0.00 3.53
303 304 0.907704 ATGTTGGCACGGTCTAGGGA 60.908 55.000 0.00 0.00 0.00 4.20
304 305 1.079336 GTTGGCACGGTCTAGGGAC 60.079 63.158 0.00 0.00 41.43 4.46
315 316 3.899612 GTCTAGGGACCTACCTATGGT 57.100 52.381 0.00 0.00 42.03 3.55
316 317 3.498334 GTCTAGGGACCTACCTATGGTG 58.502 54.545 0.00 0.00 42.03 4.17
317 318 2.449730 TCTAGGGACCTACCTATGGTGG 59.550 54.545 0.00 0.00 42.03 4.61
318 319 1.024536 AGGGACCTACCTATGGTGGT 58.975 55.000 9.47 9.47 39.65 4.16
319 320 1.129058 GGGACCTACCTATGGTGGTG 58.871 60.000 12.95 2.67 41.05 4.17
320 321 1.129058 GGACCTACCTATGGTGGTGG 58.871 60.000 12.95 8.75 41.05 4.61
321 322 1.624391 GGACCTACCTATGGTGGTGGT 60.624 57.143 12.95 11.17 41.08 4.16
322 323 1.485066 GACCTACCTATGGTGGTGGTG 59.515 57.143 12.95 0.44 39.67 4.17
323 324 0.837272 CCTACCTATGGTGGTGGTGG 59.163 60.000 0.00 0.00 41.05 4.61
324 325 0.837272 CTACCTATGGTGGTGGTGGG 59.163 60.000 0.00 0.00 41.05 4.61
325 326 0.119561 TACCTATGGTGGTGGTGGGT 59.880 55.000 0.00 0.00 41.05 4.51
326 327 1.205460 ACCTATGGTGGTGGTGGGTC 61.205 60.000 0.00 0.00 39.17 4.46
327 328 1.607612 CTATGGTGGTGGTGGGTCC 59.392 63.158 0.00 0.00 0.00 4.46
328 329 1.921869 CTATGGTGGTGGTGGGTCCC 61.922 65.000 0.00 0.00 34.77 4.46
329 330 2.714809 TATGGTGGTGGTGGGTCCCA 62.715 60.000 6.47 6.47 34.77 4.37
330 331 3.264845 GGTGGTGGTGGGTCCCAT 61.265 66.667 15.49 0.00 36.74 4.00
331 332 2.035626 GTGGTGGTGGGTCCCATG 59.964 66.667 15.49 0.00 36.74 3.66
332 333 2.451493 TGGTGGTGGGTCCCATGT 60.451 61.111 15.49 0.00 36.74 3.21
333 334 2.035626 GGTGGTGGGTCCCATGTG 59.964 66.667 15.49 0.00 36.74 3.21
334 335 2.035626 GTGGTGGGTCCCATGTGG 59.964 66.667 15.49 0.00 36.74 4.17
366 367 3.713867 GGTCCTTGACCCTACCTCT 57.286 57.895 1.68 0.00 46.19 3.69
367 368 2.842645 GGTCCTTGACCCTACCTCTA 57.157 55.000 1.68 0.00 46.19 2.43
368 369 3.111741 GGTCCTTGACCCTACCTCTAA 57.888 52.381 1.68 0.00 46.19 2.10
369 370 3.655384 GGTCCTTGACCCTACCTCTAAT 58.345 50.000 1.68 0.00 46.19 1.73
370 371 4.812653 GGTCCTTGACCCTACCTCTAATA 58.187 47.826 1.68 0.00 46.19 0.98
371 372 4.833938 GGTCCTTGACCCTACCTCTAATAG 59.166 50.000 1.68 0.00 46.19 1.73
372 373 5.399958 GGTCCTTGACCCTACCTCTAATAGA 60.400 48.000 1.68 0.00 46.19 1.98
373 374 6.316513 GTCCTTGACCCTACCTCTAATAGAT 58.683 44.000 0.00 0.00 0.00 1.98
374 375 6.209788 GTCCTTGACCCTACCTCTAATAGATG 59.790 46.154 0.00 0.00 0.00 2.90
375 376 6.104243 TCCTTGACCCTACCTCTAATAGATGA 59.896 42.308 0.00 0.00 0.00 2.92
376 377 6.209788 CCTTGACCCTACCTCTAATAGATGAC 59.790 46.154 0.00 0.00 0.00 3.06
377 378 5.642165 TGACCCTACCTCTAATAGATGACC 58.358 45.833 0.00 0.00 0.00 4.02
378 379 5.375956 TGACCCTACCTCTAATAGATGACCT 59.624 44.000 0.00 0.00 0.00 3.85
379 380 5.894653 ACCCTACCTCTAATAGATGACCTC 58.105 45.833 0.00 0.00 0.00 3.85
380 381 5.375956 ACCCTACCTCTAATAGATGACCTCA 59.624 44.000 0.00 0.00 0.00 3.86
381 382 6.047359 ACCCTACCTCTAATAGATGACCTCAT 59.953 42.308 0.00 0.00 39.70 2.90
396 397 2.791383 CTCATCAGAGGCGGTAGAAG 57.209 55.000 0.00 0.00 38.26 2.85
397 398 0.747255 TCATCAGAGGCGGTAGAAGC 59.253 55.000 0.00 0.00 0.00 3.86
406 407 2.141535 GCGGTAGAAGCCATAGTGAG 57.858 55.000 0.00 0.00 0.00 3.51
407 408 1.269831 GCGGTAGAAGCCATAGTGAGG 60.270 57.143 0.00 0.00 0.00 3.86
408 409 2.307768 CGGTAGAAGCCATAGTGAGGA 58.692 52.381 0.00 0.00 0.00 3.71
409 410 2.294791 CGGTAGAAGCCATAGTGAGGAG 59.705 54.545 0.00 0.00 0.00 3.69
410 411 2.630580 GGTAGAAGCCATAGTGAGGAGG 59.369 54.545 0.00 0.00 0.00 4.30
413 414 2.423446 GCCATAGTGAGGAGGCCG 59.577 66.667 0.00 0.00 41.25 6.13
414 415 3.142393 CCATAGTGAGGAGGCCGG 58.858 66.667 0.00 0.00 0.00 6.13
415 416 2.423446 CATAGTGAGGAGGCCGGC 59.577 66.667 21.18 21.18 0.00 6.13
416 417 2.844839 ATAGTGAGGAGGCCGGCC 60.845 66.667 39.29 39.29 0.00 6.13
454 455 2.700371 CCCCCTTGAATTTTATGGGAGC 59.300 50.000 12.29 0.00 40.23 4.70
455 456 2.362077 CCCCTTGAATTTTATGGGAGCG 59.638 50.000 12.29 0.00 40.23 5.03
456 457 3.287222 CCCTTGAATTTTATGGGAGCGA 58.713 45.455 6.33 0.00 40.23 4.93
457 458 3.316308 CCCTTGAATTTTATGGGAGCGAG 59.684 47.826 6.33 0.00 40.23 5.03
458 459 4.199310 CCTTGAATTTTATGGGAGCGAGA 58.801 43.478 0.00 0.00 0.00 4.04
459 460 4.035675 CCTTGAATTTTATGGGAGCGAGAC 59.964 45.833 0.00 0.00 0.00 3.36
460 461 3.541632 TGAATTTTATGGGAGCGAGACC 58.458 45.455 0.00 0.00 0.00 3.85
461 462 3.199946 TGAATTTTATGGGAGCGAGACCT 59.800 43.478 0.00 0.00 0.00 3.85
462 463 4.407621 TGAATTTTATGGGAGCGAGACCTA 59.592 41.667 0.00 0.00 0.00 3.08
463 464 5.104693 TGAATTTTATGGGAGCGAGACCTAA 60.105 40.000 0.00 0.00 0.00 2.69
464 465 4.829872 TTTTATGGGAGCGAGACCTAAA 57.170 40.909 0.00 0.00 0.00 1.85
465 466 4.829872 TTTATGGGAGCGAGACCTAAAA 57.170 40.909 0.00 0.00 0.00 1.52
466 467 2.990066 ATGGGAGCGAGACCTAAAAG 57.010 50.000 0.00 0.00 0.00 2.27
467 468 0.902531 TGGGAGCGAGACCTAAAAGG 59.097 55.000 0.00 0.00 42.49 3.11
492 493 5.391312 AAGACCATGTAAGTTCCATTTGC 57.609 39.130 0.00 0.00 0.00 3.68
495 496 3.258123 ACCATGTAAGTTCCATTTGCCAC 59.742 43.478 0.00 0.00 0.00 5.01
734 744 1.106944 CCAAGTCACGGCCCACTTTT 61.107 55.000 6.65 0.00 30.06 2.27
764 774 0.466555 CCGTTCCCTTGGTTTCCACA 60.467 55.000 0.00 0.00 30.78 4.17
837 847 0.673644 AACCGCAAATCCACTCCTCG 60.674 55.000 0.00 0.00 0.00 4.63
870 880 3.686120 CGAGAGGCCTTTACTCTACTCCT 60.686 52.174 6.77 0.00 44.89 3.69
1057 1067 1.677966 CTCCTCTTCGACGTCCCCA 60.678 63.158 10.58 0.00 0.00 4.96
1171 1182 2.035576 GCTCATGAATCTGGATTTGGGC 59.964 50.000 0.00 4.71 30.66 5.36
1574 1585 4.402473 CGAAGAACTGTTTCGTTTTTGC 57.598 40.909 6.49 0.00 41.71 3.68
1578 1589 6.249682 CGAAGAACTGTTTCGTTTTTGCTTTA 59.750 34.615 6.49 0.00 41.71 1.85
1580 1591 6.033966 AGAACTGTTTCGTTTTTGCTTTAGG 58.966 36.000 0.00 0.00 36.78 2.69
1581 1592 4.109766 ACTGTTTCGTTTTTGCTTTAGGC 58.890 39.130 0.00 0.00 42.22 3.93
1582 1593 3.109619 TGTTTCGTTTTTGCTTTAGGCG 58.890 40.909 0.00 0.00 45.43 5.52
1583 1594 3.181499 TGTTTCGTTTTTGCTTTAGGCGA 60.181 39.130 0.00 0.00 45.43 5.54
1585 1596 3.907894 TCGTTTTTGCTTTAGGCGAAT 57.092 38.095 0.00 0.00 43.13 3.34
1701 1724 4.524328 GGTCTCATTTTGGTCATGTTCCTT 59.476 41.667 10.06 0.00 0.00 3.36
1770 1793 6.301486 TGGCATCTATGTTCTGCATCTATTT 58.699 36.000 0.00 0.00 38.94 1.40
2070 2099 6.491745 TGATGGTGCTGAAAAGTTTGGTTATA 59.508 34.615 0.00 0.00 0.00 0.98
3621 3654 1.745489 CCCTTCCGTGGTAGCAAGC 60.745 63.158 0.00 0.00 0.00 4.01
4042 4075 2.441750 TGTGGATAGAATACCCAAGGGC 59.558 50.000 4.70 0.00 34.60 5.19
4188 4221 1.333177 CGGAAGGGTAGAGATCCAGG 58.667 60.000 0.00 0.00 32.08 4.45
4410 4443 0.545548 AGGTGGAAGAGACCCTGGAC 60.546 60.000 0.00 0.00 33.51 4.02
4413 4446 1.065854 GTGGAAGAGACCCTGGACATG 60.066 57.143 0.00 0.00 0.00 3.21
4458 4498 1.687660 TGGTAAACTGCGTCACCTGTA 59.312 47.619 11.08 0.00 32.04 2.74
4460 4500 2.477754 GGTAAACTGCGTCACCTGTAAC 59.522 50.000 0.00 0.00 0.00 2.50
4471 4511 2.426522 CACCTGTAACTGGTGGTCATG 58.573 52.381 14.98 0.00 45.56 3.07
4585 4625 1.706443 ACGTTACAAGACTAAGCGGC 58.294 50.000 0.00 0.00 0.00 6.53
4624 4664 4.321899 GCTGCTGGAATTGTGGATTTACAA 60.322 41.667 0.00 0.00 43.93 2.41
4710 4750 0.175760 TGATCACAAGAGCGGCCTAC 59.824 55.000 0.00 0.00 31.29 3.18
4716 4756 1.677966 AAGAGCGGCCTACTCGTCA 60.678 57.895 14.86 0.00 39.23 4.35
4727 4768 1.587490 CTACTCGTCACTACTCCGTCG 59.413 57.143 0.00 0.00 0.00 5.12
4859 4900 1.748493 GAACCCATAGATGCGGCAAAA 59.252 47.619 6.82 0.00 0.00 2.44
4922 4963 4.261489 CGACTCCGTAGCATATTTGTACCT 60.261 45.833 0.00 0.00 0.00 3.08
4948 5182 4.041917 CCATGGTGTGCGTGTGCC 62.042 66.667 2.57 0.00 41.78 5.01
4959 5193 1.287815 CGTGTGCCTCGTACTTCCA 59.712 57.895 0.00 0.00 0.00 3.53
5047 5281 5.136828 TCATTGGTGGTCATTGTAGTTGTT 58.863 37.500 0.00 0.00 0.00 2.83
5311 5554 4.880537 CTAGCCACCTGAGCGCGG 62.881 72.222 8.83 0.00 34.64 6.46
5686 7105 7.896383 ACTAAATAGATGAGAGCAGAGAGTT 57.104 36.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.254459 CAGCGCACTCTATATAAGCCG 58.746 52.381 11.47 0.00 0.00 5.52
1 2 1.996191 GCAGCGCACTCTATATAAGCC 59.004 52.381 11.47 0.00 0.00 4.35
2 3 2.665537 CTGCAGCGCACTCTATATAAGC 59.334 50.000 11.47 0.00 33.79 3.09
3 4 2.665537 GCTGCAGCGCACTCTATATAAG 59.334 50.000 25.23 0.00 33.79 1.73
4 5 2.610479 GGCTGCAGCGCACTCTATATAA 60.610 50.000 31.19 0.00 43.26 0.98
5 6 1.067565 GGCTGCAGCGCACTCTATATA 60.068 52.381 31.19 0.00 43.26 0.86
6 7 0.320247 GGCTGCAGCGCACTCTATAT 60.320 55.000 31.19 0.00 43.26 0.86
7 8 1.068083 GGCTGCAGCGCACTCTATA 59.932 57.895 31.19 0.00 43.26 1.31
8 9 2.202987 GGCTGCAGCGCACTCTAT 60.203 61.111 31.19 0.00 43.26 1.98
16 17 4.711949 AGACAAGGGGCTGCAGCG 62.712 66.667 31.19 19.65 43.26 5.18
17 18 2.749441 GAGACAAGGGGCTGCAGC 60.749 66.667 30.88 30.88 41.14 5.25
18 19 2.045536 GGAGACAAGGGGCTGCAG 60.046 66.667 10.11 10.11 0.00 4.41
19 20 3.650950 GGGAGACAAGGGGCTGCA 61.651 66.667 0.50 0.00 0.00 4.41
20 21 3.650950 TGGGAGACAAGGGGCTGC 61.651 66.667 0.00 0.00 0.00 5.25
21 22 2.352805 GTGGGAGACAAGGGGCTG 59.647 66.667 0.00 0.00 0.00 4.85
22 23 3.322466 CGTGGGAGACAAGGGGCT 61.322 66.667 0.00 0.00 0.00 5.19
23 24 3.607370 GACGTGGGAGACAAGGGGC 62.607 68.421 0.00 0.00 32.45 5.80
24 25 2.663196 GACGTGGGAGACAAGGGG 59.337 66.667 0.00 0.00 32.45 4.79
25 26 2.663196 GGACGTGGGAGACAAGGG 59.337 66.667 0.00 0.00 32.45 3.95
26 27 2.663196 GGGACGTGGGAGACAAGG 59.337 66.667 0.00 0.00 32.45 3.61
27 28 2.663196 GGGGACGTGGGAGACAAG 59.337 66.667 0.00 0.00 34.52 3.16
39 40 1.947456 GTCATTTAATGCCTCGGGGAC 59.053 52.381 4.80 0.00 33.58 4.46
40 41 1.562008 TGTCATTTAATGCCTCGGGGA 59.438 47.619 4.80 0.00 33.58 4.81
41 42 1.676006 GTGTCATTTAATGCCTCGGGG 59.324 52.381 0.00 0.00 0.00 5.73
42 43 2.355756 CAGTGTCATTTAATGCCTCGGG 59.644 50.000 0.00 0.00 0.00 5.14
43 44 3.270027 TCAGTGTCATTTAATGCCTCGG 58.730 45.455 0.00 0.00 0.00 4.63
44 45 4.944962 TTCAGTGTCATTTAATGCCTCG 57.055 40.909 0.00 0.00 0.00 4.63
45 46 5.039333 GCATTCAGTGTCATTTAATGCCTC 58.961 41.667 13.50 0.00 44.11 4.70
46 47 5.002464 GCATTCAGTGTCATTTAATGCCT 57.998 39.130 13.50 0.00 44.11 4.75
64 65 5.706833 TCATCACACATGTAACTGAAGCATT 59.293 36.000 0.00 0.00 0.00 3.56
65 66 5.247862 TCATCACACATGTAACTGAAGCAT 58.752 37.500 0.00 0.00 0.00 3.79
66 67 4.640364 TCATCACACATGTAACTGAAGCA 58.360 39.130 0.00 0.00 0.00 3.91
67 68 4.436584 GCTCATCACACATGTAACTGAAGC 60.437 45.833 0.00 3.53 0.00 3.86
68 69 4.093998 GGCTCATCACACATGTAACTGAAG 59.906 45.833 0.00 0.00 0.00 3.02
69 70 4.002982 GGCTCATCACACATGTAACTGAA 58.997 43.478 0.00 0.00 0.00 3.02
70 71 3.261643 AGGCTCATCACACATGTAACTGA 59.738 43.478 0.00 0.00 0.00 3.41
71 72 3.603532 AGGCTCATCACACATGTAACTG 58.396 45.455 0.00 0.00 0.00 3.16
72 73 3.517100 AGAGGCTCATCACACATGTAACT 59.483 43.478 18.26 0.00 0.00 2.24
73 74 3.866651 AGAGGCTCATCACACATGTAAC 58.133 45.455 18.26 0.00 0.00 2.50
74 75 4.711846 AGTAGAGGCTCATCACACATGTAA 59.288 41.667 18.26 0.00 0.00 2.41
75 76 4.281657 AGTAGAGGCTCATCACACATGTA 58.718 43.478 18.26 0.00 0.00 2.29
76 77 3.102972 AGTAGAGGCTCATCACACATGT 58.897 45.455 18.26 0.00 0.00 3.21
77 78 3.815856 AGTAGAGGCTCATCACACATG 57.184 47.619 18.26 0.00 0.00 3.21
78 79 4.282957 CCATAGTAGAGGCTCATCACACAT 59.717 45.833 18.26 6.31 0.00 3.21
79 80 3.638627 CCATAGTAGAGGCTCATCACACA 59.361 47.826 18.26 4.34 0.00 3.72
80 81 4.250116 CCATAGTAGAGGCTCATCACAC 57.750 50.000 18.26 6.23 0.00 3.82
89 90 9.762229 GTTACCTGTAACTGCCATAGTAGAGGC 62.762 48.148 11.90 9.00 42.02 4.70
90 91 3.961408 ACCTGTAACTGCCATAGTAGAGG 59.039 47.826 0.00 0.00 39.18 3.69
91 92 6.505272 GTTACCTGTAACTGCCATAGTAGAG 58.495 44.000 11.90 0.00 41.51 2.43
92 93 5.066893 CGTTACCTGTAACTGCCATAGTAGA 59.933 44.000 15.88 0.00 42.31 2.59
93 94 5.279384 CGTTACCTGTAACTGCCATAGTAG 58.721 45.833 15.88 0.00 42.31 2.57
94 95 4.098349 CCGTTACCTGTAACTGCCATAGTA 59.902 45.833 15.88 0.00 42.31 1.82
95 96 3.118884 CCGTTACCTGTAACTGCCATAGT 60.119 47.826 15.88 0.00 42.31 2.12
96 97 3.118884 ACCGTTACCTGTAACTGCCATAG 60.119 47.826 15.88 1.72 42.31 2.23
97 98 2.833338 ACCGTTACCTGTAACTGCCATA 59.167 45.455 15.88 0.00 42.31 2.74
98 99 1.626825 ACCGTTACCTGTAACTGCCAT 59.373 47.619 15.88 0.00 42.31 4.40
99 100 1.050204 ACCGTTACCTGTAACTGCCA 58.950 50.000 15.88 0.00 42.31 4.92
100 101 2.995939 GTTACCGTTACCTGTAACTGCC 59.004 50.000 15.88 1.50 42.13 4.85
101 102 2.995939 GGTTACCGTTACCTGTAACTGC 59.004 50.000 15.88 4.20 43.91 4.40
102 103 4.525912 AGGTTACCGTTACCTGTAACTG 57.474 45.455 8.44 12.55 44.25 3.16
103 104 4.588528 TCAAGGTTACCGTTACCTGTAACT 59.411 41.667 9.95 3.64 45.17 2.24
104 105 4.686091 GTCAAGGTTACCGTTACCTGTAAC 59.314 45.833 9.95 9.61 45.17 2.50
105 106 4.588528 AGTCAAGGTTACCGTTACCTGTAA 59.411 41.667 9.95 0.00 45.17 2.41
106 107 4.151883 AGTCAAGGTTACCGTTACCTGTA 58.848 43.478 9.95 0.00 45.17 2.74
107 108 2.967887 AGTCAAGGTTACCGTTACCTGT 59.032 45.455 9.95 0.00 45.17 4.00
108 109 3.257624 AGAGTCAAGGTTACCGTTACCTG 59.742 47.826 9.95 5.21 45.17 4.00
110 111 3.949842 AGAGTCAAGGTTACCGTTACC 57.050 47.619 0.00 0.00 35.85 2.85
111 112 4.625028 ACAAGAGTCAAGGTTACCGTTAC 58.375 43.478 0.00 0.00 0.00 2.50
112 113 4.942761 ACAAGAGTCAAGGTTACCGTTA 57.057 40.909 0.00 0.00 0.00 3.18
113 114 3.832615 ACAAGAGTCAAGGTTACCGTT 57.167 42.857 0.00 0.00 0.00 4.44
114 115 3.832615 AACAAGAGTCAAGGTTACCGT 57.167 42.857 0.00 0.00 0.00 4.83
115 116 5.178809 CCTTTAACAAGAGTCAAGGTTACCG 59.821 44.000 0.00 0.00 35.11 4.02
116 117 5.472478 CCCTTTAACAAGAGTCAAGGTTACC 59.528 44.000 0.00 0.00 36.80 2.85
117 118 6.017357 CACCCTTTAACAAGAGTCAAGGTTAC 60.017 42.308 4.49 0.00 36.80 2.50
118 119 6.059484 CACCCTTTAACAAGAGTCAAGGTTA 58.941 40.000 4.49 1.84 36.80 2.85
119 120 4.887655 CACCCTTTAACAAGAGTCAAGGTT 59.112 41.667 4.49 2.65 36.80 3.50
120 121 4.165372 TCACCCTTTAACAAGAGTCAAGGT 59.835 41.667 4.49 0.00 36.80 3.50
121 122 4.515567 GTCACCCTTTAACAAGAGTCAAGG 59.484 45.833 0.00 0.00 37.64 3.61
122 123 5.368989 AGTCACCCTTTAACAAGAGTCAAG 58.631 41.667 0.00 0.00 30.57 3.02
123 124 5.367945 AGTCACCCTTTAACAAGAGTCAA 57.632 39.130 0.00 0.00 30.57 3.18
124 125 5.367945 AAGTCACCCTTTAACAAGAGTCA 57.632 39.130 0.00 0.00 30.57 3.41
125 126 5.932883 CCTAAGTCACCCTTTAACAAGAGTC 59.067 44.000 0.00 0.00 34.46 3.36
126 127 5.605488 TCCTAAGTCACCCTTTAACAAGAGT 59.395 40.000 0.00 0.00 34.46 3.24
127 128 6.110411 TCCTAAGTCACCCTTTAACAAGAG 57.890 41.667 0.00 0.00 34.46 2.85
128 129 6.697641 ATCCTAAGTCACCCTTTAACAAGA 57.302 37.500 0.00 0.00 34.46 3.02
129 130 7.168905 AGAATCCTAAGTCACCCTTTAACAAG 58.831 38.462 0.00 0.00 34.46 3.16
130 131 7.086685 AGAATCCTAAGTCACCCTTTAACAA 57.913 36.000 0.00 0.00 34.46 2.83
131 132 6.697641 AGAATCCTAAGTCACCCTTTAACA 57.302 37.500 0.00 0.00 34.46 2.41
132 133 7.166167 TGAAGAATCCTAAGTCACCCTTTAAC 58.834 38.462 0.00 0.00 34.46 2.01
133 134 7.324388 TGAAGAATCCTAAGTCACCCTTTAA 57.676 36.000 0.00 0.00 34.46 1.52
134 135 6.945636 TGAAGAATCCTAAGTCACCCTTTA 57.054 37.500 0.00 0.00 34.46 1.85
135 136 5.843019 TGAAGAATCCTAAGTCACCCTTT 57.157 39.130 0.00 0.00 34.46 3.11
136 137 5.515008 GGTTGAAGAATCCTAAGTCACCCTT 60.515 44.000 0.00 0.00 37.17 3.95
137 138 4.019231 GGTTGAAGAATCCTAAGTCACCCT 60.019 45.833 0.00 0.00 0.00 4.34
138 139 4.262617 GGTTGAAGAATCCTAAGTCACCC 58.737 47.826 0.00 0.00 0.00 4.61
139 140 3.933332 CGGTTGAAGAATCCTAAGTCACC 59.067 47.826 0.00 0.00 0.00 4.02
140 141 4.566987 ACGGTTGAAGAATCCTAAGTCAC 58.433 43.478 0.00 0.00 0.00 3.67
141 142 4.884668 ACGGTTGAAGAATCCTAAGTCA 57.115 40.909 0.00 0.00 0.00 3.41
142 143 4.995487 ACAACGGTTGAAGAATCCTAAGTC 59.005 41.667 26.39 0.00 0.00 3.01
143 144 4.969484 ACAACGGTTGAAGAATCCTAAGT 58.031 39.130 26.39 0.00 0.00 2.24
144 145 5.063564 GCTACAACGGTTGAAGAATCCTAAG 59.936 44.000 26.39 8.74 0.00 2.18
145 146 4.933400 GCTACAACGGTTGAAGAATCCTAA 59.067 41.667 26.39 0.00 0.00 2.69
146 147 4.222145 AGCTACAACGGTTGAAGAATCCTA 59.778 41.667 26.39 5.75 0.00 2.94
147 148 3.008049 AGCTACAACGGTTGAAGAATCCT 59.992 43.478 26.39 9.66 0.00 3.24
148 149 3.335579 AGCTACAACGGTTGAAGAATCC 58.664 45.455 26.39 7.79 0.00 3.01
149 150 3.371285 GGAGCTACAACGGTTGAAGAATC 59.629 47.826 26.39 15.67 0.00 2.52
150 151 3.335579 GGAGCTACAACGGTTGAAGAAT 58.664 45.455 26.39 7.00 0.00 2.40
151 152 2.549349 GGGAGCTACAACGGTTGAAGAA 60.549 50.000 26.39 8.46 0.00 2.52
152 153 1.001633 GGGAGCTACAACGGTTGAAGA 59.998 52.381 26.39 10.55 0.00 2.87
153 154 1.270625 TGGGAGCTACAACGGTTGAAG 60.271 52.381 26.39 1.38 0.00 3.02
154 155 0.759959 TGGGAGCTACAACGGTTGAA 59.240 50.000 26.39 0.15 0.00 2.69
155 156 0.981183 ATGGGAGCTACAACGGTTGA 59.019 50.000 26.39 9.83 0.00 3.18
156 157 1.086696 CATGGGAGCTACAACGGTTG 58.913 55.000 18.81 18.81 0.00 3.77
157 158 0.981183 TCATGGGAGCTACAACGGTT 59.019 50.000 0.00 0.00 0.00 4.44
158 159 0.249398 GTCATGGGAGCTACAACGGT 59.751 55.000 0.00 0.00 0.00 4.83
159 160 0.806102 CGTCATGGGAGCTACAACGG 60.806 60.000 0.00 0.00 0.00 4.44
160 161 1.421410 GCGTCATGGGAGCTACAACG 61.421 60.000 0.00 3.05 0.00 4.10
161 162 1.090052 GGCGTCATGGGAGCTACAAC 61.090 60.000 0.00 0.00 0.00 3.32
162 163 1.220749 GGCGTCATGGGAGCTACAA 59.779 57.895 0.00 0.00 0.00 2.41
163 164 2.731571 GGGCGTCATGGGAGCTACA 61.732 63.158 0.00 0.00 0.00 2.74
164 165 2.109181 GGGCGTCATGGGAGCTAC 59.891 66.667 0.00 0.00 0.00 3.58
165 166 2.041922 AGGGCGTCATGGGAGCTA 60.042 61.111 0.00 0.00 0.00 3.32
166 167 3.474570 GAGGGCGTCATGGGAGCT 61.475 66.667 1.64 0.00 0.00 4.09
167 168 4.554036 GGAGGGCGTCATGGGAGC 62.554 72.222 9.66 0.00 0.00 4.70
168 169 2.765807 AGGAGGGCGTCATGGGAG 60.766 66.667 9.66 0.00 0.00 4.30
169 170 3.083349 CAGGAGGGCGTCATGGGA 61.083 66.667 13.53 0.00 33.07 4.37
170 171 3.391665 GACAGGAGGGCGTCATGGG 62.392 68.421 23.35 2.52 41.51 4.00
171 172 1.903877 AAGACAGGAGGGCGTCATGG 61.904 60.000 23.35 8.31 41.51 3.66
172 173 0.460987 GAAGACAGGAGGGCGTCATG 60.461 60.000 18.93 18.93 42.95 3.07
173 174 0.616111 AGAAGACAGGAGGGCGTCAT 60.616 55.000 9.66 0.00 34.48 3.06
174 175 0.832135 AAGAAGACAGGAGGGCGTCA 60.832 55.000 9.66 0.00 34.48 4.35
175 176 0.321996 AAAGAAGACAGGAGGGCGTC 59.678 55.000 0.00 0.00 0.00 5.19
176 177 0.035458 CAAAGAAGACAGGAGGGCGT 59.965 55.000 0.00 0.00 0.00 5.68
177 178 0.035458 ACAAAGAAGACAGGAGGGCG 59.965 55.000 0.00 0.00 0.00 6.13
178 179 2.155279 GAACAAAGAAGACAGGAGGGC 58.845 52.381 0.00 0.00 0.00 5.19
179 180 2.037251 TCGAACAAAGAAGACAGGAGGG 59.963 50.000 0.00 0.00 0.00 4.30
180 181 3.243907 ACTCGAACAAAGAAGACAGGAGG 60.244 47.826 0.00 0.00 0.00 4.30
181 182 3.738282 CACTCGAACAAAGAAGACAGGAG 59.262 47.826 0.00 0.00 0.00 3.69
182 183 3.492656 CCACTCGAACAAAGAAGACAGGA 60.493 47.826 0.00 0.00 0.00 3.86
183 184 2.802816 CCACTCGAACAAAGAAGACAGG 59.197 50.000 0.00 0.00 0.00 4.00
184 185 3.246226 CACCACTCGAACAAAGAAGACAG 59.754 47.826 0.00 0.00 0.00 3.51
185 186 3.194861 CACCACTCGAACAAAGAAGACA 58.805 45.455 0.00 0.00 0.00 3.41
186 187 2.544267 CCACCACTCGAACAAAGAAGAC 59.456 50.000 0.00 0.00 0.00 3.01
187 188 2.833794 CCACCACTCGAACAAAGAAGA 58.166 47.619 0.00 0.00 0.00 2.87
188 189 1.264288 GCCACCACTCGAACAAAGAAG 59.736 52.381 0.00 0.00 0.00 2.85
189 190 1.305201 GCCACCACTCGAACAAAGAA 58.695 50.000 0.00 0.00 0.00 2.52
190 191 0.534203 GGCCACCACTCGAACAAAGA 60.534 55.000 0.00 0.00 0.00 2.52
191 192 1.515521 GGGCCACCACTCGAACAAAG 61.516 60.000 4.39 0.00 36.50 2.77
192 193 1.527380 GGGCCACCACTCGAACAAA 60.527 57.895 4.39 0.00 36.50 2.83
193 194 2.112297 GGGCCACCACTCGAACAA 59.888 61.111 4.39 0.00 36.50 2.83
194 195 4.308458 CGGGCCACCACTCGAACA 62.308 66.667 4.39 0.00 36.13 3.18
195 196 4.309950 ACGGGCCACCACTCGAAC 62.310 66.667 4.39 0.00 36.13 3.95
196 197 3.998672 GACGGGCCACCACTCGAA 61.999 66.667 4.39 0.00 36.13 3.71
198 199 4.742201 CTGACGGGCCACCACTCG 62.742 72.222 4.39 0.00 36.13 4.18
216 217 0.655733 GACGACCATACGCCATTTGG 59.344 55.000 0.00 0.00 36.70 3.28
217 218 1.327460 CAGACGACCATACGCCATTTG 59.673 52.381 0.00 0.00 36.70 2.32
218 219 1.206132 TCAGACGACCATACGCCATTT 59.794 47.619 0.00 0.00 36.70 2.32
219 220 0.821517 TCAGACGACCATACGCCATT 59.178 50.000 0.00 0.00 36.70 3.16
220 221 0.821517 TTCAGACGACCATACGCCAT 59.178 50.000 0.00 0.00 36.70 4.40
221 222 0.821517 ATTCAGACGACCATACGCCA 59.178 50.000 0.00 0.00 36.70 5.69
222 223 1.209128 CATTCAGACGACCATACGCC 58.791 55.000 0.00 0.00 36.70 5.68
223 224 0.577269 GCATTCAGACGACCATACGC 59.423 55.000 0.00 0.00 36.70 4.42
224 225 1.921243 TGCATTCAGACGACCATACG 58.079 50.000 0.00 0.00 39.31 3.06
225 226 4.332543 TCAATTGCATTCAGACGACCATAC 59.667 41.667 0.00 0.00 0.00 2.39
226 227 4.512484 TCAATTGCATTCAGACGACCATA 58.488 39.130 0.00 0.00 0.00 2.74
227 228 3.346315 TCAATTGCATTCAGACGACCAT 58.654 40.909 0.00 0.00 0.00 3.55
228 229 2.743664 CTCAATTGCATTCAGACGACCA 59.256 45.455 0.00 0.00 0.00 4.02
229 230 2.476854 GCTCAATTGCATTCAGACGACC 60.477 50.000 0.00 0.00 0.00 4.79
230 231 2.160219 TGCTCAATTGCATTCAGACGAC 59.840 45.455 0.00 0.00 38.12 4.34
231 232 2.425539 TGCTCAATTGCATTCAGACGA 58.574 42.857 0.00 0.00 38.12 4.20
232 233 2.905959 TGCTCAATTGCATTCAGACG 57.094 45.000 0.00 0.00 38.12 4.18
233 234 4.110482 GGATTGCTCAATTGCATTCAGAC 58.890 43.478 0.00 0.00 42.96 3.51
234 235 3.181494 CGGATTGCTCAATTGCATTCAGA 60.181 43.478 0.00 0.00 42.96 3.27
235 236 3.113322 CGGATTGCTCAATTGCATTCAG 58.887 45.455 0.00 0.10 42.96 3.02
236 237 2.754002 TCGGATTGCTCAATTGCATTCA 59.246 40.909 0.00 0.00 42.96 2.57
237 238 3.425577 TCGGATTGCTCAATTGCATTC 57.574 42.857 0.00 2.63 42.96 2.67
238 239 4.116961 CAATCGGATTGCTCAATTGCATT 58.883 39.130 17.01 0.00 42.96 3.56
239 240 3.491964 CCAATCGGATTGCTCAATTGCAT 60.492 43.478 22.35 0.00 42.96 3.96
240 241 2.159212 CCAATCGGATTGCTCAATTGCA 60.159 45.455 22.35 0.00 41.65 4.08
241 242 2.099592 TCCAATCGGATTGCTCAATTGC 59.900 45.455 22.35 0.00 38.92 3.56
242 243 3.379372 AGTCCAATCGGATTGCTCAATTG 59.621 43.478 22.35 9.27 45.33 2.32
243 244 3.624777 AGTCCAATCGGATTGCTCAATT 58.375 40.909 22.35 4.58 45.33 2.32
244 245 3.287867 AGTCCAATCGGATTGCTCAAT 57.712 42.857 22.35 7.29 45.33 2.57
245 246 2.787473 AGTCCAATCGGATTGCTCAA 57.213 45.000 22.35 7.10 45.33 3.02
246 247 2.158957 GGTAGTCCAATCGGATTGCTCA 60.159 50.000 22.35 7.91 45.33 4.26
247 248 2.103263 AGGTAGTCCAATCGGATTGCTC 59.897 50.000 22.35 16.65 45.33 4.26
248 249 2.119495 AGGTAGTCCAATCGGATTGCT 58.881 47.619 22.35 17.26 45.33 3.91
249 250 2.158957 TCAGGTAGTCCAATCGGATTGC 60.159 50.000 22.35 11.65 45.33 3.56
250 251 3.819564 TCAGGTAGTCCAATCGGATTG 57.180 47.619 21.12 21.12 45.33 2.67
251 252 7.579723 GCTTATATCAGGTAGTCCAATCGGATT 60.580 40.741 0.00 0.00 45.33 3.01
252 253 6.127310 GCTTATATCAGGTAGTCCAATCGGAT 60.127 42.308 0.00 0.00 45.33 4.18
253 254 5.185249 GCTTATATCAGGTAGTCCAATCGGA 59.815 44.000 0.00 0.00 39.79 4.55
254 255 5.047306 TGCTTATATCAGGTAGTCCAATCGG 60.047 44.000 0.00 0.00 35.89 4.18
255 256 6.025749 TGCTTATATCAGGTAGTCCAATCG 57.974 41.667 0.00 0.00 35.89 3.34
256 257 7.763528 CAGATGCTTATATCAGGTAGTCCAATC 59.236 40.741 0.00 0.00 35.89 2.67
257 258 7.455953 TCAGATGCTTATATCAGGTAGTCCAAT 59.544 37.037 0.00 0.00 35.89 3.16
258 259 6.782494 TCAGATGCTTATATCAGGTAGTCCAA 59.218 38.462 0.00 0.00 35.89 3.53
259 260 6.314917 TCAGATGCTTATATCAGGTAGTCCA 58.685 40.000 0.00 0.00 35.89 4.02
260 261 6.842437 TCAGATGCTTATATCAGGTAGTCC 57.158 41.667 0.00 0.00 0.00 3.85
261 262 8.310382 ACATTCAGATGCTTATATCAGGTAGTC 58.690 37.037 0.00 0.00 36.72 2.59
262 263 8.200024 ACATTCAGATGCTTATATCAGGTAGT 57.800 34.615 0.00 0.00 36.72 2.73
263 264 8.933807 CAACATTCAGATGCTTATATCAGGTAG 58.066 37.037 0.00 0.00 36.72 3.18
264 265 7.879677 CCAACATTCAGATGCTTATATCAGGTA 59.120 37.037 0.00 0.00 36.72 3.08
265 266 6.713903 CCAACATTCAGATGCTTATATCAGGT 59.286 38.462 0.00 0.00 36.72 4.00
266 267 6.349115 GCCAACATTCAGATGCTTATATCAGG 60.349 42.308 0.00 0.00 36.72 3.86
267 268 6.206048 TGCCAACATTCAGATGCTTATATCAG 59.794 38.462 0.00 0.00 36.72 2.90
268 269 6.016860 GTGCCAACATTCAGATGCTTATATCA 60.017 38.462 0.00 0.00 36.72 2.15
269 270 6.376978 GTGCCAACATTCAGATGCTTATATC 58.623 40.000 0.00 0.00 36.72 1.63
270 271 5.049198 CGTGCCAACATTCAGATGCTTATAT 60.049 40.000 0.00 0.00 36.72 0.86
271 272 4.273235 CGTGCCAACATTCAGATGCTTATA 59.727 41.667 0.00 0.00 36.72 0.98
272 273 3.065786 CGTGCCAACATTCAGATGCTTAT 59.934 43.478 0.00 0.00 36.72 1.73
273 274 2.419673 CGTGCCAACATTCAGATGCTTA 59.580 45.455 0.00 0.00 36.72 3.09
274 275 1.200716 CGTGCCAACATTCAGATGCTT 59.799 47.619 0.00 0.00 36.72 3.91
275 276 0.806868 CGTGCCAACATTCAGATGCT 59.193 50.000 0.00 0.00 36.72 3.79
276 277 0.179156 CCGTGCCAACATTCAGATGC 60.179 55.000 0.00 0.00 36.72 3.91
277 278 1.131126 GACCGTGCCAACATTCAGATG 59.869 52.381 0.00 0.00 39.25 2.90
278 279 1.003580 AGACCGTGCCAACATTCAGAT 59.996 47.619 0.00 0.00 0.00 2.90
279 280 0.396435 AGACCGTGCCAACATTCAGA 59.604 50.000 0.00 0.00 0.00 3.27
280 281 2.002586 CTAGACCGTGCCAACATTCAG 58.997 52.381 0.00 0.00 0.00 3.02
281 282 1.338674 CCTAGACCGTGCCAACATTCA 60.339 52.381 0.00 0.00 0.00 2.57
282 283 1.369625 CCTAGACCGTGCCAACATTC 58.630 55.000 0.00 0.00 0.00 2.67
283 284 0.035439 CCCTAGACCGTGCCAACATT 60.035 55.000 0.00 0.00 0.00 2.71
284 285 0.907704 TCCCTAGACCGTGCCAACAT 60.908 55.000 0.00 0.00 0.00 2.71
285 286 1.534476 TCCCTAGACCGTGCCAACA 60.534 57.895 0.00 0.00 0.00 3.33
286 287 1.079336 GTCCCTAGACCGTGCCAAC 60.079 63.158 0.00 0.00 37.00 3.77
287 288 3.384348 GTCCCTAGACCGTGCCAA 58.616 61.111 0.00 0.00 37.00 4.52
295 296 3.498334 CACCATAGGTAGGTCCCTAGAC 58.502 54.545 0.00 0.00 40.37 2.59
296 297 2.449730 CCACCATAGGTAGGTCCCTAGA 59.550 54.545 0.00 0.00 40.37 2.43
297 298 2.179424 ACCACCATAGGTAGGTCCCTAG 59.821 54.545 0.00 0.00 40.37 3.02
298 299 2.090943 CACCACCATAGGTAGGTCCCTA 60.091 54.545 7.15 0.00 40.77 3.53
299 300 1.024536 ACCACCATAGGTAGGTCCCT 58.975 55.000 5.00 0.00 40.98 4.20
300 301 1.129058 CACCACCATAGGTAGGTCCC 58.871 60.000 7.15 0.00 40.77 4.46
301 302 1.129058 CCACCACCATAGGTAGGTCC 58.871 60.000 7.15 0.00 40.77 4.46
302 303 1.485066 CACCACCACCATAGGTAGGTC 59.515 57.143 7.15 0.00 40.77 3.85
303 304 1.580059 CACCACCACCATAGGTAGGT 58.420 55.000 5.00 5.00 40.77 3.08
304 305 0.837272 CCACCACCACCATAGGTAGG 59.163 60.000 0.00 0.00 40.77 3.18
305 306 0.837272 CCCACCACCACCATAGGTAG 59.163 60.000 0.00 0.00 40.77 3.18
306 307 0.119561 ACCCACCACCACCATAGGTA 59.880 55.000 0.00 0.00 40.77 3.08
307 308 1.151677 ACCCACCACCACCATAGGT 60.152 57.895 0.00 0.00 44.48 3.08
308 309 1.607612 GACCCACCACCACCATAGG 59.392 63.158 0.00 0.00 0.00 2.57
309 310 1.607612 GGACCCACCACCACCATAG 59.392 63.158 0.00 0.00 38.79 2.23
310 311 1.926489 GGGACCCACCACCACCATA 60.926 63.158 5.33 0.00 41.20 2.74
311 312 3.264845 GGGACCCACCACCACCAT 61.265 66.667 5.33 0.00 41.20 3.55
312 313 4.845307 TGGGACCCACCACCACCA 62.845 66.667 9.95 0.00 41.20 4.17
313 314 3.264845 ATGGGACCCACCACCACC 61.265 66.667 17.78 0.00 44.72 4.61
314 315 2.035626 CATGGGACCCACCACCAC 59.964 66.667 17.78 0.00 44.72 4.16
315 316 2.451493 ACATGGGACCCACCACCA 60.451 61.111 17.78 0.00 44.72 4.17
316 317 2.035626 CACATGGGACCCACCACC 59.964 66.667 17.78 0.00 44.72 4.61
317 318 2.035626 CCACATGGGACCCACCAC 59.964 66.667 17.78 0.00 44.72 4.16
327 328 1.758280 CATCATTTGGGACCCACATGG 59.242 52.381 30.82 17.26 40.79 3.66
328 329 1.758280 CCATCATTTGGGACCCACATG 59.242 52.381 27.53 27.53 41.51 3.21
329 330 2.163810 CCATCATTTGGGACCCACAT 57.836 50.000 14.59 10.06 42.33 3.21
330 331 3.687847 CCATCATTTGGGACCCACA 57.312 52.632 14.59 7.45 42.33 4.17
338 339 2.102578 GGTCAAGGACCCATCATTTGG 58.897 52.381 4.00 0.00 46.19 3.28
349 350 5.703310 TCTATTAGAGGTAGGGTCAAGGAC 58.297 45.833 0.00 0.00 0.00 3.85
350 351 6.104243 TCATCTATTAGAGGTAGGGTCAAGGA 59.896 42.308 5.35 0.00 0.00 3.36
351 352 6.209788 GTCATCTATTAGAGGTAGGGTCAAGG 59.790 46.154 5.35 0.00 0.00 3.61
352 353 6.209788 GGTCATCTATTAGAGGTAGGGTCAAG 59.790 46.154 5.35 0.00 0.00 3.02
353 354 6.075984 GGTCATCTATTAGAGGTAGGGTCAA 58.924 44.000 5.35 0.00 0.00 3.18
354 355 5.375956 AGGTCATCTATTAGAGGTAGGGTCA 59.624 44.000 5.35 0.00 0.00 4.02
355 356 5.894653 AGGTCATCTATTAGAGGTAGGGTC 58.105 45.833 5.35 0.00 0.00 4.46
356 357 5.375956 TGAGGTCATCTATTAGAGGTAGGGT 59.624 44.000 5.35 0.00 0.00 4.34
357 358 5.893500 TGAGGTCATCTATTAGAGGTAGGG 58.106 45.833 5.35 0.00 0.00 3.53
358 359 7.639113 GATGAGGTCATCTATTAGAGGTAGG 57.361 44.000 11.98 0.00 46.88 3.18
377 378 1.269517 GCTTCTACCGCCTCTGATGAG 60.270 57.143 0.00 0.00 39.92 2.90
378 379 0.747255 GCTTCTACCGCCTCTGATGA 59.253 55.000 0.00 0.00 0.00 2.92
379 380 0.249657 GGCTTCTACCGCCTCTGATG 60.250 60.000 0.00 0.00 44.17 3.07
380 381 2.128729 GGCTTCTACCGCCTCTGAT 58.871 57.895 0.00 0.00 44.17 2.90
381 382 3.617368 GGCTTCTACCGCCTCTGA 58.383 61.111 0.00 0.00 44.17 3.27
387 388 1.269831 CCTCACTATGGCTTCTACCGC 60.270 57.143 0.00 0.00 0.00 5.68
388 389 2.294791 CTCCTCACTATGGCTTCTACCG 59.705 54.545 0.00 0.00 0.00 4.02
389 390 2.630580 CCTCCTCACTATGGCTTCTACC 59.369 54.545 0.00 0.00 0.00 3.18
390 391 2.036604 GCCTCCTCACTATGGCTTCTAC 59.963 54.545 0.00 0.00 41.92 2.59
391 392 2.320781 GCCTCCTCACTATGGCTTCTA 58.679 52.381 0.00 0.00 41.92 2.10
392 393 1.127343 GCCTCCTCACTATGGCTTCT 58.873 55.000 0.00 0.00 41.92 2.85
393 394 0.107643 GGCCTCCTCACTATGGCTTC 59.892 60.000 0.00 0.00 44.36 3.86
394 395 1.690219 CGGCCTCCTCACTATGGCTT 61.690 60.000 0.00 0.00 44.36 4.35
395 396 2.136878 CGGCCTCCTCACTATGGCT 61.137 63.158 0.00 0.00 44.36 4.75
396 397 2.423446 CGGCCTCCTCACTATGGC 59.577 66.667 0.00 0.00 44.22 4.40
397 398 3.142393 CCGGCCTCCTCACTATGG 58.858 66.667 0.00 0.00 0.00 2.74
398 399 2.423446 GCCGGCCTCCTCACTATG 59.577 66.667 18.11 0.00 0.00 2.23
399 400 2.844839 GGCCGGCCTCCTCACTAT 60.845 66.667 38.76 0.00 0.00 2.12
433 434 2.700371 GCTCCCATAAAATTCAAGGGGG 59.300 50.000 9.21 5.54 43.16 5.40
434 435 2.362077 CGCTCCCATAAAATTCAAGGGG 59.638 50.000 3.83 3.83 40.02 4.79
435 436 3.287222 TCGCTCCCATAAAATTCAAGGG 58.713 45.455 0.00 0.00 40.98 3.95
436 437 4.035675 GTCTCGCTCCCATAAAATTCAAGG 59.964 45.833 0.00 0.00 0.00 3.61
437 438 4.035675 GGTCTCGCTCCCATAAAATTCAAG 59.964 45.833 0.00 0.00 0.00 3.02
438 439 3.945285 GGTCTCGCTCCCATAAAATTCAA 59.055 43.478 0.00 0.00 0.00 2.69
439 440 3.199946 AGGTCTCGCTCCCATAAAATTCA 59.800 43.478 0.00 0.00 0.00 2.57
440 441 3.809905 AGGTCTCGCTCCCATAAAATTC 58.190 45.455 0.00 0.00 0.00 2.17
441 442 3.933861 AGGTCTCGCTCCCATAAAATT 57.066 42.857 0.00 0.00 0.00 1.82
442 443 5.367945 TTTAGGTCTCGCTCCCATAAAAT 57.632 39.130 0.00 0.00 0.00 1.82
443 444 4.829872 TTTAGGTCTCGCTCCCATAAAA 57.170 40.909 0.00 0.00 0.00 1.52
444 445 4.383770 CCTTTTAGGTCTCGCTCCCATAAA 60.384 45.833 0.00 0.00 0.00 1.40
445 446 3.134081 CCTTTTAGGTCTCGCTCCCATAA 59.866 47.826 0.00 0.00 0.00 1.90
446 447 2.698797 CCTTTTAGGTCTCGCTCCCATA 59.301 50.000 0.00 0.00 0.00 2.74
447 448 1.486726 CCTTTTAGGTCTCGCTCCCAT 59.513 52.381 0.00 0.00 0.00 4.00
448 449 0.902531 CCTTTTAGGTCTCGCTCCCA 59.097 55.000 0.00 0.00 0.00 4.37
449 450 3.762674 CCTTTTAGGTCTCGCTCCC 57.237 57.895 0.00 0.00 0.00 4.30
459 460 8.631480 AACTTACATGGTCTTTACCTTTTAGG 57.369 34.615 0.00 0.00 46.91 2.69
460 461 8.727910 GGAACTTACATGGTCTTTACCTTTTAG 58.272 37.037 0.00 0.00 46.91 1.85
461 462 8.219178 TGGAACTTACATGGTCTTTACCTTTTA 58.781 33.333 0.00 0.00 46.91 1.52
462 463 7.064229 TGGAACTTACATGGTCTTTACCTTTT 58.936 34.615 0.00 0.00 46.91 2.27
463 464 6.607019 TGGAACTTACATGGTCTTTACCTTT 58.393 36.000 0.00 0.00 46.91 3.11
464 465 6.195600 TGGAACTTACATGGTCTTTACCTT 57.804 37.500 0.00 0.00 46.91 3.50
465 466 5.836024 TGGAACTTACATGGTCTTTACCT 57.164 39.130 0.00 0.00 46.91 3.08
466 467 7.312899 CAAATGGAACTTACATGGTCTTTACC 58.687 38.462 0.00 0.00 46.98 2.85
467 468 6.806739 GCAAATGGAACTTACATGGTCTTTAC 59.193 38.462 0.00 0.00 0.00 2.01
468 469 6.071616 GGCAAATGGAACTTACATGGTCTTTA 60.072 38.462 0.00 0.00 0.00 1.85
469 470 5.279456 GGCAAATGGAACTTACATGGTCTTT 60.279 40.000 0.00 0.00 0.00 2.52
470 471 4.220602 GGCAAATGGAACTTACATGGTCTT 59.779 41.667 0.00 0.00 0.00 3.01
471 472 3.763897 GGCAAATGGAACTTACATGGTCT 59.236 43.478 0.00 0.00 0.00 3.85
472 473 3.509575 TGGCAAATGGAACTTACATGGTC 59.490 43.478 0.00 0.00 0.00 4.02
473 474 3.258123 GTGGCAAATGGAACTTACATGGT 59.742 43.478 0.00 0.00 0.00 3.55
485 486 0.314935 GTGGACACTGTGGCAAATGG 59.685 55.000 16.72 0.00 0.00 3.16
492 493 0.464735 TTTTCCCGTGGACACTGTGG 60.465 55.000 13.09 0.00 0.00 4.17
495 496 1.226746 GAGTTTTCCCGTGGACACTG 58.773 55.000 0.56 0.00 28.72 3.66
604 608 5.761165 TCGTTTCCCTCCTTTTGTTTAAG 57.239 39.130 0.00 0.00 0.00 1.85
609 613 3.572682 GGATTTCGTTTCCCTCCTTTTGT 59.427 43.478 0.00 0.00 0.00 2.83
734 744 1.306397 GGGAACGGGTAGGAAGGGA 60.306 63.158 0.00 0.00 0.00 4.20
870 880 4.105727 CGGAGCGAGTCGTAGAGA 57.894 61.111 15.08 0.00 36.95 3.10
918 928 1.153086 CAGGAAATGGGGAGGAGCG 60.153 63.158 0.00 0.00 0.00 5.03
919 929 1.454663 GCAGGAAATGGGGAGGAGC 60.455 63.158 0.00 0.00 0.00 4.70
920 930 1.228510 GGCAGGAAATGGGGAGGAG 59.771 63.158 0.00 0.00 0.00 3.69
921 931 0.850883 AAGGCAGGAAATGGGGAGGA 60.851 55.000 0.00 0.00 0.00 3.71
922 932 0.396278 GAAGGCAGGAAATGGGGAGG 60.396 60.000 0.00 0.00 0.00 4.30
1127 1137 2.587194 GGAGATCACGCGCTGCAT 60.587 61.111 5.73 0.00 0.00 3.96
1171 1182 3.744949 CGCTGCACGCAAAATCAG 58.255 55.556 0.00 0.00 39.08 2.90
1204 1215 1.382695 GAAGATCTCCCCGTCCCCA 60.383 63.158 0.00 0.00 0.00 4.96
1458 1469 3.854666 ACTGGATTCAGAACGTCAGATG 58.145 45.455 8.39 0.00 43.49 2.90
1574 1585 5.470845 ACTGAAATTCGATTCGCCTAAAG 57.529 39.130 0.00 0.00 31.80 1.85
1578 1589 4.504858 AGTAACTGAAATTCGATTCGCCT 58.495 39.130 0.00 0.00 31.80 5.52
1580 1591 5.504755 CACAAGTAACTGAAATTCGATTCGC 59.495 40.000 0.00 0.00 31.80 4.70
1581 1592 5.504755 GCACAAGTAACTGAAATTCGATTCG 59.495 40.000 0.00 0.00 31.80 3.34
1582 1593 5.504755 CGCACAAGTAACTGAAATTCGATTC 59.495 40.000 0.00 0.00 0.00 2.52
1583 1594 5.178623 TCGCACAAGTAACTGAAATTCGATT 59.821 36.000 0.00 0.00 0.00 3.34
1585 1596 4.052608 TCGCACAAGTAACTGAAATTCGA 58.947 39.130 0.00 0.00 0.00 3.71
1676 1699 3.814504 ACATGACCAAAATGAGACCCT 57.185 42.857 0.00 0.00 0.00 4.34
1770 1793 9.202273 GTTGAACACAGCCATAAATTCATTAAA 57.798 29.630 0.00 0.00 0.00 1.52
2070 2099 2.978156 TCAAAGCCTTCTCCATTGGT 57.022 45.000 1.86 0.00 0.00 3.67
3470 3499 9.409312 TCAGTGTTAGCAAAAATCATTTGTATG 57.591 29.630 3.22 0.00 0.00 2.39
3476 3506 7.935338 CACTTCAGTGTTAGCAAAAATCATT 57.065 32.000 0.00 0.00 40.96 2.57
3621 3654 4.212004 TGAATCTCGCAAAACTTCAGTCAG 59.788 41.667 0.00 0.00 0.00 3.51
4250 4283 3.784763 AGGAGGTCATTCAGATGGTCATT 59.215 43.478 0.00 0.00 33.93 2.57
4302 4335 7.056635 ACCCTGGTCATATTCTATCAACAAAG 58.943 38.462 0.00 0.00 0.00 2.77
4410 4443 5.360591 AGGCGACTAACCTCTTTAATCATG 58.639 41.667 0.00 0.00 40.61 3.07
4458 4498 5.296748 GCAAAAATAACATGACCACCAGTT 58.703 37.500 0.00 0.00 0.00 3.16
4460 4500 4.244862 GGCAAAAATAACATGACCACCAG 58.755 43.478 0.00 0.00 0.00 4.00
4465 4505 4.860352 GGTTACGGCAAAAATAACATGACC 59.140 41.667 0.00 0.00 31.66 4.02
4471 4511 5.110940 TCACAGGTTACGGCAAAAATAAC 57.889 39.130 0.00 0.00 0.00 1.89
4525 4565 1.939255 GGCTGATCTGCTTCAACTAGC 59.061 52.381 21.99 5.29 41.59 3.42
4530 4570 0.679002 GCCAGGCTGATCTGCTTCAA 60.679 55.000 21.99 0.00 33.64 2.69
4585 4625 2.008329 GCAGCTTTCTGTGAGAGGATG 58.992 52.381 0.00 0.00 42.29 3.51
4624 4664 0.247736 GGAACTGTGCCAGACGATCT 59.752 55.000 0.00 0.00 35.18 2.75
4727 4768 0.831307 ACTTCCTCATTACCCTCGGC 59.169 55.000 0.00 0.00 0.00 5.54
4830 4871 2.672961 TCTATGGGTTCAGAACTGCG 57.327 50.000 13.13 0.00 0.00 5.18
4922 4963 0.602638 GCACACCATGGAACGACTCA 60.603 55.000 21.47 0.00 0.00 3.41
4948 5182 5.007039 CACATGGATTGAATGGAAGTACGAG 59.993 44.000 0.00 0.00 0.00 4.18
4959 5193 7.280876 GCGGATATACATACACATGGATTGAAT 59.719 37.037 0.00 0.00 36.98 2.57
5047 5281 2.268298 GGACTAAAGCGAATCAGCGAA 58.732 47.619 0.00 0.00 43.00 4.70
5144 5378 6.400727 CGGTCAACGTAGAGAAAATACAAAGG 60.401 42.308 0.00 0.00 37.93 3.11
5233 5474 3.692101 CCCCACTCGTGCAATGTTTTATA 59.308 43.478 0.00 0.00 0.00 0.98
5311 5554 3.575630 TGCTCAATGACAGTACTCGTTC 58.424 45.455 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.