Multiple sequence alignment - TraesCS3B01G254500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G254500 chr3B 100.000 5599 0 0 1 5599 410039578 410045176 0.000000e+00 10340.0
1 TraesCS3B01G254500 chr3B 99.390 164 1 0 4149 4312 183601084 183601247 1.180000e-76 298.0
2 TraesCS3B01G254500 chr3D 96.355 4060 82 30 113 4152 310924399 310920386 0.000000e+00 6617.0
3 TraesCS3B01G254500 chr3D 90.293 1329 57 12 4310 5599 310920388 310919093 0.000000e+00 1674.0
4 TraesCS3B01G254500 chr3D 94.798 173 7 2 4151 4322 571465367 571465538 9.250000e-68 268.0
5 TraesCS3B01G254500 chr3D 94.798 173 7 2 4151 4322 579494953 579494782 9.250000e-68 268.0
6 TraesCS3B01G254500 chr3D 94.286 175 8 1 4138 4312 238999403 238999575 3.330000e-67 267.0
7 TraesCS3B01G254500 chr3D 86.875 160 18 3 5231 5389 609352497 609352654 5.760000e-40 176.0
8 TraesCS3B01G254500 chr3A 95.545 3434 86 30 765 4152 421118429 421121841 0.000000e+00 5432.0
9 TraesCS3B01G254500 chr3A 90.327 703 32 10 4367 5063 421121949 421122621 0.000000e+00 889.0
10 TraesCS3B01G254500 chr3A 88.627 510 55 3 102 608 208078775 208078266 7.970000e-173 617.0
11 TraesCS3B01G254500 chr3A 98.305 59 1 0 4310 4368 421121839 421121897 2.760000e-18 104.0
12 TraesCS3B01G254500 chr1D 88.627 510 55 3 102 609 55773921 55773413 7.970000e-173 617.0
13 TraesCS3B01G254500 chr1D 88.077 520 58 4 102 619 127496192 127495675 1.030000e-171 614.0
14 TraesCS3B01G254500 chr1D 85.549 519 71 4 1150 1666 482839897 482839381 1.770000e-149 540.0
15 TraesCS3B01G254500 chr1D 80.206 389 59 15 2967 3347 482838585 482838207 5.530000e-70 276.0
16 TraesCS3B01G254500 chr1D 81.602 337 44 12 3676 3999 482837893 482837562 4.300000e-66 263.0
17 TraesCS3B01G254500 chr1D 86.161 224 21 3 5374 5596 455542542 455542756 3.370000e-57 233.0
18 TraesCS3B01G254500 chr1D 79.078 282 17 11 5128 5378 455534761 455535031 7.510000e-34 156.0
19 TraesCS3B01G254500 chr1D 90.000 110 10 1 5125 5233 455648851 455648960 2.100000e-29 141.0
20 TraesCS3B01G254500 chr1D 92.647 68 5 0 2979 3046 243701831 243701764 1.280000e-16 99.0
21 TraesCS3B01G254500 chr6D 88.350 515 57 3 102 614 128895737 128896250 2.870000e-172 616.0
22 TraesCS3B01G254500 chr6D 93.820 178 10 1 4138 4315 406204907 406204731 3.330000e-67 267.0
23 TraesCS3B01G254500 chr6D 92.647 68 5 0 2979 3046 415303730 415303663 1.280000e-16 99.0
24 TraesCS3B01G254500 chr6D 88.235 68 8 0 2979 3046 441369959 441369892 1.290000e-11 82.4
25 TraesCS3B01G254500 chr4D 88.109 513 59 2 102 612 341391285 341390773 4.800000e-170 608.0
26 TraesCS3B01G254500 chr6A 87.984 516 58 4 102 614 163136673 163137187 1.730000e-169 606.0
27 TraesCS3B01G254500 chr6A 96.262 107 3 1 1 106 56059526 56059420 2.070000e-39 174.0
28 TraesCS3B01G254500 chr7B 88.063 511 59 2 102 610 530611808 530612318 6.200000e-169 604.0
29 TraesCS3B01G254500 chr7B 81.331 541 62 16 5088 5597 558367202 558367734 2.430000e-108 403.0
30 TraesCS3B01G254500 chr7B 96.407 167 5 1 4148 4313 74658159 74657993 1.990000e-69 274.0
31 TraesCS3B01G254500 chr5D 88.063 511 59 2 102 610 421572362 421572872 6.200000e-169 604.0
32 TraesCS3B01G254500 chr5D 86.000 550 42 4 5065 5599 4340095 4340624 1.760000e-154 556.0
33 TraesCS3B01G254500 chr5D 83.400 500 46 15 5127 5599 468323099 468322610 4.010000e-116 429.0
34 TraesCS3B01G254500 chr5D 96.226 106 4 0 1 106 92007106 92007211 2.070000e-39 174.0
35 TraesCS3B01G254500 chr5D 96.262 107 3 1 1 106 258224672 258224778 2.070000e-39 174.0
36 TraesCS3B01G254500 chr5A 88.340 506 56 3 102 605 705097445 705096941 6.200000e-169 604.0
37 TraesCS3B01G254500 chr1B 86.127 519 68 4 1150 1666 671202721 671202205 1.760000e-154 556.0
38 TraesCS3B01G254500 chr1B 80.748 535 77 8 5072 5590 511409263 511408739 1.460000e-105 394.0
39 TraesCS3B01G254500 chr1B 81.009 337 46 13 3676 3999 671200688 671200357 9.310000e-63 252.0
40 TraesCS3B01G254500 chr1B 95.370 108 3 2 1 106 45282964 45282857 2.680000e-38 171.0
41 TraesCS3B01G254500 chr1A 85.448 536 75 3 1147 1681 579296190 579296723 6.340000e-154 555.0
42 TraesCS3B01G254500 chr1A 85.070 355 34 12 5247 5599 543410763 543410426 1.490000e-90 344.0
43 TraesCS3B01G254500 chr1A 81.009 337 46 14 3676 3999 579298168 579298499 9.310000e-63 252.0
44 TraesCS3B01G254500 chr7D 82.601 546 54 23 5080 5594 163667548 163667013 1.430000e-120 444.0
45 TraesCS3B01G254500 chr7D 82.124 565 47 16 5065 5597 459753775 459754317 8.610000e-118 435.0
46 TraesCS3B01G254500 chr7D 96.226 106 3 1 1 105 34676049 34675944 7.460000e-39 172.0
47 TraesCS3B01G254500 chr7D 95.370 108 4 1 1 107 427365631 427365524 2.680000e-38 171.0
48 TraesCS3B01G254500 chr2D 81.753 559 55 14 5065 5597 325508727 325508190 1.860000e-114 424.0
49 TraesCS3B01G254500 chr2D 80.071 567 58 20 5065 5599 325468815 325468272 2.460000e-98 370.0
50 TraesCS3B01G254500 chr2A 93.889 180 8 3 4138 4316 460904176 460903999 9.250000e-68 268.0
51 TraesCS3B01G254500 chr2A 96.262 107 3 1 1 106 693450371 693450477 2.070000e-39 174.0
52 TraesCS3B01G254500 chr2A 92.958 71 4 1 2979 3048 349734988 349735058 9.920000e-18 102.0
53 TraesCS3B01G254500 chr4B 92.935 184 11 2 4143 4325 660120768 660120586 3.330000e-67 267.0
54 TraesCS3B01G254500 chr4B 95.370 108 3 2 1 106 612516316 612516209 2.680000e-38 171.0
55 TraesCS3B01G254500 chr6B 90.863 197 14 4 4124 4319 131720938 131720745 1.550000e-65 261.0
56 TraesCS3B01G254500 chr4A 89.796 147 15 0 5087 5233 535041665 535041811 7.400000e-44 189.0
57 TraesCS3B01G254500 chr2B 95.370 108 3 2 1 106 418214229 418214122 2.680000e-38 171.0
58 TraesCS3B01G254500 chrUn 82.883 111 13 6 5095 5199 374468937 374468827 1.660000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G254500 chr3B 410039578 410045176 5598 False 10340.000000 10340 100.000000 1 5599 1 chr3B.!!$F2 5598
1 TraesCS3B01G254500 chr3D 310919093 310924399 5306 True 4145.500000 6617 93.324000 113 5599 2 chr3D.!!$R2 5486
2 TraesCS3B01G254500 chr3A 421118429 421122621 4192 False 2141.666667 5432 94.725667 765 5063 3 chr3A.!!$F1 4298
3 TraesCS3B01G254500 chr3A 208078266 208078775 509 True 617.000000 617 88.627000 102 608 1 chr3A.!!$R1 506
4 TraesCS3B01G254500 chr1D 55773413 55773921 508 True 617.000000 617 88.627000 102 609 1 chr1D.!!$R1 507
5 TraesCS3B01G254500 chr1D 127495675 127496192 517 True 614.000000 614 88.077000 102 619 1 chr1D.!!$R2 517
6 TraesCS3B01G254500 chr1D 482837562 482839897 2335 True 359.666667 540 82.452333 1150 3999 3 chr1D.!!$R4 2849
7 TraesCS3B01G254500 chr6D 128895737 128896250 513 False 616.000000 616 88.350000 102 614 1 chr6D.!!$F1 512
8 TraesCS3B01G254500 chr4D 341390773 341391285 512 True 608.000000 608 88.109000 102 612 1 chr4D.!!$R1 510
9 TraesCS3B01G254500 chr6A 163136673 163137187 514 False 606.000000 606 87.984000 102 614 1 chr6A.!!$F1 512
10 TraesCS3B01G254500 chr7B 530611808 530612318 510 False 604.000000 604 88.063000 102 610 1 chr7B.!!$F1 508
11 TraesCS3B01G254500 chr7B 558367202 558367734 532 False 403.000000 403 81.331000 5088 5597 1 chr7B.!!$F2 509
12 TraesCS3B01G254500 chr5D 421572362 421572872 510 False 604.000000 604 88.063000 102 610 1 chr5D.!!$F4 508
13 TraesCS3B01G254500 chr5D 4340095 4340624 529 False 556.000000 556 86.000000 5065 5599 1 chr5D.!!$F1 534
14 TraesCS3B01G254500 chr5A 705096941 705097445 504 True 604.000000 604 88.340000 102 605 1 chr5A.!!$R1 503
15 TraesCS3B01G254500 chr1B 671200357 671202721 2364 True 404.000000 556 83.568000 1150 3999 2 chr1B.!!$R3 2849
16 TraesCS3B01G254500 chr1B 511408739 511409263 524 True 394.000000 394 80.748000 5072 5590 1 chr1B.!!$R2 518
17 TraesCS3B01G254500 chr1A 579296190 579298499 2309 False 403.500000 555 83.228500 1147 3999 2 chr1A.!!$F1 2852
18 TraesCS3B01G254500 chr7D 163667013 163667548 535 True 444.000000 444 82.601000 5080 5594 1 chr7D.!!$R2 514
19 TraesCS3B01G254500 chr7D 459753775 459754317 542 False 435.000000 435 82.124000 5065 5597 1 chr7D.!!$F1 532
20 TraesCS3B01G254500 chr2D 325508190 325508727 537 True 424.000000 424 81.753000 5065 5597 1 chr2D.!!$R2 532
21 TraesCS3B01G254500 chr2D 325468272 325468815 543 True 370.000000 370 80.071000 5065 5599 1 chr2D.!!$R1 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.035343 GTCCCCTGCCTTCTGTTACC 60.035 60.000 0.00 0.00 0.0 2.85 F
73 74 0.036671 CACAGTTCGGAACCCCCTAC 60.037 60.000 16.84 0.00 0.0 3.18 F
81 82 0.105607 GGAACCCCCTACCGAGATCT 60.106 60.000 0.00 0.00 0.0 2.75 F
846 851 0.253327 AACTCGCTTCCCTTGATCCC 59.747 55.000 0.00 0.00 0.0 3.85 F
2159 2181 0.388659 TCACATGCAAACTGTTGGCC 59.611 50.000 16.85 0.00 35.1 5.36 F
2160 2182 0.940519 CACATGCAAACTGTTGGCCG 60.941 55.000 16.85 10.57 35.1 6.13 F
3124 3317 1.771854 TGTTTACCTTCCCTGCTGACA 59.228 47.619 0.00 0.00 0.0 3.58 F
4164 4541 1.136500 GTGATGTACTCCCTCCGTTCC 59.864 57.143 0.00 0.00 0.0 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1896 1916 0.039035 TCCCCATACCAACAACAGCC 59.961 55.000 0.00 0.0 0.00 4.85 R
2015 2035 4.096732 AGAAACAACACTGTGCTCAAAC 57.903 40.909 7.90 0.0 35.37 2.93 R
2108 2129 5.352293 GGTTTCGTCGGATAATTTTAGGTGT 59.648 40.000 0.00 0.0 0.00 4.16 R
2331 2363 0.176680 CTCCATAGTGCCGCTTCAGT 59.823 55.000 0.00 0.0 0.00 3.41 R
3105 3298 2.561478 TGTCAGCAGGGAAGGTAAAC 57.439 50.000 0.00 0.0 0.00 2.01 R
4149 4526 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.0 0.00 2.73 R
4466 4896 2.093306 TTAGCACCGTGATGAACTGG 57.907 50.000 1.65 0.0 0.00 4.00 R
5335 5850 0.524862 TTAGACGAGAAGGGCACGAC 59.475 55.000 0.00 0.0 34.56 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.774687 GAACCTGGGTAAACATCGTGT 58.225 47.619 0.00 0.00 0.00 4.49
21 22 2.467566 ACCTGGGTAAACATCGTGTC 57.532 50.000 0.00 0.00 0.00 3.67
22 23 1.002773 ACCTGGGTAAACATCGTGTCC 59.997 52.381 0.00 0.00 0.00 4.02
23 24 1.677820 CCTGGGTAAACATCGTGTCCC 60.678 57.143 0.00 0.00 35.85 4.46
24 25 0.325602 TGGGTAAACATCGTGTCCCC 59.674 55.000 9.39 10.06 34.88 4.81
25 26 0.616891 GGGTAAACATCGTGTCCCCT 59.383 55.000 10.47 0.00 32.86 4.79
26 27 1.677820 GGGTAAACATCGTGTCCCCTG 60.678 57.143 10.47 0.00 32.86 4.45
27 28 1.084289 GTAAACATCGTGTCCCCTGC 58.916 55.000 0.00 0.00 0.00 4.85
28 29 0.035820 TAAACATCGTGTCCCCTGCC 60.036 55.000 0.00 0.00 0.00 4.85
29 30 1.779061 AAACATCGTGTCCCCTGCCT 61.779 55.000 0.00 0.00 0.00 4.75
30 31 1.779061 AACATCGTGTCCCCTGCCTT 61.779 55.000 0.00 0.00 0.00 4.35
31 32 1.450312 CATCGTGTCCCCTGCCTTC 60.450 63.158 0.00 0.00 0.00 3.46
32 33 1.613630 ATCGTGTCCCCTGCCTTCT 60.614 57.895 0.00 0.00 0.00 2.85
33 34 1.903877 ATCGTGTCCCCTGCCTTCTG 61.904 60.000 0.00 0.00 0.00 3.02
34 35 2.883828 CGTGTCCCCTGCCTTCTGT 61.884 63.158 0.00 0.00 0.00 3.41
35 36 1.456287 GTGTCCCCTGCCTTCTGTT 59.544 57.895 0.00 0.00 0.00 3.16
36 37 0.690762 GTGTCCCCTGCCTTCTGTTA 59.309 55.000 0.00 0.00 0.00 2.41
37 38 0.690762 TGTCCCCTGCCTTCTGTTAC 59.309 55.000 0.00 0.00 0.00 2.50
38 39 0.035343 GTCCCCTGCCTTCTGTTACC 60.035 60.000 0.00 0.00 0.00 2.85
39 40 0.178873 TCCCCTGCCTTCTGTTACCT 60.179 55.000 0.00 0.00 0.00 3.08
40 41 0.698818 CCCCTGCCTTCTGTTACCTT 59.301 55.000 0.00 0.00 0.00 3.50
41 42 1.340114 CCCCTGCCTTCTGTTACCTTC 60.340 57.143 0.00 0.00 0.00 3.46
42 43 1.676014 CCCTGCCTTCTGTTACCTTCG 60.676 57.143 0.00 0.00 0.00 3.79
43 44 1.275291 CCTGCCTTCTGTTACCTTCGA 59.725 52.381 0.00 0.00 0.00 3.71
44 45 2.093447 CCTGCCTTCTGTTACCTTCGAT 60.093 50.000 0.00 0.00 0.00 3.59
45 46 3.190874 CTGCCTTCTGTTACCTTCGATC 58.809 50.000 0.00 0.00 0.00 3.69
46 47 2.093658 TGCCTTCTGTTACCTTCGATCC 60.094 50.000 0.00 0.00 0.00 3.36
47 48 2.168728 GCCTTCTGTTACCTTCGATCCT 59.831 50.000 0.00 0.00 0.00 3.24
48 49 3.369576 GCCTTCTGTTACCTTCGATCCTT 60.370 47.826 0.00 0.00 0.00 3.36
49 50 4.142004 GCCTTCTGTTACCTTCGATCCTTA 60.142 45.833 0.00 0.00 0.00 2.69
50 51 5.593010 CCTTCTGTTACCTTCGATCCTTAG 58.407 45.833 0.00 0.00 0.00 2.18
51 52 5.360144 CCTTCTGTTACCTTCGATCCTTAGA 59.640 44.000 0.00 0.00 0.00 2.10
52 53 5.831702 TCTGTTACCTTCGATCCTTAGAC 57.168 43.478 0.00 0.00 0.00 2.59
53 54 4.334759 TCTGTTACCTTCGATCCTTAGACG 59.665 45.833 0.00 0.00 0.00 4.18
54 55 3.181493 TGTTACCTTCGATCCTTAGACGC 60.181 47.826 0.00 0.00 0.00 5.19
55 56 1.471119 ACCTTCGATCCTTAGACGCA 58.529 50.000 0.00 0.00 0.00 5.24
56 57 1.134560 ACCTTCGATCCTTAGACGCAC 59.865 52.381 0.00 0.00 0.00 5.34
57 58 1.134367 CCTTCGATCCTTAGACGCACA 59.866 52.381 0.00 0.00 0.00 4.57
58 59 2.455032 CTTCGATCCTTAGACGCACAG 58.545 52.381 0.00 0.00 0.00 3.66
59 60 1.460504 TCGATCCTTAGACGCACAGT 58.539 50.000 0.00 0.00 0.00 3.55
60 61 1.816835 TCGATCCTTAGACGCACAGTT 59.183 47.619 0.00 0.00 0.00 3.16
61 62 2.159421 TCGATCCTTAGACGCACAGTTC 60.159 50.000 0.00 0.00 0.00 3.01
62 63 2.186076 GATCCTTAGACGCACAGTTCG 58.814 52.381 0.00 0.00 0.00 3.95
63 64 0.242825 TCCTTAGACGCACAGTTCGG 59.757 55.000 0.00 0.00 0.00 4.30
64 65 0.242825 CCTTAGACGCACAGTTCGGA 59.757 55.000 0.00 0.00 0.00 4.55
65 66 1.336517 CCTTAGACGCACAGTTCGGAA 60.337 52.381 0.00 0.00 0.00 4.30
66 67 1.719780 CTTAGACGCACAGTTCGGAAC 59.280 52.381 12.91 12.91 0.00 3.62
67 68 0.038892 TAGACGCACAGTTCGGAACC 60.039 55.000 16.84 1.35 0.00 3.62
68 69 2.280592 ACGCACAGTTCGGAACCC 60.281 61.111 16.84 3.33 0.00 4.11
69 70 3.047877 CGCACAGTTCGGAACCCC 61.048 66.667 16.84 3.00 0.00 4.95
70 71 2.671963 GCACAGTTCGGAACCCCC 60.672 66.667 16.84 0.60 0.00 5.40
71 72 3.157680 CACAGTTCGGAACCCCCT 58.842 61.111 16.84 0.00 0.00 4.79
72 73 1.833787 GCACAGTTCGGAACCCCCTA 61.834 60.000 16.84 0.00 0.00 3.53
73 74 0.036671 CACAGTTCGGAACCCCCTAC 60.037 60.000 16.84 0.00 0.00 3.18
74 75 1.196766 ACAGTTCGGAACCCCCTACC 61.197 60.000 16.84 0.00 0.00 3.18
75 76 1.986210 AGTTCGGAACCCCCTACCG 60.986 63.158 16.84 0.00 46.71 4.02
79 80 4.722389 GGAACCCCCTACCGAGAT 57.278 61.111 0.00 0.00 0.00 2.75
80 81 2.438730 GGAACCCCCTACCGAGATC 58.561 63.158 0.00 0.00 0.00 2.75
81 82 0.105607 GGAACCCCCTACCGAGATCT 60.106 60.000 0.00 0.00 0.00 2.75
82 83 1.041437 GAACCCCCTACCGAGATCTG 58.959 60.000 0.00 0.00 0.00 2.90
83 84 1.049289 AACCCCCTACCGAGATCTGC 61.049 60.000 0.00 0.00 0.00 4.26
84 85 2.210711 CCCCCTACCGAGATCTGCC 61.211 68.421 0.00 0.00 0.00 4.85
85 86 2.565645 CCCCTACCGAGATCTGCCG 61.566 68.421 0.00 0.00 0.00 5.69
90 91 4.617875 CCGAGATCTGCCGGTTTT 57.382 55.556 13.39 0.00 40.78 2.43
91 92 2.089854 CCGAGATCTGCCGGTTTTG 58.910 57.895 13.39 0.00 40.78 2.44
92 93 0.391130 CCGAGATCTGCCGGTTTTGA 60.391 55.000 13.39 0.00 40.78 2.69
93 94 0.721718 CGAGATCTGCCGGTTTTGAC 59.278 55.000 0.00 0.00 0.00 3.18
94 95 1.808411 GAGATCTGCCGGTTTTGACA 58.192 50.000 0.00 0.00 0.00 3.58
95 96 1.464997 GAGATCTGCCGGTTTTGACAC 59.535 52.381 0.00 0.00 0.00 3.67
96 97 0.521735 GATCTGCCGGTTTTGACACC 59.478 55.000 1.90 0.00 0.00 4.16
117 118 4.250305 AGTGGTTCCGCGGTGCTT 62.250 61.111 27.15 4.36 0.00 3.91
359 361 3.058160 GCGGTGGCAATGCTCTGT 61.058 61.111 4.82 0.00 39.62 3.41
400 402 2.177531 CGCATTGGAGCACACAGC 59.822 61.111 0.00 0.00 46.19 4.40
425 428 5.985530 TCGTCATATGCGATTTCATCTCTTT 59.014 36.000 15.22 0.00 33.09 2.52
478 482 3.418995 TGCTCTTATAGTACTAGGGGCG 58.581 50.000 8.85 0.00 0.00 6.13
537 541 1.376037 TGTGCGTGTGTTGTGGTGA 60.376 52.632 0.00 0.00 0.00 4.02
561 566 2.227194 GGTTTGTACCTGAGTTGTGGG 58.773 52.381 0.00 0.00 41.53 4.61
626 631 8.827177 TTCGATAAAGATATTATGGTGGTCAC 57.173 34.615 0.00 0.00 0.00 3.67
708 713 9.645059 CTTCGTCATCATATACACCTTAATGAT 57.355 33.333 0.00 0.00 39.14 2.45
724 729 2.268796 TGATTGGGAGGGTCAGATCA 57.731 50.000 0.00 0.00 0.00 2.92
725 730 2.780414 TGATTGGGAGGGTCAGATCAT 58.220 47.619 0.00 0.00 0.00 2.45
803 808 2.737376 GGCTCACGGACGGACAAC 60.737 66.667 0.00 0.00 0.00 3.32
804 809 2.737376 GCTCACGGACGGACAACC 60.737 66.667 0.00 0.00 0.00 3.77
805 810 3.048602 CTCACGGACGGACAACCT 58.951 61.111 0.00 0.00 0.00 3.50
806 811 1.080705 CTCACGGACGGACAACCTC 60.081 63.158 0.00 0.00 0.00 3.85
807 812 2.048503 CACGGACGGACAACCTCC 60.049 66.667 0.00 0.00 35.33 4.30
841 846 2.680913 CGGCAACTCGCTTCCCTTG 61.681 63.158 0.00 0.00 41.91 3.61
842 847 1.302511 GGCAACTCGCTTCCCTTGA 60.303 57.895 0.00 0.00 41.91 3.02
843 848 0.678048 GGCAACTCGCTTCCCTTGAT 60.678 55.000 0.00 0.00 41.91 2.57
844 849 0.729690 GCAACTCGCTTCCCTTGATC 59.270 55.000 0.00 0.00 37.77 2.92
845 850 1.373570 CAACTCGCTTCCCTTGATCC 58.626 55.000 0.00 0.00 0.00 3.36
846 851 0.253327 AACTCGCTTCCCTTGATCCC 59.747 55.000 0.00 0.00 0.00 3.85
847 852 0.618968 ACTCGCTTCCCTTGATCCCT 60.619 55.000 0.00 0.00 0.00 4.20
848 853 0.543749 CTCGCTTCCCTTGATCCCTT 59.456 55.000 0.00 0.00 0.00 3.95
2007 2027 6.044046 TGAAATGGCATTGTAGATTTGCATC 58.956 36.000 14.47 3.46 38.12 3.91
2015 2035 7.168637 GGCATTGTAGATTTGCATCATTTACAG 59.831 37.037 8.78 2.94 38.12 2.74
2107 2128 1.394917 GCCTGCACGTGTATCAGAAAG 59.605 52.381 18.38 4.96 0.00 2.62
2108 2129 2.930887 GCCTGCACGTGTATCAGAAAGA 60.931 50.000 18.38 0.00 0.00 2.52
2158 2180 2.129607 CTTCACATGCAAACTGTTGGC 58.870 47.619 12.99 12.99 35.10 4.52
2159 2181 0.388659 TCACATGCAAACTGTTGGCC 59.611 50.000 16.85 0.00 35.10 5.36
2160 2182 0.940519 CACATGCAAACTGTTGGCCG 60.941 55.000 16.85 10.57 35.10 6.13
2216 2248 9.640963 TTTATCACTAGAAAGTAGAAAGTGCTC 57.359 33.333 0.00 0.00 37.94 4.26
2331 2363 4.500887 GCGTATTATGTTGCTCCTGAGGTA 60.501 45.833 0.00 0.00 0.00 3.08
2486 2579 9.612620 GCTTTTTATTTATCTGCTAATACGCAT 57.387 29.630 0.00 0.00 39.52 4.73
2734 2852 4.807304 GCATGGCATTCTTATTTGTGAAGG 59.193 41.667 0.00 0.00 0.00 3.46
2845 2964 8.608844 AGCACTGCTAATAATGTTATACTTCC 57.391 34.615 0.21 0.00 36.99 3.46
2903 3023 6.152154 TCTCGTTGTTGAAGACCTGTCATATA 59.848 38.462 0.00 0.00 0.00 0.86
3124 3317 1.771854 TGTTTACCTTCCCTGCTGACA 59.228 47.619 0.00 0.00 0.00 3.58
3370 3563 5.046231 TGTTTGTACTCCACAGGCATATACA 60.046 40.000 0.00 0.00 38.72 2.29
3466 3799 4.023107 GGAAGTTTGGAAGCAACTACCTTC 60.023 45.833 0.00 0.00 38.33 3.46
3611 3948 7.465245 GCATTTAAAAGTGCTTTGCAACTGTTA 60.465 33.333 0.00 0.00 41.47 2.41
3645 3997 6.292919 CCGTAGTTCTAGCATAAGCCATTTTC 60.293 42.308 0.00 0.00 43.56 2.29
3866 4230 6.393990 AGTTGTGACTGTTTGCATTGTTTTA 58.606 32.000 0.00 0.00 33.99 1.52
4056 4420 4.739793 TCCACTTGTTCAGGGATGAAAAT 58.260 39.130 0.00 0.00 0.00 1.82
4063 4427 7.658575 ACTTGTTCAGGGATGAAAATTTTGATG 59.341 33.333 8.47 0.00 0.00 3.07
4129 4506 5.294306 TCATCGCTTTTGCTAGGATTTACTG 59.706 40.000 0.00 0.00 44.80 2.74
4160 4537 7.110810 TCTATATTAGTGATGTACTCCCTCCG 58.889 42.308 0.00 0.00 40.89 4.63
4161 4538 3.377253 TTAGTGATGTACTCCCTCCGT 57.623 47.619 0.00 0.00 40.89 4.69
4162 4539 2.233305 AGTGATGTACTCCCTCCGTT 57.767 50.000 0.00 0.00 33.17 4.44
4163 4540 2.100989 AGTGATGTACTCCCTCCGTTC 58.899 52.381 0.00 0.00 33.17 3.95
4164 4541 1.136500 GTGATGTACTCCCTCCGTTCC 59.864 57.143 0.00 0.00 0.00 3.62
4165 4542 1.272816 TGATGTACTCCCTCCGTTCCA 60.273 52.381 0.00 0.00 0.00 3.53
4166 4543 1.829222 GATGTACTCCCTCCGTTCCAA 59.171 52.381 0.00 0.00 0.00 3.53
4167 4544 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
4168 4545 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
4169 4546 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
4170 4547 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
4171 4548 4.472108 TGTACTCCCTCCGTTCCAAAATAT 59.528 41.667 0.00 0.00 0.00 1.28
4172 4549 4.152284 ACTCCCTCCGTTCCAAAATATC 57.848 45.455 0.00 0.00 0.00 1.63
4173 4550 3.521937 ACTCCCTCCGTTCCAAAATATCA 59.478 43.478 0.00 0.00 0.00 2.15
4174 4551 4.130118 CTCCCTCCGTTCCAAAATATCAG 58.870 47.826 0.00 0.00 0.00 2.90
4175 4552 3.521937 TCCCTCCGTTCCAAAATATCAGT 59.478 43.478 0.00 0.00 0.00 3.41
4176 4553 3.877508 CCCTCCGTTCCAAAATATCAGTC 59.122 47.826 0.00 0.00 0.00 3.51
4177 4554 4.384208 CCCTCCGTTCCAAAATATCAGTCT 60.384 45.833 0.00 0.00 0.00 3.24
4178 4555 5.186198 CCTCCGTTCCAAAATATCAGTCTT 58.814 41.667 0.00 0.00 0.00 3.01
4179 4556 5.648092 CCTCCGTTCCAAAATATCAGTCTTT 59.352 40.000 0.00 0.00 0.00 2.52
4180 4557 6.403636 CCTCCGTTCCAAAATATCAGTCTTTG 60.404 42.308 0.00 0.00 0.00 2.77
4181 4558 6.001460 TCCGTTCCAAAATATCAGTCTTTGT 58.999 36.000 0.00 0.00 0.00 2.83
4182 4559 7.162761 TCCGTTCCAAAATATCAGTCTTTGTA 58.837 34.615 0.00 0.00 0.00 2.41
4183 4560 7.333423 TCCGTTCCAAAATATCAGTCTTTGTAG 59.667 37.037 0.00 0.00 0.00 2.74
4184 4561 7.333423 CCGTTCCAAAATATCAGTCTTTGTAGA 59.667 37.037 0.00 0.00 0.00 2.59
4185 4562 8.383619 CGTTCCAAAATATCAGTCTTTGTAGAG 58.616 37.037 0.00 0.00 0.00 2.43
4186 4563 9.436957 GTTCCAAAATATCAGTCTTTGTAGAGA 57.563 33.333 0.00 0.00 0.00 3.10
4192 4569 9.606631 AAATATCAGTCTTTGTAGAGATTCCAC 57.393 33.333 0.00 0.00 0.00 4.02
4193 4570 6.865834 ATCAGTCTTTGTAGAGATTCCACT 57.134 37.500 0.00 0.00 0.00 4.00
4194 4571 7.962995 ATCAGTCTTTGTAGAGATTCCACTA 57.037 36.000 0.00 0.00 0.00 2.74
4195 4572 7.962995 TCAGTCTTTGTAGAGATTCCACTAT 57.037 36.000 0.00 0.00 0.00 2.12
4196 4573 7.776107 TCAGTCTTTGTAGAGATTCCACTATG 58.224 38.462 0.00 0.00 0.00 2.23
4197 4574 7.615757 TCAGTCTTTGTAGAGATTCCACTATGA 59.384 37.037 0.00 0.00 0.00 2.15
4198 4575 8.253810 CAGTCTTTGTAGAGATTCCACTATGAA 58.746 37.037 0.00 0.00 0.00 2.57
4199 4576 8.254508 AGTCTTTGTAGAGATTCCACTATGAAC 58.745 37.037 0.00 0.00 0.00 3.18
4200 4577 7.492994 GTCTTTGTAGAGATTCCACTATGAACC 59.507 40.741 0.00 0.00 0.00 3.62
4201 4578 6.867519 TTGTAGAGATTCCACTATGAACCA 57.132 37.500 0.00 0.00 0.00 3.67
4202 4579 6.222038 TGTAGAGATTCCACTATGAACCAC 57.778 41.667 0.00 0.00 0.00 4.16
4203 4580 5.719563 TGTAGAGATTCCACTATGAACCACA 59.280 40.000 0.00 0.00 0.00 4.17
4204 4581 5.965033 AGAGATTCCACTATGAACCACAT 57.035 39.130 0.00 0.00 42.39 3.21
4205 4582 7.563556 TGTAGAGATTCCACTATGAACCACATA 59.436 37.037 0.00 0.00 40.07 2.29
4206 4583 6.821388 AGAGATTCCACTATGAACCACATAC 58.179 40.000 0.00 0.00 40.07 2.39
4207 4584 5.601662 AGATTCCACTATGAACCACATACG 58.398 41.667 0.00 0.00 40.07 3.06
4208 4585 3.812156 TCCACTATGAACCACATACGG 57.188 47.619 0.00 0.00 40.07 4.02
4209 4586 3.367321 TCCACTATGAACCACATACGGA 58.633 45.455 0.00 0.00 40.07 4.69
4210 4587 3.964688 TCCACTATGAACCACATACGGAT 59.035 43.478 0.00 0.00 40.07 4.18
4211 4588 4.058124 CCACTATGAACCACATACGGATG 58.942 47.826 5.94 5.94 40.07 3.51
4213 4590 5.221362 CCACTATGAACCACATACGGATGTA 60.221 44.000 14.23 0.00 44.82 2.29
4214 4591 6.455647 CACTATGAACCACATACGGATGTAT 58.544 40.000 14.23 5.54 44.82 2.29
4215 4592 7.309560 CCACTATGAACCACATACGGATGTATA 60.310 40.741 14.23 6.48 44.82 1.47
4216 4593 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
4217 4594 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
4218 4595 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
4219 4596 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
4220 4597 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
4221 4598 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
4222 4599 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
4223 4600 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
4224 4601 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
4225 4602 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
4226 4603 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
4227 4604 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
4231 4608 9.809096 ACGGATGTATATAGATGCATTTTAGAG 57.191 33.333 11.19 0.00 38.38 2.43
4232 4609 9.809096 CGGATGTATATAGATGCATTTTAGAGT 57.191 33.333 11.19 0.00 38.38 3.24
4242 4619 8.430801 AGATGCATTTTAGAGTGTAGATTCAC 57.569 34.615 0.00 0.00 38.46 3.18
4254 4631 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
4255 4632 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
4256 4633 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
4257 4634 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
4258 4635 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
4259 4636 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
4260 4637 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
4261 4638 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
4262 4639 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
4263 4640 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
4264 4641 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
4265 4642 5.581085 ACTCATTTTGCTTCGTATGTAGTCC 59.419 40.000 0.00 0.00 0.00 3.85
4266 4643 5.483811 TCATTTTGCTTCGTATGTAGTCCA 58.516 37.500 0.00 0.00 0.00 4.02
4267 4644 6.112734 TCATTTTGCTTCGTATGTAGTCCAT 58.887 36.000 0.00 0.00 37.58 3.41
4268 4645 7.269316 TCATTTTGCTTCGTATGTAGTCCATA 58.731 34.615 0.00 0.00 34.86 2.74
4269 4646 7.438160 TCATTTTGCTTCGTATGTAGTCCATAG 59.562 37.037 0.00 0.00 36.71 2.23
4270 4647 5.847111 TTGCTTCGTATGTAGTCCATAGT 57.153 39.130 0.00 0.00 36.71 2.12
4271 4648 6.947644 TTGCTTCGTATGTAGTCCATAGTA 57.052 37.500 0.00 0.00 36.71 1.82
4272 4649 6.555812 TGCTTCGTATGTAGTCCATAGTAG 57.444 41.667 0.00 0.00 36.71 2.57
4273 4650 6.293698 TGCTTCGTATGTAGTCCATAGTAGA 58.706 40.000 0.00 0.00 36.71 2.59
4274 4651 6.769341 TGCTTCGTATGTAGTCCATAGTAGAA 59.231 38.462 0.00 0.00 36.71 2.10
4275 4652 7.447545 TGCTTCGTATGTAGTCCATAGTAGAAT 59.552 37.037 0.00 0.00 36.71 2.40
4276 4653 7.964011 GCTTCGTATGTAGTCCATAGTAGAATC 59.036 40.741 0.00 0.00 36.71 2.52
4277 4654 9.221933 CTTCGTATGTAGTCCATAGTAGAATCT 57.778 37.037 0.00 0.00 36.71 2.40
4278 4655 8.774890 TCGTATGTAGTCCATAGTAGAATCTC 57.225 38.462 0.00 0.00 36.71 2.75
4279 4656 8.595421 TCGTATGTAGTCCATAGTAGAATCTCT 58.405 37.037 0.00 0.00 36.71 3.10
4280 4657 9.872721 CGTATGTAGTCCATAGTAGAATCTCTA 57.127 37.037 0.00 0.00 36.71 2.43
4305 4682 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
4306 4683 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
4307 4684 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4308 4685 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4492 4922 6.907212 CAGTTCATCACGGTGCTAATAATTTC 59.093 38.462 2.51 0.00 0.00 2.17
4498 4928 5.815740 TCACGGTGCTAATAATTTCCTTCTC 59.184 40.000 2.51 0.00 0.00 2.87
4882 5334 3.845781 ATATGGTTCTGAATGTCCGCT 57.154 42.857 0.00 0.00 0.00 5.52
4883 5335 4.955811 ATATGGTTCTGAATGTCCGCTA 57.044 40.909 0.00 0.00 0.00 4.26
4884 5336 3.845781 ATGGTTCTGAATGTCCGCTAT 57.154 42.857 0.00 0.00 0.00 2.97
4885 5337 2.905075 TGGTTCTGAATGTCCGCTATG 58.095 47.619 0.00 0.00 0.00 2.23
4886 5338 2.499693 TGGTTCTGAATGTCCGCTATGA 59.500 45.455 0.00 0.00 0.00 2.15
4887 5339 3.055458 TGGTTCTGAATGTCCGCTATGAA 60.055 43.478 0.00 0.00 0.00 2.57
4888 5340 4.130118 GGTTCTGAATGTCCGCTATGAAT 58.870 43.478 0.00 0.00 0.00 2.57
4889 5341 4.024556 GGTTCTGAATGTCCGCTATGAATG 60.025 45.833 0.00 0.00 0.00 2.67
4890 5342 4.406648 TCTGAATGTCCGCTATGAATGT 57.593 40.909 0.00 0.00 0.00 2.71
4891 5343 4.371786 TCTGAATGTCCGCTATGAATGTC 58.628 43.478 0.00 0.00 0.00 3.06
4892 5344 3.466836 TGAATGTCCGCTATGAATGTCC 58.533 45.455 0.00 0.00 0.00 4.02
4893 5345 2.154854 ATGTCCGCTATGAATGTCCG 57.845 50.000 0.00 0.00 0.00 4.79
4894 5346 0.529773 TGTCCGCTATGAATGTCCGC 60.530 55.000 0.00 0.00 0.00 5.54
4937 5389 1.079405 GCGCCACCTACAAGTAGCA 60.079 57.895 0.00 0.00 31.95 3.49
5002 5457 4.201970 GCATATTTTAGCACGTTAGCCCAA 60.202 41.667 0.00 0.00 34.23 4.12
5015 5470 5.106317 ACGTTAGCCCAAGATTTACATGTTG 60.106 40.000 2.30 0.00 34.14 3.33
5141 5596 2.766229 GGCCTCCTCTCCCTCCAC 60.766 72.222 0.00 0.00 0.00 4.02
5181 5636 2.657237 CGCGACCCTCACCTTCTT 59.343 61.111 0.00 0.00 0.00 2.52
5244 5732 2.722201 CGAAACCTAGCCGCCTCCT 61.722 63.158 0.00 0.00 0.00 3.69
5359 5874 2.231721 GTGCCCTTCTCGTCTAAAGACT 59.768 50.000 8.41 0.00 42.66 3.24
5369 5885 2.112190 GTCTAAAGACTGAGGGGAGGG 58.888 57.143 2.81 0.00 41.65 4.30
5430 5946 2.909965 GGCAACGGTTCAAGGGCA 60.910 61.111 0.00 0.00 0.00 5.36
5553 6082 1.345715 CGGATCAGGGCCTAAGGGTT 61.346 60.000 5.28 0.00 34.45 4.11
5568 6097 2.722201 GGTTCGATCTGGGTCGCCT 61.722 63.158 0.00 0.00 41.22 5.52
5582 6111 2.434843 CGCCTCCTGCCATGGACTA 61.435 63.158 18.40 0.00 36.24 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.740447 GACACGATGTTTACCCAGGTTC 59.260 50.000 0.00 0.00 0.00 3.62
1 2 2.551504 GGACACGATGTTTACCCAGGTT 60.552 50.000 0.00 0.00 0.00 3.50
2 3 1.002773 GGACACGATGTTTACCCAGGT 59.997 52.381 0.00 0.00 0.00 4.00
3 4 1.677820 GGGACACGATGTTTACCCAGG 60.678 57.143 0.00 0.00 37.50 4.45
4 5 1.677820 GGGGACACGATGTTTACCCAG 60.678 57.143 0.00 0.00 38.30 4.45
5 6 0.325602 GGGGACACGATGTTTACCCA 59.674 55.000 0.00 0.00 38.30 4.51
6 7 0.616891 AGGGGACACGATGTTTACCC 59.383 55.000 13.43 13.43 38.53 3.69
7 8 1.734163 CAGGGGACACGATGTTTACC 58.266 55.000 0.00 0.00 0.00 2.85
8 9 1.084289 GCAGGGGACACGATGTTTAC 58.916 55.000 0.00 0.00 0.00 2.01
9 10 0.035820 GGCAGGGGACACGATGTTTA 60.036 55.000 0.00 0.00 0.00 2.01
10 11 1.303317 GGCAGGGGACACGATGTTT 60.303 57.895 0.00 0.00 0.00 2.83
11 12 1.779061 AAGGCAGGGGACACGATGTT 61.779 55.000 0.00 0.00 0.00 2.71
12 13 2.185310 GAAGGCAGGGGACACGATGT 62.185 60.000 0.00 0.00 0.00 3.06
13 14 1.450312 GAAGGCAGGGGACACGATG 60.450 63.158 0.00 0.00 0.00 3.84
14 15 1.613630 AGAAGGCAGGGGACACGAT 60.614 57.895 0.00 0.00 0.00 3.73
15 16 2.203788 AGAAGGCAGGGGACACGA 60.204 61.111 0.00 0.00 0.00 4.35
16 17 2.046892 CAGAAGGCAGGGGACACG 60.047 66.667 0.00 0.00 0.00 4.49
17 18 0.690762 TAACAGAAGGCAGGGGACAC 59.309 55.000 0.00 0.00 0.00 3.67
18 19 0.690762 GTAACAGAAGGCAGGGGACA 59.309 55.000 0.00 0.00 0.00 4.02
19 20 0.035343 GGTAACAGAAGGCAGGGGAC 60.035 60.000 0.00 0.00 0.00 4.46
20 21 0.178873 AGGTAACAGAAGGCAGGGGA 60.179 55.000 0.00 0.00 41.41 4.81
21 22 0.698818 AAGGTAACAGAAGGCAGGGG 59.301 55.000 0.00 0.00 41.41 4.79
22 23 1.676014 CGAAGGTAACAGAAGGCAGGG 60.676 57.143 0.00 0.00 41.41 4.45
23 24 1.275291 TCGAAGGTAACAGAAGGCAGG 59.725 52.381 0.00 0.00 41.41 4.85
24 25 2.743636 TCGAAGGTAACAGAAGGCAG 57.256 50.000 0.00 0.00 41.41 4.85
25 26 2.093658 GGATCGAAGGTAACAGAAGGCA 60.094 50.000 0.00 0.00 41.41 4.75
26 27 2.168728 AGGATCGAAGGTAACAGAAGGC 59.831 50.000 0.00 0.00 41.41 4.35
27 28 4.473477 AAGGATCGAAGGTAACAGAAGG 57.527 45.455 0.00 0.00 41.41 3.46
28 29 6.267070 GTCTAAGGATCGAAGGTAACAGAAG 58.733 44.000 0.00 0.00 41.41 2.85
29 30 5.163683 CGTCTAAGGATCGAAGGTAACAGAA 60.164 44.000 0.00 0.00 41.41 3.02
30 31 4.334759 CGTCTAAGGATCGAAGGTAACAGA 59.665 45.833 0.00 0.00 41.41 3.41
31 32 4.599047 CGTCTAAGGATCGAAGGTAACAG 58.401 47.826 0.00 0.00 41.41 3.16
32 33 3.181493 GCGTCTAAGGATCGAAGGTAACA 60.181 47.826 0.00 0.00 41.41 2.41
33 34 3.181493 TGCGTCTAAGGATCGAAGGTAAC 60.181 47.826 0.00 0.00 0.00 2.50
34 35 3.018856 TGCGTCTAAGGATCGAAGGTAA 58.981 45.455 0.00 0.00 0.00 2.85
35 36 2.357009 GTGCGTCTAAGGATCGAAGGTA 59.643 50.000 0.00 0.00 0.00 3.08
36 37 1.134560 GTGCGTCTAAGGATCGAAGGT 59.865 52.381 0.00 0.00 0.00 3.50
37 38 1.134367 TGTGCGTCTAAGGATCGAAGG 59.866 52.381 0.00 0.00 0.00 3.46
38 39 2.159366 ACTGTGCGTCTAAGGATCGAAG 60.159 50.000 0.00 0.00 0.00 3.79
39 40 1.816835 ACTGTGCGTCTAAGGATCGAA 59.183 47.619 0.00 0.00 0.00 3.71
40 41 1.460504 ACTGTGCGTCTAAGGATCGA 58.539 50.000 0.00 0.00 0.00 3.59
41 42 2.186076 GAACTGTGCGTCTAAGGATCG 58.814 52.381 0.00 0.00 0.00 3.69
42 43 2.186076 CGAACTGTGCGTCTAAGGATC 58.814 52.381 0.00 0.00 0.00 3.36
43 44 1.135083 CCGAACTGTGCGTCTAAGGAT 60.135 52.381 7.51 0.00 0.00 3.24
44 45 0.242825 CCGAACTGTGCGTCTAAGGA 59.757 55.000 7.51 0.00 0.00 3.36
45 46 0.242825 TCCGAACTGTGCGTCTAAGG 59.757 55.000 7.51 0.00 0.00 2.69
46 47 1.719780 GTTCCGAACTGTGCGTCTAAG 59.280 52.381 7.51 0.00 0.00 2.18
47 48 1.603678 GGTTCCGAACTGTGCGTCTAA 60.604 52.381 7.51 0.00 0.00 2.10
48 49 0.038892 GGTTCCGAACTGTGCGTCTA 60.039 55.000 7.51 0.00 0.00 2.59
49 50 1.300697 GGTTCCGAACTGTGCGTCT 60.301 57.895 7.51 0.00 0.00 4.18
50 51 2.315386 GGGTTCCGAACTGTGCGTC 61.315 63.158 7.51 0.00 0.00 5.19
51 52 2.280592 GGGTTCCGAACTGTGCGT 60.281 61.111 7.51 0.00 0.00 5.24
52 53 3.047877 GGGGTTCCGAACTGTGCG 61.048 66.667 11.03 0.00 0.00 5.34
53 54 1.833787 TAGGGGGTTCCGAACTGTGC 61.834 60.000 11.03 0.00 41.52 4.57
54 55 0.036671 GTAGGGGGTTCCGAACTGTG 60.037 60.000 11.03 0.00 41.52 3.66
55 56 1.196766 GGTAGGGGGTTCCGAACTGT 61.197 60.000 11.03 0.00 41.52 3.55
56 57 1.600638 GGTAGGGGGTTCCGAACTG 59.399 63.158 11.03 0.00 41.52 3.16
57 58 1.986210 CGGTAGGGGGTTCCGAACT 60.986 63.158 11.03 0.00 46.05 3.01
58 59 2.580815 CGGTAGGGGGTTCCGAAC 59.419 66.667 2.37 2.37 46.05 3.95
61 62 1.457079 ATCTCGGTAGGGGGTTCCG 60.457 63.158 0.00 0.00 44.76 4.30
62 63 0.105607 AGATCTCGGTAGGGGGTTCC 60.106 60.000 0.00 0.00 0.00 3.62
63 64 1.041437 CAGATCTCGGTAGGGGGTTC 58.959 60.000 0.00 0.00 0.00 3.62
64 65 1.049289 GCAGATCTCGGTAGGGGGTT 61.049 60.000 0.00 0.00 0.00 4.11
65 66 1.457831 GCAGATCTCGGTAGGGGGT 60.458 63.158 0.00 0.00 0.00 4.95
66 67 2.210711 GGCAGATCTCGGTAGGGGG 61.211 68.421 0.00 0.00 0.00 5.40
67 68 2.565645 CGGCAGATCTCGGTAGGGG 61.566 68.421 0.00 0.00 0.00 4.79
68 69 2.565645 CCGGCAGATCTCGGTAGGG 61.566 68.421 13.39 0.00 41.23 3.53
69 70 3.043419 CCGGCAGATCTCGGTAGG 58.957 66.667 13.39 0.67 41.23 3.18
74 75 0.721718 GTCAAAACCGGCAGATCTCG 59.278 55.000 0.00 0.00 0.00 4.04
75 76 1.464997 GTGTCAAAACCGGCAGATCTC 59.535 52.381 0.00 0.00 0.00 2.75
76 77 1.523758 GTGTCAAAACCGGCAGATCT 58.476 50.000 0.00 0.00 0.00 2.75
77 78 0.521735 GGTGTCAAAACCGGCAGATC 59.478 55.000 0.00 0.00 0.00 2.75
78 79 2.641197 GGTGTCAAAACCGGCAGAT 58.359 52.632 0.00 0.00 0.00 2.90
79 80 4.150994 GGTGTCAAAACCGGCAGA 57.849 55.556 0.00 0.00 0.00 4.26
85 86 0.661020 CCACTGTCGGTGTCAAAACC 59.339 55.000 10.90 0.00 43.94 3.27
86 87 1.375551 ACCACTGTCGGTGTCAAAAC 58.624 50.000 10.90 0.00 43.94 2.43
87 88 2.011222 GAACCACTGTCGGTGTCAAAA 58.989 47.619 10.90 0.00 43.94 2.44
88 89 1.658994 GAACCACTGTCGGTGTCAAA 58.341 50.000 10.90 0.00 43.94 2.69
89 90 0.179067 GGAACCACTGTCGGTGTCAA 60.179 55.000 10.90 0.00 43.94 3.18
90 91 1.444250 GGAACCACTGTCGGTGTCA 59.556 57.895 10.90 0.00 43.94 3.58
91 92 1.663702 CGGAACCACTGTCGGTGTC 60.664 63.158 10.90 2.78 43.94 3.67
92 93 2.420043 CGGAACCACTGTCGGTGT 59.580 61.111 10.90 0.00 43.94 4.16
93 94 3.041940 GCGGAACCACTGTCGGTG 61.042 66.667 4.68 4.68 44.96 4.94
94 95 4.657824 CGCGGAACCACTGTCGGT 62.658 66.667 0.00 0.00 42.71 4.69
96 97 4.657824 ACCGCGGAACCACTGTCG 62.658 66.667 35.90 0.00 0.00 4.35
97 98 3.041940 CACCGCGGAACCACTGTC 61.042 66.667 35.90 0.00 0.00 3.51
99 100 4.988598 AGCACCGCGGAACCACTG 62.989 66.667 35.90 19.98 0.00 3.66
100 101 2.180159 ATAAGCACCGCGGAACCACT 62.180 55.000 35.90 17.70 0.00 4.00
350 352 3.402628 AGGTTACGACAACAGAGCATT 57.597 42.857 0.00 0.00 0.00 3.56
352 354 2.547218 GGAAGGTTACGACAACAGAGCA 60.547 50.000 0.00 0.00 0.00 4.26
659 664 6.232692 AGTTATTTGGGTAGTTTTGCGAGTA 58.767 36.000 0.00 0.00 0.00 2.59
708 713 2.373169 GCATATGATCTGACCCTCCCAA 59.627 50.000 6.97 0.00 0.00 4.12
724 729 9.466497 TCATTCCTCTTCAAAAGTTTAGCATAT 57.534 29.630 0.00 0.00 0.00 1.78
725 730 8.862325 TCATTCCTCTTCAAAAGTTTAGCATA 57.138 30.769 0.00 0.00 0.00 3.14
841 846 2.124695 GTGGGTGCGGAAGGGATC 60.125 66.667 0.00 0.00 0.00 3.36
842 847 3.728373 GGTGGGTGCGGAAGGGAT 61.728 66.667 0.00 0.00 0.00 3.85
846 851 4.096003 ATCGGGTGGGTGCGGAAG 62.096 66.667 0.00 0.00 0.00 3.46
847 852 4.090588 GATCGGGTGGGTGCGGAA 62.091 66.667 0.00 0.00 0.00 4.30
1893 1913 1.619432 CCCATACCAACAACAGCCCAT 60.619 52.381 0.00 0.00 0.00 4.00
1896 1916 0.039035 TCCCCATACCAACAACAGCC 59.961 55.000 0.00 0.00 0.00 4.85
1927 1947 7.123847 TCCCCAAAGTACTAAGAGTTAGATGAC 59.876 40.741 0.00 0.00 36.73 3.06
2007 2027 5.173774 ACACTGTGCTCAAACTGTAAATG 57.826 39.130 7.90 0.00 31.78 2.32
2015 2035 4.096732 AGAAACAACACTGTGCTCAAAC 57.903 40.909 7.90 0.00 35.37 2.93
2107 2128 6.456047 GGTTTCGTCGGATAATTTTAGGTGTC 60.456 42.308 0.00 0.00 0.00 3.67
2108 2129 5.352293 GGTTTCGTCGGATAATTTTAGGTGT 59.648 40.000 0.00 0.00 0.00 4.16
2158 2180 1.135972 CAACAAGAATCTTCGGTGCGG 60.136 52.381 0.00 0.00 0.00 5.69
2159 2181 1.531149 ACAACAAGAATCTTCGGTGCG 59.469 47.619 9.34 0.00 0.00 5.34
2160 2182 3.300009 CAACAACAAGAATCTTCGGTGC 58.700 45.455 9.34 0.00 0.00 5.01
2216 2248 8.586273 CATGCCGTGAATACAAAGAAAATTAAG 58.414 33.333 0.00 0.00 0.00 1.85
2331 2363 0.176680 CTCCATAGTGCCGCTTCAGT 59.823 55.000 0.00 0.00 0.00 3.41
2480 2573 5.483811 TGGAAAATAGAACAGACATGCGTA 58.516 37.500 0.00 0.00 0.00 4.42
2488 2581 6.881065 CCTCATTGTCTGGAAAATAGAACAGA 59.119 38.462 0.00 0.00 37.61 3.41
2489 2582 6.881065 TCCTCATTGTCTGGAAAATAGAACAG 59.119 38.462 0.00 0.00 0.00 3.16
2734 2852 0.744874 TACTAGGCGAGTGCACATCC 59.255 55.000 21.04 16.00 45.35 3.51
3105 3298 2.561478 TGTCAGCAGGGAAGGTAAAC 57.439 50.000 0.00 0.00 0.00 2.01
3124 3317 9.289782 AGACTTAGTTGCTAATGAAACTCAATT 57.710 29.630 0.00 0.00 41.02 2.32
3466 3799 9.710900 AGTGGCCTATTTTCTTTTTCTTTTATG 57.289 29.630 3.32 0.00 0.00 1.90
3558 3895 4.216257 CGTCAAACTCTTCCCATCAAATGT 59.784 41.667 0.00 0.00 0.00 2.71
3611 3948 3.322828 TGCTAGAACTACGGAAACTTGGT 59.677 43.478 0.00 0.00 0.00 3.67
3866 4230 5.526115 CACACAAAGATTTCAGCAATGAGT 58.474 37.500 0.00 0.00 0.00 3.41
4017 4381 8.065473 ACAAGTGGATTTTATGTGCAATGATA 57.935 30.769 0.00 0.00 0.00 2.15
4149 4526 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
4150 4527 4.717778 TGATATTTTGGAACGGAGGGAGTA 59.282 41.667 0.00 0.00 0.00 2.59
4151 4528 3.521937 TGATATTTTGGAACGGAGGGAGT 59.478 43.478 0.00 0.00 0.00 3.85
4152 4529 4.130118 CTGATATTTTGGAACGGAGGGAG 58.870 47.826 0.00 0.00 0.00 4.30
4153 4530 3.521937 ACTGATATTTTGGAACGGAGGGA 59.478 43.478 0.00 0.00 0.00 4.20
4154 4531 3.877508 GACTGATATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4155 4532 4.770795 AGACTGATATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
4156 4533 6.149474 ACAAAGACTGATATTTTGGAACGGAG 59.851 38.462 2.75 0.00 36.41 4.63
4157 4534 6.001460 ACAAAGACTGATATTTTGGAACGGA 58.999 36.000 2.75 0.00 36.41 4.69
4158 4535 6.254281 ACAAAGACTGATATTTTGGAACGG 57.746 37.500 2.75 0.00 36.41 4.44
4159 4536 8.251750 TCTACAAAGACTGATATTTTGGAACG 57.748 34.615 2.75 0.00 36.41 3.95
4160 4537 9.436957 TCTCTACAAAGACTGATATTTTGGAAC 57.563 33.333 2.75 0.00 36.41 3.62
4166 4543 9.606631 GTGGAATCTCTACAAAGACTGATATTT 57.393 33.333 0.00 0.00 0.00 1.40
4167 4544 8.986991 AGTGGAATCTCTACAAAGACTGATATT 58.013 33.333 0.00 0.00 29.47 1.28
4168 4545 8.546083 AGTGGAATCTCTACAAAGACTGATAT 57.454 34.615 0.00 0.00 29.47 1.63
4169 4546 7.962995 AGTGGAATCTCTACAAAGACTGATA 57.037 36.000 0.00 0.00 29.47 2.15
4170 4547 6.865834 AGTGGAATCTCTACAAAGACTGAT 57.134 37.500 0.00 0.00 29.47 2.90
4171 4548 7.615757 TCATAGTGGAATCTCTACAAAGACTGA 59.384 37.037 0.00 0.00 29.47 3.41
4172 4549 7.776107 TCATAGTGGAATCTCTACAAAGACTG 58.224 38.462 0.00 0.00 29.47 3.51
4173 4550 7.962995 TCATAGTGGAATCTCTACAAAGACT 57.037 36.000 0.00 0.00 29.47 3.24
4174 4551 7.492994 GGTTCATAGTGGAATCTCTACAAAGAC 59.507 40.741 0.00 0.00 29.47 3.01
4175 4552 7.180229 TGGTTCATAGTGGAATCTCTACAAAGA 59.820 37.037 0.00 0.00 29.47 2.52
4176 4553 7.278868 GTGGTTCATAGTGGAATCTCTACAAAG 59.721 40.741 0.00 0.00 29.47 2.77
4177 4554 7.103641 GTGGTTCATAGTGGAATCTCTACAAA 58.896 38.462 0.00 0.00 29.47 2.83
4178 4555 6.212589 TGTGGTTCATAGTGGAATCTCTACAA 59.787 38.462 0.00 0.00 29.47 2.41
4179 4556 5.719563 TGTGGTTCATAGTGGAATCTCTACA 59.280 40.000 0.00 0.00 29.47 2.74
4180 4557 6.222038 TGTGGTTCATAGTGGAATCTCTAC 57.778 41.667 0.00 0.00 0.00 2.59
4181 4558 7.255486 CGTATGTGGTTCATAGTGGAATCTCTA 60.255 40.741 0.00 0.00 39.36 2.43
4182 4559 5.965033 ATGTGGTTCATAGTGGAATCTCT 57.035 39.130 0.00 0.00 34.67 3.10
4183 4560 5.692204 CGTATGTGGTTCATAGTGGAATCTC 59.308 44.000 0.00 0.00 39.36 2.75
4184 4561 5.453339 CCGTATGTGGTTCATAGTGGAATCT 60.453 44.000 0.00 0.00 39.36 2.40
4185 4562 4.750098 CCGTATGTGGTTCATAGTGGAATC 59.250 45.833 0.00 0.00 39.36 2.52
4186 4563 4.407621 TCCGTATGTGGTTCATAGTGGAAT 59.592 41.667 0.00 0.00 39.60 3.01
4187 4564 3.770388 TCCGTATGTGGTTCATAGTGGAA 59.230 43.478 0.00 0.00 39.60 3.53
4188 4565 3.367321 TCCGTATGTGGTTCATAGTGGA 58.633 45.455 0.00 0.00 39.94 4.02
4189 4566 3.812156 TCCGTATGTGGTTCATAGTGG 57.188 47.619 0.00 0.00 39.36 4.00
4190 4567 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
4191 4568 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
4192 4569 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
4193 4570 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
4194 4571 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
4195 4572 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
4196 4573 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
4197 4574 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
4198 4575 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
4199 4576 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
4200 4577 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
4205 4582 9.809096 CTCTAAAATGCATCTATATACATCCGT 57.191 33.333 0.00 0.00 0.00 4.69
4206 4583 9.809096 ACTCTAAAATGCATCTATATACATCCG 57.191 33.333 0.00 0.00 0.00 4.18
4216 4593 9.534565 GTGAATCTACACTCTAAAATGCATCTA 57.465 33.333 0.00 0.00 37.73 1.98
4217 4594 8.263640 AGTGAATCTACACTCTAAAATGCATCT 58.736 33.333 0.00 0.00 46.36 2.90
4218 4595 8.430801 AGTGAATCTACACTCTAAAATGCATC 57.569 34.615 0.00 0.00 46.36 3.91
4231 4608 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
4232 4609 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
4233 4610 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
4234 4611 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
4235 4612 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
4236 4613 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
4237 4614 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
4238 4615 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
4239 4616 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
4240 4617 6.408858 ACTACATACGAAGCAAAATGAGTG 57.591 37.500 0.00 0.00 0.00 3.51
4241 4618 5.581085 GGACTACATACGAAGCAAAATGAGT 59.419 40.000 0.00 0.00 0.00 3.41
4242 4619 5.580691 TGGACTACATACGAAGCAAAATGAG 59.419 40.000 0.00 0.00 0.00 2.90
4243 4620 5.483811 TGGACTACATACGAAGCAAAATGA 58.516 37.500 0.00 0.00 0.00 2.57
4244 4621 5.794687 TGGACTACATACGAAGCAAAATG 57.205 39.130 0.00 0.00 0.00 2.32
4245 4622 7.272978 ACTATGGACTACATACGAAGCAAAAT 58.727 34.615 0.00 0.00 41.03 1.82
4246 4623 6.636705 ACTATGGACTACATACGAAGCAAAA 58.363 36.000 0.00 0.00 41.03 2.44
4247 4624 6.216801 ACTATGGACTACATACGAAGCAAA 57.783 37.500 0.00 0.00 41.03 3.68
4248 4625 5.847111 ACTATGGACTACATACGAAGCAA 57.153 39.130 0.00 0.00 41.03 3.91
4249 4626 6.293698 TCTACTATGGACTACATACGAAGCA 58.706 40.000 0.00 0.00 41.03 3.91
4250 4627 6.798315 TCTACTATGGACTACATACGAAGC 57.202 41.667 0.00 0.00 41.03 3.86
4251 4628 9.221933 AGATTCTACTATGGACTACATACGAAG 57.778 37.037 0.00 0.00 41.03 3.79
4252 4629 9.217278 GAGATTCTACTATGGACTACATACGAA 57.783 37.037 0.00 0.00 41.03 3.85
4253 4630 8.595421 AGAGATTCTACTATGGACTACATACGA 58.405 37.037 0.00 0.00 41.03 3.43
4254 4631 8.780846 AGAGATTCTACTATGGACTACATACG 57.219 38.462 0.00 0.00 41.03 3.06
4280 4657 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
4281 4658 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
4282 4659 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4283 4660 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4284 4661 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4285 4662 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4286 4663 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4287 4664 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4291 4668 9.827198 TTTATATACTCCCTCCGTTCCTAAATA 57.173 33.333 0.00 0.00 0.00 1.40
4292 4669 8.731591 TTTATATACTCCCTCCGTTCCTAAAT 57.268 34.615 0.00 0.00 0.00 1.40
4293 4670 8.591072 CATTTATATACTCCCTCCGTTCCTAAA 58.409 37.037 0.00 0.00 0.00 1.85
4294 4671 7.310237 GCATTTATATACTCCCTCCGTTCCTAA 60.310 40.741 0.00 0.00 0.00 2.69
4295 4672 6.154021 GCATTTATATACTCCCTCCGTTCCTA 59.846 42.308 0.00 0.00 0.00 2.94
4296 4673 5.046520 GCATTTATATACTCCCTCCGTTCCT 60.047 44.000 0.00 0.00 0.00 3.36
4297 4674 5.176592 GCATTTATATACTCCCTCCGTTCC 58.823 45.833 0.00 0.00 0.00 3.62
4298 4675 5.790593 TGCATTTATATACTCCCTCCGTTC 58.209 41.667 0.00 0.00 0.00 3.95
4299 4676 5.818678 TGCATTTATATACTCCCTCCGTT 57.181 39.130 0.00 0.00 0.00 4.44
4300 4677 6.013725 TCAATGCATTTATATACTCCCTCCGT 60.014 38.462 9.83 0.00 0.00 4.69
4301 4678 6.406370 TCAATGCATTTATATACTCCCTCCG 58.594 40.000 9.83 0.00 0.00 4.63
4302 4679 7.885399 AGTTCAATGCATTTATATACTCCCTCC 59.115 37.037 9.83 0.00 0.00 4.30
4303 4680 8.854614 AGTTCAATGCATTTATATACTCCCTC 57.145 34.615 9.83 0.00 0.00 4.30
4368 4745 3.930336 TGGTGAAGCAGAAGTAGTGATG 58.070 45.455 0.00 0.00 0.00 3.07
4369 4746 4.511527 CATGGTGAAGCAGAAGTAGTGAT 58.488 43.478 0.00 0.00 0.00 3.06
4466 4896 2.093306 TTAGCACCGTGATGAACTGG 57.907 50.000 1.65 0.00 0.00 4.00
4492 4922 6.830324 TCCATCCTGAACAATTAATGAGAAGG 59.170 38.462 0.00 0.00 0.00 3.46
4498 4928 8.689061 TGATTCTTCCATCCTGAACAATTAATG 58.311 33.333 0.00 0.00 0.00 1.90
4882 5334 5.469760 CACCATTTCATAGCGGACATTCATA 59.530 40.000 0.00 0.00 0.00 2.15
4883 5335 4.276678 CACCATTTCATAGCGGACATTCAT 59.723 41.667 0.00 0.00 0.00 2.57
4884 5336 3.627123 CACCATTTCATAGCGGACATTCA 59.373 43.478 0.00 0.00 0.00 2.57
4885 5337 3.876914 TCACCATTTCATAGCGGACATTC 59.123 43.478 0.00 0.00 0.00 2.67
4886 5338 3.884895 TCACCATTTCATAGCGGACATT 58.115 40.909 0.00 0.00 0.00 2.71
4887 5339 3.558931 TCACCATTTCATAGCGGACAT 57.441 42.857 0.00 0.00 0.00 3.06
4888 5340 3.466836 GATCACCATTTCATAGCGGACA 58.533 45.455 0.00 0.00 0.00 4.02
4889 5341 2.476619 CGATCACCATTTCATAGCGGAC 59.523 50.000 0.00 0.00 0.00 4.79
4890 5342 2.364002 TCGATCACCATTTCATAGCGGA 59.636 45.455 0.00 0.00 0.00 5.54
4891 5343 2.476619 GTCGATCACCATTTCATAGCGG 59.523 50.000 0.00 0.00 0.00 5.52
4892 5344 2.153817 CGTCGATCACCATTTCATAGCG 59.846 50.000 0.00 0.00 0.00 4.26
4893 5345 2.096713 GCGTCGATCACCATTTCATAGC 60.097 50.000 0.00 0.00 0.00 2.97
4894 5346 3.123050 TGCGTCGATCACCATTTCATAG 58.877 45.455 0.00 0.00 0.00 2.23
4990 5442 4.394920 ACATGTAAATCTTGGGCTAACGTG 59.605 41.667 0.00 0.00 0.00 4.49
5181 5636 2.547595 CCCTTCCCTCCCTTGGCAA 61.548 63.158 0.00 0.00 0.00 4.52
5224 5701 3.735037 GAGGCGGCTAGGTTTCGGG 62.735 68.421 13.24 0.00 0.00 5.14
5244 5732 2.363795 ATCCTTCGGAGTCGCCCA 60.364 61.111 0.00 0.00 34.05 5.36
5328 5843 4.265056 AAGGGCACGACCACCACC 62.265 66.667 0.00 0.00 42.05 4.61
5329 5844 2.668550 GAAGGGCACGACCACCAC 60.669 66.667 0.00 0.00 42.05 4.16
5330 5845 2.847234 AGAAGGGCACGACCACCA 60.847 61.111 0.00 0.00 42.05 4.17
5331 5846 2.047179 GAGAAGGGCACGACCACC 60.047 66.667 0.00 0.00 42.05 4.61
5332 5847 2.432628 CGAGAAGGGCACGACCAC 60.433 66.667 0.00 0.00 42.05 4.16
5333 5848 2.915659 ACGAGAAGGGCACGACCA 60.916 61.111 0.00 0.00 42.05 4.02
5334 5849 1.310933 TAGACGAGAAGGGCACGACC 61.311 60.000 0.00 0.00 34.56 4.79
5335 5850 0.524862 TTAGACGAGAAGGGCACGAC 59.475 55.000 0.00 0.00 34.56 4.34
5336 5851 1.201647 CTTTAGACGAGAAGGGCACGA 59.798 52.381 0.00 0.00 34.56 4.35
5337 5852 1.201647 TCTTTAGACGAGAAGGGCACG 59.798 52.381 0.00 0.00 36.62 5.34
5338 5853 2.608268 GTCTTTAGACGAGAAGGGCAC 58.392 52.381 0.00 0.00 35.12 5.01
5359 5874 3.940480 TGCACTCCCCTCCCCTCA 61.940 66.667 0.00 0.00 0.00 3.86
5525 6054 2.501128 CCTGATCCGACGCACCAT 59.499 61.111 0.00 0.00 0.00 3.55
5553 6082 2.833582 GGAGGCGACCCAGATCGA 60.834 66.667 0.00 0.00 45.13 3.59
5568 6097 2.357050 CCACAAATAGTCCATGGCAGGA 60.357 50.000 6.96 0.58 34.64 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.