Multiple sequence alignment - TraesCS3B01G255200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G255200 chr3B 100.000 4877 0 0 1 4877 411508805 411503929 0.000000e+00 9007.0
1 TraesCS3B01G255200 chr3B 86.092 1891 126 45 2161 3981 479495685 479497508 0.000000e+00 1908.0
2 TraesCS3B01G255200 chr3B 84.472 644 79 10 4158 4791 479501081 479501713 2.490000e-172 616.0
3 TraesCS3B01G255200 chr3B 84.581 454 28 16 970 1388 479494749 479495195 3.510000e-111 412.0
4 TraesCS3B01G255200 chr3B 89.032 310 16 9 1519 1812 803634562 803634255 7.710000e-98 368.0
5 TraesCS3B01G255200 chr3B 81.500 200 18 9 1813 2006 479495384 479495570 3.930000e-31 147.0
6 TraesCS3B01G255200 chr3B 93.548 93 6 0 4785 4877 264169820 264169912 6.580000e-29 139.0
7 TraesCS3B01G255200 chr3D 97.633 2155 34 7 1809 3957 309688985 309691128 0.000000e+00 3681.0
8 TraesCS3B01G255200 chr3D 88.636 1804 127 32 2161 3929 367358545 367360305 0.000000e+00 2124.0
9 TraesCS3B01G255200 chr3D 93.416 729 39 4 4158 4877 309693467 309694195 0.000000e+00 1072.0
10 TraesCS3B01G255200 chr3D 89.299 813 81 5 10 817 53409404 53408593 0.000000e+00 1014.0
11 TraesCS3B01G255200 chr3D 88.929 822 85 5 1 817 554221770 554222590 0.000000e+00 1009.0
12 TraesCS3B01G255200 chr3D 90.347 518 29 13 819 1316 309688136 309688652 0.000000e+00 660.0
13 TraesCS3B01G255200 chr3D 91.571 261 7 6 993 1238 367357132 367357392 3.610000e-91 346.0
14 TraesCS3B01G255200 chr3D 92.814 167 3 2 1325 1483 309688758 309688923 2.940000e-57 233.0
15 TraesCS3B01G255200 chr3D 89.308 159 15 2 3984 4141 562204803 562204646 1.070000e-46 198.0
16 TraesCS3B01G255200 chr3D 89.542 153 15 1 3985 4136 45807439 45807287 4.980000e-45 193.0
17 TraesCS3B01G255200 chr3D 91.398 93 8 0 4785 4877 336975510 336975602 1.420000e-25 128.0
18 TraesCS3B01G255200 chr3D 91.398 93 8 0 4785 4877 496724413 496724321 1.420000e-25 128.0
19 TraesCS3B01G255200 chr3D 94.118 68 4 0 3914 3981 367360324 367360391 2.400000e-18 104.0
20 TraesCS3B01G255200 chr3D 97.222 36 1 0 1489 1524 309688953 309688988 1.470000e-05 62.1
21 TraesCS3B01G255200 chr3A 96.701 2031 49 8 1947 3972 429462588 429464605 0.000000e+00 3363.0
22 TraesCS3B01G255200 chr3A 86.751 1887 142 47 2161 3981 489566759 489568603 0.000000e+00 2001.0
23 TraesCS3B01G255200 chr3A 92.857 728 39 3 4158 4876 429465124 429465847 0.000000e+00 1044.0
24 TraesCS3B01G255200 chr3A 99.119 227 2 0 959 1185 429461673 429461899 4.540000e-110 409.0
25 TraesCS3B01G255200 chr3A 87.709 358 10 11 970 1293 489565799 489566156 2.130000e-103 387.0
26 TraesCS3B01G255200 chr3A 89.251 307 16 9 1523 1813 545355076 545354771 7.710000e-98 368.0
27 TraesCS3B01G255200 chr3A 88.889 306 17 5 1523 1812 713982631 713982327 1.290000e-95 361.0
28 TraesCS3B01G255200 chr3A 81.056 322 39 17 642 942 429461270 429461590 2.270000e-58 237.0
29 TraesCS3B01G255200 chr3A 100.000 95 0 0 1389 1483 429462346 429462440 5.020000e-40 176.0
30 TraesCS3B01G255200 chr3A 100.000 82 0 0 1809 1890 429462500 429462581 8.450000e-33 152.0
31 TraesCS3B01G255200 chr3A 80.296 203 23 13 1813 2006 489566454 489566648 2.370000e-28 137.0
32 TraesCS3B01G255200 chr3A 91.398 93 8 0 4785 4877 42374211 42374119 1.420000e-25 128.0
33 TraesCS3B01G255200 chr2D 90.158 823 73 7 1 817 81323308 81324128 0.000000e+00 1064.0
34 TraesCS3B01G255200 chr2D 89.294 822 82 5 1 817 293151002 293151822 0.000000e+00 1026.0
35 TraesCS3B01G255200 chr2D 89.160 821 82 6 1 817 632332793 632331976 0.000000e+00 1016.0
36 TraesCS3B01G255200 chr2D 88.983 826 80 9 1 819 498811278 498812099 0.000000e+00 1011.0
37 TraesCS3B01G255200 chr2D 87.697 317 21 9 1519 1819 646257748 646257434 2.160000e-93 353.0
38 TraesCS3B01G255200 chr2D 89.744 156 16 0 3981 4136 76630222 76630377 2.980000e-47 200.0
39 TraesCS3B01G255200 chr2D 91.398 93 8 0 4785 4877 443630274 443630366 1.420000e-25 128.0
40 TraesCS3B01G255200 chr5D 89.538 822 80 5 1 817 480982122 480982942 0.000000e+00 1037.0
41 TraesCS3B01G255200 chr5D 89.550 823 78 7 1 817 554158267 554157447 0.000000e+00 1037.0
42 TraesCS3B01G255200 chr5D 89.173 822 82 6 1 817 545940225 545941044 0.000000e+00 1018.0
43 TraesCS3B01G255200 chr5D 91.667 156 13 0 3981 4136 272358890 272359045 2.960000e-52 217.0
44 TraesCS3B01G255200 chr5D 91.026 156 14 0 3981 4136 411723210 411723365 1.380000e-50 211.0
45 TraesCS3B01G255200 chr5D 88.235 153 17 1 3984 4136 58305476 58305325 1.080000e-41 182.0
46 TraesCS3B01G255200 chr5D 91.398 93 8 0 4785 4877 73719347 73719439 1.420000e-25 128.0
47 TraesCS3B01G255200 chr5D 90.323 93 9 0 4785 4877 67313274 67313182 6.630000e-24 122.0
48 TraesCS3B01G255200 chr5D 90.217 92 9 0 4785 4876 391297806 391297715 2.380000e-23 121.0
49 TraesCS3B01G255200 chr4D 88.818 313 18 9 1523 1819 444466643 444466332 7.710000e-98 368.0
50 TraesCS3B01G255200 chr4D 91.398 93 7 1 4785 4877 171992173 171992264 5.120000e-25 126.0
51 TraesCS3B01G255200 chr4D 90.323 93 9 0 4785 4877 289581339 289581431 6.630000e-24 122.0
52 TraesCS3B01G255200 chr4D 89.247 93 9 1 4785 4877 363704823 363704914 1.110000e-21 115.0
53 TraesCS3B01G255200 chr4D 88.172 93 11 0 4785 4877 43559769 43559677 1.430000e-20 111.0
54 TraesCS3B01G255200 chr4D 88.172 93 11 0 4785 4877 192743499 192743407 1.430000e-20 111.0
55 TraesCS3B01G255200 chr4D 95.918 49 1 1 4005 4053 56023692 56023739 1.460000e-10 78.7
56 TraesCS3B01G255200 chr4D 93.750 48 3 0 4005 4052 50073820 50073773 6.770000e-09 73.1
57 TraesCS3B01G255200 chr1B 89.032 310 17 8 1519 1812 646916936 646916628 7.710000e-98 368.0
58 TraesCS3B01G255200 chr1B 89.320 103 7 2 1141 1239 105092976 105093078 5.120000e-25 126.0
59 TraesCS3B01G255200 chr4B 88.997 309 17 9 1520 1812 655777206 655776899 2.770000e-97 366.0
60 TraesCS3B01G255200 chr4B 89.098 266 14 6 1562 1812 511372079 511372344 2.830000e-82 316.0
61 TraesCS3B01G255200 chr4B 90.909 154 12 2 3985 4136 666070814 666070661 6.400000e-49 206.0
62 TraesCS3B01G255200 chrUn 88.710 310 17 10 1519 1812 12151337 12151030 3.590000e-96 363.0
63 TraesCS3B01G255200 chrUn 88.710 310 17 10 1519 1812 285687487 285687180 3.590000e-96 363.0
64 TraesCS3B01G255200 chrUn 87.701 187 19 2 1053 1236 8110903 8111088 1.060000e-51 215.0
65 TraesCS3B01G255200 chrUn 93.056 72 5 0 3981 4052 99396838 99396909 6.680000e-19 106.0
66 TraesCS3B01G255200 chrUn 87.342 79 10 0 4785 4863 10103678 10103756 1.870000e-14 91.6
67 TraesCS3B01G255200 chrUn 87.342 79 10 0 4785 4863 43429424 43429346 1.870000e-14 91.6
68 TraesCS3B01G255200 chrUn 91.176 68 4 2 3981 4047 50823481 50823547 1.870000e-14 91.6
69 TraesCS3B01G255200 chrUn 87.342 79 10 0 4785 4863 69830144 69830066 1.870000e-14 91.6
70 TraesCS3B01G255200 chrUn 87.342 79 10 0 4785 4863 93805775 93805853 1.870000e-14 91.6
71 TraesCS3B01G255200 chrUn 87.342 79 10 0 4785 4863 318043447 318043525 1.870000e-14 91.6
72 TraesCS3B01G255200 chrUn 87.342 79 10 0 4785 4863 322254447 322254525 1.870000e-14 91.6
73 TraesCS3B01G255200 chrUn 87.342 79 10 0 4785 4863 395165997 395166075 1.870000e-14 91.6
74 TraesCS3B01G255200 chrUn 87.342 79 10 0 4785 4863 441596686 441596608 1.870000e-14 91.6
75 TraesCS3B01G255200 chrUn 83.871 93 15 0 4785 4877 28725315 28725223 6.720000e-14 89.8
76 TraesCS3B01G255200 chr1D 88.498 313 18 10 1517 1812 128502679 128502368 3.590000e-96 363.0
77 TraesCS3B01G255200 chr1D 88.235 187 18 2 1053 1236 460789475 460789660 2.290000e-53 220.0
78 TraesCS3B01G255200 chr1D 91.870 123 10 0 3978 4100 143995526 143995648 6.490000e-39 172.0
79 TraesCS3B01G255200 chr1D 86.624 157 18 2 3981 4136 428663174 428663328 2.330000e-38 171.0
80 TraesCS3B01G255200 chr1D 86.452 155 18 2 3984 4136 74420193 74420040 3.020000e-37 167.0
81 TraesCS3B01G255200 chr1D 93.548 93 6 0 4785 4877 109441897 109441989 6.580000e-29 139.0
82 TraesCS3B01G255200 chr1D 91.398 93 8 0 4785 4877 228078957 228079049 1.420000e-25 128.0
83 TraesCS3B01G255200 chr1D 90.323 93 9 0 4785 4877 131404158 131404066 6.630000e-24 122.0
84 TraesCS3B01G255200 chr1D 94.667 75 4 0 3984 4058 33412693 33412619 3.080000e-22 117.0
85 TraesCS3B01G255200 chr1D 88.172 93 11 0 4785 4877 247844768 247844676 1.430000e-20 111.0
86 TraesCS3B01G255200 chr1D 89.286 84 9 0 4785 4868 10413191 10413274 6.680000e-19 106.0
87 TraesCS3B01G255200 chr1D 87.097 93 12 0 4785 4877 134072778 134072686 6.680000e-19 106.0
88 TraesCS3B01G255200 chr1D 87.356 87 11 0 4785 4871 367620379 367620465 3.110000e-17 100.0
89 TraesCS3B01G255200 chr1D 86.022 93 12 1 4785 4877 141948943 141948852 1.120000e-16 99.0
90 TraesCS3B01G255200 chr1D 84.946 93 14 0 4785 4877 115565198 115565290 1.450000e-15 95.3
91 TraesCS3B01G255200 chr6B 88.889 306 17 9 1523 1812 26600404 26600100 1.290000e-95 361.0
92 TraesCS3B01G255200 chr6B 84.502 271 23 7 1514 1767 679451501 679451769 2.910000e-62 250.0
93 TraesCS3B01G255200 chr6B 90.850 153 14 0 3984 4136 646139384 646139232 6.400000e-49 206.0
94 TraesCS3B01G255200 chr2A 85.443 316 21 14 1522 1812 779621231 779620916 6.130000e-79 305.0
95 TraesCS3B01G255200 chr2A 85.551 263 21 10 1522 1767 779509537 779509275 4.840000e-65 259.0
96 TraesCS3B01G255200 chr2A 81.250 112 18 3 1523 1632 724125055 724124945 2.420000e-13 87.9
97 TraesCS3B01G255200 chr4A 84.194 310 32 8 1519 1812 554647073 554647381 7.990000e-73 285.0
98 TraesCS3B01G255200 chr2B 92.810 153 11 0 3984 4136 800248987 800248835 6.350000e-54 222.0
99 TraesCS3B01G255200 chr7D 90.741 162 15 0 3975 4136 44648277 44648438 2.960000e-52 217.0
100 TraesCS3B01G255200 chr7D 93.151 146 9 1 3984 4129 139827763 139827619 3.820000e-51 213.0
101 TraesCS3B01G255200 chr7D 90.385 156 14 1 3981 4136 112133540 112133694 2.300000e-48 204.0
102 TraesCS3B01G255200 chr1A 91.667 156 13 0 3981 4136 530741602 530741757 2.960000e-52 217.0
103 TraesCS3B01G255200 chr1A 87.701 187 19 2 1053 1236 551875146 551875331 1.060000e-51 215.0
104 TraesCS3B01G255200 chr7B 90.850 153 14 0 3984 4136 36467603 36467451 6.400000e-49 206.0
105 TraesCS3B01G255200 chr7A 87.121 132 14 3 1523 1653 719788220 719788349 3.930000e-31 147.0
106 TraesCS3B01G255200 chr6D 89.247 93 10 0 4785 4877 260077637 260077729 3.080000e-22 117.0
107 TraesCS3B01G255200 chr6D 93.056 72 5 0 3981 4052 402755884 402755955 6.680000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G255200 chr3B 411503929 411508805 4876 True 9007.000000 9007 100.000000 1 4877 1 chr3B.!!$R1 4876
1 TraesCS3B01G255200 chr3B 479494749 479501713 6964 False 770.750000 1908 84.161250 970 4791 4 chr3B.!!$F2 3821
2 TraesCS3B01G255200 chr3D 309688136 309694195 6059 False 1141.620000 3681 94.286400 819 4877 5 chr3D.!!$F3 4058
3 TraesCS3B01G255200 chr3D 53408593 53409404 811 True 1014.000000 1014 89.299000 10 817 1 chr3D.!!$R2 807
4 TraesCS3B01G255200 chr3D 554221770 554222590 820 False 1009.000000 1009 88.929000 1 817 1 chr3D.!!$F2 816
5 TraesCS3B01G255200 chr3D 367357132 367360391 3259 False 858.000000 2124 91.441667 993 3981 3 chr3D.!!$F4 2988
6 TraesCS3B01G255200 chr3A 429461270 429465847 4577 False 896.833333 3363 94.955500 642 4876 6 chr3A.!!$F1 4234
7 TraesCS3B01G255200 chr3A 489565799 489568603 2804 False 841.666667 2001 84.918667 970 3981 3 chr3A.!!$F2 3011
8 TraesCS3B01G255200 chr2D 81323308 81324128 820 False 1064.000000 1064 90.158000 1 817 1 chr2D.!!$F2 816
9 TraesCS3B01G255200 chr2D 293151002 293151822 820 False 1026.000000 1026 89.294000 1 817 1 chr2D.!!$F3 816
10 TraesCS3B01G255200 chr2D 632331976 632332793 817 True 1016.000000 1016 89.160000 1 817 1 chr2D.!!$R1 816
11 TraesCS3B01G255200 chr2D 498811278 498812099 821 False 1011.000000 1011 88.983000 1 819 1 chr2D.!!$F5 818
12 TraesCS3B01G255200 chr5D 480982122 480982942 820 False 1037.000000 1037 89.538000 1 817 1 chr5D.!!$F4 816
13 TraesCS3B01G255200 chr5D 554157447 554158267 820 True 1037.000000 1037 89.550000 1 817 1 chr5D.!!$R4 816
14 TraesCS3B01G255200 chr5D 545940225 545941044 819 False 1018.000000 1018 89.173000 1 817 1 chr5D.!!$F5 816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 942 0.031857 CAGCGGTCCATTGCAAACAA 59.968 50.0 1.71 0.0 40.87 2.83 F
1312 1696 0.179081 GCGCTCGTTTATTCCCCTCT 60.179 55.0 0.00 0.0 0.00 3.69 F
2526 3441 0.834261 TCATGGTGTTCAGGACCGGA 60.834 55.0 9.46 0.0 36.12 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1771 2594 1.247567 CAAGGCCACAAACTCGGATT 58.752 50.000 5.01 0.0 0.00 3.01 R
2661 3576 2.203139 CGCAGGAACACACCCACA 60.203 61.111 0.00 0.0 0.00 4.17 R
4116 7020 0.039074 GGGATCGATGTAGGTCGCAG 60.039 60.000 0.54 0.0 41.22 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 141 3.118454 CCGATGCGTGCCTTCGTT 61.118 61.111 11.60 0.00 38.89 3.85
203 205 2.096909 GTCAACATCGTCTTTGTCCGTG 60.097 50.000 0.00 0.00 0.00 4.94
235 237 1.228337 TGCTGGCAACACTGATGCT 60.228 52.632 10.74 0.00 46.17 3.79
246 248 0.674895 ACTGATGCTTGCCTTCGTCC 60.675 55.000 0.00 0.00 0.00 4.79
261 263 4.953010 TCCACGACGTGTCCCCGA 62.953 66.667 25.18 12.79 0.00 5.14
275 277 2.597217 CCGAGCTTGGCAAACCCA 60.597 61.111 7.18 0.00 43.51 4.51
277 279 1.898574 CGAGCTTGGCAAACCCAGT 60.899 57.895 0.00 0.00 46.39 4.00
285 287 4.025401 CAAACCCAGTGCGACGCC 62.025 66.667 18.69 8.82 0.00 5.68
300 303 2.028484 GCCTCGTCAACACCGTCA 59.972 61.111 0.00 0.00 0.00 4.35
304 307 1.471287 CCTCGTCAACACCGTCATCTA 59.529 52.381 0.00 0.00 0.00 1.98
326 329 1.805945 GGCGCACCACTACTTCGAG 60.806 63.158 10.83 0.00 35.26 4.04
341 344 2.900273 GAGACCACTGCGCCCATA 59.100 61.111 4.18 0.00 0.00 2.74
397 400 2.675772 GACTCCCTCGACACCGGT 60.676 66.667 0.00 0.00 36.24 5.28
412 415 2.888111 GGTTACCCCGACTCGACC 59.112 66.667 0.00 0.00 0.00 4.79
413 416 2.714991 GGTTACCCCGACTCGACCC 61.715 68.421 0.00 0.00 0.00 4.46
414 417 1.680314 GTTACCCCGACTCGACCCT 60.680 63.158 0.00 0.00 0.00 4.34
418 421 3.812019 CCCGACTCGACCCTGACG 61.812 72.222 0.00 0.00 0.00 4.35
445 449 1.940883 TTTCGCACGGCTACCTCGAT 61.941 55.000 0.00 0.00 0.00 3.59
465 469 1.228956 ACGGCTACACCACCCTACA 60.229 57.895 0.00 0.00 39.03 2.74
507 513 3.606687 GACACAAAGGGTTATCATCCGT 58.393 45.455 0.00 0.00 0.00 4.69
521 527 1.531149 CATCCGTTTGAGCAACTCGTT 59.469 47.619 0.00 0.00 32.35 3.85
541 547 2.325484 TGGCTTCCTCTACAGTCAACA 58.675 47.619 0.00 0.00 0.00 3.33
568 574 2.126071 CGCGACACCTTCCACGAT 60.126 61.111 0.00 0.00 0.00 3.73
579 585 2.279517 CCACGATGCTCCCGCTAC 60.280 66.667 0.00 0.00 36.97 3.58
620 626 0.665835 CGTCGGCTGCTATTCTCTCT 59.334 55.000 0.00 0.00 0.00 3.10
624 630 3.316868 GTCGGCTGCTATTCTCTCTAGTT 59.683 47.826 0.00 0.00 0.00 2.24
628 634 5.508825 CGGCTGCTATTCTCTCTAGTTTGAT 60.509 44.000 0.00 0.00 0.00 2.57
637 645 3.340928 TCTCTAGTTTGATCGTCCGACA 58.659 45.455 0.00 0.00 0.00 4.35
751 766 9.213777 TGTAATTTGTCTCCTACTTATCTCCAT 57.786 33.333 0.00 0.00 0.00 3.41
757 772 9.488762 TTGTCTCCTACTTATCTCCATAAAAGA 57.511 33.333 0.00 0.00 0.00 2.52
776 791 3.698289 AGACGTCTTATCCTCCAAGTCA 58.302 45.455 13.58 0.00 0.00 3.41
793 808 9.862371 CTCCAAGTCATGTACTCAATATATACC 57.138 37.037 0.00 0.00 37.50 2.73
796 811 7.406031 AGTCATGTACTCAATATATACCCGG 57.594 40.000 0.00 0.00 30.33 5.73
821 864 3.640029 TCGAGGGTCAATAATACACCTCC 59.360 47.826 0.00 0.00 41.02 4.30
899 942 0.031857 CAGCGGTCCATTGCAAACAA 59.968 50.000 1.71 0.00 40.87 2.83
945 1023 1.543871 CGGTCCAATAATAACCCGGGG 60.544 57.143 27.92 12.73 0.00 5.73
1253 1384 1.418908 CGCATTATCCCCACCTCCCT 61.419 60.000 0.00 0.00 0.00 4.20
1254 1385 0.853530 GCATTATCCCCACCTCCCTT 59.146 55.000 0.00 0.00 0.00 3.95
1255 1386 1.202940 GCATTATCCCCACCTCCCTTC 60.203 57.143 0.00 0.00 0.00 3.46
1311 1695 0.461339 TGCGCTCGTTTATTCCCCTC 60.461 55.000 9.73 0.00 0.00 4.30
1312 1696 0.179081 GCGCTCGTTTATTCCCCTCT 60.179 55.000 0.00 0.00 0.00 3.69
1313 1697 1.854227 CGCTCGTTTATTCCCCTCTC 58.146 55.000 0.00 0.00 0.00 3.20
1314 1698 1.136305 CGCTCGTTTATTCCCCTCTCA 59.864 52.381 0.00 0.00 0.00 3.27
1315 1699 2.799917 CGCTCGTTTATTCCCCTCTCAG 60.800 54.545 0.00 0.00 0.00 3.35
1316 1700 2.827652 CTCGTTTATTCCCCTCTCAGC 58.172 52.381 0.00 0.00 0.00 4.26
1318 1702 3.637229 CTCGTTTATTCCCCTCTCAGCTA 59.363 47.826 0.00 0.00 0.00 3.32
1320 1704 3.718815 GTTTATTCCCCTCTCAGCTACG 58.281 50.000 0.00 0.00 0.00 3.51
1322 1706 2.750141 ATTCCCCTCTCAGCTACGTA 57.250 50.000 0.00 0.00 0.00 3.57
1324 1708 0.917533 TCCCCTCTCAGCTACGTACT 59.082 55.000 0.00 0.00 0.00 2.73
1325 1709 2.121948 TCCCCTCTCAGCTACGTACTA 58.878 52.381 0.00 0.00 0.00 1.82
1330 1809 4.442612 CCCTCTCAGCTACGTACTACTGTA 60.443 50.000 12.69 0.00 0.00 2.74
1368 1848 4.764771 TCCCCTTGCTGCATGCCC 62.765 66.667 16.68 6.88 42.00 5.36
1532 2312 5.367352 TGTGTTTTTCTAAGTACTCCCTCCA 59.633 40.000 0.00 0.00 0.00 3.86
1536 2316 8.002459 TGTTTTTCTAAGTACTCCCTCCATTTT 58.998 33.333 0.00 0.00 0.00 1.82
1549 2329 7.505923 ACTCCCTCCATTTTTATATACAAAGCC 59.494 37.037 0.98 0.00 0.00 4.35
1550 2330 7.358263 TCCCTCCATTTTTATATACAAAGCCA 58.642 34.615 0.98 0.00 0.00 4.75
1551 2331 7.286775 TCCCTCCATTTTTATATACAAAGCCAC 59.713 37.037 0.98 0.00 0.00 5.01
1553 2333 8.695456 CCTCCATTTTTATATACAAAGCCACTT 58.305 33.333 0.98 0.00 0.00 3.16
1554 2334 9.520204 CTCCATTTTTATATACAAAGCCACTTG 57.480 33.333 0.98 0.00 0.00 3.16
1555 2335 9.249053 TCCATTTTTATATACAAAGCCACTTGA 57.751 29.630 0.98 0.00 0.00 3.02
1566 2346 7.944729 ACAAAGCCACTTGAGAATATACATT 57.055 32.000 0.00 0.00 0.00 2.71
1567 2347 8.353423 ACAAAGCCACTTGAGAATATACATTT 57.647 30.769 0.00 0.00 0.00 2.32
1569 2349 9.079833 CAAAGCCACTTGAGAATATACATTTTG 57.920 33.333 0.00 0.00 0.00 2.44
1570 2350 7.944729 AGCCACTTGAGAATATACATTTTGT 57.055 32.000 0.00 0.00 0.00 2.83
1572 2352 9.632638 AGCCACTTGAGAATATACATTTTGTAT 57.367 29.630 5.56 5.56 44.89 2.29
1590 2413 5.483685 TGTATCTATACAAGGCCATCACC 57.516 43.478 5.01 0.00 40.08 4.02
1592 2415 4.630644 ATCTATACAAGGCCATCACCAG 57.369 45.455 5.01 0.00 0.00 4.00
1596 2419 4.796110 ATACAAGGCCATCACCAGTAAT 57.204 40.909 5.01 0.00 0.00 1.89
1597 2420 3.004752 ACAAGGCCATCACCAGTAATC 57.995 47.619 5.01 0.00 0.00 1.75
1600 2423 1.414181 AGGCCATCACCAGTAATCGAG 59.586 52.381 5.01 0.00 0.00 4.04
1604 2427 2.419990 CCATCACCAGTAATCGAGGCAA 60.420 50.000 0.00 0.00 0.00 4.52
1605 2428 3.270027 CATCACCAGTAATCGAGGCAAA 58.730 45.455 0.00 0.00 0.00 3.68
1606 2429 2.972625 TCACCAGTAATCGAGGCAAAG 58.027 47.619 0.00 0.00 0.00 2.77
1608 2431 3.074412 CACCAGTAATCGAGGCAAAGTT 58.926 45.455 0.00 0.00 0.00 2.66
1611 2434 4.694037 ACCAGTAATCGAGGCAAAGTTAAC 59.306 41.667 0.00 0.00 0.00 2.01
1612 2435 4.201685 CCAGTAATCGAGGCAAAGTTAACG 60.202 45.833 0.00 0.00 0.00 3.18
1613 2436 4.624024 CAGTAATCGAGGCAAAGTTAACGA 59.376 41.667 0.00 0.00 0.00 3.85
1614 2437 5.291128 CAGTAATCGAGGCAAAGTTAACGAT 59.709 40.000 0.00 0.00 41.12 3.73
1621 2444 6.592607 TCGAGGCAAAGTTAACGATATTTTCT 59.407 34.615 0.00 0.00 0.00 2.52
1622 2445 6.900299 CGAGGCAAAGTTAACGATATTTTCTC 59.100 38.462 0.00 4.65 0.00 2.87
1623 2446 6.772078 AGGCAAAGTTAACGATATTTTCTCG 58.228 36.000 0.00 0.00 41.77 4.04
1636 2459 9.674824 ACGATATTTTCTCGTACTAATAACCTG 57.325 33.333 0.00 0.00 46.71 4.00
1637 2460 9.674824 CGATATTTTCTCGTACTAATAACCTGT 57.325 33.333 0.00 0.00 0.00 4.00
1652 2475 9.935682 CTAATAACCTGTTTAATACACTGCATG 57.064 33.333 0.00 0.00 32.10 4.06
1653 2476 4.701956 ACCTGTTTAATACACTGCATGC 57.298 40.909 11.82 11.82 32.10 4.06
1664 2487 3.455328 CTGCATGCAGTCAGCTACT 57.545 52.632 34.76 0.00 45.94 2.57
1665 2488 1.735386 CTGCATGCAGTCAGCTACTT 58.265 50.000 34.76 0.00 45.94 2.24
1666 2489 1.664659 CTGCATGCAGTCAGCTACTTC 59.335 52.381 34.76 0.00 45.94 3.01
1667 2490 1.012841 GCATGCAGTCAGCTACTTCC 58.987 55.000 14.21 0.00 45.94 3.46
1668 2491 1.406614 GCATGCAGTCAGCTACTTCCT 60.407 52.381 14.21 0.00 45.94 3.36
1669 2492 2.548875 CATGCAGTCAGCTACTTCCTC 58.451 52.381 0.00 0.00 45.94 3.71
1670 2493 0.898320 TGCAGTCAGCTACTTCCTCC 59.102 55.000 0.00 0.00 45.94 4.30
1671 2494 0.898320 GCAGTCAGCTACTTCCTCCA 59.102 55.000 0.00 0.00 41.15 3.86
1672 2495 1.404851 GCAGTCAGCTACTTCCTCCAC 60.405 57.143 0.00 0.00 41.15 4.02
1673 2496 2.175202 CAGTCAGCTACTTCCTCCACT 58.825 52.381 0.00 0.00 35.76 4.00
1674 2497 2.165437 CAGTCAGCTACTTCCTCCACTC 59.835 54.545 0.00 0.00 35.76 3.51
1675 2498 2.171840 GTCAGCTACTTCCTCCACTCA 58.828 52.381 0.00 0.00 0.00 3.41
1676 2499 2.165437 GTCAGCTACTTCCTCCACTCAG 59.835 54.545 0.00 0.00 0.00 3.35
1677 2500 2.175202 CAGCTACTTCCTCCACTCAGT 58.825 52.381 0.00 0.00 0.00 3.41
1678 2501 2.564947 CAGCTACTTCCTCCACTCAGTT 59.435 50.000 0.00 0.00 0.00 3.16
1679 2502 3.007398 CAGCTACTTCCTCCACTCAGTTT 59.993 47.826 0.00 0.00 0.00 2.66
1680 2503 3.259625 AGCTACTTCCTCCACTCAGTTTC 59.740 47.826 0.00 0.00 0.00 2.78
1681 2504 3.259625 GCTACTTCCTCCACTCAGTTTCT 59.740 47.826 0.00 0.00 0.00 2.52
1682 2505 4.262678 GCTACTTCCTCCACTCAGTTTCTT 60.263 45.833 0.00 0.00 0.00 2.52
1683 2506 4.779993 ACTTCCTCCACTCAGTTTCTTT 57.220 40.909 0.00 0.00 0.00 2.52
1684 2507 4.455606 ACTTCCTCCACTCAGTTTCTTTG 58.544 43.478 0.00 0.00 0.00 2.77
1685 2508 2.851195 TCCTCCACTCAGTTTCTTTGC 58.149 47.619 0.00 0.00 0.00 3.68
1686 2509 2.172505 TCCTCCACTCAGTTTCTTTGCA 59.827 45.455 0.00 0.00 0.00 4.08
1687 2510 3.152341 CCTCCACTCAGTTTCTTTGCAT 58.848 45.455 0.00 0.00 0.00 3.96
1688 2511 3.057736 CCTCCACTCAGTTTCTTTGCATG 60.058 47.826 0.00 0.00 0.00 4.06
1689 2512 2.294233 TCCACTCAGTTTCTTTGCATGC 59.706 45.455 11.82 11.82 0.00 4.06
1690 2513 2.034939 CCACTCAGTTTCTTTGCATGCA 59.965 45.455 18.46 18.46 0.00 3.96
1691 2514 3.305813 CCACTCAGTTTCTTTGCATGCAT 60.306 43.478 23.37 0.58 0.00 3.96
1692 2515 3.673338 CACTCAGTTTCTTTGCATGCATG 59.327 43.478 23.37 22.70 0.00 4.06
1693 2516 3.319972 ACTCAGTTTCTTTGCATGCATGT 59.680 39.130 26.79 1.56 0.00 3.21
1694 2517 3.644823 TCAGTTTCTTTGCATGCATGTG 58.355 40.909 26.79 14.36 0.00 3.21
1695 2518 3.318557 TCAGTTTCTTTGCATGCATGTGA 59.681 39.130 26.79 16.45 0.00 3.58
1696 2519 4.052608 CAGTTTCTTTGCATGCATGTGAA 58.947 39.130 26.79 20.97 0.00 3.18
1697 2520 4.149922 CAGTTTCTTTGCATGCATGTGAAG 59.850 41.667 26.79 26.03 0.00 3.02
1698 2521 4.053295 GTTTCTTTGCATGCATGTGAAGT 58.947 39.130 27.87 0.00 0.00 3.01
1699 2522 5.009911 AGTTTCTTTGCATGCATGTGAAGTA 59.990 36.000 27.87 21.61 0.00 2.24
1700 2523 5.648178 TTCTTTGCATGCATGTGAAGTAT 57.352 34.783 27.87 0.00 0.00 2.12
1701 2524 5.648178 TCTTTGCATGCATGTGAAGTATT 57.352 34.783 27.87 0.00 0.00 1.89
1702 2525 6.756299 TCTTTGCATGCATGTGAAGTATTA 57.244 33.333 27.87 15.73 0.00 0.98
1703 2526 7.155655 TCTTTGCATGCATGTGAAGTATTAA 57.844 32.000 27.87 7.03 0.00 1.40
1704 2527 7.774134 TCTTTGCATGCATGTGAAGTATTAAT 58.226 30.769 27.87 0.00 0.00 1.40
1705 2528 7.703197 TCTTTGCATGCATGTGAAGTATTAATG 59.297 33.333 27.87 4.07 0.00 1.90
1706 2529 6.696441 TGCATGCATGTGAAGTATTAATGA 57.304 33.333 26.79 0.00 0.00 2.57
1707 2530 7.279750 TGCATGCATGTGAAGTATTAATGAT 57.720 32.000 26.79 0.00 0.00 2.45
1708 2531 7.364970 TGCATGCATGTGAAGTATTAATGATC 58.635 34.615 26.79 5.42 0.00 2.92
1709 2532 6.805271 GCATGCATGTGAAGTATTAATGATCC 59.195 38.462 26.79 0.79 0.00 3.36
1710 2533 6.882610 TGCATGTGAAGTATTAATGATCCC 57.117 37.500 0.00 0.00 0.00 3.85
1711 2534 6.363882 TGCATGTGAAGTATTAATGATCCCA 58.636 36.000 0.00 0.00 0.00 4.37
1712 2535 6.832900 TGCATGTGAAGTATTAATGATCCCAA 59.167 34.615 0.00 0.00 0.00 4.12
1713 2536 7.506599 TGCATGTGAAGTATTAATGATCCCAAT 59.493 33.333 0.00 0.00 0.00 3.16
1714 2537 9.013229 GCATGTGAAGTATTAATGATCCCAATA 57.987 33.333 0.00 0.00 0.00 1.90
1728 2551 9.933723 AATGATCCCAATAAACAAGAAGAAAAG 57.066 29.630 0.00 0.00 0.00 2.27
1729 2552 8.477419 TGATCCCAATAAACAAGAAGAAAAGT 57.523 30.769 0.00 0.00 0.00 2.66
1730 2553 8.923270 TGATCCCAATAAACAAGAAGAAAAGTT 58.077 29.630 0.00 0.00 0.00 2.66
1731 2554 9.196552 GATCCCAATAAACAAGAAGAAAAGTTG 57.803 33.333 0.00 0.00 0.00 3.16
1732 2555 8.299990 TCCCAATAAACAAGAAGAAAAGTTGA 57.700 30.769 0.00 0.00 0.00 3.18
1733 2556 8.194769 TCCCAATAAACAAGAAGAAAAGTTGAC 58.805 33.333 0.00 0.00 0.00 3.18
1734 2557 8.197439 CCCAATAAACAAGAAGAAAAGTTGACT 58.803 33.333 0.00 0.00 0.00 3.41
1735 2558 9.586435 CCAATAAACAAGAAGAAAAGTTGACTT 57.414 29.630 0.00 0.00 37.91 3.01
1740 2563 9.974980 AAACAAGAAGAAAAGTTGACTTGTAAA 57.025 25.926 0.00 0.00 44.17 2.01
1769 2592 9.598517 AGGCATTAAATTTTACATTGGTACATG 57.401 29.630 0.00 0.00 39.30 3.21
1776 2599 9.796120 AAATTTTACATTGGTACATGTAATCCG 57.204 29.630 15.63 0.00 39.77 4.18
1778 2601 7.780008 TTTACATTGGTACATGTAATCCGAG 57.220 36.000 15.63 2.72 39.77 4.63
1785 2608 4.331717 GGTACATGTAATCCGAGTTTGTGG 59.668 45.833 7.25 0.00 0.00 4.17
1786 2609 2.747446 ACATGTAATCCGAGTTTGTGGC 59.253 45.455 0.00 0.00 0.00 5.01
1790 2613 1.247567 AATCCGAGTTTGTGGCCTTG 58.752 50.000 3.32 0.00 0.00 3.61
1793 2643 1.349688 TCCGAGTTTGTGGCCTTGTAT 59.650 47.619 3.32 0.00 0.00 2.29
1795 2645 2.676342 CCGAGTTTGTGGCCTTGTATAC 59.324 50.000 3.32 0.00 0.00 1.47
1797 2647 3.749088 CGAGTTTGTGGCCTTGTATACAA 59.251 43.478 17.16 17.16 0.00 2.41
1801 2651 7.061566 AGTTTGTGGCCTTGTATACAAAAAT 57.938 32.000 18.55 5.58 42.52 1.82
1803 2653 6.656632 TTGTGGCCTTGTATACAAAAATGA 57.343 33.333 18.55 0.00 35.15 2.57
1890 2767 6.694447 TCTGATTGGTGTAAAGTGGTACTAC 58.306 40.000 0.19 0.19 0.00 2.73
1891 2768 6.495872 TCTGATTGGTGTAAAGTGGTACTACT 59.504 38.462 5.98 5.98 0.00 2.57
1892 2769 7.670979 TCTGATTGGTGTAAAGTGGTACTACTA 59.329 37.037 12.76 0.00 0.00 1.82
1893 2770 7.605449 TGATTGGTGTAAAGTGGTACTACTAC 58.395 38.462 12.76 8.68 0.00 2.73
1894 2771 7.452501 TGATTGGTGTAAAGTGGTACTACTACT 59.547 37.037 12.76 5.79 41.94 2.57
1895 2772 8.884124 ATTGGTGTAAAGTGGTACTACTACTA 57.116 34.615 12.76 2.28 39.08 1.82
1969 2850 1.060937 CGCAGCCATCAAAGTACGC 59.939 57.895 0.00 0.00 0.00 4.42
2064 2961 3.942130 ATTTCCACCACTAGCAAAAGC 57.058 42.857 0.00 0.00 0.00 3.51
2079 2976 3.802139 GCAAAAGCCAGTTTACTTGGAAC 59.198 43.478 0.00 0.00 0.00 3.62
2526 3441 0.834261 TCATGGTGTTCAGGACCGGA 60.834 55.000 9.46 0.00 36.12 5.14
2614 3529 2.258755 CGTACATTGTGATGTCGAGCA 58.741 47.619 0.00 0.00 42.83 4.26
2661 3576 1.693640 CATCAAGGCCTTCAGGGGT 59.306 57.895 17.29 0.00 35.18 4.95
2942 3899 8.641499 CTTCTAGTATAAGAAGGCTGAACTTG 57.359 38.462 6.36 1.25 45.80 3.16
3029 3988 1.003580 CTTGGAGCTGCTGGAAGGTAA 59.996 52.381 7.01 0.00 0.00 2.85
3234 4217 2.210116 GAACTCTTTTGCTGTCACGGA 58.790 47.619 0.00 0.00 0.00 4.69
3782 4818 3.655276 ACACAATCTTACGGTTCGTCT 57.345 42.857 0.00 0.00 41.54 4.18
4002 6906 5.715434 TTTAAATATATTGCCCGCCTTCC 57.285 39.130 0.00 0.00 0.00 3.46
4003 6907 3.525800 AAATATATTGCCCGCCTTCCT 57.474 42.857 0.00 0.00 0.00 3.36
4005 6909 0.690762 TATATTGCCCGCCTTCCTCC 59.309 55.000 0.00 0.00 0.00 4.30
4007 6911 1.352622 TATTGCCCGCCTTCCTCCAT 61.353 55.000 0.00 0.00 0.00 3.41
4008 6912 2.228841 ATTGCCCGCCTTCCTCCATT 62.229 55.000 0.00 0.00 0.00 3.16
4009 6913 1.567208 TTGCCCGCCTTCCTCCATTA 61.567 55.000 0.00 0.00 0.00 1.90
4011 6915 1.984288 GCCCGCCTTCCTCCATTAGT 61.984 60.000 0.00 0.00 0.00 2.24
4012 6916 0.546598 CCCGCCTTCCTCCATTAGTT 59.453 55.000 0.00 0.00 0.00 2.24
4013 6917 1.475213 CCCGCCTTCCTCCATTAGTTC 60.475 57.143 0.00 0.00 0.00 3.01
4014 6918 1.571919 CGCCTTCCTCCATTAGTTCG 58.428 55.000 0.00 0.00 0.00 3.95
4016 6920 1.485066 GCCTTCCTCCATTAGTTCGGA 59.515 52.381 0.00 0.00 0.00 4.55
4017 6921 2.742204 GCCTTCCTCCATTAGTTCGGAC 60.742 54.545 0.00 0.00 0.00 4.79
4019 6923 3.197983 CCTTCCTCCATTAGTTCGGACTT 59.802 47.826 0.00 0.00 37.33 3.01
4020 6924 4.323562 CCTTCCTCCATTAGTTCGGACTTT 60.324 45.833 0.00 0.00 37.33 2.66
4025 6929 5.648092 CCTCCATTAGTTCGGACTTTTGAAT 59.352 40.000 0.00 0.00 37.33 2.57
4026 6930 6.403636 CCTCCATTAGTTCGGACTTTTGAATG 60.404 42.308 0.00 5.87 37.33 2.67
4027 6931 6.234920 TCCATTAGTTCGGACTTTTGAATGA 58.765 36.000 15.71 3.17 37.33 2.57
4028 6932 6.371548 TCCATTAGTTCGGACTTTTGAATGAG 59.628 38.462 15.71 8.22 37.33 2.90
4029 6933 6.149474 CCATTAGTTCGGACTTTTGAATGAGT 59.851 38.462 15.71 0.00 37.33 3.41
4030 6934 7.308589 CCATTAGTTCGGACTTTTGAATGAGTT 60.309 37.037 15.71 0.00 37.33 3.01
4031 6935 5.424121 AGTTCGGACTTTTGAATGAGTTG 57.576 39.130 0.00 0.00 29.87 3.16
4032 6936 4.275936 AGTTCGGACTTTTGAATGAGTTGG 59.724 41.667 0.00 0.00 29.87 3.77
4033 6937 2.552315 TCGGACTTTTGAATGAGTTGGC 59.448 45.455 0.00 0.00 0.00 4.52
4036 6940 3.305608 GGACTTTTGAATGAGTTGGCTGG 60.306 47.826 0.00 0.00 0.00 4.85
4038 6942 3.571401 ACTTTTGAATGAGTTGGCTGGAG 59.429 43.478 0.00 0.00 0.00 3.86
4039 6943 1.538047 TTGAATGAGTTGGCTGGAGC 58.462 50.000 0.00 0.00 41.14 4.70
4040 6944 0.401356 TGAATGAGTTGGCTGGAGCA 59.599 50.000 0.20 0.00 44.36 4.26
4041 6945 1.005097 TGAATGAGTTGGCTGGAGCAT 59.995 47.619 0.20 0.00 44.36 3.79
4042 6946 1.404391 GAATGAGTTGGCTGGAGCATG 59.596 52.381 0.20 0.00 44.36 4.06
4043 6947 0.622136 ATGAGTTGGCTGGAGCATGA 59.378 50.000 0.00 0.00 44.36 3.07
4044 6948 0.401356 TGAGTTGGCTGGAGCATGAA 59.599 50.000 0.00 0.00 44.36 2.57
4045 6949 1.005097 TGAGTTGGCTGGAGCATGAAT 59.995 47.619 0.00 0.00 44.36 2.57
4046 6950 2.097825 GAGTTGGCTGGAGCATGAATT 58.902 47.619 0.00 0.00 44.36 2.17
4048 6952 3.696051 GAGTTGGCTGGAGCATGAATTTA 59.304 43.478 0.00 0.00 44.36 1.40
4049 6953 4.088634 AGTTGGCTGGAGCATGAATTTAA 58.911 39.130 0.00 0.00 44.36 1.52
4050 6954 4.713321 AGTTGGCTGGAGCATGAATTTAAT 59.287 37.500 0.00 0.00 44.36 1.40
4051 6955 5.893255 AGTTGGCTGGAGCATGAATTTAATA 59.107 36.000 0.00 0.00 44.36 0.98
4052 6956 6.552350 AGTTGGCTGGAGCATGAATTTAATAT 59.448 34.615 0.00 0.00 44.36 1.28
4053 6957 6.335471 TGGCTGGAGCATGAATTTAATATG 57.665 37.500 0.00 0.00 44.36 1.78
4054 6958 5.244402 TGGCTGGAGCATGAATTTAATATGG 59.756 40.000 0.00 0.00 44.36 2.74
4056 6960 6.434028 GGCTGGAGCATGAATTTAATATGGTA 59.566 38.462 0.00 0.00 44.36 3.25
4057 6961 7.123247 GGCTGGAGCATGAATTTAATATGGTAT 59.877 37.037 0.00 0.00 44.36 2.73
4058 6962 8.186821 GCTGGAGCATGAATTTAATATGGTATC 58.813 37.037 0.00 0.00 41.59 2.24
4060 6964 7.336679 TGGAGCATGAATTTAATATGGTATCCG 59.663 37.037 0.00 0.00 33.19 4.18
4061 6965 7.552687 GGAGCATGAATTTAATATGGTATCCGA 59.447 37.037 0.00 0.00 33.19 4.55
4062 6966 8.498054 AGCATGAATTTAATATGGTATCCGAG 57.502 34.615 0.00 0.00 31.45 4.63
4063 6967 7.066284 AGCATGAATTTAATATGGTATCCGAGC 59.934 37.037 0.00 0.00 31.45 5.03
4065 6969 9.599866 CATGAATTTAATATGGTATCCGAGCTA 57.400 33.333 0.00 0.00 0.00 3.32
4067 6971 9.653287 TGAATTTAATATGGTATCCGAGCTAAG 57.347 33.333 0.00 0.00 0.00 2.18
4068 6972 9.871238 GAATTTAATATGGTATCCGAGCTAAGA 57.129 33.333 0.00 0.00 0.00 2.10
4069 6973 9.877178 AATTTAATATGGTATCCGAGCTAAGAG 57.123 33.333 0.00 0.00 0.00 2.85
4070 6974 5.923733 AATATGGTATCCGAGCTAAGAGG 57.076 43.478 0.00 0.00 0.00 3.69
4071 6975 2.750141 TGGTATCCGAGCTAAGAGGT 57.250 50.000 0.00 0.00 0.00 3.85
4072 6976 2.584236 TGGTATCCGAGCTAAGAGGTC 58.416 52.381 0.00 0.00 39.24 3.85
4073 6977 2.175069 TGGTATCCGAGCTAAGAGGTCT 59.825 50.000 4.35 0.00 40.38 3.85
4074 6978 3.224269 GGTATCCGAGCTAAGAGGTCTT 58.776 50.000 4.35 0.00 40.38 3.01
4075 6979 3.004944 GGTATCCGAGCTAAGAGGTCTTG 59.995 52.174 2.32 0.00 40.38 3.02
4076 6980 2.509166 TCCGAGCTAAGAGGTCTTGA 57.491 50.000 2.32 0.00 40.38 3.02
4078 6982 2.096248 CCGAGCTAAGAGGTCTTGAGT 58.904 52.381 2.32 0.00 40.38 3.41
4079 6983 2.494073 CCGAGCTAAGAGGTCTTGAGTT 59.506 50.000 2.32 0.00 40.38 3.01
4082 6986 4.321304 CGAGCTAAGAGGTCTTGAGTTCAA 60.321 45.833 2.32 0.00 40.38 2.69
4093 6997 3.507162 TTGAGTTCAAGATCCTGCCAA 57.493 42.857 0.00 0.00 0.00 4.52
4094 6998 3.726557 TGAGTTCAAGATCCTGCCAAT 57.273 42.857 0.00 0.00 0.00 3.16
4095 6999 3.349927 TGAGTTCAAGATCCTGCCAATG 58.650 45.455 0.00 0.00 0.00 2.82
4096 7000 2.097825 AGTTCAAGATCCTGCCAATGC 58.902 47.619 0.00 0.00 38.26 3.56
4114 7018 7.148154 TGCCAATGCAGTATTAAGTAAAACGAT 60.148 33.333 0.00 0.00 44.23 3.73
4116 7020 9.221775 CCAATGCAGTATTAAGTAAAACGATTC 57.778 33.333 0.00 0.00 0.00 2.52
4117 7021 9.988350 CAATGCAGTATTAAGTAAAACGATTCT 57.012 29.630 0.00 0.00 0.00 2.40
4119 7023 7.461107 TGCAGTATTAAGTAAAACGATTCTGC 58.539 34.615 0.00 0.00 42.09 4.26
4121 7025 7.463648 GCAGTATTAAGTAAAACGATTCTGCGA 60.464 37.037 0.00 0.00 35.10 5.10
4122 7026 7.839837 CAGTATTAAGTAAAACGATTCTGCGAC 59.160 37.037 0.00 0.00 34.83 5.19
4123 7027 5.520022 TTAAGTAAAACGATTCTGCGACC 57.480 39.130 0.00 0.00 34.83 4.79
4124 7028 3.314541 AGTAAAACGATTCTGCGACCT 57.685 42.857 0.00 0.00 34.83 3.85
4125 7029 4.445452 AGTAAAACGATTCTGCGACCTA 57.555 40.909 0.00 0.00 34.83 3.08
4127 7031 2.736144 AAACGATTCTGCGACCTACA 57.264 45.000 0.00 0.00 34.83 2.74
4128 7032 2.961526 AACGATTCTGCGACCTACAT 57.038 45.000 0.00 0.00 34.83 2.29
4129 7033 2.493713 ACGATTCTGCGACCTACATC 57.506 50.000 0.00 0.00 34.83 3.06
4130 7034 1.268589 ACGATTCTGCGACCTACATCG 60.269 52.381 0.00 0.00 45.09 3.84
4131 7035 1.002792 CGATTCTGCGACCTACATCGA 60.003 52.381 0.00 0.00 45.13 3.59
4132 7036 2.350868 CGATTCTGCGACCTACATCGAT 60.351 50.000 0.00 0.00 45.13 3.59
4134 7038 0.952280 TCTGCGACCTACATCGATCC 59.048 55.000 0.00 0.00 45.13 3.36
4136 7040 0.467474 TGCGACCTACATCGATCCCT 60.467 55.000 0.00 0.00 45.13 4.20
4137 7041 1.202842 TGCGACCTACATCGATCCCTA 60.203 52.381 0.00 0.00 45.13 3.53
4138 7042 1.469308 GCGACCTACATCGATCCCTAG 59.531 57.143 0.00 0.00 45.13 3.02
4139 7043 2.780714 CGACCTACATCGATCCCTAGT 58.219 52.381 0.00 0.00 45.13 2.57
4140 7044 2.743126 CGACCTACATCGATCCCTAGTC 59.257 54.545 0.00 0.00 45.13 2.59
4142 7046 4.337145 GACCTACATCGATCCCTAGTCAT 58.663 47.826 0.00 0.00 0.00 3.06
4143 7047 4.337145 ACCTACATCGATCCCTAGTCATC 58.663 47.826 0.00 0.00 0.00 2.92
4144 7048 4.043561 ACCTACATCGATCCCTAGTCATCT 59.956 45.833 0.00 0.00 0.00 2.90
4145 7049 4.638421 CCTACATCGATCCCTAGTCATCTC 59.362 50.000 0.00 0.00 0.00 2.75
4146 7050 4.380843 ACATCGATCCCTAGTCATCTCT 57.619 45.455 0.00 0.00 0.00 3.10
4147 7051 4.078537 ACATCGATCCCTAGTCATCTCTG 58.921 47.826 0.00 0.00 0.00 3.35
4148 7052 2.509569 TCGATCCCTAGTCATCTCTGC 58.490 52.381 0.00 0.00 0.00 4.26
4150 7054 2.603021 GATCCCTAGTCATCTCTGCCA 58.397 52.381 0.00 0.00 0.00 4.92
4151 7055 2.783379 TCCCTAGTCATCTCTGCCAT 57.217 50.000 0.00 0.00 0.00 4.40
4152 7056 3.051940 TCCCTAGTCATCTCTGCCATT 57.948 47.619 0.00 0.00 0.00 3.16
4153 7057 2.702478 TCCCTAGTCATCTCTGCCATTG 59.298 50.000 0.00 0.00 0.00 2.82
4174 10515 0.471617 CTCCCCGGATGCTTCTCAAT 59.528 55.000 0.73 0.00 0.00 2.57
4199 10541 3.186047 CCGCCCGTGCTTTAGACG 61.186 66.667 0.00 0.00 36.56 4.18
4233 10575 2.264124 TCGTCCTCGAAACCCTCAG 58.736 57.895 0.00 0.00 43.34 3.35
4356 10705 1.224870 GGGCCTTTGCTAGGGAGAC 59.775 63.158 0.84 0.00 44.91 3.36
4386 10735 2.493278 CCCGATGCTCTTCATTTTGGTT 59.507 45.455 0.00 0.00 35.05 3.67
4398 10747 5.327616 TCATTTTGGTTATCGACGTCCTA 57.672 39.130 10.58 0.00 0.00 2.94
4412 10761 3.846360 ACGTCCTAAACTCTTTCATCCG 58.154 45.455 0.00 0.00 0.00 4.18
4598 10949 2.031682 CCAACTACAACAAGTGCTCTGC 60.032 50.000 0.00 0.00 0.00 4.26
4601 10952 2.289072 ACTACAACAAGTGCTCTGCGAT 60.289 45.455 0.00 0.00 0.00 4.58
4628 10979 1.267806 CAAGTGTTGTGGTGATCAGGC 59.732 52.381 0.00 0.00 0.00 4.85
4678 11029 2.803817 ATCGCCCACATACCCGTCC 61.804 63.158 0.00 0.00 0.00 4.79
4732 11083 1.546961 ATCCGACGTTGACCTTCTCT 58.453 50.000 3.74 0.00 0.00 3.10
4738 11089 2.872858 GACGTTGACCTTCTCTTGCTTT 59.127 45.455 0.00 0.00 0.00 3.51
4758 11109 2.859165 TTGACAAGCCCGAGAAGAAT 57.141 45.000 0.00 0.00 0.00 2.40
4843 11194 6.776116 TCGAGCTATCTAGTCCCTTATCAAAA 59.224 38.462 0.00 0.00 0.00 2.44
4858 11209 8.317679 CCCTTATCAAAATTTACAATGAACCCA 58.682 33.333 0.00 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 1.218047 GCATGCGTAGACTGGGACA 59.782 57.895 0.00 0.00 0.00 4.02
139 141 3.387091 CCCGGGGACACGTCATGA 61.387 66.667 14.71 0.00 0.00 3.07
188 190 1.973138 CGTACACGGACAAAGACGAT 58.027 50.000 0.00 0.00 35.37 3.73
261 263 2.501602 GCACTGGGTTTGCCAAGCT 61.502 57.895 0.00 0.00 39.54 3.74
285 287 2.516923 GTAGATGACGGTGTTGACGAG 58.483 52.381 0.00 0.00 34.93 4.18
297 299 2.585247 GTGCGCCGGGTAGATGAC 60.585 66.667 4.18 0.00 0.00 3.06
300 303 4.157120 GTGGTGCGCCGGGTAGAT 62.157 66.667 12.58 0.00 37.67 1.98
326 329 0.177141 TAGTTATGGGCGCAGTGGTC 59.823 55.000 10.83 0.00 0.00 4.02
341 344 1.542187 AAGGAGGCGCCGAGTTAGTT 61.542 55.000 23.20 0.00 43.43 2.24
397 400 1.679977 CAGGGTCGAGTCGGGGTAA 60.680 63.158 13.54 0.00 0.00 2.85
412 415 1.850640 CGAAAACACCGTCGTCAGG 59.149 57.895 0.00 0.00 32.61 3.86
413 416 1.200839 GCGAAAACACCGTCGTCAG 59.799 57.895 0.00 0.00 39.46 3.51
414 417 1.518792 TGCGAAAACACCGTCGTCA 60.519 52.632 0.00 0.00 39.46 4.35
418 421 2.247267 CCGTGCGAAAACACCGTC 59.753 61.111 0.00 0.00 37.25 4.79
465 469 0.107116 ATGTCGAGGTAGCCGAGAGT 60.107 55.000 5.87 0.00 36.66 3.24
487 491 3.713826 ACGGATGATAACCCTTTGTGT 57.286 42.857 0.00 0.00 0.00 3.72
507 513 1.333619 GAAGCCAACGAGTTGCTCAAA 59.666 47.619 10.25 0.00 39.16 2.69
521 527 2.037251 GTGTTGACTGTAGAGGAAGCCA 59.963 50.000 0.00 0.00 0.00 4.75
620 626 2.163010 GGAGTGTCGGACGATCAAACTA 59.837 50.000 12.61 0.00 0.00 2.24
624 630 0.526211 CAGGAGTGTCGGACGATCAA 59.474 55.000 12.61 0.00 0.00 2.57
628 634 1.105167 ACAACAGGAGTGTCGGACGA 61.105 55.000 3.34 0.00 35.08 4.20
751 766 6.209986 TGACTTGGAGGATAAGACGTCTTTTA 59.790 38.462 33.82 18.94 37.40 1.52
754 769 4.087182 TGACTTGGAGGATAAGACGTCTT 58.913 43.478 31.70 31.70 39.85 3.01
757 772 3.769844 ACATGACTTGGAGGATAAGACGT 59.230 43.478 0.00 0.00 0.00 4.34
764 779 5.965033 ATTGAGTACATGACTTGGAGGAT 57.035 39.130 0.00 0.00 39.06 3.24
776 791 5.278061 AGGCCGGGTATATATTGAGTACAT 58.722 41.667 2.18 0.00 0.00 2.29
793 808 1.682451 TTATTGACCCTCGAGGCCGG 61.682 60.000 26.87 15.15 40.58 6.13
796 811 3.391049 GTGTATTATTGACCCTCGAGGC 58.609 50.000 26.87 14.03 40.58 4.70
805 820 7.562135 TGTTAGAAGGGAGGTGTATTATTGAC 58.438 38.462 0.00 0.00 0.00 3.18
821 864 2.673833 GTGGTCGTGACTGTTAGAAGG 58.326 52.381 0.00 0.00 0.00 3.46
899 942 3.128349 CGCTGCGTGGGTATTAGTAATT 58.872 45.455 14.93 0.00 0.00 1.40
953 1031 1.377366 GATCTCCAGTCGCGGACTCA 61.377 60.000 6.13 0.00 41.37 3.41
957 1035 1.456196 GGATGATCTCCAGTCGCGGA 61.456 60.000 6.13 0.00 44.26 5.54
1293 1677 0.179081 AGAGGGGAATAAACGAGCGC 60.179 55.000 0.00 0.00 0.00 5.92
1322 1706 6.503560 AGGCTAGATGTCTAGTACAGTAGT 57.496 41.667 16.19 0.00 45.85 2.73
1324 1708 9.863650 AATAAAGGCTAGATGTCTAGTACAGTA 57.136 33.333 16.19 8.13 45.85 2.74
1325 1709 8.770010 AATAAAGGCTAGATGTCTAGTACAGT 57.230 34.615 16.19 6.70 45.85 3.55
1330 1809 6.043358 GGGGAAATAAAGGCTAGATGTCTAGT 59.957 42.308 16.19 2.12 45.85 2.57
1347 1826 1.113788 GCATGCAGCAAGGGGAAATA 58.886 50.000 14.21 0.00 44.79 1.40
1368 1848 2.178890 GCAGAGCCGAGGAATGCAG 61.179 63.158 0.00 0.00 36.88 4.41
1540 2320 9.632638 AATGTATATTCTCAAGTGGCTTTGTAT 57.367 29.630 3.02 0.00 0.00 2.29
1543 2323 9.079833 CAAAATGTATATTCTCAAGTGGCTTTG 57.920 33.333 0.00 0.00 0.00 2.77
1544 2324 8.806146 ACAAAATGTATATTCTCAAGTGGCTTT 58.194 29.630 0.00 0.00 0.00 3.51
1545 2325 8.353423 ACAAAATGTATATTCTCAAGTGGCTT 57.647 30.769 0.00 0.00 0.00 4.35
1546 2326 7.944729 ACAAAATGTATATTCTCAAGTGGCT 57.055 32.000 0.00 0.00 0.00 4.75
1569 2349 5.012148 ACTGGTGATGGCCTTGTATAGATAC 59.988 44.000 3.32 0.00 0.00 2.24
1570 2350 5.155161 ACTGGTGATGGCCTTGTATAGATA 58.845 41.667 3.32 0.00 0.00 1.98
1572 2352 3.384168 ACTGGTGATGGCCTTGTATAGA 58.616 45.455 3.32 0.00 0.00 1.98
1575 2355 4.718961 GATTACTGGTGATGGCCTTGTAT 58.281 43.478 3.32 0.00 0.00 2.29
1577 2357 2.680805 CGATTACTGGTGATGGCCTTGT 60.681 50.000 3.32 0.00 0.00 3.16
1578 2358 1.942657 CGATTACTGGTGATGGCCTTG 59.057 52.381 3.32 0.00 0.00 3.61
1580 2360 1.414181 CTCGATTACTGGTGATGGCCT 59.586 52.381 3.32 0.00 0.00 5.19
1581 2361 1.541233 CCTCGATTACTGGTGATGGCC 60.541 57.143 0.00 0.00 0.00 5.36
1583 2363 1.138859 TGCCTCGATTACTGGTGATGG 59.861 52.381 0.00 0.00 0.00 3.51
1584 2364 2.602257 TGCCTCGATTACTGGTGATG 57.398 50.000 0.00 0.00 0.00 3.07
1589 2412 4.201685 CGTTAACTTTGCCTCGATTACTGG 60.202 45.833 3.71 0.00 0.00 4.00
1590 2413 4.624024 TCGTTAACTTTGCCTCGATTACTG 59.376 41.667 3.71 0.00 0.00 2.74
1592 2415 5.713822 ATCGTTAACTTTGCCTCGATTAC 57.286 39.130 3.71 0.00 35.07 1.89
1596 2419 6.592607 AGAAAATATCGTTAACTTTGCCTCGA 59.407 34.615 3.71 0.00 0.00 4.04
1597 2420 6.772078 AGAAAATATCGTTAACTTTGCCTCG 58.228 36.000 3.71 0.00 0.00 4.63
1611 2434 9.674824 ACAGGTTATTAGTACGAGAAAATATCG 57.325 33.333 0.00 0.00 45.54 2.92
1625 2448 9.681062 ATGCAGTGTATTAAACAGGTTATTAGT 57.319 29.630 0.00 0.00 39.29 2.24
1626 2449 9.935682 CATGCAGTGTATTAAACAGGTTATTAG 57.064 33.333 0.00 0.00 39.29 1.73
1629 2452 6.376864 TGCATGCAGTGTATTAAACAGGTTAT 59.623 34.615 18.46 0.00 39.29 1.89
1630 2453 5.707764 TGCATGCAGTGTATTAAACAGGTTA 59.292 36.000 18.46 0.00 39.29 2.85
1631 2454 4.522405 TGCATGCAGTGTATTAAACAGGTT 59.478 37.500 18.46 0.00 39.29 3.50
1632 2455 4.078537 TGCATGCAGTGTATTAAACAGGT 58.921 39.130 18.46 0.00 39.29 4.00
1633 2456 4.665212 CTGCATGCAGTGTATTAAACAGG 58.335 43.478 34.76 9.31 39.29 4.00
1649 2472 2.548875 GAGGAAGTAGCTGACTGCATG 58.451 52.381 7.11 0.00 45.94 4.06
1650 2473 1.484240 GGAGGAAGTAGCTGACTGCAT 59.516 52.381 7.11 0.00 45.94 3.96
1652 2475 0.898320 TGGAGGAAGTAGCTGACTGC 59.102 55.000 0.00 0.00 38.87 4.40
1653 2476 2.165437 GAGTGGAGGAAGTAGCTGACTG 59.835 54.545 0.00 0.00 38.87 3.51
1655 2478 2.165437 CTGAGTGGAGGAAGTAGCTGAC 59.835 54.545 0.00 0.00 0.00 3.51
1656 2479 2.225142 ACTGAGTGGAGGAAGTAGCTGA 60.225 50.000 0.00 0.00 0.00 4.26
1657 2480 2.175202 ACTGAGTGGAGGAAGTAGCTG 58.825 52.381 0.00 0.00 0.00 4.24
1658 2481 2.614134 ACTGAGTGGAGGAAGTAGCT 57.386 50.000 0.00 0.00 0.00 3.32
1659 2482 3.259625 AGAAACTGAGTGGAGGAAGTAGC 59.740 47.826 0.00 0.00 0.00 3.58
1660 2483 5.476091 AAGAAACTGAGTGGAGGAAGTAG 57.524 43.478 0.00 0.00 0.00 2.57
1661 2484 5.611374 CAAAGAAACTGAGTGGAGGAAGTA 58.389 41.667 0.00 0.00 0.00 2.24
1662 2485 4.455606 CAAAGAAACTGAGTGGAGGAAGT 58.544 43.478 0.00 0.00 0.00 3.01
1663 2486 3.251972 GCAAAGAAACTGAGTGGAGGAAG 59.748 47.826 0.00 0.00 0.00 3.46
1664 2487 3.214328 GCAAAGAAACTGAGTGGAGGAA 58.786 45.455 0.00 0.00 0.00 3.36
1665 2488 2.172505 TGCAAAGAAACTGAGTGGAGGA 59.827 45.455 0.00 0.00 0.00 3.71
1666 2489 2.575532 TGCAAAGAAACTGAGTGGAGG 58.424 47.619 0.00 0.00 0.00 4.30
1667 2490 3.611057 GCATGCAAAGAAACTGAGTGGAG 60.611 47.826 14.21 0.00 0.00 3.86
1668 2491 2.294233 GCATGCAAAGAAACTGAGTGGA 59.706 45.455 14.21 0.00 0.00 4.02
1669 2492 2.034939 TGCATGCAAAGAAACTGAGTGG 59.965 45.455 20.30 0.00 0.00 4.00
1670 2493 3.358707 TGCATGCAAAGAAACTGAGTG 57.641 42.857 20.30 0.00 0.00 3.51
1671 2494 3.319972 ACATGCATGCAAAGAAACTGAGT 59.680 39.130 26.68 0.00 0.00 3.41
1672 2495 3.673338 CACATGCATGCAAAGAAACTGAG 59.327 43.478 26.68 11.18 0.00 3.35
1673 2496 3.318557 TCACATGCATGCAAAGAAACTGA 59.681 39.130 26.68 15.54 0.00 3.41
1674 2497 3.644823 TCACATGCATGCAAAGAAACTG 58.355 40.909 26.68 18.48 0.00 3.16
1675 2498 4.202182 ACTTCACATGCATGCAAAGAAACT 60.202 37.500 32.30 17.06 0.00 2.66
1676 2499 4.053295 ACTTCACATGCATGCAAAGAAAC 58.947 39.130 32.30 0.00 0.00 2.78
1677 2500 4.325028 ACTTCACATGCATGCAAAGAAA 57.675 36.364 32.30 18.22 0.00 2.52
1678 2501 5.648178 ATACTTCACATGCATGCAAAGAA 57.352 34.783 32.30 25.37 0.00 2.52
1679 2502 5.648178 AATACTTCACATGCATGCAAAGA 57.352 34.783 32.30 21.30 0.00 2.52
1680 2503 7.703197 TCATTAATACTTCACATGCATGCAAAG 59.297 33.333 26.68 27.50 0.00 2.77
1681 2504 7.545489 TCATTAATACTTCACATGCATGCAAA 58.455 30.769 26.68 18.43 0.00 3.68
1682 2505 7.098074 TCATTAATACTTCACATGCATGCAA 57.902 32.000 26.68 17.52 0.00 4.08
1683 2506 6.696441 TCATTAATACTTCACATGCATGCA 57.304 33.333 26.53 25.04 0.00 3.96
1684 2507 6.805271 GGATCATTAATACTTCACATGCATGC 59.195 38.462 26.53 11.82 0.00 4.06
1685 2508 7.040271 TGGGATCATTAATACTTCACATGCATG 60.040 37.037 25.09 25.09 0.00 4.06
1686 2509 7.005902 TGGGATCATTAATACTTCACATGCAT 58.994 34.615 0.00 0.00 0.00 3.96
1687 2510 6.363882 TGGGATCATTAATACTTCACATGCA 58.636 36.000 0.00 0.00 0.00 3.96
1688 2511 6.882610 TGGGATCATTAATACTTCACATGC 57.117 37.500 0.00 0.00 0.00 4.06
1702 2525 9.933723 CTTTTCTTCTTGTTTATTGGGATCATT 57.066 29.630 0.00 0.00 0.00 2.57
1703 2526 9.093458 ACTTTTCTTCTTGTTTATTGGGATCAT 57.907 29.630 0.00 0.00 0.00 2.45
1704 2527 8.477419 ACTTTTCTTCTTGTTTATTGGGATCA 57.523 30.769 0.00 0.00 0.00 2.92
1705 2528 9.196552 CAACTTTTCTTCTTGTTTATTGGGATC 57.803 33.333 0.00 0.00 0.00 3.36
1706 2529 8.923270 TCAACTTTTCTTCTTGTTTATTGGGAT 58.077 29.630 0.00 0.00 0.00 3.85
1707 2530 8.194769 GTCAACTTTTCTTCTTGTTTATTGGGA 58.805 33.333 0.00 0.00 0.00 4.37
1708 2531 8.197439 AGTCAACTTTTCTTCTTGTTTATTGGG 58.803 33.333 0.00 0.00 0.00 4.12
1709 2532 9.586435 AAGTCAACTTTTCTTCTTGTTTATTGG 57.414 29.630 0.00 0.00 30.82 3.16
1714 2537 9.974980 TTTACAAGTCAACTTTTCTTCTTGTTT 57.025 25.926 12.32 0.00 43.01 2.83
1715 2538 9.626045 CTTTACAAGTCAACTTTTCTTCTTGTT 57.374 29.630 12.32 0.00 43.01 2.83
1716 2539 8.793592 ACTTTACAAGTCAACTTTTCTTCTTGT 58.206 29.630 11.88 11.88 44.51 3.16
1719 2542 9.110502 CCTACTTTACAAGTCAACTTTTCTTCT 57.889 33.333 0.00 0.00 41.77 2.85
1720 2543 7.856398 GCCTACTTTACAAGTCAACTTTTCTTC 59.144 37.037 0.00 0.00 41.77 2.87
1721 2544 7.338449 TGCCTACTTTACAAGTCAACTTTTCTT 59.662 33.333 0.00 0.00 41.77 2.52
1722 2545 6.826741 TGCCTACTTTACAAGTCAACTTTTCT 59.173 34.615 0.00 0.00 41.77 2.52
1723 2546 7.023197 TGCCTACTTTACAAGTCAACTTTTC 57.977 36.000 0.00 0.00 41.77 2.29
1724 2547 7.582667 ATGCCTACTTTACAAGTCAACTTTT 57.417 32.000 0.00 0.00 41.77 2.27
1725 2548 7.582667 AATGCCTACTTTACAAGTCAACTTT 57.417 32.000 0.00 0.00 41.77 2.66
1726 2549 8.685838 TTAATGCCTACTTTACAAGTCAACTT 57.314 30.769 0.00 0.00 41.77 2.66
1727 2550 8.685838 TTTAATGCCTACTTTACAAGTCAACT 57.314 30.769 0.00 0.00 41.77 3.16
1728 2551 9.908152 AATTTAATGCCTACTTTACAAGTCAAC 57.092 29.630 0.00 0.00 41.77 3.18
1743 2566 9.598517 CATGTACCAATGTAAAATTTAATGCCT 57.401 29.630 0.00 0.00 0.00 4.75
1744 2567 9.377312 ACATGTACCAATGTAAAATTTAATGCC 57.623 29.630 0.00 0.00 39.01 4.40
1757 2580 5.353394 ACTCGGATTACATGTACCAATGT 57.647 39.130 4.68 4.44 43.21 2.71
1759 2582 6.093495 CACAAACTCGGATTACATGTACCAAT 59.907 38.462 4.68 0.00 0.00 3.16
1761 2584 4.932799 CACAAACTCGGATTACATGTACCA 59.067 41.667 4.68 0.00 0.00 3.25
1762 2585 4.331717 CCACAAACTCGGATTACATGTACC 59.668 45.833 4.68 3.68 0.00 3.34
1763 2586 4.201783 GCCACAAACTCGGATTACATGTAC 60.202 45.833 4.68 0.00 0.00 2.90
1766 2589 2.097466 GGCCACAAACTCGGATTACATG 59.903 50.000 0.00 0.00 0.00 3.21
1769 2592 2.109425 AGGCCACAAACTCGGATTAC 57.891 50.000 5.01 0.00 0.00 1.89
1771 2594 1.247567 CAAGGCCACAAACTCGGATT 58.752 50.000 5.01 0.00 0.00 3.01
1775 2598 3.331150 TGTATACAAGGCCACAAACTCG 58.669 45.455 5.01 0.00 0.00 4.18
1776 2599 5.699097 TTTGTATACAAGGCCACAAACTC 57.301 39.130 17.36 0.00 36.31 3.01
1778 2601 6.926272 TCATTTTTGTATACAAGGCCACAAAC 59.074 34.615 17.36 1.89 39.78 2.93
1785 2608 6.152831 ACTCCCTTCATTTTTGTATACAAGGC 59.847 38.462 17.36 0.00 37.15 4.35
1786 2609 7.703058 ACTCCCTTCATTTTTGTATACAAGG 57.297 36.000 17.36 13.17 37.15 3.61
1790 2613 9.628500 ATTCCTACTCCCTTCATTTTTGTATAC 57.372 33.333 0.00 0.00 0.00 1.47
1795 2645 8.345565 CGATAATTCCTACTCCCTTCATTTTTG 58.654 37.037 0.00 0.00 0.00 2.44
1797 2647 7.802117 TCGATAATTCCTACTCCCTTCATTTT 58.198 34.615 0.00 0.00 0.00 1.82
1801 2651 5.535406 GTCTCGATAATTCCTACTCCCTTCA 59.465 44.000 0.00 0.00 0.00 3.02
1803 2653 5.536916 CAGTCTCGATAATTCCTACTCCCTT 59.463 44.000 0.00 0.00 0.00 3.95
1920 2797 2.158519 TCCTGAGGTGTCACACTGTCTA 60.159 50.000 8.12 0.00 34.40 2.59
1969 2850 3.120408 CGGTTCTTCAGAATTGACTGCTG 60.120 47.826 0.00 0.00 37.75 4.41
2028 2925 9.167311 GTGGTGGAAATTTAGGCTGATATATAG 57.833 37.037 0.00 0.00 0.00 1.31
2064 2961 8.082242 CCTAATTTCTTGTTCCAAGTAAACTGG 58.918 37.037 4.08 2.30 0.00 4.00
2526 3441 4.789123 GCGCCGGTGTACCCCATT 62.789 66.667 17.91 0.00 0.00 3.16
2661 3576 2.203139 CGCAGGAACACACCCACA 60.203 61.111 0.00 0.00 0.00 4.17
2727 3645 8.006298 TGCGAAGTTAATTCCATTCCAATTAT 57.994 30.769 0.00 0.00 34.10 1.28
3029 3988 6.578023 GTGTATTAACTGCCTTGAGAGATCT 58.422 40.000 0.00 0.00 0.00 2.75
3982 6886 4.566907 GGAGGAAGGCGGGCAATATATTTA 60.567 45.833 3.78 0.00 0.00 1.40
3983 6887 3.421844 GAGGAAGGCGGGCAATATATTT 58.578 45.455 3.78 0.00 0.00 1.40
3984 6888 2.290960 GGAGGAAGGCGGGCAATATATT 60.291 50.000 3.78 0.00 0.00 1.28
3985 6889 1.282157 GGAGGAAGGCGGGCAATATAT 59.718 52.381 3.78 0.00 0.00 0.86
3986 6890 0.690762 GGAGGAAGGCGGGCAATATA 59.309 55.000 3.78 0.00 0.00 0.86
3987 6891 1.352622 TGGAGGAAGGCGGGCAATAT 61.353 55.000 3.78 0.00 0.00 1.28
3989 6893 2.228841 AATGGAGGAAGGCGGGCAAT 62.229 55.000 3.78 0.00 0.00 3.56
3990 6894 1.567208 TAATGGAGGAAGGCGGGCAA 61.567 55.000 3.78 0.00 0.00 4.52
3991 6895 1.983119 CTAATGGAGGAAGGCGGGCA 61.983 60.000 3.78 0.00 0.00 5.36
3992 6896 1.227973 CTAATGGAGGAAGGCGGGC 60.228 63.158 0.00 0.00 0.00 6.13
3993 6897 0.546598 AACTAATGGAGGAAGGCGGG 59.453 55.000 0.00 0.00 0.00 6.13
3994 6898 1.806623 CGAACTAATGGAGGAAGGCGG 60.807 57.143 0.00 0.00 0.00 6.13
3995 6899 1.571919 CGAACTAATGGAGGAAGGCG 58.428 55.000 0.00 0.00 0.00 5.52
3996 6900 1.485066 TCCGAACTAATGGAGGAAGGC 59.515 52.381 0.00 0.00 0.00 4.35
3997 6901 2.766828 AGTCCGAACTAATGGAGGAAGG 59.233 50.000 0.00 0.00 34.21 3.46
3998 6902 4.473477 AAGTCCGAACTAATGGAGGAAG 57.527 45.455 0.00 0.00 33.48 3.46
3999 6903 4.903045 AAAGTCCGAACTAATGGAGGAA 57.097 40.909 0.00 0.00 33.48 3.36
4001 6905 4.575885 TCAAAAGTCCGAACTAATGGAGG 58.424 43.478 0.00 0.00 33.48 4.30
4002 6906 6.371548 TCATTCAAAAGTCCGAACTAATGGAG 59.628 38.462 0.00 0.00 33.48 3.86
4003 6907 6.234920 TCATTCAAAAGTCCGAACTAATGGA 58.765 36.000 0.00 0.00 33.48 3.41
4005 6909 7.133891 ACTCATTCAAAAGTCCGAACTAATG 57.866 36.000 0.00 0.00 33.48 1.90
4007 6911 6.017440 CCAACTCATTCAAAAGTCCGAACTAA 60.017 38.462 0.00 0.00 33.48 2.24
4008 6912 5.468746 CCAACTCATTCAAAAGTCCGAACTA 59.531 40.000 0.00 0.00 33.48 2.24
4009 6913 4.275936 CCAACTCATTCAAAAGTCCGAACT 59.724 41.667 0.00 0.00 37.32 3.01
4011 6915 3.004315 GCCAACTCATTCAAAAGTCCGAA 59.996 43.478 0.00 0.00 0.00 4.30
4012 6916 2.552315 GCCAACTCATTCAAAAGTCCGA 59.448 45.455 0.00 0.00 0.00 4.55
4013 6917 2.554032 AGCCAACTCATTCAAAAGTCCG 59.446 45.455 0.00 0.00 0.00 4.79
4014 6918 3.305608 CCAGCCAACTCATTCAAAAGTCC 60.306 47.826 0.00 0.00 0.00 3.85
4016 6920 3.565307 TCCAGCCAACTCATTCAAAAGT 58.435 40.909 0.00 0.00 0.00 2.66
4017 6921 3.613432 GCTCCAGCCAACTCATTCAAAAG 60.613 47.826 0.00 0.00 34.31 2.27
4019 6923 1.888512 GCTCCAGCCAACTCATTCAAA 59.111 47.619 0.00 0.00 34.31 2.69
4020 6924 1.202915 TGCTCCAGCCAACTCATTCAA 60.203 47.619 0.00 0.00 41.18 2.69
4025 6929 0.401356 TTCATGCTCCAGCCAACTCA 59.599 50.000 0.00 0.00 41.18 3.41
4026 6930 1.760192 ATTCATGCTCCAGCCAACTC 58.240 50.000 0.00 0.00 41.18 3.01
4027 6931 2.226962 AATTCATGCTCCAGCCAACT 57.773 45.000 0.00 0.00 41.18 3.16
4028 6932 4.454728 TTAAATTCATGCTCCAGCCAAC 57.545 40.909 0.00 0.00 41.18 3.77
4029 6933 6.239373 CCATATTAAATTCATGCTCCAGCCAA 60.239 38.462 0.00 0.00 41.18 4.52
4030 6934 5.244402 CCATATTAAATTCATGCTCCAGCCA 59.756 40.000 0.00 0.00 41.18 4.75
4031 6935 5.244626 ACCATATTAAATTCATGCTCCAGCC 59.755 40.000 0.00 0.00 41.18 4.85
4032 6936 6.336842 ACCATATTAAATTCATGCTCCAGC 57.663 37.500 0.00 0.00 42.50 4.85
4033 6937 8.680903 GGATACCATATTAAATTCATGCTCCAG 58.319 37.037 0.00 0.00 0.00 3.86
4036 6940 8.492673 TCGGATACCATATTAAATTCATGCTC 57.507 34.615 0.00 0.00 0.00 4.26
4038 6942 7.066284 AGCTCGGATACCATATTAAATTCATGC 59.934 37.037 0.00 0.00 0.00 4.06
4039 6943 8.498054 AGCTCGGATACCATATTAAATTCATG 57.502 34.615 0.00 0.00 0.00 3.07
4041 6945 9.653287 CTTAGCTCGGATACCATATTAAATTCA 57.347 33.333 0.00 0.00 0.00 2.57
4042 6946 9.871238 TCTTAGCTCGGATACCATATTAAATTC 57.129 33.333 0.00 0.00 0.00 2.17
4043 6947 9.877178 CTCTTAGCTCGGATACCATATTAAATT 57.123 33.333 0.00 0.00 0.00 1.82
4044 6948 8.478877 CCTCTTAGCTCGGATACCATATTAAAT 58.521 37.037 0.00 0.00 0.00 1.40
4045 6949 7.453752 ACCTCTTAGCTCGGATACCATATTAAA 59.546 37.037 0.00 0.00 0.00 1.52
4046 6950 6.952358 ACCTCTTAGCTCGGATACCATATTAA 59.048 38.462 0.00 0.00 0.00 1.40
4048 6952 5.334421 ACCTCTTAGCTCGGATACCATATT 58.666 41.667 0.00 0.00 0.00 1.28
4049 6953 4.936802 ACCTCTTAGCTCGGATACCATAT 58.063 43.478 0.00 0.00 0.00 1.78
4050 6954 4.043059 AGACCTCTTAGCTCGGATACCATA 59.957 45.833 0.00 0.00 0.00 2.74
4051 6955 3.158676 GACCTCTTAGCTCGGATACCAT 58.841 50.000 0.00 0.00 0.00 3.55
4052 6956 2.175069 AGACCTCTTAGCTCGGATACCA 59.825 50.000 0.00 0.00 0.00 3.25
4053 6957 2.866351 AGACCTCTTAGCTCGGATACC 58.134 52.381 0.00 0.00 0.00 2.73
4054 6958 3.884091 TCAAGACCTCTTAGCTCGGATAC 59.116 47.826 0.00 0.00 34.28 2.24
4056 6960 2.955660 CTCAAGACCTCTTAGCTCGGAT 59.044 50.000 0.00 0.00 34.28 4.18
4057 6961 2.291024 ACTCAAGACCTCTTAGCTCGGA 60.291 50.000 0.00 0.00 34.28 4.55
4058 6962 2.096248 ACTCAAGACCTCTTAGCTCGG 58.904 52.381 0.00 0.00 34.28 4.63
4060 6964 4.792521 TGAACTCAAGACCTCTTAGCTC 57.207 45.455 0.00 0.00 34.28 4.09
4072 6976 7.615455 GCATTGGCAGGATCTTGAACTCAAG 62.615 48.000 9.36 12.40 45.91 3.02
4073 6977 3.507162 TTGGCAGGATCTTGAACTCAA 57.493 42.857 9.36 4.45 0.00 3.02
4074 6978 3.349927 CATTGGCAGGATCTTGAACTCA 58.650 45.455 9.36 0.00 0.00 3.41
4075 6979 2.098770 GCATTGGCAGGATCTTGAACTC 59.901 50.000 9.36 0.00 40.72 3.01
4076 6980 2.097825 GCATTGGCAGGATCTTGAACT 58.902 47.619 9.36 0.00 40.72 3.01
4089 6993 6.548171 TCGTTTTACTTAATACTGCATTGGC 58.452 36.000 0.00 0.00 41.68 4.52
4090 6994 9.221775 GAATCGTTTTACTTAATACTGCATTGG 57.778 33.333 0.00 0.00 0.00 3.16
4091 6995 9.988350 AGAATCGTTTTACTTAATACTGCATTG 57.012 29.630 0.00 0.00 0.00 2.82
4093 6997 8.122952 GCAGAATCGTTTTACTTAATACTGCAT 58.877 33.333 0.00 0.00 43.11 3.96
4094 6998 7.461107 GCAGAATCGTTTTACTTAATACTGCA 58.539 34.615 0.00 0.00 43.11 4.41
4095 6999 6.623743 CGCAGAATCGTTTTACTTAATACTGC 59.376 38.462 0.00 0.00 41.18 4.40
4096 7000 7.839837 GTCGCAGAATCGTTTTACTTAATACTG 59.160 37.037 0.00 0.00 39.69 2.74
4097 7001 7.009907 GGTCGCAGAATCGTTTTACTTAATACT 59.990 37.037 0.00 0.00 39.69 2.12
4099 7003 7.037438 AGGTCGCAGAATCGTTTTACTTAATA 58.963 34.615 0.00 0.00 39.69 0.98
4100 7004 5.873164 AGGTCGCAGAATCGTTTTACTTAAT 59.127 36.000 0.00 0.00 39.69 1.40
4101 7005 5.232463 AGGTCGCAGAATCGTTTTACTTAA 58.768 37.500 0.00 0.00 39.69 1.85
4102 7006 4.813027 AGGTCGCAGAATCGTTTTACTTA 58.187 39.130 0.00 0.00 39.69 2.24
4104 7008 3.314541 AGGTCGCAGAATCGTTTTACT 57.685 42.857 0.00 0.00 39.69 2.24
4105 7009 3.922240 TGTAGGTCGCAGAATCGTTTTAC 59.078 43.478 0.00 0.00 39.69 2.01
4106 7010 4.177165 TGTAGGTCGCAGAATCGTTTTA 57.823 40.909 0.00 0.00 39.69 1.52
4107 7011 3.034721 TGTAGGTCGCAGAATCGTTTT 57.965 42.857 0.00 0.00 39.69 2.43
4108 7012 2.736144 TGTAGGTCGCAGAATCGTTT 57.264 45.000 0.00 0.00 39.69 3.60
4109 7013 2.794981 CGATGTAGGTCGCAGAATCGTT 60.795 50.000 0.00 0.00 37.45 3.85
4111 7015 1.002792 TCGATGTAGGTCGCAGAATCG 60.003 52.381 0.00 0.00 41.76 3.34
4114 7018 1.337071 GGATCGATGTAGGTCGCAGAA 59.663 52.381 0.54 0.00 39.69 3.02
4116 7020 0.039074 GGGATCGATGTAGGTCGCAG 60.039 60.000 0.54 0.00 41.22 5.18
4117 7021 0.467474 AGGGATCGATGTAGGTCGCA 60.467 55.000 0.54 0.00 41.22 5.10
4119 7023 2.743126 GACTAGGGATCGATGTAGGTCG 59.257 54.545 0.54 0.00 42.74 4.79
4121 7025 3.878237 TGACTAGGGATCGATGTAGGT 57.122 47.619 0.54 0.00 0.00 3.08
4122 7026 4.594970 AGATGACTAGGGATCGATGTAGG 58.405 47.826 0.54 0.00 0.00 3.18
4123 7027 5.353956 CAGAGATGACTAGGGATCGATGTAG 59.646 48.000 0.54 3.56 0.00 2.74
4124 7028 5.249420 CAGAGATGACTAGGGATCGATGTA 58.751 45.833 0.54 0.00 0.00 2.29
4125 7029 4.078537 CAGAGATGACTAGGGATCGATGT 58.921 47.826 0.54 0.00 0.00 3.06
4127 7031 3.088532 GCAGAGATGACTAGGGATCGAT 58.911 50.000 0.00 0.00 0.00 3.59
4128 7032 2.509569 GCAGAGATGACTAGGGATCGA 58.490 52.381 0.00 0.00 0.00 3.59
4129 7033 1.543802 GGCAGAGATGACTAGGGATCG 59.456 57.143 0.00 0.00 0.00 3.69
4130 7034 2.603021 TGGCAGAGATGACTAGGGATC 58.397 52.381 0.00 0.00 0.00 3.36
4131 7035 2.783379 TGGCAGAGATGACTAGGGAT 57.217 50.000 0.00 0.00 0.00 3.85
4132 7036 2.702478 CAATGGCAGAGATGACTAGGGA 59.298 50.000 0.00 0.00 0.00 4.20
4134 7038 3.123157 CCAATGGCAGAGATGACTAGG 57.877 52.381 0.00 0.00 0.00 3.02
4148 7052 2.203394 CATCCGGGGAGCCAATGG 60.203 66.667 0.00 0.00 0.00 3.16
4150 7054 2.631012 GAAGCATCCGGGGAGCCAAT 62.631 60.000 0.00 0.00 0.00 3.16
4151 7055 3.338250 AAGCATCCGGGGAGCCAA 61.338 61.111 0.00 0.00 0.00 4.52
4152 7056 3.797353 GAAGCATCCGGGGAGCCA 61.797 66.667 0.00 0.00 0.00 4.75
4153 7057 3.468326 GAGAAGCATCCGGGGAGCC 62.468 68.421 0.00 0.00 0.00 4.70
4155 7059 0.471617 ATTGAGAAGCATCCGGGGAG 59.528 55.000 0.00 0.00 0.00 4.30
4156 7060 0.469917 GATTGAGAAGCATCCGGGGA 59.530 55.000 0.00 0.00 0.00 4.81
4199 10541 1.358759 CGAAAGGCCACAACACCAC 59.641 57.895 5.01 0.00 0.00 4.16
4233 10575 0.248866 CACGCCAAAACCCAAGTGAC 60.249 55.000 0.00 0.00 0.00 3.67
4356 10705 2.123077 AGCATCGGGGAGAGAGGG 60.123 66.667 0.00 0.00 0.00 4.30
4386 10735 5.885230 TGAAAGAGTTTAGGACGTCGATA 57.115 39.130 9.92 2.04 0.00 2.92
4398 10747 5.010012 ACTTGCAATTCGGATGAAAGAGTTT 59.990 36.000 0.00 0.00 35.77 2.66
4412 10761 0.169009 GCCCACTCGACTTGCAATTC 59.831 55.000 0.00 2.54 0.00 2.17
4598 10949 4.566759 CACCACAACACTTGATAGGTATCG 59.433 45.833 0.00 0.00 35.48 2.92
4601 10952 5.247337 TGATCACCACAACACTTGATAGGTA 59.753 40.000 0.00 0.00 34.40 3.08
4712 11063 2.719739 AGAGAAGGTCAACGTCGGATA 58.280 47.619 0.00 0.00 32.45 2.59
4738 11089 2.631160 TTCTTCTCGGGCTTGTCAAA 57.369 45.000 0.00 0.00 0.00 2.69
4758 11109 1.210478 GAAGCCTGCCAAGTGGATAGA 59.790 52.381 0.18 0.00 37.39 1.98
4843 11194 7.175990 ACGACAACTTATGGGTTCATTGTAAAT 59.824 33.333 0.00 0.00 34.96 1.40
4849 11200 4.825085 ACAACGACAACTTATGGGTTCATT 59.175 37.500 0.00 0.00 34.96 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.