Multiple sequence alignment - TraesCS3B01G254900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G254900 chr3B 100.000 3165 0 0 1 3165 411292437 411295601 0.000000e+00 5845.0
1 TraesCS3B01G254900 chr3D 93.115 2324 92 22 870 3165 309946253 309943970 0.000000e+00 3343.0
2 TraesCS3B01G254900 chr3D 87.610 912 36 17 1 858 309947523 309946635 0.000000e+00 987.0
3 TraesCS3B01G254900 chr3A 90.466 2360 112 34 880 3165 422619134 422621454 0.000000e+00 3007.0
4 TraesCS3B01G254900 chr3A 92.296 649 24 10 215 858 422613902 422614529 0.000000e+00 898.0
5 TraesCS3B01G254900 chr3A 95.918 196 8 0 6 201 422613663 422613858 5.090000e-83 318.0
6 TraesCS3B01G254900 chrUn 100.000 28 0 0 1184 1211 23151161 23151134 6.000000e-03 52.8
7 TraesCS3B01G254900 chr2D 100.000 28 0 0 1184 1211 620153338 620153365 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G254900 chr3B 411292437 411295601 3164 False 5845 5845 100.0000 1 3165 1 chr3B.!!$F1 3164
1 TraesCS3B01G254900 chr3D 309943970 309947523 3553 True 2165 3343 90.3625 1 3165 2 chr3D.!!$R1 3164
2 TraesCS3B01G254900 chr3A 422619134 422621454 2320 False 3007 3007 90.4660 880 3165 1 chr3A.!!$F1 2285
3 TraesCS3B01G254900 chr3A 422613663 422614529 866 False 608 898 94.1070 6 858 2 chr3A.!!$F2 852

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
637 678 0.263468 TCTGGATATCGGGTGGGTGA 59.737 55.0 0.00 0.00 0.00 4.02 F
2023 2482 0.316196 CCATTTCGCTTCGGAATCGC 60.316 55.0 8.96 0.79 32.22 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2113 2577 0.251073 TAGCTTCCTAAACCACCGCC 59.749 55.000 0.0 0.0 0.0 6.13 R
2936 3435 3.108289 CCTCGCACACAGACGCAG 61.108 66.667 0.0 0.0 0.0 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.755628 CGCAGCAGCAGGCCATTT 61.756 61.111 5.01 0.00 46.50 2.32
109 110 8.734386 AGAGCAGATGTTTTACTCTTTTTATGG 58.266 33.333 0.00 0.00 34.06 2.74
111 112 9.247861 AGCAGATGTTTTACTCTTTTTATGGAT 57.752 29.630 0.00 0.00 0.00 3.41
306 342 0.736325 CGAGGACCTTACCGCAGTTG 60.736 60.000 0.00 0.00 34.73 3.16
361 399 4.075682 TCAACTTCAACTTTGTGTCACCA 58.924 39.130 0.00 0.00 0.00 4.17
363 401 2.423538 ACTTCAACTTTGTGTCACCAGC 59.576 45.455 0.00 0.00 0.00 4.85
413 451 6.970761 AGTTATAAACACGAAACGTACATCG 58.029 36.000 14.40 14.40 44.33 3.84
432 470 4.564110 CGGATCGCCCTTTCCCCC 62.564 72.222 0.00 0.00 0.00 5.40
436 474 1.000359 ATCGCCCTTTCCCCCAAAG 60.000 57.895 0.00 0.00 41.30 2.77
437 475 1.506028 ATCGCCCTTTCCCCCAAAGA 61.506 55.000 0.00 0.00 44.02 2.52
438 476 1.678970 CGCCCTTTCCCCCAAAGAG 60.679 63.158 0.00 0.00 44.02 2.85
441 479 1.482365 GCCCTTTCCCCCAAAGAGAAA 60.482 52.381 0.00 0.00 44.02 2.52
442 480 2.529632 CCCTTTCCCCCAAAGAGAAAG 58.470 52.381 5.03 5.03 44.02 2.62
443 481 2.158310 CCCTTTCCCCCAAAGAGAAAGT 60.158 50.000 9.99 0.00 44.02 2.66
444 482 2.893489 CCTTTCCCCCAAAGAGAAAGTG 59.107 50.000 9.99 0.41 44.02 3.16
445 483 3.566351 CTTTCCCCCAAAGAGAAAGTGT 58.434 45.455 0.00 0.00 44.02 3.55
446 484 3.680777 TTCCCCCAAAGAGAAAGTGTT 57.319 42.857 0.00 0.00 0.00 3.32
447 485 4.799715 TTCCCCCAAAGAGAAAGTGTTA 57.200 40.909 0.00 0.00 0.00 2.41
448 486 4.094830 TCCCCCAAAGAGAAAGTGTTAC 57.905 45.455 0.00 0.00 0.00 2.50
491 529 3.724374 AGGATCGAAACGACTGACAAAA 58.276 40.909 0.00 0.00 39.18 2.44
492 530 4.315803 AGGATCGAAACGACTGACAAAAT 58.684 39.130 0.00 0.00 39.18 1.82
627 668 3.607741 CCACATGCATCCTCTGGATATC 58.392 50.000 0.00 0.00 40.98 1.63
637 678 0.263468 TCTGGATATCGGGTGGGTGA 59.737 55.000 0.00 0.00 0.00 4.02
674 716 4.718940 AAAATCCGGGACATTGACAATC 57.281 40.909 0.00 0.00 0.00 2.67
677 719 1.905894 TCCGGGACATTGACAATCTGA 59.094 47.619 0.00 0.00 0.00 3.27
678 720 2.505407 TCCGGGACATTGACAATCTGAT 59.495 45.455 0.00 0.00 0.00 2.90
732 796 5.163754 ACACACACAAAGAAAAGACTAGCAC 60.164 40.000 0.00 0.00 0.00 4.40
867 931 4.887748 TCAGCCTTGAAAACTCTCTACTG 58.112 43.478 0.00 0.00 0.00 2.74
868 932 3.434984 CAGCCTTGAAAACTCTCTACTGC 59.565 47.826 0.00 0.00 0.00 4.40
874 1308 4.776349 TGAAAACTCTCTACTGCAAACCA 58.224 39.130 0.00 0.00 0.00 3.67
881 1315 0.602638 CTACTGCAAACCACGAGCCA 60.603 55.000 0.00 0.00 0.00 4.75
887 1321 1.000274 GCAAACCACGAGCCATTCTTT 60.000 47.619 0.00 0.00 0.00 2.52
888 1322 2.922335 GCAAACCACGAGCCATTCTTTC 60.922 50.000 0.00 0.00 0.00 2.62
891 1325 2.795329 ACCACGAGCCATTCTTTCAAT 58.205 42.857 0.00 0.00 0.00 2.57
892 1326 2.749621 ACCACGAGCCATTCTTTCAATC 59.250 45.455 0.00 0.00 0.00 2.67
894 1328 3.064545 CCACGAGCCATTCTTTCAATCTC 59.935 47.826 0.00 0.00 0.00 2.75
901 1335 4.715896 CCATTCTTTCAATCTCACACACG 58.284 43.478 0.00 0.00 0.00 4.49
931 1365 2.503158 GCGCCCGTTTAAAAGCCG 60.503 61.111 0.00 0.00 0.00 5.52
933 1367 2.126228 GCCCGTTTAAAAGCCGCC 60.126 61.111 0.00 0.00 0.00 6.13
1186 1638 2.807045 CGACCTGTCGTGCTGCTC 60.807 66.667 11.37 0.00 46.99 4.26
1187 1639 2.433318 GACCTGTCGTGCTGCTCC 60.433 66.667 0.00 0.00 0.00 4.70
1188 1640 4.363990 ACCTGTCGTGCTGCTCCG 62.364 66.667 0.00 3.48 0.00 4.63
1863 2315 1.202758 ACTCGTTGGTTGATGAAGCCA 60.203 47.619 0.00 0.00 0.00 4.75
1951 2406 2.261671 CGGAGTGACCCAGGAACG 59.738 66.667 0.00 0.00 34.64 3.95
1955 2410 1.345415 GGAGTGACCCAGGAACGTAAA 59.655 52.381 0.00 0.00 0.00 2.01
1962 2417 1.201414 CCCAGGAACGTAAATTGCACC 59.799 52.381 0.00 0.00 0.00 5.01
1969 2424 4.500035 GGAACGTAAATTGCACCCTCAAAA 60.500 41.667 0.00 0.00 0.00 2.44
2023 2482 0.316196 CCATTTCGCTTCGGAATCGC 60.316 55.000 8.96 0.79 32.22 4.58
2074 2533 2.437200 TTTCGCAAAGGAAGCAATGG 57.563 45.000 0.00 0.00 0.00 3.16
2265 2735 1.531149 CGTGGAGTTGTGCCAGTTTAG 59.469 52.381 0.00 0.00 35.77 1.85
2278 2748 3.925299 GCCAGTTTAGTCCTACTTTCGTC 59.075 47.826 0.00 0.00 0.00 4.20
2283 2753 4.853924 TTAGTCCTACTTTCGTCCGTTT 57.146 40.909 0.00 0.00 0.00 3.60
2339 2817 5.465724 ACAAGAGATTTGTAACACGACCTTC 59.534 40.000 0.00 0.00 0.00 3.46
2422 2900 5.007921 TGAATCATGGTGTATCATTGCTTCG 59.992 40.000 0.00 0.00 0.00 3.79
2440 2918 1.227383 GATTTCCATGGCCCCGTCT 59.773 57.895 6.96 0.00 0.00 4.18
2484 2962 0.699151 CGCACACTTACACGTACGAC 59.301 55.000 24.41 0.00 0.00 4.34
2488 2966 3.302555 CACACTTACACGTACGACATGT 58.697 45.455 24.41 18.08 0.00 3.21
2493 2971 6.074888 ACACTTACACGTACGACATGTTAAAC 60.075 38.462 24.41 0.00 0.00 2.01
2496 2974 5.319232 ACACGTACGACATGTTAAACTTG 57.681 39.130 24.41 7.20 0.00 3.16
2529 3007 1.195900 GTGCAAGAATTTGGCGTACGA 59.804 47.619 21.65 0.00 34.79 3.43
2530 3008 1.195900 TGCAAGAATTTGGCGTACGAC 59.804 47.619 21.65 18.90 34.79 4.34
2534 3012 2.695359 AGAATTTGGCGTACGACATGT 58.305 42.857 27.01 13.97 30.63 3.21
2536 3014 4.247258 AGAATTTGGCGTACGACATGTTA 58.753 39.130 27.01 6.93 30.63 2.41
2537 3015 4.691685 AGAATTTGGCGTACGACATGTTAA 59.308 37.500 27.01 16.80 30.63 2.01
2538 3016 5.179742 AGAATTTGGCGTACGACATGTTAAA 59.820 36.000 27.01 16.38 30.63 1.52
2720 3203 0.597568 CCGGAAATTGCACAAGAGCA 59.402 50.000 0.00 0.00 43.99 4.26
2728 3211 2.566833 TGCACAAGAGCAATGGTAGT 57.433 45.000 0.00 0.00 42.46 2.73
2729 3212 3.694043 TGCACAAGAGCAATGGTAGTA 57.306 42.857 0.00 0.00 42.46 1.82
2730 3213 3.334691 TGCACAAGAGCAATGGTAGTAC 58.665 45.455 0.00 0.00 42.46 2.73
2749 3232 0.813184 CTACGTACGATGTGGGTGGT 59.187 55.000 24.41 0.00 0.00 4.16
2751 3234 1.290955 CGTACGATGTGGGTGGTGT 59.709 57.895 10.44 0.00 0.00 4.16
2846 3338 1.265905 CTTTCGGCTTTGTTTACGGCT 59.734 47.619 0.00 0.00 0.00 5.52
2860 3352 5.766174 TGTTTACGGCTCCTTTGTTTATCTT 59.234 36.000 0.00 0.00 0.00 2.40
2916 3413 6.600882 TCGTTTACTTCCTCCTGTTTATCT 57.399 37.500 0.00 0.00 0.00 1.98
2936 3435 3.097162 GACCCCATCCCCCACCTC 61.097 72.222 0.00 0.00 0.00 3.85
2957 3456 2.355837 GTCTGTGTGCGAGGCGAA 60.356 61.111 0.00 0.00 0.00 4.70
3023 3526 0.621082 CTGAGGAGGAAAAGGGGGTC 59.379 60.000 0.00 0.00 0.00 4.46
3030 3533 0.402887 GGAAAAGGGGGTCGGAAAGA 59.597 55.000 0.00 0.00 0.00 2.52
3031 3534 1.005569 GGAAAAGGGGGTCGGAAAGAT 59.994 52.381 0.00 0.00 0.00 2.40
3061 3564 3.317993 GTCTGACCTTTGCTTGGCTTTAA 59.682 43.478 0.00 0.00 0.00 1.52
3160 3675 0.753262 ATTAGCAGCGAATCCGAGGT 59.247 50.000 0.00 0.00 38.22 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.896660 GTGGAGTGGGCAGCGAAAA 60.897 57.895 0.00 0.00 0.00 2.29
109 110 1.665679 CCACACCGCACATACAAGATC 59.334 52.381 0.00 0.00 0.00 2.75
111 112 0.953471 GCCACACCGCACATACAAGA 60.953 55.000 0.00 0.00 0.00 3.02
115 116 1.674322 AAGGCCACACCGCACATAC 60.674 57.895 5.01 0.00 46.52 2.39
117 118 2.985282 CAAGGCCACACCGCACAT 60.985 61.111 5.01 0.00 46.52 3.21
278 314 2.028385 GGTAAGGTCCTCGCTTTCTTGA 60.028 50.000 0.00 0.00 0.00 3.02
306 342 5.594317 AGGGCACTATCCATACAAAAATGAC 59.406 40.000 0.00 0.00 0.00 3.06
361 399 3.195182 CCTCATGATCGATACTGATGGCT 59.805 47.826 0.00 0.00 0.00 4.75
363 401 3.519579 GCCTCATGATCGATACTGATGG 58.480 50.000 0.00 8.81 0.00 3.51
436 474 9.730420 TTGCAAAAGAATAAGTAACACTTTCTC 57.270 29.630 0.00 0.00 39.51 2.87
437 475 9.736023 CTTGCAAAAGAATAAGTAACACTTTCT 57.264 29.630 0.00 0.00 39.51 2.52
438 476 8.480066 GCTTGCAAAAGAATAAGTAACACTTTC 58.520 33.333 0.00 0.00 39.51 2.62
441 479 6.017440 TCGCTTGCAAAAGAATAAGTAACACT 60.017 34.615 0.00 0.00 0.00 3.55
442 480 6.140110 TCGCTTGCAAAAGAATAAGTAACAC 58.860 36.000 0.00 0.00 0.00 3.32
443 481 6.203915 TCTCGCTTGCAAAAGAATAAGTAACA 59.796 34.615 0.00 0.00 0.00 2.41
444 482 6.599437 TCTCGCTTGCAAAAGAATAAGTAAC 58.401 36.000 0.00 0.00 0.00 2.50
445 483 6.795098 TCTCGCTTGCAAAAGAATAAGTAA 57.205 33.333 0.00 0.00 0.00 2.24
446 484 6.795098 TTCTCGCTTGCAAAAGAATAAGTA 57.205 33.333 12.23 0.00 0.00 2.24
447 485 5.689383 TTCTCGCTTGCAAAAGAATAAGT 57.311 34.783 12.23 0.00 0.00 2.24
448 486 5.570589 CCTTTCTCGCTTGCAAAAGAATAAG 59.429 40.000 15.40 13.84 31.81 1.73
491 529 6.156256 ACTGCGGTTGTGGGATACATATATAT 59.844 38.462 0.00 0.00 39.48 0.86
492 530 5.482526 ACTGCGGTTGTGGGATACATATATA 59.517 40.000 0.00 0.00 39.48 0.86
627 668 1.685765 TCTCATCCTCACCCACCCG 60.686 63.158 0.00 0.00 0.00 5.28
637 678 5.648092 CCGGATTTTACTTTTGTCTCATCCT 59.352 40.000 0.00 0.00 32.86 3.24
674 716 5.911752 AGTAGTTGTGGAGAAGCATATCAG 58.088 41.667 0.00 0.00 0.00 2.90
677 719 5.508153 CGCTAGTAGTTGTGGAGAAGCATAT 60.508 44.000 0.00 0.00 0.00 1.78
678 720 4.202020 CGCTAGTAGTTGTGGAGAAGCATA 60.202 45.833 0.00 0.00 0.00 3.14
858 922 2.600731 CTCGTGGTTTGCAGTAGAGAG 58.399 52.381 0.00 0.00 0.00 3.20
859 923 1.336887 GCTCGTGGTTTGCAGTAGAGA 60.337 52.381 7.53 0.00 0.00 3.10
861 925 0.320421 GGCTCGTGGTTTGCAGTAGA 60.320 55.000 0.00 0.00 0.00 2.59
865 929 0.109597 GAATGGCTCGTGGTTTGCAG 60.110 55.000 0.00 0.00 0.00 4.41
867 931 0.598065 AAGAATGGCTCGTGGTTTGC 59.402 50.000 0.00 0.00 0.00 3.68
868 932 2.293122 TGAAAGAATGGCTCGTGGTTTG 59.707 45.455 0.00 0.00 0.00 2.93
874 1308 3.686726 GTGAGATTGAAAGAATGGCTCGT 59.313 43.478 0.00 0.00 0.00 4.18
881 1315 5.178252 CAGACGTGTGTGAGATTGAAAGAAT 59.822 40.000 4.19 0.00 0.00 2.40
887 1321 1.605457 GGCAGACGTGTGTGAGATTGA 60.605 52.381 14.77 0.00 0.00 2.57
888 1322 0.792640 GGCAGACGTGTGTGAGATTG 59.207 55.000 14.77 0.00 0.00 2.67
891 1325 0.464036 AAAGGCAGACGTGTGTGAGA 59.536 50.000 14.77 0.00 0.00 3.27
892 1326 0.583438 CAAAGGCAGACGTGTGTGAG 59.417 55.000 14.77 0.00 0.00 3.51
894 1328 1.009675 GCAAAGGCAGACGTGTGTG 60.010 57.895 14.77 5.65 40.72 3.82
916 1350 2.126228 GGCGGCTTTTAAACGGGC 60.126 61.111 0.00 0.00 0.00 6.13
933 1367 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
1128 1580 4.261781 CTCGCCGTAGCCGTACCC 62.262 72.222 0.00 0.00 34.57 3.69
1129 1581 4.261781 CCTCGCCGTAGCCGTACC 62.262 72.222 0.00 0.00 34.57 3.34
1434 1886 2.023771 CGAAGCTGAGAGTGCGCAA 61.024 57.895 14.00 0.00 35.28 4.85
1442 1894 2.786495 GGCGGATCCGAAGCTGAGA 61.786 63.158 37.64 0.00 42.83 3.27
1564 2016 3.011517 TCCTGGCTTCCTCCTGGC 61.012 66.667 1.38 0.00 42.86 4.85
1951 2406 4.257267 AGCTTTTGAGGGTGCAATTTAC 57.743 40.909 0.00 0.00 0.00 2.01
1955 2410 5.482006 GAAAATAGCTTTTGAGGGTGCAAT 58.518 37.500 0.00 0.00 34.73 3.56
1962 2417 4.082026 CACTGGGGAAAATAGCTTTTGAGG 60.082 45.833 0.00 0.00 34.73 3.86
1992 2447 1.632422 CGAAATGGTGGCAAAGCATC 58.368 50.000 4.07 0.00 46.29 3.91
2094 2558 3.365969 CGCCCGCTCTTCAAATTTTAACT 60.366 43.478 0.00 0.00 0.00 2.24
2101 2565 2.040544 CACCGCCCGCTCTTCAAAT 61.041 57.895 0.00 0.00 0.00 2.32
2102 2566 2.668212 CACCGCCCGCTCTTCAAA 60.668 61.111 0.00 0.00 0.00 2.69
2112 2576 2.044555 GCTTCCTAAACCACCGCCC 61.045 63.158 0.00 0.00 0.00 6.13
2113 2577 0.251073 TAGCTTCCTAAACCACCGCC 59.749 55.000 0.00 0.00 0.00 6.13
2289 2759 7.752695 ACAAGACGAAAAGATGAATATGGAAC 58.247 34.615 0.00 0.00 0.00 3.62
2294 2765 9.653287 TCTTGTACAAGACGAAAAGATGAATAT 57.347 29.630 30.07 0.00 42.06 1.28
2339 2817 1.000506 AGTGCCTAACTACACACACGG 59.999 52.381 0.00 0.00 37.36 4.94
2422 2900 0.472471 TAGACGGGGCCATGGAAATC 59.528 55.000 18.40 4.86 0.00 2.17
2440 2918 4.092821 GTGCACATATTCAAGCGACAGTTA 59.907 41.667 13.17 0.00 0.00 2.24
2484 2962 3.573967 ACAAGAGGCCCAAGTTTAACATG 59.426 43.478 0.00 0.00 0.00 3.21
2488 2966 1.960689 GCACAAGAGGCCCAAGTTTAA 59.039 47.619 0.00 0.00 0.00 1.52
2493 2971 2.281761 ACGCACAAGAGGCCCAAG 60.282 61.111 0.00 0.00 0.00 3.61
2518 2996 3.808726 AGTTTAACATGTCGTACGCCAAA 59.191 39.130 11.24 0.00 0.00 3.28
2529 3007 6.513393 CGAAAGAGCCAAGAAGTTTAACATGT 60.513 38.462 0.00 0.00 0.00 3.21
2530 3008 5.853282 CGAAAGAGCCAAGAAGTTTAACATG 59.147 40.000 0.00 0.00 0.00 3.21
2534 3012 5.365619 AGACGAAAGAGCCAAGAAGTTTAA 58.634 37.500 0.00 0.00 0.00 1.52
2536 3014 3.809905 AGACGAAAGAGCCAAGAAGTTT 58.190 40.909 0.00 0.00 0.00 2.66
2537 3015 3.394719 GAGACGAAAGAGCCAAGAAGTT 58.605 45.455 0.00 0.00 0.00 2.66
2538 3016 2.608261 CGAGACGAAAGAGCCAAGAAGT 60.608 50.000 0.00 0.00 0.00 3.01
2695 3178 3.381136 TGCAATTTCCGGCCCTGC 61.381 61.111 0.00 3.43 0.00 4.85
2728 3211 2.016318 CCACCCACATCGTACGTAGTA 58.984 52.381 16.05 0.00 45.11 1.82
2730 3213 0.813184 ACCACCCACATCGTACGTAG 59.187 55.000 16.05 11.36 0.00 3.51
2749 3232 1.291184 CGCGCAGATCTTTGTCCACA 61.291 55.000 8.75 0.00 0.00 4.17
2751 3234 1.005037 ACGCGCAGATCTTTGTCCA 60.005 52.632 5.73 0.00 0.00 4.02
2846 3338 5.245531 ACGAGCATGAAGATAAACAAAGGA 58.754 37.500 0.00 0.00 0.00 3.36
2860 3352 3.988379 AAGAAAGCAAAACGAGCATGA 57.012 38.095 0.00 0.00 0.00 3.07
2936 3435 3.108289 CCTCGCACACAGACGCAG 61.108 66.667 0.00 0.00 0.00 5.18
2957 3456 4.048470 GCCCTTTTCCCCCTCGCT 62.048 66.667 0.00 0.00 0.00 4.93
3023 3526 5.701290 AGGTCAGACTAAACAAATCTTTCCG 59.299 40.000 0.00 0.00 0.00 4.30
3030 3533 6.461509 CCAAGCAAAGGTCAGACTAAACAAAT 60.462 38.462 0.00 0.00 0.00 2.32
3031 3534 5.163561 CCAAGCAAAGGTCAGACTAAACAAA 60.164 40.000 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.