Multiple sequence alignment - TraesCS3B01G255100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G255100 chr3B 100.000 2641 0 0 1 2641 411451180 411453820 0.000000e+00 4878.0
1 TraesCS3B01G255100 chr3B 80.734 218 31 8 2363 2573 825236322 825236535 2.720000e-35 159.0
2 TraesCS3B01G255100 chr3B 76.190 189 26 7 2394 2567 146297780 146297596 6.060000e-12 82.4
3 TraesCS3B01G255100 chr3B 86.765 68 8 1 2535 2601 472642441 472642508 1.010000e-09 75.0
4 TraesCS3B01G255100 chr3D 93.043 1883 78 16 1 1873 309774571 309772732 0.000000e+00 2702.0
5 TraesCS3B01G255100 chr3D 78.923 650 99 17 22 646 594641953 594641317 8.800000e-110 407.0
6 TraesCS3B01G255100 chr3D 92.086 139 8 3 1892 2028 309772609 309772472 2.680000e-45 193.0
7 TraesCS3B01G255100 chr3D 94.737 38 2 0 2435 2472 21183730 21183767 2.840000e-05 60.2
8 TraesCS3B01G255100 chr3A 91.749 1818 111 14 1 1799 423128577 423130374 0.000000e+00 2490.0
9 TraesCS3B01G255100 chr3A 94.853 136 6 1 1892 2026 423130410 423130545 7.410000e-51 211.0
10 TraesCS3B01G255100 chr3A 84.615 117 14 4 2511 2626 724062176 724062289 2.150000e-21 113.0
11 TraesCS3B01G255100 chr3A 76.923 169 25 7 2420 2575 686164476 686164643 1.680000e-12 84.2
12 TraesCS3B01G255100 chr3A 85.185 54 6 2 2574 2626 22801597 22801649 1.000000e-03 54.7
13 TraesCS3B01G255100 chr6D 82.409 631 97 13 1 625 412770948 412770326 2.990000e-149 538.0
14 TraesCS3B01G255100 chr2A 82.735 585 87 12 50 628 164769829 164769253 2.350000e-140 508.0
15 TraesCS3B01G255100 chr5D 82.922 527 81 6 59 580 443003298 443002776 1.430000e-127 466.0
16 TraesCS3B01G255100 chr2D 82.321 560 78 11 22 580 356729750 356730289 1.430000e-127 466.0
17 TraesCS3B01G255100 chr2D 80.208 96 11 7 2392 2484 525940370 525940460 6.100000e-07 65.8
18 TraesCS3B01G255100 chr6A 84.080 402 58 5 147 547 555746672 555746276 1.480000e-102 383.0
19 TraesCS3B01G255100 chr6A 78.947 513 100 6 50 562 567940256 567940760 2.520000e-90 342.0
20 TraesCS3B01G255100 chr2B 81.713 432 72 6 1 432 134772750 134773174 1.160000e-93 353.0
21 TraesCS3B01G255100 chr1B 81.429 420 64 8 234 642 421369728 421370144 5.450000e-87 331.0
22 TraesCS3B01G255100 chr1B 82.090 134 12 6 2420 2548 134465136 134465010 1.290000e-18 104.0
23 TraesCS3B01G255100 chr4B 82.464 211 24 11 2362 2566 19759946 19760149 3.490000e-39 172.0
24 TraesCS3B01G255100 chr4B 82.000 150 22 3 2423 2567 576738481 576738332 3.570000e-24 122.0
25 TraesCS3B01G255100 chr1D 80.383 209 30 9 2420 2618 453431804 453431597 5.890000e-32 148.0
26 TraesCS3B01G255100 chr7B 79.412 204 28 9 2414 2609 750383082 750383279 5.930000e-27 132.0
27 TraesCS3B01G255100 chr5B 78.974 195 24 8 2389 2568 494664680 494664872 1.660000e-22 117.0
28 TraesCS3B01G255100 chr5B 100.000 28 0 0 2576 2603 547497794 547497767 5.000000e-03 52.8
29 TraesCS3B01G255100 chr4D 85.714 98 11 3 2262 2356 488418984 488418887 1.670000e-17 100.0
30 TraesCS3B01G255100 chr7D 74.088 274 48 15 2369 2626 550836685 550836951 1.010000e-14 91.6
31 TraesCS3B01G255100 chr7D 82.812 64 11 0 2576 2639 26182804 26182741 1.020000e-04 58.4
32 TraesCS3B01G255100 chr4A 88.889 72 7 1 2426 2496 685735839 685735768 1.300000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G255100 chr3B 411451180 411453820 2640 False 4878.0 4878 100.0000 1 2641 1 chr3B.!!$F1 2640
1 TraesCS3B01G255100 chr3D 309772472 309774571 2099 True 1447.5 2702 92.5645 1 2028 2 chr3D.!!$R2 2027
2 TraesCS3B01G255100 chr3D 594641317 594641953 636 True 407.0 407 78.9230 22 646 1 chr3D.!!$R1 624
3 TraesCS3B01G255100 chr3A 423128577 423130545 1968 False 1350.5 2490 93.3010 1 2026 2 chr3A.!!$F4 2025
4 TraesCS3B01G255100 chr6D 412770326 412770948 622 True 538.0 538 82.4090 1 625 1 chr6D.!!$R1 624
5 TraesCS3B01G255100 chr2A 164769253 164769829 576 True 508.0 508 82.7350 50 628 1 chr2A.!!$R1 578
6 TraesCS3B01G255100 chr5D 443002776 443003298 522 True 466.0 466 82.9220 59 580 1 chr5D.!!$R1 521
7 TraesCS3B01G255100 chr2D 356729750 356730289 539 False 466.0 466 82.3210 22 580 1 chr2D.!!$F1 558
8 TraesCS3B01G255100 chr6A 567940256 567940760 504 False 342.0 342 78.9470 50 562 1 chr6A.!!$F1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.030504 TACGACCGCGAAAACAGACA 59.969 50.0 8.23 0.0 41.64 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1811 1893 0.036388 GGATGAACTCGGGTGCAGAA 60.036 55.0 0.74 0.0 33.98 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.712063 GCTTACGACCGCGAAAAC 57.288 55.556 8.23 0.00 41.64 2.43
25 26 0.030504 TACGACCGCGAAAACAGACA 59.969 50.000 8.23 0.00 41.64 3.41
32 33 1.205657 GCGAAAACAGACAGACGTGA 58.794 50.000 0.00 0.00 0.00 4.35
45 46 3.432588 CGTGAGACGACTCCGCCT 61.433 66.667 12.30 0.00 46.05 5.52
46 47 2.486042 GTGAGACGACTCCGCCTC 59.514 66.667 12.30 0.00 44.07 4.70
48 49 2.795297 GAGACGACTCCGCCTCAG 59.205 66.667 3.33 0.00 43.42 3.35
73 74 1.748122 CAAGGCGCTCCAGATTGCT 60.748 57.895 7.64 0.00 33.74 3.91
196 212 4.773117 GGCACCTCCGACGACGAC 62.773 72.222 9.28 0.00 42.66 4.34
198 214 3.417224 CACCTCCGACGACGACGA 61.417 66.667 20.63 6.51 42.66 4.20
199 215 3.418068 ACCTCCGACGACGACGAC 61.418 66.667 20.63 7.02 42.66 4.34
216 241 4.052229 CGACGACCACGGCTCCTT 62.052 66.667 0.00 0.00 46.46 3.36
226 251 2.893398 GGCTCCTTGTCCGACGAT 59.107 61.111 0.00 0.00 0.00 3.73
243 268 1.615883 CGATTCGGATGATCCTCCACT 59.384 52.381 16.25 1.03 34.78 4.00
274 299 1.734137 CTACAGCTACGCCGGTGAT 59.266 57.895 24.59 8.72 36.33 3.06
288 313 1.821216 GGTGATCGAAAGGGCAAAGA 58.179 50.000 0.00 0.00 0.00 2.52
313 338 2.173569 AGCAAGGAAGTGGTGAAACTCT 59.826 45.455 0.00 0.00 36.74 3.24
405 439 6.713762 ATGTGAACTTTGGTGATCTTTTGA 57.286 33.333 0.00 0.00 0.00 2.69
582 618 2.061509 AAAGTGCCCGGTTAGTGTTT 57.938 45.000 0.00 0.00 0.00 2.83
615 656 2.590575 CCGTGTGCGTTTGAGGGT 60.591 61.111 0.00 0.00 36.15 4.34
629 679 2.361104 GGGTCCGGATTTGCAGCA 60.361 61.111 7.81 0.00 0.00 4.41
654 704 5.006165 GCTGTAGATGCTGTAACAATCAGAC 59.994 44.000 0.00 0.00 35.20 3.51
919 974 0.687757 CTCATTCCCCTCTCCGTCCA 60.688 60.000 0.00 0.00 0.00 4.02
1345 1419 3.817084 TCATCGATCAATCATCTTTGGGC 59.183 43.478 0.00 0.00 0.00 5.36
1346 1420 3.280197 TCGATCAATCATCTTTGGGCA 57.720 42.857 0.00 0.00 0.00 5.36
1347 1421 3.824133 TCGATCAATCATCTTTGGGCAT 58.176 40.909 0.00 0.00 0.00 4.40
1348 1422 4.971939 TCGATCAATCATCTTTGGGCATA 58.028 39.130 0.00 0.00 0.00 3.14
1349 1423 5.563592 TCGATCAATCATCTTTGGGCATAT 58.436 37.500 0.00 0.00 0.00 1.78
1350 1424 5.413523 TCGATCAATCATCTTTGGGCATATG 59.586 40.000 0.00 0.00 0.00 1.78
1351 1425 4.859304 TCAATCATCTTTGGGCATATGC 57.141 40.909 19.79 19.79 41.14 3.14
1352 1426 4.216708 TCAATCATCTTTGGGCATATGCA 58.783 39.130 28.07 6.84 44.36 3.96
1387 1469 2.159627 GTCATGGTTTCTCGCGTGATTT 59.840 45.455 12.14 0.00 0.00 2.17
1709 1791 7.363793 CCTCTGGGTGAAAAAGGGTATTATTTG 60.364 40.741 0.00 0.00 0.00 2.32
1787 1869 4.212425 TCGCGTTCTTTTCTGCATTTTCTA 59.788 37.500 5.77 0.00 0.00 2.10
1792 1874 7.253950 GCGTTCTTTTCTGCATTTTCTAAACAA 60.254 33.333 0.00 0.00 0.00 2.83
1819 1901 5.004726 GCATACGAAAATTCATTTCTGCACC 59.995 40.000 0.00 0.00 44.35 5.01
1821 1903 2.916716 CGAAAATTCATTTCTGCACCCG 59.083 45.455 0.00 0.00 44.35 5.28
1824 1906 2.496899 ATTCATTTCTGCACCCGAGT 57.503 45.000 0.00 0.00 0.00 4.18
1830 1912 0.036388 TTCTGCACCCGAGTTCATCC 60.036 55.000 0.00 0.00 0.00 3.51
1834 1916 2.100631 CACCCGAGTTCATCCGCAC 61.101 63.158 0.00 0.00 0.00 5.34
1835 1917 2.511600 CCCGAGTTCATCCGCACC 60.512 66.667 0.00 0.00 0.00 5.01
1836 1918 2.579201 CCGAGTTCATCCGCACCT 59.421 61.111 0.00 0.00 0.00 4.00
1837 1919 1.811266 CCGAGTTCATCCGCACCTG 60.811 63.158 0.00 0.00 0.00 4.00
1926 2112 3.181483 CCAGCCATCTAGTTGCAAAATCC 60.181 47.826 0.00 0.00 0.00 3.01
1927 2113 3.026694 AGCCATCTAGTTGCAAAATCCC 58.973 45.455 0.00 0.00 0.00 3.85
2007 2195 2.807895 GCGTGCGCTCGTTCCTAA 60.808 61.111 29.51 0.00 38.26 2.69
2028 2216 1.550869 CCTTTCACTTGGGATGGGCTT 60.551 52.381 0.00 0.00 0.00 4.35
2029 2217 2.250924 CTTTCACTTGGGATGGGCTTT 58.749 47.619 0.00 0.00 0.00 3.51
2030 2218 1.631405 TTCACTTGGGATGGGCTTTG 58.369 50.000 0.00 0.00 0.00 2.77
2031 2219 0.482446 TCACTTGGGATGGGCTTTGT 59.518 50.000 0.00 0.00 0.00 2.83
2032 2220 0.890683 CACTTGGGATGGGCTTTGTC 59.109 55.000 0.00 0.00 0.00 3.18
2033 2221 0.779997 ACTTGGGATGGGCTTTGTCT 59.220 50.000 0.00 0.00 0.00 3.41
2034 2222 1.272147 ACTTGGGATGGGCTTTGTCTC 60.272 52.381 0.00 0.00 0.00 3.36
2035 2223 0.776810 TTGGGATGGGCTTTGTCTCA 59.223 50.000 0.00 0.00 0.00 3.27
2036 2224 0.776810 TGGGATGGGCTTTGTCTCAA 59.223 50.000 0.00 0.00 0.00 3.02
2037 2225 1.146774 TGGGATGGGCTTTGTCTCAAA 59.853 47.619 0.00 0.00 0.00 2.69
2038 2226 2.247358 GGGATGGGCTTTGTCTCAAAA 58.753 47.619 0.00 0.00 0.00 2.44
2039 2227 2.632512 GGGATGGGCTTTGTCTCAAAAA 59.367 45.455 0.00 0.00 0.00 1.94
2058 2246 3.701205 AAACAAAATCTTGGGATGGGC 57.299 42.857 0.00 0.00 36.82 5.36
2059 2247 2.629017 ACAAAATCTTGGGATGGGCT 57.371 45.000 0.00 0.00 36.82 5.19
2060 2248 2.181975 ACAAAATCTTGGGATGGGCTG 58.818 47.619 0.00 0.00 36.82 4.85
2061 2249 2.225343 ACAAAATCTTGGGATGGGCTGA 60.225 45.455 0.00 0.00 36.82 4.26
2062 2250 2.429610 CAAAATCTTGGGATGGGCTGAG 59.570 50.000 0.00 0.00 31.75 3.35
2063 2251 1.600058 AATCTTGGGATGGGCTGAGA 58.400 50.000 0.00 0.00 31.75 3.27
2064 2252 1.138568 ATCTTGGGATGGGCTGAGAG 58.861 55.000 0.00 0.00 0.00 3.20
2065 2253 1.153005 CTTGGGATGGGCTGAGAGC 60.153 63.158 0.00 0.00 41.46 4.09
2066 2254 2.937379 CTTGGGATGGGCTGAGAGCG 62.937 65.000 0.00 0.00 43.62 5.03
2067 2255 3.474570 GGGATGGGCTGAGAGCGT 61.475 66.667 0.00 0.00 43.62 5.07
2068 2256 2.202987 GGATGGGCTGAGAGCGTG 60.203 66.667 0.00 0.00 43.62 5.34
2069 2257 2.581354 GATGGGCTGAGAGCGTGT 59.419 61.111 0.00 0.00 43.62 4.49
2070 2258 1.520342 GATGGGCTGAGAGCGTGTC 60.520 63.158 0.00 0.00 43.62 3.67
2071 2259 2.230994 GATGGGCTGAGAGCGTGTCA 62.231 60.000 0.00 0.00 43.62 3.58
2072 2260 1.620739 ATGGGCTGAGAGCGTGTCAT 61.621 55.000 0.00 0.00 43.62 3.06
2073 2261 1.078848 GGGCTGAGAGCGTGTCATT 60.079 57.895 0.00 0.00 43.62 2.57
2074 2262 0.674895 GGGCTGAGAGCGTGTCATTT 60.675 55.000 0.00 0.00 43.62 2.32
2075 2263 0.445436 GGCTGAGAGCGTGTCATTTG 59.555 55.000 0.00 0.00 43.62 2.32
2076 2264 1.432514 GCTGAGAGCGTGTCATTTGA 58.567 50.000 0.00 0.00 0.00 2.69
2077 2265 1.127582 GCTGAGAGCGTGTCATTTGAC 59.872 52.381 3.72 3.72 44.97 3.18
2093 2281 2.335369 ACGCTCAGTCACCGTCAC 59.665 61.111 0.00 0.00 0.00 3.67
2094 2282 2.801162 CGCTCAGTCACCGTCACG 60.801 66.667 0.00 0.00 0.00 4.35
2095 2283 2.335369 GCTCAGTCACCGTCACGT 59.665 61.111 0.00 0.00 0.00 4.49
2096 2284 2.016704 GCTCAGTCACCGTCACGTG 61.017 63.158 9.94 9.94 34.93 4.49
2097 2285 1.359117 CTCAGTCACCGTCACGTGT 59.641 57.895 16.51 0.00 35.18 4.49
2098 2286 0.660595 CTCAGTCACCGTCACGTGTC 60.661 60.000 16.51 9.31 35.18 3.67
2099 2287 2.009226 CAGTCACCGTCACGTGTCG 61.009 63.158 24.93 24.93 35.18 4.35
2100 2288 3.392440 GTCACCGTCACGTGTCGC 61.392 66.667 26.15 11.40 35.18 5.19
2101 2289 3.890221 TCACCGTCACGTGTCGCA 61.890 61.111 26.15 11.61 35.18 5.10
2102 2290 3.688330 CACCGTCACGTGTCGCAC 61.688 66.667 26.15 11.83 0.00 5.34
2103 2291 3.896133 ACCGTCACGTGTCGCACT 61.896 61.111 26.15 10.30 31.34 4.40
2104 2292 3.394874 CCGTCACGTGTCGCACTG 61.395 66.667 26.15 11.40 31.34 3.66
2105 2293 2.654085 CGTCACGTGTCGCACTGT 60.654 61.111 21.18 5.45 31.34 3.55
2106 2294 2.228241 CGTCACGTGTCGCACTGTT 61.228 57.895 21.18 0.00 31.34 3.16
2107 2295 1.272715 GTCACGTGTCGCACTGTTG 59.727 57.895 16.51 3.70 31.34 3.33
2108 2296 1.880796 TCACGTGTCGCACTGTTGG 60.881 57.895 16.51 0.00 31.34 3.77
2109 2297 3.269347 ACGTGTCGCACTGTTGGC 61.269 61.111 8.07 0.00 31.34 4.52
2116 2304 2.980233 GCACTGTTGGCGCTTCCT 60.980 61.111 7.64 0.00 35.26 3.36
2117 2305 2.555547 GCACTGTTGGCGCTTCCTT 61.556 57.895 7.64 0.00 35.26 3.36
2118 2306 2.032981 CACTGTTGGCGCTTCCTTT 58.967 52.632 7.64 0.00 35.26 3.11
2119 2307 0.318107 CACTGTTGGCGCTTCCTTTG 60.318 55.000 7.64 0.00 35.26 2.77
2120 2308 0.465460 ACTGTTGGCGCTTCCTTTGA 60.465 50.000 7.64 0.00 35.26 2.69
2121 2309 0.667993 CTGTTGGCGCTTCCTTTGAA 59.332 50.000 7.64 0.00 35.26 2.69
2122 2310 1.270550 CTGTTGGCGCTTCCTTTGAAT 59.729 47.619 7.64 0.00 35.26 2.57
2123 2311 1.686052 TGTTGGCGCTTCCTTTGAATT 59.314 42.857 7.64 0.00 35.26 2.17
2124 2312 2.102252 TGTTGGCGCTTCCTTTGAATTT 59.898 40.909 7.64 0.00 35.26 1.82
2125 2313 3.130633 GTTGGCGCTTCCTTTGAATTTT 58.869 40.909 7.64 0.00 35.26 1.82
2126 2314 3.467374 TGGCGCTTCCTTTGAATTTTT 57.533 38.095 7.64 0.00 35.26 1.94
2155 2343 4.619437 TTTTTCGTACGAGTTTTTGGCT 57.381 36.364 18.64 0.00 0.00 4.75
2156 2344 4.619437 TTTTCGTACGAGTTTTTGGCTT 57.381 36.364 18.64 0.00 0.00 4.35
2157 2345 4.619437 TTTCGTACGAGTTTTTGGCTTT 57.381 36.364 18.64 0.00 0.00 3.51
2158 2346 4.619437 TTCGTACGAGTTTTTGGCTTTT 57.381 36.364 18.64 0.00 0.00 2.27
2159 2347 4.619437 TCGTACGAGTTTTTGGCTTTTT 57.381 36.364 15.28 0.00 0.00 1.94
2160 2348 5.731599 TCGTACGAGTTTTTGGCTTTTTA 57.268 34.783 15.28 0.00 0.00 1.52
2161 2349 6.116680 TCGTACGAGTTTTTGGCTTTTTAA 57.883 33.333 15.28 0.00 0.00 1.52
2162 2350 6.549952 TCGTACGAGTTTTTGGCTTTTTAAA 58.450 32.000 15.28 0.00 0.00 1.52
2163 2351 7.194962 TCGTACGAGTTTTTGGCTTTTTAAAT 58.805 30.769 15.28 0.00 0.00 1.40
2164 2352 7.166142 TCGTACGAGTTTTTGGCTTTTTAAATG 59.834 33.333 15.28 0.00 0.00 2.32
2165 2353 6.597262 ACGAGTTTTTGGCTTTTTAAATGG 57.403 33.333 0.00 0.00 0.00 3.16
2166 2354 5.525745 ACGAGTTTTTGGCTTTTTAAATGGG 59.474 36.000 0.00 0.00 0.00 4.00
2167 2355 5.525745 CGAGTTTTTGGCTTTTTAAATGGGT 59.474 36.000 0.00 0.00 0.00 4.51
2168 2356 6.037720 CGAGTTTTTGGCTTTTTAAATGGGTT 59.962 34.615 0.00 0.00 0.00 4.11
2169 2357 7.414651 CGAGTTTTTGGCTTTTTAAATGGGTTT 60.415 33.333 0.00 0.00 0.00 3.27
2170 2358 8.128322 AGTTTTTGGCTTTTTAAATGGGTTTT 57.872 26.923 0.00 0.00 0.00 2.43
2171 2359 8.589338 AGTTTTTGGCTTTTTAAATGGGTTTTT 58.411 25.926 0.00 0.00 0.00 1.94
2172 2360 8.865001 GTTTTTGGCTTTTTAAATGGGTTTTTC 58.135 29.630 0.00 0.00 0.00 2.29
2173 2361 5.993106 TGGCTTTTTAAATGGGTTTTTCG 57.007 34.783 0.00 0.00 0.00 3.46
2174 2362 5.671493 TGGCTTTTTAAATGGGTTTTTCGA 58.329 33.333 0.00 0.00 0.00 3.71
2175 2363 6.292150 TGGCTTTTTAAATGGGTTTTTCGAT 58.708 32.000 0.00 0.00 0.00 3.59
2176 2364 6.768381 TGGCTTTTTAAATGGGTTTTTCGATT 59.232 30.769 0.00 0.00 0.00 3.34
2177 2365 7.283354 TGGCTTTTTAAATGGGTTTTTCGATTT 59.717 29.630 0.00 0.00 0.00 2.17
2178 2366 8.132362 GGCTTTTTAAATGGGTTTTTCGATTTT 58.868 29.630 0.00 0.00 0.00 1.82
2179 2367 9.509855 GCTTTTTAAATGGGTTTTTCGATTTTT 57.490 25.926 0.00 0.00 0.00 1.94
2183 2371 6.859420 AAATGGGTTTTTCGATTTTTCTGG 57.141 33.333 0.00 0.00 0.00 3.86
2184 2372 3.723260 TGGGTTTTTCGATTTTTCTGGC 58.277 40.909 0.00 0.00 0.00 4.85
2185 2373 3.386402 TGGGTTTTTCGATTTTTCTGGCT 59.614 39.130 0.00 0.00 0.00 4.75
2186 2374 4.141824 TGGGTTTTTCGATTTTTCTGGCTT 60.142 37.500 0.00 0.00 0.00 4.35
2187 2375 4.814234 GGGTTTTTCGATTTTTCTGGCTTT 59.186 37.500 0.00 0.00 0.00 3.51
2188 2376 5.295787 GGGTTTTTCGATTTTTCTGGCTTTT 59.704 36.000 0.00 0.00 0.00 2.27
2189 2377 6.418956 GGTTTTTCGATTTTTCTGGCTTTTC 58.581 36.000 0.00 0.00 0.00 2.29
2190 2378 5.881637 TTTTCGATTTTTCTGGCTTTTCG 57.118 34.783 0.00 0.00 0.00 3.46
2191 2379 3.552604 TCGATTTTTCTGGCTTTTCGG 57.447 42.857 0.00 0.00 0.00 4.30
2192 2380 2.882137 TCGATTTTTCTGGCTTTTCGGT 59.118 40.909 0.00 0.00 0.00 4.69
2193 2381 3.316868 TCGATTTTTCTGGCTTTTCGGTT 59.683 39.130 0.00 0.00 0.00 4.44
2194 2382 4.048504 CGATTTTTCTGGCTTTTCGGTTT 58.951 39.130 0.00 0.00 0.00 3.27
2195 2383 4.506288 CGATTTTTCTGGCTTTTCGGTTTT 59.494 37.500 0.00 0.00 0.00 2.43
2196 2384 5.006261 CGATTTTTCTGGCTTTTCGGTTTTT 59.994 36.000 0.00 0.00 0.00 1.94
2197 2385 5.538067 TTTTTCTGGCTTTTCGGTTTTTG 57.462 34.783 0.00 0.00 0.00 2.44
2198 2386 4.457834 TTTCTGGCTTTTCGGTTTTTGA 57.542 36.364 0.00 0.00 0.00 2.69
2199 2387 3.430333 TCTGGCTTTTCGGTTTTTGAC 57.570 42.857 0.00 0.00 0.00 3.18
2200 2388 2.100087 TCTGGCTTTTCGGTTTTTGACC 59.900 45.455 0.00 0.00 45.55 4.02
2213 2401 5.396484 GGTTTTTGACCGGTCTATTTTAGC 58.604 41.667 33.39 18.88 39.00 3.09
2214 2402 5.182570 GGTTTTTGACCGGTCTATTTTAGCT 59.817 40.000 33.39 0.00 39.00 3.32
2215 2403 6.294342 GGTTTTTGACCGGTCTATTTTAGCTT 60.294 38.462 33.39 0.00 39.00 3.74
2216 2404 6.887626 TTTTGACCGGTCTATTTTAGCTTT 57.112 33.333 33.39 0.00 0.00 3.51
2217 2405 6.887626 TTTGACCGGTCTATTTTAGCTTTT 57.112 33.333 33.39 0.00 0.00 2.27
2218 2406 5.873179 TGACCGGTCTATTTTAGCTTTTG 57.127 39.130 33.39 0.00 0.00 2.44
2219 2407 4.698304 TGACCGGTCTATTTTAGCTTTTGG 59.302 41.667 33.39 0.00 0.00 3.28
2220 2408 4.913784 ACCGGTCTATTTTAGCTTTTGGA 58.086 39.130 0.00 0.00 0.00 3.53
2221 2409 4.698780 ACCGGTCTATTTTAGCTTTTGGAC 59.301 41.667 0.00 0.00 0.00 4.02
2222 2410 4.095932 CCGGTCTATTTTAGCTTTTGGACC 59.904 45.833 0.00 2.40 38.71 4.46
2223 2411 4.698304 CGGTCTATTTTAGCTTTTGGACCA 59.302 41.667 17.13 0.00 41.16 4.02
2224 2412 5.182380 CGGTCTATTTTAGCTTTTGGACCAA 59.818 40.000 1.69 1.69 41.16 3.67
2225 2413 6.127730 CGGTCTATTTTAGCTTTTGGACCAAT 60.128 38.462 7.99 0.00 41.16 3.16
2226 2414 7.576856 CGGTCTATTTTAGCTTTTGGACCAATT 60.577 37.037 7.99 0.00 41.16 2.32
2227 2415 8.094548 GGTCTATTTTAGCTTTTGGACCAATTT 58.905 33.333 7.99 0.00 40.89 1.82
2228 2416 9.489084 GTCTATTTTAGCTTTTGGACCAATTTT 57.511 29.630 7.99 0.00 0.00 1.82
2276 2464 5.520376 AAACATGTTTTTCTGTGAGAGGG 57.480 39.130 18.13 0.00 0.00 4.30
2277 2465 4.437682 ACATGTTTTTCTGTGAGAGGGA 57.562 40.909 0.00 0.00 0.00 4.20
2278 2466 4.990526 ACATGTTTTTCTGTGAGAGGGAT 58.009 39.130 0.00 0.00 0.00 3.85
2279 2467 4.763793 ACATGTTTTTCTGTGAGAGGGATG 59.236 41.667 0.00 0.00 0.00 3.51
2280 2468 3.754965 TGTTTTTCTGTGAGAGGGATGG 58.245 45.455 0.00 0.00 0.00 3.51
2281 2469 3.138283 TGTTTTTCTGTGAGAGGGATGGT 59.862 43.478 0.00 0.00 0.00 3.55
2282 2470 4.145052 GTTTTTCTGTGAGAGGGATGGTT 58.855 43.478 0.00 0.00 0.00 3.67
2283 2471 4.453480 TTTTCTGTGAGAGGGATGGTTT 57.547 40.909 0.00 0.00 0.00 3.27
2284 2472 4.453480 TTTCTGTGAGAGGGATGGTTTT 57.547 40.909 0.00 0.00 0.00 2.43
2285 2473 3.423539 TCTGTGAGAGGGATGGTTTTG 57.576 47.619 0.00 0.00 0.00 2.44
2286 2474 1.815003 CTGTGAGAGGGATGGTTTTGC 59.185 52.381 0.00 0.00 0.00 3.68
2287 2475 1.425066 TGTGAGAGGGATGGTTTTGCT 59.575 47.619 0.00 0.00 0.00 3.91
2288 2476 2.158475 TGTGAGAGGGATGGTTTTGCTT 60.158 45.455 0.00 0.00 0.00 3.91
2289 2477 2.489722 GTGAGAGGGATGGTTTTGCTTC 59.510 50.000 0.00 0.00 0.00 3.86
2290 2478 2.095461 GAGAGGGATGGTTTTGCTTCC 58.905 52.381 0.00 0.00 0.00 3.46
2291 2479 0.811281 GAGGGATGGTTTTGCTTCCG 59.189 55.000 0.00 0.00 0.00 4.30
2292 2480 0.112412 AGGGATGGTTTTGCTTCCGT 59.888 50.000 0.00 0.00 0.00 4.69
2293 2481 0.243636 GGGATGGTTTTGCTTCCGTG 59.756 55.000 0.00 0.00 0.00 4.94
2294 2482 1.243902 GGATGGTTTTGCTTCCGTGA 58.756 50.000 0.00 0.00 0.00 4.35
2295 2483 1.200020 GGATGGTTTTGCTTCCGTGAG 59.800 52.381 0.00 0.00 0.00 3.51
2296 2484 2.151202 GATGGTTTTGCTTCCGTGAGA 58.849 47.619 0.00 0.00 0.00 3.27
2297 2485 2.045561 TGGTTTTGCTTCCGTGAGAA 57.954 45.000 0.00 0.00 0.00 2.87
2308 2496 3.181367 GTGAGAAGCACGGCCATG 58.819 61.111 2.24 0.00 37.83 3.66
2309 2497 2.747460 TGAGAAGCACGGCCATGC 60.747 61.111 17.91 17.91 46.50 4.06
2319 2507 3.015383 GGCCATGCCCCTAGGAAA 58.985 61.111 11.48 0.00 44.06 3.13
2320 2508 1.543690 GGCCATGCCCCTAGGAAAT 59.456 57.895 11.48 0.00 44.06 2.17
2321 2509 0.829182 GGCCATGCCCCTAGGAAATG 60.829 60.000 11.48 10.51 44.06 2.32
2322 2510 0.185901 GCCATGCCCCTAGGAAATGA 59.814 55.000 11.48 0.00 32.88 2.57
2323 2511 1.411501 GCCATGCCCCTAGGAAATGAA 60.412 52.381 11.48 0.00 32.88 2.57
2324 2512 2.954539 GCCATGCCCCTAGGAAATGAAA 60.955 50.000 11.48 0.00 32.88 2.69
2325 2513 3.373830 CCATGCCCCTAGGAAATGAAAA 58.626 45.455 11.48 0.00 32.88 2.29
2326 2514 3.774216 CCATGCCCCTAGGAAATGAAAAA 59.226 43.478 11.48 0.00 32.88 1.94
2348 2536 2.619013 AGCATTTTTCTTCTTCCGCG 57.381 45.000 0.00 0.00 0.00 6.46
2349 2537 2.151202 AGCATTTTTCTTCTTCCGCGA 58.849 42.857 8.23 0.00 0.00 5.87
2350 2538 2.160417 AGCATTTTTCTTCTTCCGCGAG 59.840 45.455 8.23 0.00 0.00 5.03
2351 2539 2.159627 GCATTTTTCTTCTTCCGCGAGA 59.840 45.455 8.23 0.00 0.00 4.04
2352 2540 3.726190 GCATTTTTCTTCTTCCGCGAGAG 60.726 47.826 8.23 4.80 0.00 3.20
2353 2541 2.080286 TTTTCTTCTTCCGCGAGAGG 57.920 50.000 8.23 3.77 0.00 3.69
2354 2542 0.389948 TTTCTTCTTCCGCGAGAGGC 60.390 55.000 8.23 0.00 38.69 4.70
2355 2543 1.532604 TTCTTCTTCCGCGAGAGGCA 61.533 55.000 8.23 0.00 43.84 4.75
2356 2544 1.807573 CTTCTTCCGCGAGAGGCAC 60.808 63.158 8.23 0.00 43.84 5.01
2358 2546 2.492449 TTCTTCCGCGAGAGGCACTG 62.492 60.000 8.23 0.00 41.55 3.66
2359 2547 4.742201 TTCCGCGAGAGGCACTGC 62.742 66.667 8.23 0.00 41.55 4.40
2369 2557 3.758172 GGCACTGCCGAAAAGGAA 58.242 55.556 3.73 0.00 45.00 3.36
2370 2558 2.037871 GGCACTGCCGAAAAGGAAA 58.962 52.632 3.73 0.00 45.00 3.13
2371 2559 0.387565 GGCACTGCCGAAAAGGAAAA 59.612 50.000 3.73 0.00 45.00 2.29
2372 2560 1.202475 GGCACTGCCGAAAAGGAAAAA 60.202 47.619 3.73 0.00 45.00 1.94
2403 2591 8.743099 AGTTTTCTCTTTTTATTTTCTTTCGCG 58.257 29.630 0.00 0.00 0.00 5.87
2404 2592 8.739461 GTTTTCTCTTTTTATTTTCTTTCGCGA 58.261 29.630 3.71 3.71 0.00 5.87
2405 2593 8.488979 TTTCTCTTTTTATTTTCTTTCGCGAG 57.511 30.769 9.59 0.00 0.00 5.03
2406 2594 7.416154 TCTCTTTTTATTTTCTTTCGCGAGA 57.584 32.000 9.59 3.35 39.20 4.04
2407 2595 7.510630 TCTCTTTTTATTTTCTTTCGCGAGAG 58.489 34.615 19.89 19.89 43.69 3.20
2408 2596 7.384115 TCTCTTTTTATTTTCTTTCGCGAGAGA 59.616 33.333 23.95 23.95 43.69 3.10
2409 2597 7.288672 TCTTTTTATTTTCTTTCGCGAGAGAC 58.711 34.615 27.02 0.00 43.69 3.36
2410 2598 6.533819 TTTTATTTTCTTTCGCGAGAGACA 57.466 33.333 27.02 19.11 43.69 3.41
2411 2599 5.511088 TTATTTTCTTTCGCGAGAGACAC 57.489 39.130 27.02 0.00 43.69 3.67
2412 2600 1.405461 TTTCTTTCGCGAGAGACACG 58.595 50.000 27.02 2.63 43.69 4.49
2413 2601 0.309922 TTCTTTCGCGAGAGACACGT 59.690 50.000 27.02 0.00 43.69 4.49
2414 2602 0.309922 TCTTTCGCGAGAGACACGTT 59.690 50.000 23.95 0.00 43.69 3.99
2415 2603 1.129326 CTTTCGCGAGAGACACGTTT 58.871 50.000 21.21 0.00 43.69 3.60
2416 2604 2.031769 TCTTTCGCGAGAGACACGTTTA 60.032 45.455 23.95 0.82 43.69 2.01
2417 2605 2.624316 TTCGCGAGAGACACGTTTAT 57.376 45.000 9.59 0.00 43.69 1.40
2418 2606 1.891178 TCGCGAGAGACACGTTTATG 58.109 50.000 3.71 0.00 34.84 1.90
2419 2607 0.294887 CGCGAGAGACACGTTTATGC 59.705 55.000 0.00 0.00 0.00 3.14
2420 2608 1.630148 GCGAGAGACACGTTTATGCT 58.370 50.000 0.00 0.00 0.00 3.79
2421 2609 1.993370 GCGAGAGACACGTTTATGCTT 59.007 47.619 0.00 0.00 0.00 3.91
2422 2610 2.028165 GCGAGAGACACGTTTATGCTTC 59.972 50.000 0.00 0.00 0.00 3.86
2423 2611 2.599082 CGAGAGACACGTTTATGCTTCC 59.401 50.000 0.00 0.00 0.00 3.46
2424 2612 2.599082 GAGAGACACGTTTATGCTTCCG 59.401 50.000 0.00 0.00 0.00 4.30
2425 2613 1.060698 GAGACACGTTTATGCTTCCGC 59.939 52.381 0.00 0.00 0.00 5.54
2426 2614 0.247145 GACACGTTTATGCTTCCGCG 60.247 55.000 0.00 0.00 39.65 6.46
2427 2615 0.668096 ACACGTTTATGCTTCCGCGA 60.668 50.000 8.23 0.00 39.65 5.87
2428 2616 0.025001 CACGTTTATGCTTCCGCGAG 59.975 55.000 8.23 0.00 39.65 5.03
2429 2617 0.108992 ACGTTTATGCTTCCGCGAGA 60.109 50.000 8.23 0.00 39.65 4.04
2430 2618 0.572590 CGTTTATGCTTCCGCGAGAG 59.427 55.000 8.23 5.93 39.65 3.20
2431 2619 0.931005 GTTTATGCTTCCGCGAGAGG 59.069 55.000 8.23 4.88 39.65 3.69
2435 2623 3.267860 GCTTCCGCGAGAGGCATG 61.268 66.667 20.89 0.00 46.54 4.06
2436 2624 2.587194 CTTCCGCGAGAGGCATGG 60.587 66.667 8.23 0.00 43.84 3.66
2437 2625 3.376935 CTTCCGCGAGAGGCATGGT 62.377 63.158 8.23 0.00 43.84 3.55
2438 2626 2.859273 CTTCCGCGAGAGGCATGGTT 62.859 60.000 8.23 0.00 43.84 3.67
2439 2627 2.436646 CCGCGAGAGGCATGGTTT 60.437 61.111 8.23 0.00 43.84 3.27
2440 2628 2.753966 CCGCGAGAGGCATGGTTTG 61.754 63.158 8.23 0.00 43.84 2.93
2441 2629 2.753966 CGCGAGAGGCATGGTTTGG 61.754 63.158 0.00 0.00 43.84 3.28
2448 2636 2.125952 GCATGGTTTGGCTTCCGC 60.126 61.111 0.00 0.00 0.00 5.54
2449 2637 2.179018 CATGGTTTGGCTTCCGCG 59.821 61.111 0.00 0.00 36.88 6.46
2450 2638 2.033448 ATGGTTTGGCTTCCGCGA 59.967 55.556 8.23 0.00 36.88 5.87
2451 2639 2.040544 ATGGTTTGGCTTCCGCGAG 61.041 57.895 8.23 0.00 36.88 5.03
2452 2640 2.358247 GGTTTGGCTTCCGCGAGA 60.358 61.111 8.23 0.00 36.88 4.04
2453 2641 2.391389 GGTTTGGCTTCCGCGAGAG 61.391 63.158 8.23 5.93 36.88 3.20
2454 2642 2.047274 TTTGGCTTCCGCGAGAGG 60.047 61.111 8.23 4.88 36.88 3.69
2455 2643 4.760047 TTGGCTTCCGCGAGAGGC 62.760 66.667 22.13 22.13 46.57 4.70
2463 2651 4.498520 CGCGAGAGGCACGGTCAT 62.499 66.667 0.00 0.00 43.84 3.06
2464 2652 2.887568 GCGAGAGGCACGGTCATG 60.888 66.667 0.00 0.00 42.87 3.07
2465 2653 2.887568 CGAGAGGCACGGTCATGC 60.888 66.667 0.00 0.00 45.34 4.06
2471 2659 2.480555 GCACGGTCATGCCTTTCG 59.519 61.111 4.92 0.00 39.86 3.46
2472 2660 2.032634 GCACGGTCATGCCTTTCGA 61.033 57.895 4.92 0.00 39.86 3.71
2473 2661 1.573829 GCACGGTCATGCCTTTCGAA 61.574 55.000 0.00 0.00 39.86 3.71
2474 2662 0.871722 CACGGTCATGCCTTTCGAAA 59.128 50.000 10.71 10.71 34.25 3.46
2475 2663 1.135972 CACGGTCATGCCTTTCGAAAG 60.136 52.381 27.45 27.45 35.79 2.62
2476 2664 0.179189 CGGTCATGCCTTTCGAAAGC 60.179 55.000 28.68 23.31 34.69 3.51
2477 2665 0.179189 GGTCATGCCTTTCGAAAGCG 60.179 55.000 28.68 22.27 34.69 4.68
2478 2666 0.179189 GTCATGCCTTTCGAAAGCGG 60.179 55.000 28.68 19.71 38.28 5.52
2479 2667 1.137404 CATGCCTTTCGAAAGCGGG 59.863 57.895 28.68 19.04 38.28 6.13
2480 2668 1.002624 ATGCCTTTCGAAAGCGGGA 60.003 52.632 28.68 20.17 38.28 5.14
2481 2669 0.608035 ATGCCTTTCGAAAGCGGGAA 60.608 50.000 28.68 14.29 38.28 3.97
2482 2670 0.820074 TGCCTTTCGAAAGCGGGAAA 60.820 50.000 28.68 8.89 38.28 3.13
2483 2671 0.312729 GCCTTTCGAAAGCGGGAAAA 59.687 50.000 28.68 0.00 38.28 2.29
2484 2672 1.269361 GCCTTTCGAAAGCGGGAAAAA 60.269 47.619 28.68 0.00 38.28 1.94
2522 2710 3.754091 GCACGATTTTGCTTCCGC 58.246 55.556 0.00 0.00 39.59 5.54
2523 2711 2.145905 GCACGATTTTGCTTCCGCG 61.146 57.895 0.00 0.00 39.59 6.46
2524 2712 1.495509 CACGATTTTGCTTCCGCGA 59.504 52.632 8.23 0.00 39.65 5.87
2525 2713 0.519175 CACGATTTTGCTTCCGCGAG 60.519 55.000 8.23 0.00 39.65 5.03
2526 2714 0.669318 ACGATTTTGCTTCCGCGAGA 60.669 50.000 8.23 0.00 39.65 4.04
2527 2715 0.025513 CGATTTTGCTTCCGCGAGAG 59.974 55.000 8.23 5.93 39.65 3.20
2528 2716 0.375106 GATTTTGCTTCCGCGAGAGG 59.625 55.000 8.23 4.88 39.65 3.69
2532 2720 2.417516 GCTTCCGCGAGAGGCATA 59.582 61.111 20.89 0.00 46.54 3.14
2533 2721 1.227263 GCTTCCGCGAGAGGCATAA 60.227 57.895 20.89 0.00 46.54 1.90
2534 2722 0.601311 GCTTCCGCGAGAGGCATAAT 60.601 55.000 20.89 0.00 46.54 1.28
2535 2723 1.871080 CTTCCGCGAGAGGCATAATT 58.129 50.000 8.23 0.00 43.84 1.40
2536 2724 2.213499 CTTCCGCGAGAGGCATAATTT 58.787 47.619 8.23 0.00 43.84 1.82
2537 2725 2.325583 TCCGCGAGAGGCATAATTTT 57.674 45.000 8.23 0.00 43.84 1.82
2538 2726 1.939934 TCCGCGAGAGGCATAATTTTG 59.060 47.619 8.23 0.00 43.84 2.44
2539 2727 1.597937 CCGCGAGAGGCATAATTTTGC 60.598 52.381 8.23 11.94 43.84 3.68
2540 2728 1.331756 CGCGAGAGGCATAATTTTGCT 59.668 47.619 18.46 6.67 43.84 3.91
2541 2729 2.223340 CGCGAGAGGCATAATTTTGCTT 60.223 45.455 18.46 12.43 43.84 3.91
2542 2730 3.366719 GCGAGAGGCATAATTTTGCTTC 58.633 45.455 20.41 20.41 46.00 3.86
2547 2735 5.734855 GAGGCATAATTTTGCTTCTACGA 57.265 39.130 20.61 0.00 43.28 3.43
2548 2736 5.741388 AGGCATAATTTTGCTTCTACGAG 57.259 39.130 18.46 0.00 42.38 4.18
2549 2737 5.428253 AGGCATAATTTTGCTTCTACGAGA 58.572 37.500 18.46 0.00 42.38 4.04
2550 2738 5.525378 AGGCATAATTTTGCTTCTACGAGAG 59.475 40.000 18.46 0.00 42.38 3.20
2551 2739 5.277538 GGCATAATTTTGCTTCTACGAGAGG 60.278 44.000 18.46 0.00 42.38 3.69
2552 2740 5.742446 CATAATTTTGCTTCTACGAGAGGC 58.258 41.667 10.56 10.56 46.21 4.70
2555 2743 4.386245 GCTTCTACGAGAGGCACG 57.614 61.111 11.99 0.00 45.45 5.34
2556 2744 1.226717 GCTTCTACGAGAGGCACGG 60.227 63.158 11.99 0.00 45.45 4.94
2557 2745 1.226717 CTTCTACGAGAGGCACGGC 60.227 63.158 0.00 0.00 34.93 5.68
2572 2760 3.758172 GGCCGTGCCTCTCAAAAA 58.242 55.556 7.58 0.00 46.69 1.94
2573 2761 1.581447 GGCCGTGCCTCTCAAAAAG 59.419 57.895 7.58 0.00 46.69 2.27
2574 2762 1.581447 GCCGTGCCTCTCAAAAAGG 59.419 57.895 0.00 0.00 36.95 3.11
2581 2769 2.997485 CCTCTCAAAAAGGCTTTCGG 57.003 50.000 13.76 8.62 0.00 4.30
2582 2770 2.504367 CCTCTCAAAAAGGCTTTCGGA 58.496 47.619 13.76 12.40 0.00 4.55
2583 2771 2.884639 CCTCTCAAAAAGGCTTTCGGAA 59.115 45.455 13.76 4.77 0.00 4.30
2584 2772 3.317993 CCTCTCAAAAAGGCTTTCGGAAA 59.682 43.478 13.76 2.78 0.00 3.13
2585 2773 4.540824 CTCTCAAAAAGGCTTTCGGAAAG 58.459 43.478 22.96 22.96 41.46 2.62
2586 2774 3.317993 TCTCAAAAAGGCTTTCGGAAAGG 59.682 43.478 26.80 11.96 38.93 3.11
2587 2775 2.364002 TCAAAAAGGCTTTCGGAAAGGG 59.636 45.455 26.80 8.66 38.93 3.95
2588 2776 2.364002 CAAAAAGGCTTTCGGAAAGGGA 59.636 45.455 26.80 0.00 38.93 4.20
2589 2777 2.375014 AAAGGCTTTCGGAAAGGGAA 57.625 45.000 26.80 0.00 38.93 3.97
2590 2778 2.375014 AAGGCTTTCGGAAAGGGAAA 57.625 45.000 26.80 0.00 38.93 3.13
2591 2779 2.375014 AGGCTTTCGGAAAGGGAAAA 57.625 45.000 26.80 0.00 38.93 2.29
2592 2780 2.673258 AGGCTTTCGGAAAGGGAAAAA 58.327 42.857 26.80 0.00 38.93 1.94
2607 2795 3.021451 AAAAAGTGCTCCCGGTCTG 57.979 52.632 0.00 0.00 0.00 3.51
2608 2796 0.537371 AAAAAGTGCTCCCGGTCTGG 60.537 55.000 0.00 0.00 37.55 3.86
2609 2797 3.553095 AAAGTGCTCCCGGTCTGGC 62.553 63.158 0.00 0.00 35.87 4.85
2613 2801 4.035102 GCTCCCGGTCTGGCCTTT 62.035 66.667 3.32 0.00 35.87 3.11
2614 2802 2.757077 CTCCCGGTCTGGCCTTTT 59.243 61.111 3.32 0.00 35.87 2.27
2615 2803 1.377333 CTCCCGGTCTGGCCTTTTC 60.377 63.158 3.32 0.00 35.87 2.29
2616 2804 2.746277 CCCGGTCTGGCCTTTTCG 60.746 66.667 3.32 3.08 35.87 3.46
2617 2805 2.032071 CCGGTCTGGCCTTTTCGT 59.968 61.111 3.32 0.00 34.25 3.85
2618 2806 2.033194 CCGGTCTGGCCTTTTCGTC 61.033 63.158 3.32 0.00 34.25 4.20
2619 2807 1.004918 CGGTCTGGCCTTTTCGTCT 60.005 57.895 3.32 0.00 34.25 4.18
2620 2808 1.291877 CGGTCTGGCCTTTTCGTCTG 61.292 60.000 3.32 0.00 34.25 3.51
2621 2809 0.034896 GGTCTGGCCTTTTCGTCTGA 59.965 55.000 3.32 0.00 0.00 3.27
2622 2810 1.339151 GGTCTGGCCTTTTCGTCTGAT 60.339 52.381 3.32 0.00 0.00 2.90
2623 2811 2.427506 GTCTGGCCTTTTCGTCTGATT 58.572 47.619 3.32 0.00 0.00 2.57
2624 2812 2.814336 GTCTGGCCTTTTCGTCTGATTT 59.186 45.455 3.32 0.00 0.00 2.17
2625 2813 3.253432 GTCTGGCCTTTTCGTCTGATTTT 59.747 43.478 3.32 0.00 0.00 1.82
2626 2814 3.502211 TCTGGCCTTTTCGTCTGATTTTC 59.498 43.478 3.32 0.00 0.00 2.29
2627 2815 3.486383 TGGCCTTTTCGTCTGATTTTCT 58.514 40.909 3.32 0.00 0.00 2.52
2628 2816 3.888930 TGGCCTTTTCGTCTGATTTTCTT 59.111 39.130 3.32 0.00 0.00 2.52
2629 2817 4.340950 TGGCCTTTTCGTCTGATTTTCTTT 59.659 37.500 3.32 0.00 0.00 2.52
2630 2818 4.681483 GGCCTTTTCGTCTGATTTTCTTTG 59.319 41.667 0.00 0.00 0.00 2.77
2631 2819 5.507315 GGCCTTTTCGTCTGATTTTCTTTGA 60.507 40.000 0.00 0.00 0.00 2.69
2632 2820 5.977129 GCCTTTTCGTCTGATTTTCTTTGAA 59.023 36.000 0.00 0.00 0.00 2.69
2633 2821 6.475402 GCCTTTTCGTCTGATTTTCTTTGAAA 59.525 34.615 0.00 0.00 0.00 2.69
2634 2822 7.515215 GCCTTTTCGTCTGATTTTCTTTGAAAC 60.515 37.037 0.00 0.00 0.00 2.78
2635 2823 7.487829 CCTTTTCGTCTGATTTTCTTTGAAACA 59.512 33.333 0.00 0.00 0.00 2.83
2636 2824 8.749841 TTTTCGTCTGATTTTCTTTGAAACAA 57.250 26.923 0.00 0.00 0.00 2.83
2637 2825 8.749841 TTTCGTCTGATTTTCTTTGAAACAAA 57.250 26.923 0.00 0.00 0.00 2.83
2638 2826 8.749841 TTCGTCTGATTTTCTTTGAAACAAAA 57.250 26.923 0.00 0.00 0.00 2.44
2639 2827 8.749841 TCGTCTGATTTTCTTTGAAACAAAAA 57.250 26.923 0.00 0.00 0.00 1.94
2640 2828 8.859156 TCGTCTGATTTTCTTTGAAACAAAAAG 58.141 29.630 0.00 0.00 36.22 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.674441 TCGTCTCACGTCTGTCTGTTT 59.326 47.619 0.00 0.00 43.14 2.83
18 19 1.002684 GTCGTCTCACGTCTGTCTGTT 60.003 52.381 0.00 0.00 43.14 3.16
19 20 0.587285 GTCGTCTCACGTCTGTCTGT 59.413 55.000 0.00 0.00 43.14 3.41
20 21 0.869068 AGTCGTCTCACGTCTGTCTG 59.131 55.000 0.00 0.00 43.14 3.51
25 26 2.678956 GCGGAGTCGTCTCACGTCT 61.679 63.158 11.73 0.00 42.19 4.18
73 74 1.141019 GCACTCGGACCGCTCAATA 59.859 57.895 9.66 0.00 0.00 1.90
197 213 4.773117 GGAGCCGTGGTCGTCGTC 62.773 72.222 0.00 0.00 35.01 4.20
199 215 4.052229 AAGGAGCCGTGGTCGTCG 62.052 66.667 0.00 0.00 35.01 5.12
200 216 2.432628 CAAGGAGCCGTGGTCGTC 60.433 66.667 0.00 0.00 35.01 4.20
201 217 3.222354 GACAAGGAGCCGTGGTCGT 62.222 63.158 7.35 0.00 35.01 4.34
202 218 2.432628 GACAAGGAGCCGTGGTCG 60.433 66.667 7.35 0.00 0.00 4.79
203 219 2.047179 GGACAAGGAGCCGTGGTC 60.047 66.667 7.35 4.05 0.00 4.02
226 251 1.964223 GCTAGTGGAGGATCATCCGAA 59.036 52.381 20.81 8.24 42.75 4.30
288 313 1.228367 CACCACTTCCTTGCTGGCT 60.228 57.895 0.00 0.00 35.26 4.75
362 391 8.432110 TCACATAATTCACATAAACAGCGTAT 57.568 30.769 0.00 0.00 0.00 3.06
368 397 9.689976 CCAAAGTTCACATAATTCACATAAACA 57.310 29.630 0.00 0.00 0.00 2.83
512 548 6.843473 TCTCATATCCGGTACCCTATATCT 57.157 41.667 6.25 0.00 0.00 1.98
615 656 2.042259 CAGCTGCTGCAAATCCGGA 61.042 57.895 17.73 6.61 42.74 5.14
629 679 5.089970 TGATTGTTACAGCATCTACAGCT 57.910 39.130 0.00 0.00 44.62 4.24
919 974 2.679716 GGAGCCTTGCAGGTGGAT 59.320 61.111 6.65 0.20 37.80 3.41
1345 1419 5.702209 TGACATATAAGGCTGTGTGCATATG 59.298 40.000 0.00 0.00 45.15 1.78
1346 1420 5.868454 TGACATATAAGGCTGTGTGCATAT 58.132 37.500 0.00 0.00 45.15 1.78
1347 1421 5.289083 TGACATATAAGGCTGTGTGCATA 57.711 39.130 0.00 0.00 45.15 3.14
1348 1422 4.155063 TGACATATAAGGCTGTGTGCAT 57.845 40.909 0.00 0.00 45.15 3.96
1349 1423 3.625649 TGACATATAAGGCTGTGTGCA 57.374 42.857 0.00 0.00 45.15 4.57
1350 1424 3.251729 CCATGACATATAAGGCTGTGTGC 59.748 47.826 0.00 0.00 41.94 4.57
1351 1425 4.454678 ACCATGACATATAAGGCTGTGTG 58.545 43.478 0.00 0.00 0.00 3.82
1352 1426 4.778213 ACCATGACATATAAGGCTGTGT 57.222 40.909 0.00 0.00 0.00 3.72
1387 1469 1.412343 TGCCTGATGCTATGACGCTAA 59.588 47.619 0.00 0.00 42.00 3.09
1463 1545 1.267121 AGTCGTAGGGCACATTCACT 58.733 50.000 0.00 0.00 0.00 3.41
1709 1791 1.135402 GGCATCCACGGATCAAACAAC 60.135 52.381 0.00 0.00 31.62 3.32
1787 1869 9.810231 GAAATGAATTTTCGTATGCATTTGTTT 57.190 25.926 3.54 0.00 41.65 2.83
1792 1874 6.812656 TGCAGAAATGAATTTTCGTATGCATT 59.187 30.769 3.54 0.00 46.89 3.56
1807 1889 1.071542 TGAACTCGGGTGCAGAAATGA 59.928 47.619 0.00 0.00 0.00 2.57
1811 1893 0.036388 GGATGAACTCGGGTGCAGAA 60.036 55.000 0.74 0.00 33.98 3.02
1819 1901 1.811266 CAGGTGCGGATGAACTCGG 60.811 63.158 0.00 0.00 0.00 4.63
1821 1903 3.490890 GCAGGTGCGGATGAACTC 58.509 61.111 0.00 0.00 0.00 3.01
1887 1969 0.996583 TGGGCCCGACTCCTAATTTT 59.003 50.000 19.37 0.00 0.00 1.82
1888 1970 0.546598 CTGGGCCCGACTCCTAATTT 59.453 55.000 19.37 0.00 0.00 1.82
1889 1971 1.984288 GCTGGGCCCGACTCCTAATT 61.984 60.000 19.37 0.00 0.00 1.40
1890 1972 2.444256 GCTGGGCCCGACTCCTAAT 61.444 63.158 19.37 0.00 0.00 1.73
1941 2127 2.151202 GTCGGAGATTTTGCAACCAGA 58.849 47.619 0.00 0.00 40.67 3.86
1942 2128 1.135972 CGTCGGAGATTTTGCAACCAG 60.136 52.381 0.00 0.00 40.67 4.00
1944 2130 0.454452 GCGTCGGAGATTTTGCAACC 60.454 55.000 0.00 0.00 40.67 3.77
2007 2195 0.251787 GCCCATCCCAAGTGAAAGGT 60.252 55.000 0.00 0.00 0.00 3.50
2036 2224 4.104579 AGCCCATCCCAAGATTTTGTTTTT 59.895 37.500 0.00 0.00 32.21 1.94
2037 2225 3.652387 AGCCCATCCCAAGATTTTGTTTT 59.348 39.130 0.00 0.00 32.21 2.43
2038 2226 3.008266 CAGCCCATCCCAAGATTTTGTTT 59.992 43.478 0.00 0.00 32.21 2.83
2039 2227 2.568509 CAGCCCATCCCAAGATTTTGTT 59.431 45.455 0.00 0.00 32.21 2.83
2040 2228 2.181975 CAGCCCATCCCAAGATTTTGT 58.818 47.619 0.00 0.00 32.21 2.83
2041 2229 2.429610 CTCAGCCCATCCCAAGATTTTG 59.570 50.000 0.00 0.00 0.00 2.44
2042 2230 2.312741 TCTCAGCCCATCCCAAGATTTT 59.687 45.455 0.00 0.00 0.00 1.82
2043 2231 1.925255 TCTCAGCCCATCCCAAGATTT 59.075 47.619 0.00 0.00 0.00 2.17
2044 2232 1.493871 CTCTCAGCCCATCCCAAGATT 59.506 52.381 0.00 0.00 0.00 2.40
2045 2233 1.138568 CTCTCAGCCCATCCCAAGAT 58.861 55.000 0.00 0.00 0.00 2.40
2046 2234 1.630126 GCTCTCAGCCCATCCCAAGA 61.630 60.000 0.00 0.00 34.48 3.02
2047 2235 1.153005 GCTCTCAGCCCATCCCAAG 60.153 63.158 0.00 0.00 34.48 3.61
2048 2236 3.001514 GCTCTCAGCCCATCCCAA 58.998 61.111 0.00 0.00 34.48 4.12
2049 2237 3.473647 CGCTCTCAGCCCATCCCA 61.474 66.667 0.00 0.00 38.18 4.37
2050 2238 3.474570 ACGCTCTCAGCCCATCCC 61.475 66.667 0.00 0.00 38.18 3.85
2051 2239 2.202987 CACGCTCTCAGCCCATCC 60.203 66.667 0.00 0.00 38.18 3.51
2052 2240 1.520342 GACACGCTCTCAGCCCATC 60.520 63.158 0.00 0.00 38.18 3.51
2053 2241 1.620739 ATGACACGCTCTCAGCCCAT 61.621 55.000 0.00 0.00 38.18 4.00
2054 2242 1.830587 AATGACACGCTCTCAGCCCA 61.831 55.000 0.00 0.00 38.18 5.36
2055 2243 0.674895 AAATGACACGCTCTCAGCCC 60.675 55.000 0.00 0.00 38.18 5.19
2056 2244 0.445436 CAAATGACACGCTCTCAGCC 59.555 55.000 0.00 0.00 38.18 4.85
2057 2245 1.127582 GTCAAATGACACGCTCTCAGC 59.872 52.381 8.63 0.00 44.18 4.26
2058 2246 1.388093 CGTCAAATGACACGCTCTCAG 59.612 52.381 13.51 0.00 44.99 3.35
2059 2247 1.418373 CGTCAAATGACACGCTCTCA 58.582 50.000 13.51 0.00 44.99 3.27
2065 2253 1.125021 GACTGAGCGTCAAATGACACG 59.875 52.381 13.51 2.70 44.99 4.49
2066 2254 2.863658 GACTGAGCGTCAAATGACAC 57.136 50.000 13.51 4.04 44.99 3.67
2078 2266 2.016704 CACGTGACGGTGACTGAGC 61.017 63.158 10.90 0.00 40.38 4.26
2079 2267 0.660595 GACACGTGACGGTGACTGAG 60.661 60.000 25.01 0.00 40.38 3.35
2080 2268 1.357690 GACACGTGACGGTGACTGA 59.642 57.895 25.01 0.00 40.38 3.41
2081 2269 2.009226 CGACACGTGACGGTGACTG 61.009 63.158 28.36 0.00 40.38 3.51
2082 2270 2.330393 CGACACGTGACGGTGACT 59.670 61.111 28.36 1.34 40.38 3.41
2083 2271 3.392440 GCGACACGTGACGGTGAC 61.392 66.667 34.04 18.35 40.38 3.67
2084 2272 3.890221 TGCGACACGTGACGGTGA 61.890 61.111 34.04 7.47 40.38 4.02
2085 2273 3.688330 GTGCGACACGTGACGGTG 61.688 66.667 34.04 13.49 43.54 4.94
2086 2274 3.896133 AGTGCGACACGTGACGGT 61.896 61.111 34.04 9.34 39.64 4.83
2087 2275 3.394874 CAGTGCGACACGTGACGG 61.395 66.667 34.04 18.35 39.64 4.79
2088 2276 2.228241 AACAGTGCGACACGTGACG 61.228 57.895 30.84 30.84 39.64 4.35
2089 2277 1.272715 CAACAGTGCGACACGTGAC 59.727 57.895 25.01 16.07 39.64 3.67
2090 2278 1.880796 CCAACAGTGCGACACGTGA 60.881 57.895 25.01 0.00 39.64 4.35
2091 2279 2.625906 CCAACAGTGCGACACGTG 59.374 61.111 15.48 15.48 39.64 4.49
2092 2280 3.269347 GCCAACAGTGCGACACGT 61.269 61.111 4.69 0.00 39.64 4.49
2100 2288 0.318107 CAAAGGAAGCGCCAACAGTG 60.318 55.000 2.29 0.00 40.02 3.66
2101 2289 0.465460 TCAAAGGAAGCGCCAACAGT 60.465 50.000 2.29 0.00 40.02 3.55
2102 2290 0.667993 TTCAAAGGAAGCGCCAACAG 59.332 50.000 2.29 0.00 40.02 3.16
2103 2291 1.327303 ATTCAAAGGAAGCGCCAACA 58.673 45.000 2.29 0.00 40.02 3.33
2104 2292 2.438868 AATTCAAAGGAAGCGCCAAC 57.561 45.000 2.29 0.00 40.02 3.77
2105 2293 3.467374 AAAATTCAAAGGAAGCGCCAA 57.533 38.095 2.29 0.00 40.02 4.52
2106 2294 3.467374 AAAAATTCAAAGGAAGCGCCA 57.533 38.095 2.29 0.00 40.02 5.69
2134 2322 4.619437 AGCCAAAAACTCGTACGAAAAA 57.381 36.364 20.00 0.00 0.00 1.94
2135 2323 4.619437 AAGCCAAAAACTCGTACGAAAA 57.381 36.364 20.00 0.00 0.00 2.29
2136 2324 4.619437 AAAGCCAAAAACTCGTACGAAA 57.381 36.364 20.00 0.00 0.00 3.46
2137 2325 4.619437 AAAAGCCAAAAACTCGTACGAA 57.381 36.364 20.00 3.35 0.00 3.85
2138 2326 4.619437 AAAAAGCCAAAAACTCGTACGA 57.381 36.364 18.41 18.41 0.00 3.43
2139 2327 6.793479 TTTAAAAAGCCAAAAACTCGTACG 57.207 33.333 9.53 9.53 0.00 3.67
2140 2328 7.306925 CCCATTTAAAAAGCCAAAAACTCGTAC 60.307 37.037 0.00 0.00 0.00 3.67
2141 2329 6.702282 CCCATTTAAAAAGCCAAAAACTCGTA 59.298 34.615 0.00 0.00 0.00 3.43
2142 2330 5.525745 CCCATTTAAAAAGCCAAAAACTCGT 59.474 36.000 0.00 0.00 0.00 4.18
2143 2331 5.525745 ACCCATTTAAAAAGCCAAAAACTCG 59.474 36.000 0.00 0.00 0.00 4.18
2144 2332 6.935741 ACCCATTTAAAAAGCCAAAAACTC 57.064 33.333 0.00 0.00 0.00 3.01
2145 2333 7.710676 AAACCCATTTAAAAAGCCAAAAACT 57.289 28.000 0.00 0.00 0.00 2.66
2146 2334 8.764524 AAAAACCCATTTAAAAAGCCAAAAAC 57.235 26.923 0.00 0.00 0.00 2.43
2147 2335 7.755373 CGAAAAACCCATTTAAAAAGCCAAAAA 59.245 29.630 0.00 0.00 0.00 1.94
2148 2336 7.120726 TCGAAAAACCCATTTAAAAAGCCAAAA 59.879 29.630 0.00 0.00 0.00 2.44
2149 2337 6.598064 TCGAAAAACCCATTTAAAAAGCCAAA 59.402 30.769 0.00 0.00 0.00 3.28
2150 2338 6.113411 TCGAAAAACCCATTTAAAAAGCCAA 58.887 32.000 0.00 0.00 0.00 4.52
2151 2339 5.671493 TCGAAAAACCCATTTAAAAAGCCA 58.329 33.333 0.00 0.00 0.00 4.75
2152 2340 6.795098 ATCGAAAAACCCATTTAAAAAGCC 57.205 33.333 0.00 0.00 0.00 4.35
2153 2341 9.509855 AAAAATCGAAAAACCCATTTAAAAAGC 57.490 25.926 0.00 0.00 0.00 3.51
2157 2345 8.831550 CCAGAAAAATCGAAAAACCCATTTAAA 58.168 29.630 0.00 0.00 0.00 1.52
2158 2346 7.041712 GCCAGAAAAATCGAAAAACCCATTTAA 60.042 33.333 0.00 0.00 0.00 1.52
2159 2347 6.425417 GCCAGAAAAATCGAAAAACCCATTTA 59.575 34.615 0.00 0.00 0.00 1.40
2160 2348 5.238432 GCCAGAAAAATCGAAAAACCCATTT 59.762 36.000 0.00 0.00 0.00 2.32
2161 2349 4.754618 GCCAGAAAAATCGAAAAACCCATT 59.245 37.500 0.00 0.00 0.00 3.16
2162 2350 4.040339 AGCCAGAAAAATCGAAAAACCCAT 59.960 37.500 0.00 0.00 0.00 4.00
2163 2351 3.386402 AGCCAGAAAAATCGAAAAACCCA 59.614 39.130 0.00 0.00 0.00 4.51
2164 2352 3.990092 AGCCAGAAAAATCGAAAAACCC 58.010 40.909 0.00 0.00 0.00 4.11
2165 2353 5.984233 AAAGCCAGAAAAATCGAAAAACC 57.016 34.783 0.00 0.00 0.00 3.27
2166 2354 6.120157 CGAAAAGCCAGAAAAATCGAAAAAC 58.880 36.000 0.00 0.00 0.00 2.43
2167 2355 5.233263 CCGAAAAGCCAGAAAAATCGAAAAA 59.767 36.000 0.00 0.00 0.00 1.94
2168 2356 4.742659 CCGAAAAGCCAGAAAAATCGAAAA 59.257 37.500 0.00 0.00 0.00 2.29
2169 2357 4.202070 ACCGAAAAGCCAGAAAAATCGAAA 60.202 37.500 0.00 0.00 0.00 3.46
2170 2358 3.316868 ACCGAAAAGCCAGAAAAATCGAA 59.683 39.130 0.00 0.00 0.00 3.71
2171 2359 2.882137 ACCGAAAAGCCAGAAAAATCGA 59.118 40.909 0.00 0.00 0.00 3.59
2172 2360 3.282831 ACCGAAAAGCCAGAAAAATCG 57.717 42.857 0.00 0.00 0.00 3.34
2173 2361 5.984233 AAAACCGAAAAGCCAGAAAAATC 57.016 34.783 0.00 0.00 0.00 2.17
2174 2362 5.877564 TCAAAAACCGAAAAGCCAGAAAAAT 59.122 32.000 0.00 0.00 0.00 1.82
2175 2363 5.120986 GTCAAAAACCGAAAAGCCAGAAAAA 59.879 36.000 0.00 0.00 0.00 1.94
2176 2364 4.627900 GTCAAAAACCGAAAAGCCAGAAAA 59.372 37.500 0.00 0.00 0.00 2.29
2177 2365 4.177783 GTCAAAAACCGAAAAGCCAGAAA 58.822 39.130 0.00 0.00 0.00 2.52
2178 2366 3.429684 GGTCAAAAACCGAAAAGCCAGAA 60.430 43.478 0.00 0.00 38.58 3.02
2179 2367 2.100087 GGTCAAAAACCGAAAAGCCAGA 59.900 45.455 0.00 0.00 38.58 3.86
2180 2368 2.469826 GGTCAAAAACCGAAAAGCCAG 58.530 47.619 0.00 0.00 38.58 4.85
2181 2369 2.588027 GGTCAAAAACCGAAAAGCCA 57.412 45.000 0.00 0.00 38.58 4.75
2190 2378 5.182570 AGCTAAAATAGACCGGTCAAAAACC 59.817 40.000 35.00 15.94 45.45 3.27
2191 2379 6.250344 AGCTAAAATAGACCGGTCAAAAAC 57.750 37.500 35.00 16.33 0.00 2.43
2192 2380 6.887626 AAGCTAAAATAGACCGGTCAAAAA 57.112 33.333 35.00 18.07 0.00 1.94
2193 2381 6.887626 AAAGCTAAAATAGACCGGTCAAAA 57.112 33.333 35.00 20.58 0.00 2.44
2194 2382 6.294286 CCAAAAGCTAAAATAGACCGGTCAAA 60.294 38.462 35.00 23.14 0.00 2.69
2195 2383 5.182380 CCAAAAGCTAAAATAGACCGGTCAA 59.818 40.000 35.00 12.56 0.00 3.18
2196 2384 4.698304 CCAAAAGCTAAAATAGACCGGTCA 59.302 41.667 35.00 21.39 0.00 4.02
2197 2385 4.939439 TCCAAAAGCTAAAATAGACCGGTC 59.061 41.667 27.67 27.67 0.00 4.79
2198 2386 4.698780 GTCCAAAAGCTAAAATAGACCGGT 59.301 41.667 6.92 6.92 0.00 5.28
2199 2387 4.095932 GGTCCAAAAGCTAAAATAGACCGG 59.904 45.833 0.00 0.00 33.81 5.28
2200 2388 4.698304 TGGTCCAAAAGCTAAAATAGACCG 59.302 41.667 12.94 0.00 44.40 4.79
2201 2389 6.584185 TTGGTCCAAAAGCTAAAATAGACC 57.416 37.500 0.40 11.59 42.32 3.85
2202 2390 9.489084 AAAATTGGTCCAAAAGCTAAAATAGAC 57.511 29.630 8.75 0.00 0.00 2.59
2253 2441 5.656416 TCCCTCTCACAGAAAAACATGTTTT 59.344 36.000 27.01 27.01 43.88 2.43
2254 2442 5.200483 TCCCTCTCACAGAAAAACATGTTT 58.800 37.500 18.13 18.13 0.00 2.83
2255 2443 4.792068 TCCCTCTCACAGAAAAACATGTT 58.208 39.130 4.92 4.92 0.00 2.71
2256 2444 4.437682 TCCCTCTCACAGAAAAACATGT 57.562 40.909 0.00 0.00 0.00 3.21
2257 2445 4.157289 CCATCCCTCTCACAGAAAAACATG 59.843 45.833 0.00 0.00 0.00 3.21
2258 2446 4.202609 ACCATCCCTCTCACAGAAAAACAT 60.203 41.667 0.00 0.00 0.00 2.71
2259 2447 3.138283 ACCATCCCTCTCACAGAAAAACA 59.862 43.478 0.00 0.00 0.00 2.83
2260 2448 3.756117 ACCATCCCTCTCACAGAAAAAC 58.244 45.455 0.00 0.00 0.00 2.43
2261 2449 4.453480 AACCATCCCTCTCACAGAAAAA 57.547 40.909 0.00 0.00 0.00 1.94
2262 2450 4.453480 AAACCATCCCTCTCACAGAAAA 57.547 40.909 0.00 0.00 0.00 2.29
2263 2451 4.144297 CAAAACCATCCCTCTCACAGAAA 58.856 43.478 0.00 0.00 0.00 2.52
2264 2452 3.754965 CAAAACCATCCCTCTCACAGAA 58.245 45.455 0.00 0.00 0.00 3.02
2265 2453 2.553028 GCAAAACCATCCCTCTCACAGA 60.553 50.000 0.00 0.00 0.00 3.41
2266 2454 1.815003 GCAAAACCATCCCTCTCACAG 59.185 52.381 0.00 0.00 0.00 3.66
2267 2455 1.425066 AGCAAAACCATCCCTCTCACA 59.575 47.619 0.00 0.00 0.00 3.58
2268 2456 2.206576 AGCAAAACCATCCCTCTCAC 57.793 50.000 0.00 0.00 0.00 3.51
2269 2457 2.555227 GGAAGCAAAACCATCCCTCTCA 60.555 50.000 0.00 0.00 0.00 3.27
2270 2458 2.095461 GGAAGCAAAACCATCCCTCTC 58.905 52.381 0.00 0.00 0.00 3.20
2271 2459 1.614317 CGGAAGCAAAACCATCCCTCT 60.614 52.381 0.00 0.00 0.00 3.69
2272 2460 0.811281 CGGAAGCAAAACCATCCCTC 59.189 55.000 0.00 0.00 0.00 4.30
2273 2461 0.112412 ACGGAAGCAAAACCATCCCT 59.888 50.000 0.00 0.00 0.00 4.20
2274 2462 0.243636 CACGGAAGCAAAACCATCCC 59.756 55.000 0.00 0.00 0.00 3.85
2275 2463 1.200020 CTCACGGAAGCAAAACCATCC 59.800 52.381 0.00 0.00 0.00 3.51
2276 2464 2.151202 TCTCACGGAAGCAAAACCATC 58.849 47.619 0.00 0.00 0.00 3.51
2277 2465 2.270352 TCTCACGGAAGCAAAACCAT 57.730 45.000 0.00 0.00 0.00 3.55
2278 2466 1.946768 CTTCTCACGGAAGCAAAACCA 59.053 47.619 0.00 0.00 43.88 3.67
2279 2467 2.688364 CTTCTCACGGAAGCAAAACC 57.312 50.000 0.00 0.00 43.88 3.27
2291 2479 3.044059 GCATGGCCGTGCTTCTCAC 62.044 63.158 37.43 11.45 41.82 3.51
2292 2480 2.747460 GCATGGCCGTGCTTCTCA 60.747 61.111 37.43 0.00 41.82 3.27
2293 2481 3.512516 GGCATGGCCGTGCTTCTC 61.513 66.667 40.89 25.30 44.45 2.87
2303 2491 0.185901 TCATTTCCTAGGGGCATGGC 59.814 55.000 11.56 11.56 0.00 4.40
2304 2492 2.754012 TTCATTTCCTAGGGGCATGG 57.246 50.000 9.46 0.00 0.00 3.66
2325 2513 4.209080 CGCGGAAGAAGAAAAATGCTTTTT 59.791 37.500 0.00 4.57 44.93 1.94
2326 2514 3.735746 CGCGGAAGAAGAAAAATGCTTTT 59.264 39.130 0.00 0.00 37.46 2.27
2327 2515 3.004315 TCGCGGAAGAAGAAAAATGCTTT 59.996 39.130 6.13 0.00 0.00 3.51
2328 2516 2.552315 TCGCGGAAGAAGAAAAATGCTT 59.448 40.909 6.13 0.00 0.00 3.91
2329 2517 2.151202 TCGCGGAAGAAGAAAAATGCT 58.849 42.857 6.13 0.00 0.00 3.79
2330 2518 2.159627 TCTCGCGGAAGAAGAAAAATGC 59.840 45.455 6.13 0.00 0.00 3.56
2331 2519 3.181516 CCTCTCGCGGAAGAAGAAAAATG 60.182 47.826 6.13 0.00 0.00 2.32
2332 2520 3.003480 CCTCTCGCGGAAGAAGAAAAAT 58.997 45.455 6.13 0.00 0.00 1.82
2333 2521 2.413837 CCTCTCGCGGAAGAAGAAAAA 58.586 47.619 6.13 0.00 0.00 1.94
2334 2522 1.939838 GCCTCTCGCGGAAGAAGAAAA 60.940 52.381 6.13 0.00 0.00 2.29
2335 2523 0.389948 GCCTCTCGCGGAAGAAGAAA 60.390 55.000 6.13 0.00 0.00 2.52
2336 2524 1.215647 GCCTCTCGCGGAAGAAGAA 59.784 57.895 6.13 0.00 0.00 2.52
2337 2525 1.977009 TGCCTCTCGCGGAAGAAGA 60.977 57.895 6.13 0.00 42.08 2.87
2338 2526 1.807573 GTGCCTCTCGCGGAAGAAG 60.808 63.158 6.13 0.00 42.08 2.85
2339 2527 2.261671 GTGCCTCTCGCGGAAGAA 59.738 61.111 6.13 0.00 42.08 2.52
2340 2528 2.676822 AGTGCCTCTCGCGGAAGA 60.677 61.111 6.13 0.90 42.08 2.87
2341 2529 2.507992 CAGTGCCTCTCGCGGAAG 60.508 66.667 6.13 3.71 42.08 3.46
2342 2530 4.742201 GCAGTGCCTCTCGCGGAA 62.742 66.667 6.13 0.00 42.08 4.30
2352 2540 0.387565 TTTTCCTTTTCGGCAGTGCC 59.612 50.000 25.07 25.07 46.75 5.01
2353 2541 2.217429 TTTTTCCTTTTCGGCAGTGC 57.783 45.000 6.55 6.55 0.00 4.40
2377 2565 8.743099 CGCGAAAGAAAATAAAAAGAGAAAACT 58.257 29.630 0.00 0.00 0.00 2.66
2378 2566 8.739461 TCGCGAAAGAAAATAAAAAGAGAAAAC 58.261 29.630 6.20 0.00 0.00 2.43
2379 2567 8.844441 TCGCGAAAGAAAATAAAAAGAGAAAA 57.156 26.923 6.20 0.00 0.00 2.29
2380 2568 8.339714 TCTCGCGAAAGAAAATAAAAAGAGAAA 58.660 29.630 11.33 0.00 0.00 2.52
2381 2569 7.857569 TCTCGCGAAAGAAAATAAAAAGAGAA 58.142 30.769 11.33 0.00 0.00 2.87
2382 2570 7.384115 TCTCTCGCGAAAGAAAATAAAAAGAGA 59.616 33.333 10.27 10.03 33.81 3.10
2383 2571 7.475874 GTCTCTCGCGAAAGAAAATAAAAAGAG 59.524 37.037 14.83 9.63 0.00 2.85
2384 2572 7.042321 TGTCTCTCGCGAAAGAAAATAAAAAGA 60.042 33.333 14.83 0.00 0.00 2.52
2385 2573 7.058467 GTGTCTCTCGCGAAAGAAAATAAAAAG 59.942 37.037 14.83 0.00 0.00 2.27
2386 2574 6.849305 GTGTCTCTCGCGAAAGAAAATAAAAA 59.151 34.615 14.83 0.00 0.00 1.94
2387 2575 6.360329 GTGTCTCTCGCGAAAGAAAATAAAA 58.640 36.000 14.83 0.00 0.00 1.52
2388 2576 5.912528 GTGTCTCTCGCGAAAGAAAATAAA 58.087 37.500 14.83 0.00 0.00 1.40
2389 2577 5.511088 GTGTCTCTCGCGAAAGAAAATAA 57.489 39.130 14.83 0.00 0.00 1.40
2401 2589 1.630148 AGCATAAACGTGTCTCTCGC 58.370 50.000 0.00 0.00 0.00 5.03
2402 2590 2.599082 GGAAGCATAAACGTGTCTCTCG 59.401 50.000 0.00 0.00 0.00 4.04
2403 2591 2.599082 CGGAAGCATAAACGTGTCTCTC 59.401 50.000 0.00 0.00 0.00 3.20
2404 2592 2.607187 CGGAAGCATAAACGTGTCTCT 58.393 47.619 0.00 0.00 0.00 3.10
2419 2607 2.587194 CCATGCCTCTCGCGGAAG 60.587 66.667 6.13 3.71 42.08 3.46
2420 2608 2.463589 AAACCATGCCTCTCGCGGAA 62.464 55.000 6.13 0.00 42.08 4.30
2421 2609 2.954684 AAACCATGCCTCTCGCGGA 61.955 57.895 6.13 1.01 42.08 5.54
2422 2610 2.436646 AAACCATGCCTCTCGCGG 60.437 61.111 6.13 0.00 42.08 6.46
2423 2611 2.753966 CCAAACCATGCCTCTCGCG 61.754 63.158 0.00 0.00 42.08 5.87
2424 2612 3.056313 GCCAAACCATGCCTCTCGC 62.056 63.158 0.00 0.00 38.31 5.03
2425 2613 0.962356 AAGCCAAACCATGCCTCTCG 60.962 55.000 0.00 0.00 0.00 4.04
2426 2614 0.813821 GAAGCCAAACCATGCCTCTC 59.186 55.000 0.00 0.00 0.00 3.20
2427 2615 0.613012 GGAAGCCAAACCATGCCTCT 60.613 55.000 0.00 0.00 0.00 3.69
2428 2616 1.893062 GGAAGCCAAACCATGCCTC 59.107 57.895 0.00 0.00 0.00 4.70
2429 2617 1.978617 CGGAAGCCAAACCATGCCT 60.979 57.895 0.00 0.00 0.00 4.75
2430 2618 2.573340 CGGAAGCCAAACCATGCC 59.427 61.111 0.00 0.00 0.00 4.40
2447 2635 2.887568 CATGACCGTGCCTCTCGC 60.888 66.667 0.00 0.00 38.31 5.03
2448 2636 2.887568 GCATGACCGTGCCTCTCG 60.888 66.667 0.00 0.00 39.18 4.04
2454 2642 1.573829 TTCGAAAGGCATGACCGTGC 61.574 55.000 0.00 5.68 46.52 5.34
2455 2643 0.871722 TTTCGAAAGGCATGACCGTG 59.128 50.000 6.47 0.00 46.52 4.94
2456 2644 1.156736 CTTTCGAAAGGCATGACCGT 58.843 50.000 26.86 0.00 46.52 4.83
2457 2645 0.179189 GCTTTCGAAAGGCATGACCG 60.179 55.000 32.85 11.09 46.52 4.79
2458 2646 0.179189 CGCTTTCGAAAGGCATGACC 60.179 55.000 32.85 16.91 38.10 4.02
2459 2647 0.179189 CCGCTTTCGAAAGGCATGAC 60.179 55.000 32.85 17.53 38.10 3.06
2460 2648 1.305219 CCCGCTTTCGAAAGGCATGA 61.305 55.000 32.85 1.65 38.10 3.07
2461 2649 1.137404 CCCGCTTTCGAAAGGCATG 59.863 57.895 32.85 19.59 38.10 4.06
2462 2650 0.608035 TTCCCGCTTTCGAAAGGCAT 60.608 50.000 32.85 0.00 38.10 4.40
2463 2651 0.820074 TTTCCCGCTTTCGAAAGGCA 60.820 50.000 32.85 10.93 38.10 4.75
2464 2652 0.312729 TTTTCCCGCTTTCGAAAGGC 59.687 50.000 32.85 24.41 38.10 4.35
2465 2653 2.785713 TTTTTCCCGCTTTCGAAAGG 57.214 45.000 32.85 23.58 38.10 3.11
2516 2704 1.871080 AATTATGCCTCTCGCGGAAG 58.129 50.000 6.13 3.71 42.08 3.46
2517 2705 2.325583 AAATTATGCCTCTCGCGGAA 57.674 45.000 6.13 0.00 42.08 4.30
2518 2706 1.939934 CAAAATTATGCCTCTCGCGGA 59.060 47.619 6.13 1.01 42.08 5.54
2519 2707 1.597937 GCAAAATTATGCCTCTCGCGG 60.598 52.381 6.13 0.00 42.08 6.46
2520 2708 1.746760 GCAAAATTATGCCTCTCGCG 58.253 50.000 0.00 0.00 42.08 5.87
2521 2709 3.065925 AGAAGCAAAATTATGCCTCTCGC 59.934 43.478 0.00 0.00 42.04 5.03
2522 2710 4.889832 AGAAGCAAAATTATGCCTCTCG 57.110 40.909 0.00 0.00 42.04 4.04
2523 2711 5.523916 TCGTAGAAGCAAAATTATGCCTCTC 59.476 40.000 3.85 0.00 42.04 3.20
2528 2716 5.742446 CCTCTCGTAGAAGCAAAATTATGC 58.258 41.667 0.00 0.00 46.78 3.14
2529 2717 5.294306 TGCCTCTCGTAGAAGCAAAATTATG 59.706 40.000 5.91 0.00 34.84 1.90
2530 2718 5.294552 GTGCCTCTCGTAGAAGCAAAATTAT 59.705 40.000 8.95 0.00 38.52 1.28
2531 2719 4.630069 GTGCCTCTCGTAGAAGCAAAATTA 59.370 41.667 8.95 0.00 38.52 1.40
2532 2720 3.437049 GTGCCTCTCGTAGAAGCAAAATT 59.563 43.478 8.95 0.00 38.52 1.82
2533 2721 3.003480 GTGCCTCTCGTAGAAGCAAAAT 58.997 45.455 8.95 0.00 38.52 1.82
2534 2722 2.413837 GTGCCTCTCGTAGAAGCAAAA 58.586 47.619 8.95 0.00 38.52 2.44
2535 2723 1.668919 CGTGCCTCTCGTAGAAGCAAA 60.669 52.381 8.95 0.00 38.52 3.68
2536 2724 0.109272 CGTGCCTCTCGTAGAAGCAA 60.109 55.000 8.95 0.00 38.52 3.91
2537 2725 1.506718 CGTGCCTCTCGTAGAAGCA 59.493 57.895 4.65 4.65 35.28 3.91
2538 2726 1.226717 CCGTGCCTCTCGTAGAAGC 60.227 63.158 0.00 0.00 34.09 3.86
2539 2727 1.226717 GCCGTGCCTCTCGTAGAAG 60.227 63.158 0.00 0.00 34.09 2.85
2540 2728 2.707849 GGCCGTGCCTCTCGTAGAA 61.708 63.158 7.58 0.00 46.69 2.10
2541 2729 3.138798 GGCCGTGCCTCTCGTAGA 61.139 66.667 7.58 0.00 46.69 2.59
2556 2744 1.581447 CCTTTTTGAGAGGCACGGC 59.419 57.895 0.00 0.00 0.00 5.68
2562 2750 2.504367 TCCGAAAGCCTTTTTGAGAGG 58.496 47.619 0.00 0.00 37.35 3.69
2563 2751 4.540824 CTTTCCGAAAGCCTTTTTGAGAG 58.459 43.478 7.93 0.00 30.48 3.20
2564 2752 3.317993 CCTTTCCGAAAGCCTTTTTGAGA 59.682 43.478 14.46 0.00 37.18 3.27
2565 2753 3.552890 CCCTTTCCGAAAGCCTTTTTGAG 60.553 47.826 14.46 0.00 37.18 3.02
2566 2754 2.364002 CCCTTTCCGAAAGCCTTTTTGA 59.636 45.455 14.46 0.00 37.18 2.69
2567 2755 2.364002 TCCCTTTCCGAAAGCCTTTTTG 59.636 45.455 14.46 0.69 37.18 2.44
2568 2756 2.673258 TCCCTTTCCGAAAGCCTTTTT 58.327 42.857 14.46 0.00 37.18 1.94
2569 2757 2.375014 TCCCTTTCCGAAAGCCTTTT 57.625 45.000 14.46 0.00 37.18 2.27
2570 2758 2.375014 TTCCCTTTCCGAAAGCCTTT 57.625 45.000 14.46 0.00 37.18 3.11
2571 2759 2.375014 TTTCCCTTTCCGAAAGCCTT 57.625 45.000 14.46 0.00 37.18 4.35
2572 2760 2.375014 TTTTCCCTTTCCGAAAGCCT 57.625 45.000 14.46 0.00 37.18 4.58
2589 2777 0.537371 CCAGACCGGGAGCACTTTTT 60.537 55.000 6.32 0.00 0.00 1.94
2590 2778 1.073199 CCAGACCGGGAGCACTTTT 59.927 57.895 6.32 0.00 0.00 2.27
2591 2779 2.750350 CCAGACCGGGAGCACTTT 59.250 61.111 6.32 0.00 0.00 2.66
2592 2780 4.021925 GCCAGACCGGGAGCACTT 62.022 66.667 6.32 0.00 34.06 3.16
2596 2784 3.569200 AAAAGGCCAGACCGGGAGC 62.569 63.158 6.32 2.05 46.52 4.70
2597 2785 1.377333 GAAAAGGCCAGACCGGGAG 60.377 63.158 6.32 0.00 46.52 4.30
2598 2786 2.754375 GAAAAGGCCAGACCGGGA 59.246 61.111 6.32 0.00 46.52 5.14
2599 2787 2.746277 CGAAAAGGCCAGACCGGG 60.746 66.667 6.32 0.00 46.52 5.73
2600 2788 2.032071 ACGAAAAGGCCAGACCGG 59.968 61.111 5.01 0.00 46.52 5.28
2601 2789 1.004918 AGACGAAAAGGCCAGACCG 60.005 57.895 5.01 5.74 46.52 4.79
2602 2790 0.034896 TCAGACGAAAAGGCCAGACC 59.965 55.000 5.01 0.00 39.61 3.85
2603 2791 2.100605 ATCAGACGAAAAGGCCAGAC 57.899 50.000 5.01 0.00 0.00 3.51
2604 2792 2.859165 AATCAGACGAAAAGGCCAGA 57.141 45.000 5.01 0.00 0.00 3.86
2605 2793 3.503748 AGAAAATCAGACGAAAAGGCCAG 59.496 43.478 5.01 0.00 0.00 4.85
2606 2794 3.486383 AGAAAATCAGACGAAAAGGCCA 58.514 40.909 5.01 0.00 0.00 5.36
2607 2795 4.505313 AAGAAAATCAGACGAAAAGGCC 57.495 40.909 0.00 0.00 0.00 5.19
2608 2796 5.519722 TCAAAGAAAATCAGACGAAAAGGC 58.480 37.500 0.00 0.00 0.00 4.35
2609 2797 7.487829 TGTTTCAAAGAAAATCAGACGAAAAGG 59.512 33.333 0.00 0.00 0.00 3.11
2610 2798 8.393395 TGTTTCAAAGAAAATCAGACGAAAAG 57.607 30.769 0.00 0.00 0.00 2.27
2611 2799 8.749841 TTGTTTCAAAGAAAATCAGACGAAAA 57.250 26.923 0.00 0.00 0.00 2.29
2612 2800 8.749841 TTTGTTTCAAAGAAAATCAGACGAAA 57.250 26.923 0.00 0.00 0.00 3.46
2613 2801 8.749841 TTTTGTTTCAAAGAAAATCAGACGAA 57.250 26.923 1.13 0.00 29.87 3.85
2614 2802 8.749841 TTTTTGTTTCAAAGAAAATCAGACGA 57.250 26.923 6.05 0.00 34.22 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.