Multiple sequence alignment - TraesCS3B01G254500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G254500 | chr3B | 100.000 | 5599 | 0 | 0 | 1 | 5599 | 410039578 | 410045176 | 0.000000e+00 | 10340.0 |
1 | TraesCS3B01G254500 | chr3B | 99.390 | 164 | 1 | 0 | 4149 | 4312 | 183601084 | 183601247 | 1.180000e-76 | 298.0 |
2 | TraesCS3B01G254500 | chr3D | 96.355 | 4060 | 82 | 30 | 113 | 4152 | 310924399 | 310920386 | 0.000000e+00 | 6617.0 |
3 | TraesCS3B01G254500 | chr3D | 90.293 | 1329 | 57 | 12 | 4310 | 5599 | 310920388 | 310919093 | 0.000000e+00 | 1674.0 |
4 | TraesCS3B01G254500 | chr3D | 94.798 | 173 | 7 | 2 | 4151 | 4322 | 571465367 | 571465538 | 9.250000e-68 | 268.0 |
5 | TraesCS3B01G254500 | chr3D | 94.798 | 173 | 7 | 2 | 4151 | 4322 | 579494953 | 579494782 | 9.250000e-68 | 268.0 |
6 | TraesCS3B01G254500 | chr3D | 94.286 | 175 | 8 | 1 | 4138 | 4312 | 238999403 | 238999575 | 3.330000e-67 | 267.0 |
7 | TraesCS3B01G254500 | chr3D | 86.875 | 160 | 18 | 3 | 5231 | 5389 | 609352497 | 609352654 | 5.760000e-40 | 176.0 |
8 | TraesCS3B01G254500 | chr3A | 95.545 | 3434 | 86 | 30 | 765 | 4152 | 421118429 | 421121841 | 0.000000e+00 | 5432.0 |
9 | TraesCS3B01G254500 | chr3A | 90.327 | 703 | 32 | 10 | 4367 | 5063 | 421121949 | 421122621 | 0.000000e+00 | 889.0 |
10 | TraesCS3B01G254500 | chr3A | 88.627 | 510 | 55 | 3 | 102 | 608 | 208078775 | 208078266 | 7.970000e-173 | 617.0 |
11 | TraesCS3B01G254500 | chr3A | 98.305 | 59 | 1 | 0 | 4310 | 4368 | 421121839 | 421121897 | 2.760000e-18 | 104.0 |
12 | TraesCS3B01G254500 | chr1D | 88.627 | 510 | 55 | 3 | 102 | 609 | 55773921 | 55773413 | 7.970000e-173 | 617.0 |
13 | TraesCS3B01G254500 | chr1D | 88.077 | 520 | 58 | 4 | 102 | 619 | 127496192 | 127495675 | 1.030000e-171 | 614.0 |
14 | TraesCS3B01G254500 | chr1D | 85.549 | 519 | 71 | 4 | 1150 | 1666 | 482839897 | 482839381 | 1.770000e-149 | 540.0 |
15 | TraesCS3B01G254500 | chr1D | 80.206 | 389 | 59 | 15 | 2967 | 3347 | 482838585 | 482838207 | 5.530000e-70 | 276.0 |
16 | TraesCS3B01G254500 | chr1D | 81.602 | 337 | 44 | 12 | 3676 | 3999 | 482837893 | 482837562 | 4.300000e-66 | 263.0 |
17 | TraesCS3B01G254500 | chr1D | 86.161 | 224 | 21 | 3 | 5374 | 5596 | 455542542 | 455542756 | 3.370000e-57 | 233.0 |
18 | TraesCS3B01G254500 | chr1D | 79.078 | 282 | 17 | 11 | 5128 | 5378 | 455534761 | 455535031 | 7.510000e-34 | 156.0 |
19 | TraesCS3B01G254500 | chr1D | 90.000 | 110 | 10 | 1 | 5125 | 5233 | 455648851 | 455648960 | 2.100000e-29 | 141.0 |
20 | TraesCS3B01G254500 | chr1D | 92.647 | 68 | 5 | 0 | 2979 | 3046 | 243701831 | 243701764 | 1.280000e-16 | 99.0 |
21 | TraesCS3B01G254500 | chr6D | 88.350 | 515 | 57 | 3 | 102 | 614 | 128895737 | 128896250 | 2.870000e-172 | 616.0 |
22 | TraesCS3B01G254500 | chr6D | 93.820 | 178 | 10 | 1 | 4138 | 4315 | 406204907 | 406204731 | 3.330000e-67 | 267.0 |
23 | TraesCS3B01G254500 | chr6D | 92.647 | 68 | 5 | 0 | 2979 | 3046 | 415303730 | 415303663 | 1.280000e-16 | 99.0 |
24 | TraesCS3B01G254500 | chr6D | 88.235 | 68 | 8 | 0 | 2979 | 3046 | 441369959 | 441369892 | 1.290000e-11 | 82.4 |
25 | TraesCS3B01G254500 | chr4D | 88.109 | 513 | 59 | 2 | 102 | 612 | 341391285 | 341390773 | 4.800000e-170 | 608.0 |
26 | TraesCS3B01G254500 | chr6A | 87.984 | 516 | 58 | 4 | 102 | 614 | 163136673 | 163137187 | 1.730000e-169 | 606.0 |
27 | TraesCS3B01G254500 | chr6A | 96.262 | 107 | 3 | 1 | 1 | 106 | 56059526 | 56059420 | 2.070000e-39 | 174.0 |
28 | TraesCS3B01G254500 | chr7B | 88.063 | 511 | 59 | 2 | 102 | 610 | 530611808 | 530612318 | 6.200000e-169 | 604.0 |
29 | TraesCS3B01G254500 | chr7B | 81.331 | 541 | 62 | 16 | 5088 | 5597 | 558367202 | 558367734 | 2.430000e-108 | 403.0 |
30 | TraesCS3B01G254500 | chr7B | 96.407 | 167 | 5 | 1 | 4148 | 4313 | 74658159 | 74657993 | 1.990000e-69 | 274.0 |
31 | TraesCS3B01G254500 | chr5D | 88.063 | 511 | 59 | 2 | 102 | 610 | 421572362 | 421572872 | 6.200000e-169 | 604.0 |
32 | TraesCS3B01G254500 | chr5D | 86.000 | 550 | 42 | 4 | 5065 | 5599 | 4340095 | 4340624 | 1.760000e-154 | 556.0 |
33 | TraesCS3B01G254500 | chr5D | 83.400 | 500 | 46 | 15 | 5127 | 5599 | 468323099 | 468322610 | 4.010000e-116 | 429.0 |
34 | TraesCS3B01G254500 | chr5D | 96.226 | 106 | 4 | 0 | 1 | 106 | 92007106 | 92007211 | 2.070000e-39 | 174.0 |
35 | TraesCS3B01G254500 | chr5D | 96.262 | 107 | 3 | 1 | 1 | 106 | 258224672 | 258224778 | 2.070000e-39 | 174.0 |
36 | TraesCS3B01G254500 | chr5A | 88.340 | 506 | 56 | 3 | 102 | 605 | 705097445 | 705096941 | 6.200000e-169 | 604.0 |
37 | TraesCS3B01G254500 | chr1B | 86.127 | 519 | 68 | 4 | 1150 | 1666 | 671202721 | 671202205 | 1.760000e-154 | 556.0 |
38 | TraesCS3B01G254500 | chr1B | 80.748 | 535 | 77 | 8 | 5072 | 5590 | 511409263 | 511408739 | 1.460000e-105 | 394.0 |
39 | TraesCS3B01G254500 | chr1B | 81.009 | 337 | 46 | 13 | 3676 | 3999 | 671200688 | 671200357 | 9.310000e-63 | 252.0 |
40 | TraesCS3B01G254500 | chr1B | 95.370 | 108 | 3 | 2 | 1 | 106 | 45282964 | 45282857 | 2.680000e-38 | 171.0 |
41 | TraesCS3B01G254500 | chr1A | 85.448 | 536 | 75 | 3 | 1147 | 1681 | 579296190 | 579296723 | 6.340000e-154 | 555.0 |
42 | TraesCS3B01G254500 | chr1A | 85.070 | 355 | 34 | 12 | 5247 | 5599 | 543410763 | 543410426 | 1.490000e-90 | 344.0 |
43 | TraesCS3B01G254500 | chr1A | 81.009 | 337 | 46 | 14 | 3676 | 3999 | 579298168 | 579298499 | 9.310000e-63 | 252.0 |
44 | TraesCS3B01G254500 | chr7D | 82.601 | 546 | 54 | 23 | 5080 | 5594 | 163667548 | 163667013 | 1.430000e-120 | 444.0 |
45 | TraesCS3B01G254500 | chr7D | 82.124 | 565 | 47 | 16 | 5065 | 5597 | 459753775 | 459754317 | 8.610000e-118 | 435.0 |
46 | TraesCS3B01G254500 | chr7D | 96.226 | 106 | 3 | 1 | 1 | 105 | 34676049 | 34675944 | 7.460000e-39 | 172.0 |
47 | TraesCS3B01G254500 | chr7D | 95.370 | 108 | 4 | 1 | 1 | 107 | 427365631 | 427365524 | 2.680000e-38 | 171.0 |
48 | TraesCS3B01G254500 | chr2D | 81.753 | 559 | 55 | 14 | 5065 | 5597 | 325508727 | 325508190 | 1.860000e-114 | 424.0 |
49 | TraesCS3B01G254500 | chr2D | 80.071 | 567 | 58 | 20 | 5065 | 5599 | 325468815 | 325468272 | 2.460000e-98 | 370.0 |
50 | TraesCS3B01G254500 | chr2A | 93.889 | 180 | 8 | 3 | 4138 | 4316 | 460904176 | 460903999 | 9.250000e-68 | 268.0 |
51 | TraesCS3B01G254500 | chr2A | 96.262 | 107 | 3 | 1 | 1 | 106 | 693450371 | 693450477 | 2.070000e-39 | 174.0 |
52 | TraesCS3B01G254500 | chr2A | 92.958 | 71 | 4 | 1 | 2979 | 3048 | 349734988 | 349735058 | 9.920000e-18 | 102.0 |
53 | TraesCS3B01G254500 | chr4B | 92.935 | 184 | 11 | 2 | 4143 | 4325 | 660120768 | 660120586 | 3.330000e-67 | 267.0 |
54 | TraesCS3B01G254500 | chr4B | 95.370 | 108 | 3 | 2 | 1 | 106 | 612516316 | 612516209 | 2.680000e-38 | 171.0 |
55 | TraesCS3B01G254500 | chr6B | 90.863 | 197 | 14 | 4 | 4124 | 4319 | 131720938 | 131720745 | 1.550000e-65 | 261.0 |
56 | TraesCS3B01G254500 | chr4A | 89.796 | 147 | 15 | 0 | 5087 | 5233 | 535041665 | 535041811 | 7.400000e-44 | 189.0 |
57 | TraesCS3B01G254500 | chr2B | 95.370 | 108 | 3 | 2 | 1 | 106 | 418214229 | 418214122 | 2.680000e-38 | 171.0 |
58 | TraesCS3B01G254500 | chrUn | 82.883 | 111 | 13 | 6 | 5095 | 5199 | 374468937 | 374468827 | 1.660000e-15 | 95.3 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G254500 | chr3B | 410039578 | 410045176 | 5598 | False | 10340.000000 | 10340 | 100.000000 | 1 | 5599 | 1 | chr3B.!!$F2 | 5598 |
1 | TraesCS3B01G254500 | chr3D | 310919093 | 310924399 | 5306 | True | 4145.500000 | 6617 | 93.324000 | 113 | 5599 | 2 | chr3D.!!$R2 | 5486 |
2 | TraesCS3B01G254500 | chr3A | 421118429 | 421122621 | 4192 | False | 2141.666667 | 5432 | 94.725667 | 765 | 5063 | 3 | chr3A.!!$F1 | 4298 |
3 | TraesCS3B01G254500 | chr3A | 208078266 | 208078775 | 509 | True | 617.000000 | 617 | 88.627000 | 102 | 608 | 1 | chr3A.!!$R1 | 506 |
4 | TraesCS3B01G254500 | chr1D | 55773413 | 55773921 | 508 | True | 617.000000 | 617 | 88.627000 | 102 | 609 | 1 | chr1D.!!$R1 | 507 |
5 | TraesCS3B01G254500 | chr1D | 127495675 | 127496192 | 517 | True | 614.000000 | 614 | 88.077000 | 102 | 619 | 1 | chr1D.!!$R2 | 517 |
6 | TraesCS3B01G254500 | chr1D | 482837562 | 482839897 | 2335 | True | 359.666667 | 540 | 82.452333 | 1150 | 3999 | 3 | chr1D.!!$R4 | 2849 |
7 | TraesCS3B01G254500 | chr6D | 128895737 | 128896250 | 513 | False | 616.000000 | 616 | 88.350000 | 102 | 614 | 1 | chr6D.!!$F1 | 512 |
8 | TraesCS3B01G254500 | chr4D | 341390773 | 341391285 | 512 | True | 608.000000 | 608 | 88.109000 | 102 | 612 | 1 | chr4D.!!$R1 | 510 |
9 | TraesCS3B01G254500 | chr6A | 163136673 | 163137187 | 514 | False | 606.000000 | 606 | 87.984000 | 102 | 614 | 1 | chr6A.!!$F1 | 512 |
10 | TraesCS3B01G254500 | chr7B | 530611808 | 530612318 | 510 | False | 604.000000 | 604 | 88.063000 | 102 | 610 | 1 | chr7B.!!$F1 | 508 |
11 | TraesCS3B01G254500 | chr7B | 558367202 | 558367734 | 532 | False | 403.000000 | 403 | 81.331000 | 5088 | 5597 | 1 | chr7B.!!$F2 | 509 |
12 | TraesCS3B01G254500 | chr5D | 421572362 | 421572872 | 510 | False | 604.000000 | 604 | 88.063000 | 102 | 610 | 1 | chr5D.!!$F4 | 508 |
13 | TraesCS3B01G254500 | chr5D | 4340095 | 4340624 | 529 | False | 556.000000 | 556 | 86.000000 | 5065 | 5599 | 1 | chr5D.!!$F1 | 534 |
14 | TraesCS3B01G254500 | chr5A | 705096941 | 705097445 | 504 | True | 604.000000 | 604 | 88.340000 | 102 | 605 | 1 | chr5A.!!$R1 | 503 |
15 | TraesCS3B01G254500 | chr1B | 671200357 | 671202721 | 2364 | True | 404.000000 | 556 | 83.568000 | 1150 | 3999 | 2 | chr1B.!!$R3 | 2849 |
16 | TraesCS3B01G254500 | chr1B | 511408739 | 511409263 | 524 | True | 394.000000 | 394 | 80.748000 | 5072 | 5590 | 1 | chr1B.!!$R2 | 518 |
17 | TraesCS3B01G254500 | chr1A | 579296190 | 579298499 | 2309 | False | 403.500000 | 555 | 83.228500 | 1147 | 3999 | 2 | chr1A.!!$F1 | 2852 |
18 | TraesCS3B01G254500 | chr7D | 163667013 | 163667548 | 535 | True | 444.000000 | 444 | 82.601000 | 5080 | 5594 | 1 | chr7D.!!$R2 | 514 |
19 | TraesCS3B01G254500 | chr7D | 459753775 | 459754317 | 542 | False | 435.000000 | 435 | 82.124000 | 5065 | 5597 | 1 | chr7D.!!$F1 | 532 |
20 | TraesCS3B01G254500 | chr2D | 325508190 | 325508727 | 537 | True | 424.000000 | 424 | 81.753000 | 5065 | 5597 | 1 | chr2D.!!$R2 | 532 |
21 | TraesCS3B01G254500 | chr2D | 325468272 | 325468815 | 543 | True | 370.000000 | 370 | 80.071000 | 5065 | 5599 | 1 | chr2D.!!$R1 | 534 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
38 | 39 | 0.035343 | GTCCCCTGCCTTCTGTTACC | 60.035 | 60.000 | 0.00 | 0.00 | 0.0 | 2.85 | F |
73 | 74 | 0.036671 | CACAGTTCGGAACCCCCTAC | 60.037 | 60.000 | 16.84 | 0.00 | 0.0 | 3.18 | F |
81 | 82 | 0.105607 | GGAACCCCCTACCGAGATCT | 60.106 | 60.000 | 0.00 | 0.00 | 0.0 | 2.75 | F |
846 | 851 | 0.253327 | AACTCGCTTCCCTTGATCCC | 59.747 | 55.000 | 0.00 | 0.00 | 0.0 | 3.85 | F |
2159 | 2181 | 0.388659 | TCACATGCAAACTGTTGGCC | 59.611 | 50.000 | 16.85 | 0.00 | 35.1 | 5.36 | F |
2160 | 2182 | 0.940519 | CACATGCAAACTGTTGGCCG | 60.941 | 55.000 | 16.85 | 10.57 | 35.1 | 6.13 | F |
3124 | 3317 | 1.771854 | TGTTTACCTTCCCTGCTGACA | 59.228 | 47.619 | 0.00 | 0.00 | 0.0 | 3.58 | F |
4164 | 4541 | 1.136500 | GTGATGTACTCCCTCCGTTCC | 59.864 | 57.143 | 0.00 | 0.00 | 0.0 | 3.62 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1896 | 1916 | 0.039035 | TCCCCATACCAACAACAGCC | 59.961 | 55.000 | 0.00 | 0.0 | 0.00 | 4.85 | R |
2015 | 2035 | 4.096732 | AGAAACAACACTGTGCTCAAAC | 57.903 | 40.909 | 7.90 | 0.0 | 35.37 | 2.93 | R |
2108 | 2129 | 5.352293 | GGTTTCGTCGGATAATTTTAGGTGT | 59.648 | 40.000 | 0.00 | 0.0 | 0.00 | 4.16 | R |
2331 | 2363 | 0.176680 | CTCCATAGTGCCGCTTCAGT | 59.823 | 55.000 | 0.00 | 0.0 | 0.00 | 3.41 | R |
3105 | 3298 | 2.561478 | TGTCAGCAGGGAAGGTAAAC | 57.439 | 50.000 | 0.00 | 0.0 | 0.00 | 2.01 | R |
4149 | 4526 | 2.845363 | TTTTGGAACGGAGGGAGTAC | 57.155 | 50.000 | 0.00 | 0.0 | 0.00 | 2.73 | R |
4466 | 4896 | 2.093306 | TTAGCACCGTGATGAACTGG | 57.907 | 50.000 | 1.65 | 0.0 | 0.00 | 4.00 | R |
5335 | 5850 | 0.524862 | TTAGACGAGAAGGGCACGAC | 59.475 | 55.000 | 0.00 | 0.0 | 34.56 | 4.34 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 2.774687 | GAACCTGGGTAAACATCGTGT | 58.225 | 47.619 | 0.00 | 0.00 | 0.00 | 4.49 |
21 | 22 | 2.467566 | ACCTGGGTAAACATCGTGTC | 57.532 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
22 | 23 | 1.002773 | ACCTGGGTAAACATCGTGTCC | 59.997 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
23 | 24 | 1.677820 | CCTGGGTAAACATCGTGTCCC | 60.678 | 57.143 | 0.00 | 0.00 | 35.85 | 4.46 |
24 | 25 | 0.325602 | TGGGTAAACATCGTGTCCCC | 59.674 | 55.000 | 9.39 | 10.06 | 34.88 | 4.81 |
25 | 26 | 0.616891 | GGGTAAACATCGTGTCCCCT | 59.383 | 55.000 | 10.47 | 0.00 | 32.86 | 4.79 |
26 | 27 | 1.677820 | GGGTAAACATCGTGTCCCCTG | 60.678 | 57.143 | 10.47 | 0.00 | 32.86 | 4.45 |
27 | 28 | 1.084289 | GTAAACATCGTGTCCCCTGC | 58.916 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
28 | 29 | 0.035820 | TAAACATCGTGTCCCCTGCC | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
29 | 30 | 1.779061 | AAACATCGTGTCCCCTGCCT | 61.779 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
30 | 31 | 1.779061 | AACATCGTGTCCCCTGCCTT | 61.779 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
31 | 32 | 1.450312 | CATCGTGTCCCCTGCCTTC | 60.450 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
32 | 33 | 1.613630 | ATCGTGTCCCCTGCCTTCT | 60.614 | 57.895 | 0.00 | 0.00 | 0.00 | 2.85 |
33 | 34 | 1.903877 | ATCGTGTCCCCTGCCTTCTG | 61.904 | 60.000 | 0.00 | 0.00 | 0.00 | 3.02 |
34 | 35 | 2.883828 | CGTGTCCCCTGCCTTCTGT | 61.884 | 63.158 | 0.00 | 0.00 | 0.00 | 3.41 |
35 | 36 | 1.456287 | GTGTCCCCTGCCTTCTGTT | 59.544 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
36 | 37 | 0.690762 | GTGTCCCCTGCCTTCTGTTA | 59.309 | 55.000 | 0.00 | 0.00 | 0.00 | 2.41 |
37 | 38 | 0.690762 | TGTCCCCTGCCTTCTGTTAC | 59.309 | 55.000 | 0.00 | 0.00 | 0.00 | 2.50 |
38 | 39 | 0.035343 | GTCCCCTGCCTTCTGTTACC | 60.035 | 60.000 | 0.00 | 0.00 | 0.00 | 2.85 |
39 | 40 | 0.178873 | TCCCCTGCCTTCTGTTACCT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.08 |
40 | 41 | 0.698818 | CCCCTGCCTTCTGTTACCTT | 59.301 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
41 | 42 | 1.340114 | CCCCTGCCTTCTGTTACCTTC | 60.340 | 57.143 | 0.00 | 0.00 | 0.00 | 3.46 |
42 | 43 | 1.676014 | CCCTGCCTTCTGTTACCTTCG | 60.676 | 57.143 | 0.00 | 0.00 | 0.00 | 3.79 |
43 | 44 | 1.275291 | CCTGCCTTCTGTTACCTTCGA | 59.725 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
44 | 45 | 2.093447 | CCTGCCTTCTGTTACCTTCGAT | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 3.59 |
45 | 46 | 3.190874 | CTGCCTTCTGTTACCTTCGATC | 58.809 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
46 | 47 | 2.093658 | TGCCTTCTGTTACCTTCGATCC | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
47 | 48 | 2.168728 | GCCTTCTGTTACCTTCGATCCT | 59.831 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
48 | 49 | 3.369576 | GCCTTCTGTTACCTTCGATCCTT | 60.370 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
49 | 50 | 4.142004 | GCCTTCTGTTACCTTCGATCCTTA | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 2.69 |
50 | 51 | 5.593010 | CCTTCTGTTACCTTCGATCCTTAG | 58.407 | 45.833 | 0.00 | 0.00 | 0.00 | 2.18 |
51 | 52 | 5.360144 | CCTTCTGTTACCTTCGATCCTTAGA | 59.640 | 44.000 | 0.00 | 0.00 | 0.00 | 2.10 |
52 | 53 | 5.831702 | TCTGTTACCTTCGATCCTTAGAC | 57.168 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
53 | 54 | 4.334759 | TCTGTTACCTTCGATCCTTAGACG | 59.665 | 45.833 | 0.00 | 0.00 | 0.00 | 4.18 |
54 | 55 | 3.181493 | TGTTACCTTCGATCCTTAGACGC | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 5.19 |
55 | 56 | 1.471119 | ACCTTCGATCCTTAGACGCA | 58.529 | 50.000 | 0.00 | 0.00 | 0.00 | 5.24 |
56 | 57 | 1.134560 | ACCTTCGATCCTTAGACGCAC | 59.865 | 52.381 | 0.00 | 0.00 | 0.00 | 5.34 |
57 | 58 | 1.134367 | CCTTCGATCCTTAGACGCACA | 59.866 | 52.381 | 0.00 | 0.00 | 0.00 | 4.57 |
58 | 59 | 2.455032 | CTTCGATCCTTAGACGCACAG | 58.545 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
59 | 60 | 1.460504 | TCGATCCTTAGACGCACAGT | 58.539 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
60 | 61 | 1.816835 | TCGATCCTTAGACGCACAGTT | 59.183 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
61 | 62 | 2.159421 | TCGATCCTTAGACGCACAGTTC | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
62 | 63 | 2.186076 | GATCCTTAGACGCACAGTTCG | 58.814 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
63 | 64 | 0.242825 | TCCTTAGACGCACAGTTCGG | 59.757 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
64 | 65 | 0.242825 | CCTTAGACGCACAGTTCGGA | 59.757 | 55.000 | 0.00 | 0.00 | 0.00 | 4.55 |
65 | 66 | 1.336517 | CCTTAGACGCACAGTTCGGAA | 60.337 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
66 | 67 | 1.719780 | CTTAGACGCACAGTTCGGAAC | 59.280 | 52.381 | 12.91 | 12.91 | 0.00 | 3.62 |
67 | 68 | 0.038892 | TAGACGCACAGTTCGGAACC | 60.039 | 55.000 | 16.84 | 1.35 | 0.00 | 3.62 |
68 | 69 | 2.280592 | ACGCACAGTTCGGAACCC | 60.281 | 61.111 | 16.84 | 3.33 | 0.00 | 4.11 |
69 | 70 | 3.047877 | CGCACAGTTCGGAACCCC | 61.048 | 66.667 | 16.84 | 3.00 | 0.00 | 4.95 |
70 | 71 | 2.671963 | GCACAGTTCGGAACCCCC | 60.672 | 66.667 | 16.84 | 0.60 | 0.00 | 5.40 |
71 | 72 | 3.157680 | CACAGTTCGGAACCCCCT | 58.842 | 61.111 | 16.84 | 0.00 | 0.00 | 4.79 |
72 | 73 | 1.833787 | GCACAGTTCGGAACCCCCTA | 61.834 | 60.000 | 16.84 | 0.00 | 0.00 | 3.53 |
73 | 74 | 0.036671 | CACAGTTCGGAACCCCCTAC | 60.037 | 60.000 | 16.84 | 0.00 | 0.00 | 3.18 |
74 | 75 | 1.196766 | ACAGTTCGGAACCCCCTACC | 61.197 | 60.000 | 16.84 | 0.00 | 0.00 | 3.18 |
75 | 76 | 1.986210 | AGTTCGGAACCCCCTACCG | 60.986 | 63.158 | 16.84 | 0.00 | 46.71 | 4.02 |
79 | 80 | 4.722389 | GGAACCCCCTACCGAGAT | 57.278 | 61.111 | 0.00 | 0.00 | 0.00 | 2.75 |
80 | 81 | 2.438730 | GGAACCCCCTACCGAGATC | 58.561 | 63.158 | 0.00 | 0.00 | 0.00 | 2.75 |
81 | 82 | 0.105607 | GGAACCCCCTACCGAGATCT | 60.106 | 60.000 | 0.00 | 0.00 | 0.00 | 2.75 |
82 | 83 | 1.041437 | GAACCCCCTACCGAGATCTG | 58.959 | 60.000 | 0.00 | 0.00 | 0.00 | 2.90 |
83 | 84 | 1.049289 | AACCCCCTACCGAGATCTGC | 61.049 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
84 | 85 | 2.210711 | CCCCCTACCGAGATCTGCC | 61.211 | 68.421 | 0.00 | 0.00 | 0.00 | 4.85 |
85 | 86 | 2.565645 | CCCCTACCGAGATCTGCCG | 61.566 | 68.421 | 0.00 | 0.00 | 0.00 | 5.69 |
90 | 91 | 4.617875 | CCGAGATCTGCCGGTTTT | 57.382 | 55.556 | 13.39 | 0.00 | 40.78 | 2.43 |
91 | 92 | 2.089854 | CCGAGATCTGCCGGTTTTG | 58.910 | 57.895 | 13.39 | 0.00 | 40.78 | 2.44 |
92 | 93 | 0.391130 | CCGAGATCTGCCGGTTTTGA | 60.391 | 55.000 | 13.39 | 0.00 | 40.78 | 2.69 |
93 | 94 | 0.721718 | CGAGATCTGCCGGTTTTGAC | 59.278 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
94 | 95 | 1.808411 | GAGATCTGCCGGTTTTGACA | 58.192 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
95 | 96 | 1.464997 | GAGATCTGCCGGTTTTGACAC | 59.535 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
96 | 97 | 0.521735 | GATCTGCCGGTTTTGACACC | 59.478 | 55.000 | 1.90 | 0.00 | 0.00 | 4.16 |
117 | 118 | 4.250305 | AGTGGTTCCGCGGTGCTT | 62.250 | 61.111 | 27.15 | 4.36 | 0.00 | 3.91 |
359 | 361 | 3.058160 | GCGGTGGCAATGCTCTGT | 61.058 | 61.111 | 4.82 | 0.00 | 39.62 | 3.41 |
400 | 402 | 2.177531 | CGCATTGGAGCACACAGC | 59.822 | 61.111 | 0.00 | 0.00 | 46.19 | 4.40 |
425 | 428 | 5.985530 | TCGTCATATGCGATTTCATCTCTTT | 59.014 | 36.000 | 15.22 | 0.00 | 33.09 | 2.52 |
478 | 482 | 3.418995 | TGCTCTTATAGTACTAGGGGCG | 58.581 | 50.000 | 8.85 | 0.00 | 0.00 | 6.13 |
537 | 541 | 1.376037 | TGTGCGTGTGTTGTGGTGA | 60.376 | 52.632 | 0.00 | 0.00 | 0.00 | 4.02 |
561 | 566 | 2.227194 | GGTTTGTACCTGAGTTGTGGG | 58.773 | 52.381 | 0.00 | 0.00 | 41.53 | 4.61 |
626 | 631 | 8.827177 | TTCGATAAAGATATTATGGTGGTCAC | 57.173 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
708 | 713 | 9.645059 | CTTCGTCATCATATACACCTTAATGAT | 57.355 | 33.333 | 0.00 | 0.00 | 39.14 | 2.45 |
724 | 729 | 2.268796 | TGATTGGGAGGGTCAGATCA | 57.731 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
725 | 730 | 2.780414 | TGATTGGGAGGGTCAGATCAT | 58.220 | 47.619 | 0.00 | 0.00 | 0.00 | 2.45 |
803 | 808 | 2.737376 | GGCTCACGGACGGACAAC | 60.737 | 66.667 | 0.00 | 0.00 | 0.00 | 3.32 |
804 | 809 | 2.737376 | GCTCACGGACGGACAACC | 60.737 | 66.667 | 0.00 | 0.00 | 0.00 | 3.77 |
805 | 810 | 3.048602 | CTCACGGACGGACAACCT | 58.951 | 61.111 | 0.00 | 0.00 | 0.00 | 3.50 |
806 | 811 | 1.080705 | CTCACGGACGGACAACCTC | 60.081 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
807 | 812 | 2.048503 | CACGGACGGACAACCTCC | 60.049 | 66.667 | 0.00 | 0.00 | 35.33 | 4.30 |
841 | 846 | 2.680913 | CGGCAACTCGCTTCCCTTG | 61.681 | 63.158 | 0.00 | 0.00 | 41.91 | 3.61 |
842 | 847 | 1.302511 | GGCAACTCGCTTCCCTTGA | 60.303 | 57.895 | 0.00 | 0.00 | 41.91 | 3.02 |
843 | 848 | 0.678048 | GGCAACTCGCTTCCCTTGAT | 60.678 | 55.000 | 0.00 | 0.00 | 41.91 | 2.57 |
844 | 849 | 0.729690 | GCAACTCGCTTCCCTTGATC | 59.270 | 55.000 | 0.00 | 0.00 | 37.77 | 2.92 |
845 | 850 | 1.373570 | CAACTCGCTTCCCTTGATCC | 58.626 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
846 | 851 | 0.253327 | AACTCGCTTCCCTTGATCCC | 59.747 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
847 | 852 | 0.618968 | ACTCGCTTCCCTTGATCCCT | 60.619 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
848 | 853 | 0.543749 | CTCGCTTCCCTTGATCCCTT | 59.456 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2007 | 2027 | 6.044046 | TGAAATGGCATTGTAGATTTGCATC | 58.956 | 36.000 | 14.47 | 3.46 | 38.12 | 3.91 |
2015 | 2035 | 7.168637 | GGCATTGTAGATTTGCATCATTTACAG | 59.831 | 37.037 | 8.78 | 2.94 | 38.12 | 2.74 |
2107 | 2128 | 1.394917 | GCCTGCACGTGTATCAGAAAG | 59.605 | 52.381 | 18.38 | 4.96 | 0.00 | 2.62 |
2108 | 2129 | 2.930887 | GCCTGCACGTGTATCAGAAAGA | 60.931 | 50.000 | 18.38 | 0.00 | 0.00 | 2.52 |
2158 | 2180 | 2.129607 | CTTCACATGCAAACTGTTGGC | 58.870 | 47.619 | 12.99 | 12.99 | 35.10 | 4.52 |
2159 | 2181 | 0.388659 | TCACATGCAAACTGTTGGCC | 59.611 | 50.000 | 16.85 | 0.00 | 35.10 | 5.36 |
2160 | 2182 | 0.940519 | CACATGCAAACTGTTGGCCG | 60.941 | 55.000 | 16.85 | 10.57 | 35.10 | 6.13 |
2216 | 2248 | 9.640963 | TTTATCACTAGAAAGTAGAAAGTGCTC | 57.359 | 33.333 | 0.00 | 0.00 | 37.94 | 4.26 |
2331 | 2363 | 4.500887 | GCGTATTATGTTGCTCCTGAGGTA | 60.501 | 45.833 | 0.00 | 0.00 | 0.00 | 3.08 |
2486 | 2579 | 9.612620 | GCTTTTTATTTATCTGCTAATACGCAT | 57.387 | 29.630 | 0.00 | 0.00 | 39.52 | 4.73 |
2734 | 2852 | 4.807304 | GCATGGCATTCTTATTTGTGAAGG | 59.193 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
2845 | 2964 | 8.608844 | AGCACTGCTAATAATGTTATACTTCC | 57.391 | 34.615 | 0.21 | 0.00 | 36.99 | 3.46 |
2903 | 3023 | 6.152154 | TCTCGTTGTTGAAGACCTGTCATATA | 59.848 | 38.462 | 0.00 | 0.00 | 0.00 | 0.86 |
3124 | 3317 | 1.771854 | TGTTTACCTTCCCTGCTGACA | 59.228 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
3370 | 3563 | 5.046231 | TGTTTGTACTCCACAGGCATATACA | 60.046 | 40.000 | 0.00 | 0.00 | 38.72 | 2.29 |
3466 | 3799 | 4.023107 | GGAAGTTTGGAAGCAACTACCTTC | 60.023 | 45.833 | 0.00 | 0.00 | 38.33 | 3.46 |
3611 | 3948 | 7.465245 | GCATTTAAAAGTGCTTTGCAACTGTTA | 60.465 | 33.333 | 0.00 | 0.00 | 41.47 | 2.41 |
3645 | 3997 | 6.292919 | CCGTAGTTCTAGCATAAGCCATTTTC | 60.293 | 42.308 | 0.00 | 0.00 | 43.56 | 2.29 |
3866 | 4230 | 6.393990 | AGTTGTGACTGTTTGCATTGTTTTA | 58.606 | 32.000 | 0.00 | 0.00 | 33.99 | 1.52 |
4056 | 4420 | 4.739793 | TCCACTTGTTCAGGGATGAAAAT | 58.260 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
4063 | 4427 | 7.658575 | ACTTGTTCAGGGATGAAAATTTTGATG | 59.341 | 33.333 | 8.47 | 0.00 | 0.00 | 3.07 |
4129 | 4506 | 5.294306 | TCATCGCTTTTGCTAGGATTTACTG | 59.706 | 40.000 | 0.00 | 0.00 | 44.80 | 2.74 |
4160 | 4537 | 7.110810 | TCTATATTAGTGATGTACTCCCTCCG | 58.889 | 42.308 | 0.00 | 0.00 | 40.89 | 4.63 |
4161 | 4538 | 3.377253 | TTAGTGATGTACTCCCTCCGT | 57.623 | 47.619 | 0.00 | 0.00 | 40.89 | 4.69 |
4162 | 4539 | 2.233305 | AGTGATGTACTCCCTCCGTT | 57.767 | 50.000 | 0.00 | 0.00 | 33.17 | 4.44 |
4163 | 4540 | 2.100989 | AGTGATGTACTCCCTCCGTTC | 58.899 | 52.381 | 0.00 | 0.00 | 33.17 | 3.95 |
4164 | 4541 | 1.136500 | GTGATGTACTCCCTCCGTTCC | 59.864 | 57.143 | 0.00 | 0.00 | 0.00 | 3.62 |
4165 | 4542 | 1.272816 | TGATGTACTCCCTCCGTTCCA | 60.273 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
4166 | 4543 | 1.829222 | GATGTACTCCCTCCGTTCCAA | 59.171 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
4167 | 4544 | 1.719529 | TGTACTCCCTCCGTTCCAAA | 58.280 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
4168 | 4545 | 2.048601 | TGTACTCCCTCCGTTCCAAAA | 58.951 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
4169 | 4546 | 2.640826 | TGTACTCCCTCCGTTCCAAAAT | 59.359 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
4170 | 4547 | 3.839490 | TGTACTCCCTCCGTTCCAAAATA | 59.161 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
4171 | 4548 | 4.472108 | TGTACTCCCTCCGTTCCAAAATAT | 59.528 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
4172 | 4549 | 4.152284 | ACTCCCTCCGTTCCAAAATATC | 57.848 | 45.455 | 0.00 | 0.00 | 0.00 | 1.63 |
4173 | 4550 | 3.521937 | ACTCCCTCCGTTCCAAAATATCA | 59.478 | 43.478 | 0.00 | 0.00 | 0.00 | 2.15 |
4174 | 4551 | 4.130118 | CTCCCTCCGTTCCAAAATATCAG | 58.870 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
4175 | 4552 | 3.521937 | TCCCTCCGTTCCAAAATATCAGT | 59.478 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
4176 | 4553 | 3.877508 | CCCTCCGTTCCAAAATATCAGTC | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
4177 | 4554 | 4.384208 | CCCTCCGTTCCAAAATATCAGTCT | 60.384 | 45.833 | 0.00 | 0.00 | 0.00 | 3.24 |
4178 | 4555 | 5.186198 | CCTCCGTTCCAAAATATCAGTCTT | 58.814 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
4179 | 4556 | 5.648092 | CCTCCGTTCCAAAATATCAGTCTTT | 59.352 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
4180 | 4557 | 6.403636 | CCTCCGTTCCAAAATATCAGTCTTTG | 60.404 | 42.308 | 0.00 | 0.00 | 0.00 | 2.77 |
4181 | 4558 | 6.001460 | TCCGTTCCAAAATATCAGTCTTTGT | 58.999 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
4182 | 4559 | 7.162761 | TCCGTTCCAAAATATCAGTCTTTGTA | 58.837 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
4183 | 4560 | 7.333423 | TCCGTTCCAAAATATCAGTCTTTGTAG | 59.667 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
4184 | 4561 | 7.333423 | CCGTTCCAAAATATCAGTCTTTGTAGA | 59.667 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
4185 | 4562 | 8.383619 | CGTTCCAAAATATCAGTCTTTGTAGAG | 58.616 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
4186 | 4563 | 9.436957 | GTTCCAAAATATCAGTCTTTGTAGAGA | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
4192 | 4569 | 9.606631 | AAATATCAGTCTTTGTAGAGATTCCAC | 57.393 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
4193 | 4570 | 6.865834 | ATCAGTCTTTGTAGAGATTCCACT | 57.134 | 37.500 | 0.00 | 0.00 | 0.00 | 4.00 |
4194 | 4571 | 7.962995 | ATCAGTCTTTGTAGAGATTCCACTA | 57.037 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4195 | 4572 | 7.962995 | TCAGTCTTTGTAGAGATTCCACTAT | 57.037 | 36.000 | 0.00 | 0.00 | 0.00 | 2.12 |
4196 | 4573 | 7.776107 | TCAGTCTTTGTAGAGATTCCACTATG | 58.224 | 38.462 | 0.00 | 0.00 | 0.00 | 2.23 |
4197 | 4574 | 7.615757 | TCAGTCTTTGTAGAGATTCCACTATGA | 59.384 | 37.037 | 0.00 | 0.00 | 0.00 | 2.15 |
4198 | 4575 | 8.253810 | CAGTCTTTGTAGAGATTCCACTATGAA | 58.746 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
4199 | 4576 | 8.254508 | AGTCTTTGTAGAGATTCCACTATGAAC | 58.745 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
4200 | 4577 | 7.492994 | GTCTTTGTAGAGATTCCACTATGAACC | 59.507 | 40.741 | 0.00 | 0.00 | 0.00 | 3.62 |
4201 | 4578 | 6.867519 | TTGTAGAGATTCCACTATGAACCA | 57.132 | 37.500 | 0.00 | 0.00 | 0.00 | 3.67 |
4202 | 4579 | 6.222038 | TGTAGAGATTCCACTATGAACCAC | 57.778 | 41.667 | 0.00 | 0.00 | 0.00 | 4.16 |
4203 | 4580 | 5.719563 | TGTAGAGATTCCACTATGAACCACA | 59.280 | 40.000 | 0.00 | 0.00 | 0.00 | 4.17 |
4204 | 4581 | 5.965033 | AGAGATTCCACTATGAACCACAT | 57.035 | 39.130 | 0.00 | 0.00 | 42.39 | 3.21 |
4205 | 4582 | 7.563556 | TGTAGAGATTCCACTATGAACCACATA | 59.436 | 37.037 | 0.00 | 0.00 | 40.07 | 2.29 |
4206 | 4583 | 6.821388 | AGAGATTCCACTATGAACCACATAC | 58.179 | 40.000 | 0.00 | 0.00 | 40.07 | 2.39 |
4207 | 4584 | 5.601662 | AGATTCCACTATGAACCACATACG | 58.398 | 41.667 | 0.00 | 0.00 | 40.07 | 3.06 |
4208 | 4585 | 3.812156 | TCCACTATGAACCACATACGG | 57.188 | 47.619 | 0.00 | 0.00 | 40.07 | 4.02 |
4209 | 4586 | 3.367321 | TCCACTATGAACCACATACGGA | 58.633 | 45.455 | 0.00 | 0.00 | 40.07 | 4.69 |
4210 | 4587 | 3.964688 | TCCACTATGAACCACATACGGAT | 59.035 | 43.478 | 0.00 | 0.00 | 40.07 | 4.18 |
4211 | 4588 | 4.058124 | CCACTATGAACCACATACGGATG | 58.942 | 47.826 | 5.94 | 5.94 | 40.07 | 3.51 |
4213 | 4590 | 5.221362 | CCACTATGAACCACATACGGATGTA | 60.221 | 44.000 | 14.23 | 0.00 | 44.82 | 2.29 |
4214 | 4591 | 6.455647 | CACTATGAACCACATACGGATGTAT | 58.544 | 40.000 | 14.23 | 5.54 | 44.82 | 2.29 |
4215 | 4592 | 7.309560 | CCACTATGAACCACATACGGATGTATA | 60.310 | 40.741 | 14.23 | 6.48 | 44.82 | 1.47 |
4216 | 4593 | 8.251026 | CACTATGAACCACATACGGATGTATAT | 58.749 | 37.037 | 14.23 | 1.68 | 44.82 | 0.86 |
4217 | 4594 | 9.470399 | ACTATGAACCACATACGGATGTATATA | 57.530 | 33.333 | 14.23 | 7.10 | 44.82 | 0.86 |
4218 | 4595 | 9.952188 | CTATGAACCACATACGGATGTATATAG | 57.048 | 37.037 | 14.23 | 12.28 | 44.82 | 1.31 |
4219 | 4596 | 8.589701 | ATGAACCACATACGGATGTATATAGA | 57.410 | 34.615 | 14.23 | 0.00 | 44.82 | 1.98 |
4220 | 4597 | 8.589701 | TGAACCACATACGGATGTATATAGAT | 57.410 | 34.615 | 14.23 | 0.00 | 44.82 | 1.98 |
4221 | 4598 | 8.466798 | TGAACCACATACGGATGTATATAGATG | 58.533 | 37.037 | 14.23 | 0.00 | 44.82 | 2.90 |
4222 | 4599 | 6.806751 | ACCACATACGGATGTATATAGATGC | 58.193 | 40.000 | 14.23 | 0.00 | 44.82 | 3.91 |
4223 | 4600 | 6.379988 | ACCACATACGGATGTATATAGATGCA | 59.620 | 38.462 | 14.23 | 0.00 | 44.82 | 3.96 |
4224 | 4601 | 7.069950 | ACCACATACGGATGTATATAGATGCAT | 59.930 | 37.037 | 14.23 | 0.00 | 44.82 | 3.96 |
4225 | 4602 | 7.928167 | CCACATACGGATGTATATAGATGCATT | 59.072 | 37.037 | 14.23 | 1.23 | 44.82 | 3.56 |
4226 | 4603 | 9.317936 | CACATACGGATGTATATAGATGCATTT | 57.682 | 33.333 | 14.23 | 0.00 | 44.82 | 2.32 |
4227 | 4604 | 9.890629 | ACATACGGATGTATATAGATGCATTTT | 57.109 | 29.630 | 12.79 | 0.00 | 44.77 | 1.82 |
4231 | 4608 | 9.809096 | ACGGATGTATATAGATGCATTTTAGAG | 57.191 | 33.333 | 11.19 | 0.00 | 38.38 | 2.43 |
4232 | 4609 | 9.809096 | CGGATGTATATAGATGCATTTTAGAGT | 57.191 | 33.333 | 11.19 | 0.00 | 38.38 | 3.24 |
4242 | 4619 | 8.430801 | AGATGCATTTTAGAGTGTAGATTCAC | 57.569 | 34.615 | 0.00 | 0.00 | 38.46 | 3.18 |
4254 | 4631 | 7.138692 | AGTGTAGATTCACTCATTTTGCTTC | 57.861 | 36.000 | 0.00 | 0.00 | 44.07 | 3.86 |
4255 | 4632 | 6.017933 | GTGTAGATTCACTCATTTTGCTTCG | 58.982 | 40.000 | 0.00 | 0.00 | 35.68 | 3.79 |
4256 | 4633 | 5.700832 | TGTAGATTCACTCATTTTGCTTCGT | 59.299 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4257 | 4634 | 6.871492 | TGTAGATTCACTCATTTTGCTTCGTA | 59.129 | 34.615 | 0.00 | 0.00 | 0.00 | 3.43 |
4258 | 4635 | 6.992063 | AGATTCACTCATTTTGCTTCGTAT | 57.008 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
4259 | 4636 | 6.779117 | AGATTCACTCATTTTGCTTCGTATG | 58.221 | 36.000 | 0.00 | 0.00 | 0.00 | 2.39 |
4260 | 4637 | 5.940192 | TTCACTCATTTTGCTTCGTATGT | 57.060 | 34.783 | 0.00 | 0.00 | 0.00 | 2.29 |
4261 | 4638 | 7.549134 | AGATTCACTCATTTTGCTTCGTATGTA | 59.451 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
4262 | 4639 | 6.647212 | TCACTCATTTTGCTTCGTATGTAG | 57.353 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
4263 | 4640 | 6.163476 | TCACTCATTTTGCTTCGTATGTAGT | 58.837 | 36.000 | 0.00 | 0.00 | 0.00 | 2.73 |
4264 | 4641 | 6.310467 | TCACTCATTTTGCTTCGTATGTAGTC | 59.690 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
4265 | 4642 | 5.581085 | ACTCATTTTGCTTCGTATGTAGTCC | 59.419 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4266 | 4643 | 5.483811 | TCATTTTGCTTCGTATGTAGTCCA | 58.516 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
4267 | 4644 | 6.112734 | TCATTTTGCTTCGTATGTAGTCCAT | 58.887 | 36.000 | 0.00 | 0.00 | 37.58 | 3.41 |
4268 | 4645 | 7.269316 | TCATTTTGCTTCGTATGTAGTCCATA | 58.731 | 34.615 | 0.00 | 0.00 | 34.86 | 2.74 |
4269 | 4646 | 7.438160 | TCATTTTGCTTCGTATGTAGTCCATAG | 59.562 | 37.037 | 0.00 | 0.00 | 36.71 | 2.23 |
4270 | 4647 | 5.847111 | TTGCTTCGTATGTAGTCCATAGT | 57.153 | 39.130 | 0.00 | 0.00 | 36.71 | 2.12 |
4271 | 4648 | 6.947644 | TTGCTTCGTATGTAGTCCATAGTA | 57.052 | 37.500 | 0.00 | 0.00 | 36.71 | 1.82 |
4272 | 4649 | 6.555812 | TGCTTCGTATGTAGTCCATAGTAG | 57.444 | 41.667 | 0.00 | 0.00 | 36.71 | 2.57 |
4273 | 4650 | 6.293698 | TGCTTCGTATGTAGTCCATAGTAGA | 58.706 | 40.000 | 0.00 | 0.00 | 36.71 | 2.59 |
4274 | 4651 | 6.769341 | TGCTTCGTATGTAGTCCATAGTAGAA | 59.231 | 38.462 | 0.00 | 0.00 | 36.71 | 2.10 |
4275 | 4652 | 7.447545 | TGCTTCGTATGTAGTCCATAGTAGAAT | 59.552 | 37.037 | 0.00 | 0.00 | 36.71 | 2.40 |
4276 | 4653 | 7.964011 | GCTTCGTATGTAGTCCATAGTAGAATC | 59.036 | 40.741 | 0.00 | 0.00 | 36.71 | 2.52 |
4277 | 4654 | 9.221933 | CTTCGTATGTAGTCCATAGTAGAATCT | 57.778 | 37.037 | 0.00 | 0.00 | 36.71 | 2.40 |
4278 | 4655 | 8.774890 | TCGTATGTAGTCCATAGTAGAATCTC | 57.225 | 38.462 | 0.00 | 0.00 | 36.71 | 2.75 |
4279 | 4656 | 8.595421 | TCGTATGTAGTCCATAGTAGAATCTCT | 58.405 | 37.037 | 0.00 | 0.00 | 36.71 | 3.10 |
4280 | 4657 | 9.872721 | CGTATGTAGTCCATAGTAGAATCTCTA | 57.127 | 37.037 | 0.00 | 0.00 | 36.71 | 2.43 |
4305 | 4682 | 8.943909 | ACAAAGACTTATATTTAGGAACGGAG | 57.056 | 34.615 | 0.00 | 0.00 | 0.00 | 4.63 |
4306 | 4683 | 7.985752 | ACAAAGACTTATATTTAGGAACGGAGG | 59.014 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
4307 | 4684 | 6.667558 | AGACTTATATTTAGGAACGGAGGG | 57.332 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
4308 | 4685 | 6.379579 | AGACTTATATTTAGGAACGGAGGGA | 58.620 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
4492 | 4922 | 6.907212 | CAGTTCATCACGGTGCTAATAATTTC | 59.093 | 38.462 | 2.51 | 0.00 | 0.00 | 2.17 |
4498 | 4928 | 5.815740 | TCACGGTGCTAATAATTTCCTTCTC | 59.184 | 40.000 | 2.51 | 0.00 | 0.00 | 2.87 |
4882 | 5334 | 3.845781 | ATATGGTTCTGAATGTCCGCT | 57.154 | 42.857 | 0.00 | 0.00 | 0.00 | 5.52 |
4883 | 5335 | 4.955811 | ATATGGTTCTGAATGTCCGCTA | 57.044 | 40.909 | 0.00 | 0.00 | 0.00 | 4.26 |
4884 | 5336 | 3.845781 | ATGGTTCTGAATGTCCGCTAT | 57.154 | 42.857 | 0.00 | 0.00 | 0.00 | 2.97 |
4885 | 5337 | 2.905075 | TGGTTCTGAATGTCCGCTATG | 58.095 | 47.619 | 0.00 | 0.00 | 0.00 | 2.23 |
4886 | 5338 | 2.499693 | TGGTTCTGAATGTCCGCTATGA | 59.500 | 45.455 | 0.00 | 0.00 | 0.00 | 2.15 |
4887 | 5339 | 3.055458 | TGGTTCTGAATGTCCGCTATGAA | 60.055 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
4888 | 5340 | 4.130118 | GGTTCTGAATGTCCGCTATGAAT | 58.870 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
4889 | 5341 | 4.024556 | GGTTCTGAATGTCCGCTATGAATG | 60.025 | 45.833 | 0.00 | 0.00 | 0.00 | 2.67 |
4890 | 5342 | 4.406648 | TCTGAATGTCCGCTATGAATGT | 57.593 | 40.909 | 0.00 | 0.00 | 0.00 | 2.71 |
4891 | 5343 | 4.371786 | TCTGAATGTCCGCTATGAATGTC | 58.628 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
4892 | 5344 | 3.466836 | TGAATGTCCGCTATGAATGTCC | 58.533 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
4893 | 5345 | 2.154854 | ATGTCCGCTATGAATGTCCG | 57.845 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4894 | 5346 | 0.529773 | TGTCCGCTATGAATGTCCGC | 60.530 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
4937 | 5389 | 1.079405 | GCGCCACCTACAAGTAGCA | 60.079 | 57.895 | 0.00 | 0.00 | 31.95 | 3.49 |
5002 | 5457 | 4.201970 | GCATATTTTAGCACGTTAGCCCAA | 60.202 | 41.667 | 0.00 | 0.00 | 34.23 | 4.12 |
5015 | 5470 | 5.106317 | ACGTTAGCCCAAGATTTACATGTTG | 60.106 | 40.000 | 2.30 | 0.00 | 34.14 | 3.33 |
5141 | 5596 | 2.766229 | GGCCTCCTCTCCCTCCAC | 60.766 | 72.222 | 0.00 | 0.00 | 0.00 | 4.02 |
5181 | 5636 | 2.657237 | CGCGACCCTCACCTTCTT | 59.343 | 61.111 | 0.00 | 0.00 | 0.00 | 2.52 |
5244 | 5732 | 2.722201 | CGAAACCTAGCCGCCTCCT | 61.722 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
5359 | 5874 | 2.231721 | GTGCCCTTCTCGTCTAAAGACT | 59.768 | 50.000 | 8.41 | 0.00 | 42.66 | 3.24 |
5369 | 5885 | 2.112190 | GTCTAAAGACTGAGGGGAGGG | 58.888 | 57.143 | 2.81 | 0.00 | 41.65 | 4.30 |
5430 | 5946 | 2.909965 | GGCAACGGTTCAAGGGCA | 60.910 | 61.111 | 0.00 | 0.00 | 0.00 | 5.36 |
5553 | 6082 | 1.345715 | CGGATCAGGGCCTAAGGGTT | 61.346 | 60.000 | 5.28 | 0.00 | 34.45 | 4.11 |
5568 | 6097 | 2.722201 | GGTTCGATCTGGGTCGCCT | 61.722 | 63.158 | 0.00 | 0.00 | 41.22 | 5.52 |
5582 | 6111 | 2.434843 | CGCCTCCTGCCATGGACTA | 61.435 | 63.158 | 18.40 | 0.00 | 36.24 | 2.59 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 2.740447 | GACACGATGTTTACCCAGGTTC | 59.260 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
1 | 2 | 2.551504 | GGACACGATGTTTACCCAGGTT | 60.552 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
2 | 3 | 1.002773 | GGACACGATGTTTACCCAGGT | 59.997 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
3 | 4 | 1.677820 | GGGACACGATGTTTACCCAGG | 60.678 | 57.143 | 0.00 | 0.00 | 37.50 | 4.45 |
4 | 5 | 1.677820 | GGGGACACGATGTTTACCCAG | 60.678 | 57.143 | 0.00 | 0.00 | 38.30 | 4.45 |
5 | 6 | 0.325602 | GGGGACACGATGTTTACCCA | 59.674 | 55.000 | 0.00 | 0.00 | 38.30 | 4.51 |
6 | 7 | 0.616891 | AGGGGACACGATGTTTACCC | 59.383 | 55.000 | 13.43 | 13.43 | 38.53 | 3.69 |
7 | 8 | 1.734163 | CAGGGGACACGATGTTTACC | 58.266 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
8 | 9 | 1.084289 | GCAGGGGACACGATGTTTAC | 58.916 | 55.000 | 0.00 | 0.00 | 0.00 | 2.01 |
9 | 10 | 0.035820 | GGCAGGGGACACGATGTTTA | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 2.01 |
10 | 11 | 1.303317 | GGCAGGGGACACGATGTTT | 60.303 | 57.895 | 0.00 | 0.00 | 0.00 | 2.83 |
11 | 12 | 1.779061 | AAGGCAGGGGACACGATGTT | 61.779 | 55.000 | 0.00 | 0.00 | 0.00 | 2.71 |
12 | 13 | 2.185310 | GAAGGCAGGGGACACGATGT | 62.185 | 60.000 | 0.00 | 0.00 | 0.00 | 3.06 |
13 | 14 | 1.450312 | GAAGGCAGGGGACACGATG | 60.450 | 63.158 | 0.00 | 0.00 | 0.00 | 3.84 |
14 | 15 | 1.613630 | AGAAGGCAGGGGACACGAT | 60.614 | 57.895 | 0.00 | 0.00 | 0.00 | 3.73 |
15 | 16 | 2.203788 | AGAAGGCAGGGGACACGA | 60.204 | 61.111 | 0.00 | 0.00 | 0.00 | 4.35 |
16 | 17 | 2.046892 | CAGAAGGCAGGGGACACG | 60.047 | 66.667 | 0.00 | 0.00 | 0.00 | 4.49 |
17 | 18 | 0.690762 | TAACAGAAGGCAGGGGACAC | 59.309 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
18 | 19 | 0.690762 | GTAACAGAAGGCAGGGGACA | 59.309 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
19 | 20 | 0.035343 | GGTAACAGAAGGCAGGGGAC | 60.035 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
20 | 21 | 0.178873 | AGGTAACAGAAGGCAGGGGA | 60.179 | 55.000 | 0.00 | 0.00 | 41.41 | 4.81 |
21 | 22 | 0.698818 | AAGGTAACAGAAGGCAGGGG | 59.301 | 55.000 | 0.00 | 0.00 | 41.41 | 4.79 |
22 | 23 | 1.676014 | CGAAGGTAACAGAAGGCAGGG | 60.676 | 57.143 | 0.00 | 0.00 | 41.41 | 4.45 |
23 | 24 | 1.275291 | TCGAAGGTAACAGAAGGCAGG | 59.725 | 52.381 | 0.00 | 0.00 | 41.41 | 4.85 |
24 | 25 | 2.743636 | TCGAAGGTAACAGAAGGCAG | 57.256 | 50.000 | 0.00 | 0.00 | 41.41 | 4.85 |
25 | 26 | 2.093658 | GGATCGAAGGTAACAGAAGGCA | 60.094 | 50.000 | 0.00 | 0.00 | 41.41 | 4.75 |
26 | 27 | 2.168728 | AGGATCGAAGGTAACAGAAGGC | 59.831 | 50.000 | 0.00 | 0.00 | 41.41 | 4.35 |
27 | 28 | 4.473477 | AAGGATCGAAGGTAACAGAAGG | 57.527 | 45.455 | 0.00 | 0.00 | 41.41 | 3.46 |
28 | 29 | 6.267070 | GTCTAAGGATCGAAGGTAACAGAAG | 58.733 | 44.000 | 0.00 | 0.00 | 41.41 | 2.85 |
29 | 30 | 5.163683 | CGTCTAAGGATCGAAGGTAACAGAA | 60.164 | 44.000 | 0.00 | 0.00 | 41.41 | 3.02 |
30 | 31 | 4.334759 | CGTCTAAGGATCGAAGGTAACAGA | 59.665 | 45.833 | 0.00 | 0.00 | 41.41 | 3.41 |
31 | 32 | 4.599047 | CGTCTAAGGATCGAAGGTAACAG | 58.401 | 47.826 | 0.00 | 0.00 | 41.41 | 3.16 |
32 | 33 | 3.181493 | GCGTCTAAGGATCGAAGGTAACA | 60.181 | 47.826 | 0.00 | 0.00 | 41.41 | 2.41 |
33 | 34 | 3.181493 | TGCGTCTAAGGATCGAAGGTAAC | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 2.50 |
34 | 35 | 3.018856 | TGCGTCTAAGGATCGAAGGTAA | 58.981 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
35 | 36 | 2.357009 | GTGCGTCTAAGGATCGAAGGTA | 59.643 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
36 | 37 | 1.134560 | GTGCGTCTAAGGATCGAAGGT | 59.865 | 52.381 | 0.00 | 0.00 | 0.00 | 3.50 |
37 | 38 | 1.134367 | TGTGCGTCTAAGGATCGAAGG | 59.866 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
38 | 39 | 2.159366 | ACTGTGCGTCTAAGGATCGAAG | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 3.79 |
39 | 40 | 1.816835 | ACTGTGCGTCTAAGGATCGAA | 59.183 | 47.619 | 0.00 | 0.00 | 0.00 | 3.71 |
40 | 41 | 1.460504 | ACTGTGCGTCTAAGGATCGA | 58.539 | 50.000 | 0.00 | 0.00 | 0.00 | 3.59 |
41 | 42 | 2.186076 | GAACTGTGCGTCTAAGGATCG | 58.814 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
42 | 43 | 2.186076 | CGAACTGTGCGTCTAAGGATC | 58.814 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
43 | 44 | 1.135083 | CCGAACTGTGCGTCTAAGGAT | 60.135 | 52.381 | 7.51 | 0.00 | 0.00 | 3.24 |
44 | 45 | 0.242825 | CCGAACTGTGCGTCTAAGGA | 59.757 | 55.000 | 7.51 | 0.00 | 0.00 | 3.36 |
45 | 46 | 0.242825 | TCCGAACTGTGCGTCTAAGG | 59.757 | 55.000 | 7.51 | 0.00 | 0.00 | 2.69 |
46 | 47 | 1.719780 | GTTCCGAACTGTGCGTCTAAG | 59.280 | 52.381 | 7.51 | 0.00 | 0.00 | 2.18 |
47 | 48 | 1.603678 | GGTTCCGAACTGTGCGTCTAA | 60.604 | 52.381 | 7.51 | 0.00 | 0.00 | 2.10 |
48 | 49 | 0.038892 | GGTTCCGAACTGTGCGTCTA | 60.039 | 55.000 | 7.51 | 0.00 | 0.00 | 2.59 |
49 | 50 | 1.300697 | GGTTCCGAACTGTGCGTCT | 60.301 | 57.895 | 7.51 | 0.00 | 0.00 | 4.18 |
50 | 51 | 2.315386 | GGGTTCCGAACTGTGCGTC | 61.315 | 63.158 | 7.51 | 0.00 | 0.00 | 5.19 |
51 | 52 | 2.280592 | GGGTTCCGAACTGTGCGT | 60.281 | 61.111 | 7.51 | 0.00 | 0.00 | 5.24 |
52 | 53 | 3.047877 | GGGGTTCCGAACTGTGCG | 61.048 | 66.667 | 11.03 | 0.00 | 0.00 | 5.34 |
53 | 54 | 1.833787 | TAGGGGGTTCCGAACTGTGC | 61.834 | 60.000 | 11.03 | 0.00 | 41.52 | 4.57 |
54 | 55 | 0.036671 | GTAGGGGGTTCCGAACTGTG | 60.037 | 60.000 | 11.03 | 0.00 | 41.52 | 3.66 |
55 | 56 | 1.196766 | GGTAGGGGGTTCCGAACTGT | 61.197 | 60.000 | 11.03 | 0.00 | 41.52 | 3.55 |
56 | 57 | 1.600638 | GGTAGGGGGTTCCGAACTG | 59.399 | 63.158 | 11.03 | 0.00 | 41.52 | 3.16 |
57 | 58 | 1.986210 | CGGTAGGGGGTTCCGAACT | 60.986 | 63.158 | 11.03 | 0.00 | 46.05 | 3.01 |
58 | 59 | 2.580815 | CGGTAGGGGGTTCCGAAC | 59.419 | 66.667 | 2.37 | 2.37 | 46.05 | 3.95 |
61 | 62 | 1.457079 | ATCTCGGTAGGGGGTTCCG | 60.457 | 63.158 | 0.00 | 0.00 | 44.76 | 4.30 |
62 | 63 | 0.105607 | AGATCTCGGTAGGGGGTTCC | 60.106 | 60.000 | 0.00 | 0.00 | 0.00 | 3.62 |
63 | 64 | 1.041437 | CAGATCTCGGTAGGGGGTTC | 58.959 | 60.000 | 0.00 | 0.00 | 0.00 | 3.62 |
64 | 65 | 1.049289 | GCAGATCTCGGTAGGGGGTT | 61.049 | 60.000 | 0.00 | 0.00 | 0.00 | 4.11 |
65 | 66 | 1.457831 | GCAGATCTCGGTAGGGGGT | 60.458 | 63.158 | 0.00 | 0.00 | 0.00 | 4.95 |
66 | 67 | 2.210711 | GGCAGATCTCGGTAGGGGG | 61.211 | 68.421 | 0.00 | 0.00 | 0.00 | 5.40 |
67 | 68 | 2.565645 | CGGCAGATCTCGGTAGGGG | 61.566 | 68.421 | 0.00 | 0.00 | 0.00 | 4.79 |
68 | 69 | 2.565645 | CCGGCAGATCTCGGTAGGG | 61.566 | 68.421 | 13.39 | 0.00 | 41.23 | 3.53 |
69 | 70 | 3.043419 | CCGGCAGATCTCGGTAGG | 58.957 | 66.667 | 13.39 | 0.67 | 41.23 | 3.18 |
74 | 75 | 0.721718 | GTCAAAACCGGCAGATCTCG | 59.278 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
75 | 76 | 1.464997 | GTGTCAAAACCGGCAGATCTC | 59.535 | 52.381 | 0.00 | 0.00 | 0.00 | 2.75 |
76 | 77 | 1.523758 | GTGTCAAAACCGGCAGATCT | 58.476 | 50.000 | 0.00 | 0.00 | 0.00 | 2.75 |
77 | 78 | 0.521735 | GGTGTCAAAACCGGCAGATC | 59.478 | 55.000 | 0.00 | 0.00 | 0.00 | 2.75 |
78 | 79 | 2.641197 | GGTGTCAAAACCGGCAGAT | 58.359 | 52.632 | 0.00 | 0.00 | 0.00 | 2.90 |
79 | 80 | 4.150994 | GGTGTCAAAACCGGCAGA | 57.849 | 55.556 | 0.00 | 0.00 | 0.00 | 4.26 |
85 | 86 | 0.661020 | CCACTGTCGGTGTCAAAACC | 59.339 | 55.000 | 10.90 | 0.00 | 43.94 | 3.27 |
86 | 87 | 1.375551 | ACCACTGTCGGTGTCAAAAC | 58.624 | 50.000 | 10.90 | 0.00 | 43.94 | 2.43 |
87 | 88 | 2.011222 | GAACCACTGTCGGTGTCAAAA | 58.989 | 47.619 | 10.90 | 0.00 | 43.94 | 2.44 |
88 | 89 | 1.658994 | GAACCACTGTCGGTGTCAAA | 58.341 | 50.000 | 10.90 | 0.00 | 43.94 | 2.69 |
89 | 90 | 0.179067 | GGAACCACTGTCGGTGTCAA | 60.179 | 55.000 | 10.90 | 0.00 | 43.94 | 3.18 |
90 | 91 | 1.444250 | GGAACCACTGTCGGTGTCA | 59.556 | 57.895 | 10.90 | 0.00 | 43.94 | 3.58 |
91 | 92 | 1.663702 | CGGAACCACTGTCGGTGTC | 60.664 | 63.158 | 10.90 | 2.78 | 43.94 | 3.67 |
92 | 93 | 2.420043 | CGGAACCACTGTCGGTGT | 59.580 | 61.111 | 10.90 | 0.00 | 43.94 | 4.16 |
93 | 94 | 3.041940 | GCGGAACCACTGTCGGTG | 61.042 | 66.667 | 4.68 | 4.68 | 44.96 | 4.94 |
94 | 95 | 4.657824 | CGCGGAACCACTGTCGGT | 62.658 | 66.667 | 0.00 | 0.00 | 42.71 | 4.69 |
96 | 97 | 4.657824 | ACCGCGGAACCACTGTCG | 62.658 | 66.667 | 35.90 | 0.00 | 0.00 | 4.35 |
97 | 98 | 3.041940 | CACCGCGGAACCACTGTC | 61.042 | 66.667 | 35.90 | 0.00 | 0.00 | 3.51 |
99 | 100 | 4.988598 | AGCACCGCGGAACCACTG | 62.989 | 66.667 | 35.90 | 19.98 | 0.00 | 3.66 |
100 | 101 | 2.180159 | ATAAGCACCGCGGAACCACT | 62.180 | 55.000 | 35.90 | 17.70 | 0.00 | 4.00 |
350 | 352 | 3.402628 | AGGTTACGACAACAGAGCATT | 57.597 | 42.857 | 0.00 | 0.00 | 0.00 | 3.56 |
352 | 354 | 2.547218 | GGAAGGTTACGACAACAGAGCA | 60.547 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
659 | 664 | 6.232692 | AGTTATTTGGGTAGTTTTGCGAGTA | 58.767 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
708 | 713 | 2.373169 | GCATATGATCTGACCCTCCCAA | 59.627 | 50.000 | 6.97 | 0.00 | 0.00 | 4.12 |
724 | 729 | 9.466497 | TCATTCCTCTTCAAAAGTTTAGCATAT | 57.534 | 29.630 | 0.00 | 0.00 | 0.00 | 1.78 |
725 | 730 | 8.862325 | TCATTCCTCTTCAAAAGTTTAGCATA | 57.138 | 30.769 | 0.00 | 0.00 | 0.00 | 3.14 |
841 | 846 | 2.124695 | GTGGGTGCGGAAGGGATC | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 3.36 |
842 | 847 | 3.728373 | GGTGGGTGCGGAAGGGAT | 61.728 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
846 | 851 | 4.096003 | ATCGGGTGGGTGCGGAAG | 62.096 | 66.667 | 0.00 | 0.00 | 0.00 | 3.46 |
847 | 852 | 4.090588 | GATCGGGTGGGTGCGGAA | 62.091 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1893 | 1913 | 1.619432 | CCCATACCAACAACAGCCCAT | 60.619 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
1896 | 1916 | 0.039035 | TCCCCATACCAACAACAGCC | 59.961 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1927 | 1947 | 7.123847 | TCCCCAAAGTACTAAGAGTTAGATGAC | 59.876 | 40.741 | 0.00 | 0.00 | 36.73 | 3.06 |
2007 | 2027 | 5.173774 | ACACTGTGCTCAAACTGTAAATG | 57.826 | 39.130 | 7.90 | 0.00 | 31.78 | 2.32 |
2015 | 2035 | 4.096732 | AGAAACAACACTGTGCTCAAAC | 57.903 | 40.909 | 7.90 | 0.00 | 35.37 | 2.93 |
2107 | 2128 | 6.456047 | GGTTTCGTCGGATAATTTTAGGTGTC | 60.456 | 42.308 | 0.00 | 0.00 | 0.00 | 3.67 |
2108 | 2129 | 5.352293 | GGTTTCGTCGGATAATTTTAGGTGT | 59.648 | 40.000 | 0.00 | 0.00 | 0.00 | 4.16 |
2158 | 2180 | 1.135972 | CAACAAGAATCTTCGGTGCGG | 60.136 | 52.381 | 0.00 | 0.00 | 0.00 | 5.69 |
2159 | 2181 | 1.531149 | ACAACAAGAATCTTCGGTGCG | 59.469 | 47.619 | 9.34 | 0.00 | 0.00 | 5.34 |
2160 | 2182 | 3.300009 | CAACAACAAGAATCTTCGGTGC | 58.700 | 45.455 | 9.34 | 0.00 | 0.00 | 5.01 |
2216 | 2248 | 8.586273 | CATGCCGTGAATACAAAGAAAATTAAG | 58.414 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
2331 | 2363 | 0.176680 | CTCCATAGTGCCGCTTCAGT | 59.823 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2480 | 2573 | 5.483811 | TGGAAAATAGAACAGACATGCGTA | 58.516 | 37.500 | 0.00 | 0.00 | 0.00 | 4.42 |
2488 | 2581 | 6.881065 | CCTCATTGTCTGGAAAATAGAACAGA | 59.119 | 38.462 | 0.00 | 0.00 | 37.61 | 3.41 |
2489 | 2582 | 6.881065 | TCCTCATTGTCTGGAAAATAGAACAG | 59.119 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
2734 | 2852 | 0.744874 | TACTAGGCGAGTGCACATCC | 59.255 | 55.000 | 21.04 | 16.00 | 45.35 | 3.51 |
3105 | 3298 | 2.561478 | TGTCAGCAGGGAAGGTAAAC | 57.439 | 50.000 | 0.00 | 0.00 | 0.00 | 2.01 |
3124 | 3317 | 9.289782 | AGACTTAGTTGCTAATGAAACTCAATT | 57.710 | 29.630 | 0.00 | 0.00 | 41.02 | 2.32 |
3466 | 3799 | 9.710900 | AGTGGCCTATTTTCTTTTTCTTTTATG | 57.289 | 29.630 | 3.32 | 0.00 | 0.00 | 1.90 |
3558 | 3895 | 4.216257 | CGTCAAACTCTTCCCATCAAATGT | 59.784 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
3611 | 3948 | 3.322828 | TGCTAGAACTACGGAAACTTGGT | 59.677 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
3866 | 4230 | 5.526115 | CACACAAAGATTTCAGCAATGAGT | 58.474 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
4017 | 4381 | 8.065473 | ACAAGTGGATTTTATGTGCAATGATA | 57.935 | 30.769 | 0.00 | 0.00 | 0.00 | 2.15 |
4149 | 4526 | 2.845363 | TTTTGGAACGGAGGGAGTAC | 57.155 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
4150 | 4527 | 4.717778 | TGATATTTTGGAACGGAGGGAGTA | 59.282 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
4151 | 4528 | 3.521937 | TGATATTTTGGAACGGAGGGAGT | 59.478 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
4152 | 4529 | 4.130118 | CTGATATTTTGGAACGGAGGGAG | 58.870 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
4153 | 4530 | 3.521937 | ACTGATATTTTGGAACGGAGGGA | 59.478 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
4154 | 4531 | 3.877508 | GACTGATATTTTGGAACGGAGGG | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
4155 | 4532 | 4.770795 | AGACTGATATTTTGGAACGGAGG | 58.229 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
4156 | 4533 | 6.149474 | ACAAAGACTGATATTTTGGAACGGAG | 59.851 | 38.462 | 2.75 | 0.00 | 36.41 | 4.63 |
4157 | 4534 | 6.001460 | ACAAAGACTGATATTTTGGAACGGA | 58.999 | 36.000 | 2.75 | 0.00 | 36.41 | 4.69 |
4158 | 4535 | 6.254281 | ACAAAGACTGATATTTTGGAACGG | 57.746 | 37.500 | 2.75 | 0.00 | 36.41 | 4.44 |
4159 | 4536 | 8.251750 | TCTACAAAGACTGATATTTTGGAACG | 57.748 | 34.615 | 2.75 | 0.00 | 36.41 | 3.95 |
4160 | 4537 | 9.436957 | TCTCTACAAAGACTGATATTTTGGAAC | 57.563 | 33.333 | 2.75 | 0.00 | 36.41 | 3.62 |
4166 | 4543 | 9.606631 | GTGGAATCTCTACAAAGACTGATATTT | 57.393 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
4167 | 4544 | 8.986991 | AGTGGAATCTCTACAAAGACTGATATT | 58.013 | 33.333 | 0.00 | 0.00 | 29.47 | 1.28 |
4168 | 4545 | 8.546083 | AGTGGAATCTCTACAAAGACTGATAT | 57.454 | 34.615 | 0.00 | 0.00 | 29.47 | 1.63 |
4169 | 4546 | 7.962995 | AGTGGAATCTCTACAAAGACTGATA | 57.037 | 36.000 | 0.00 | 0.00 | 29.47 | 2.15 |
4170 | 4547 | 6.865834 | AGTGGAATCTCTACAAAGACTGAT | 57.134 | 37.500 | 0.00 | 0.00 | 29.47 | 2.90 |
4171 | 4548 | 7.615757 | TCATAGTGGAATCTCTACAAAGACTGA | 59.384 | 37.037 | 0.00 | 0.00 | 29.47 | 3.41 |
4172 | 4549 | 7.776107 | TCATAGTGGAATCTCTACAAAGACTG | 58.224 | 38.462 | 0.00 | 0.00 | 29.47 | 3.51 |
4173 | 4550 | 7.962995 | TCATAGTGGAATCTCTACAAAGACT | 57.037 | 36.000 | 0.00 | 0.00 | 29.47 | 3.24 |
4174 | 4551 | 7.492994 | GGTTCATAGTGGAATCTCTACAAAGAC | 59.507 | 40.741 | 0.00 | 0.00 | 29.47 | 3.01 |
4175 | 4552 | 7.180229 | TGGTTCATAGTGGAATCTCTACAAAGA | 59.820 | 37.037 | 0.00 | 0.00 | 29.47 | 2.52 |
4176 | 4553 | 7.278868 | GTGGTTCATAGTGGAATCTCTACAAAG | 59.721 | 40.741 | 0.00 | 0.00 | 29.47 | 2.77 |
4177 | 4554 | 7.103641 | GTGGTTCATAGTGGAATCTCTACAAA | 58.896 | 38.462 | 0.00 | 0.00 | 29.47 | 2.83 |
4178 | 4555 | 6.212589 | TGTGGTTCATAGTGGAATCTCTACAA | 59.787 | 38.462 | 0.00 | 0.00 | 29.47 | 2.41 |
4179 | 4556 | 5.719563 | TGTGGTTCATAGTGGAATCTCTACA | 59.280 | 40.000 | 0.00 | 0.00 | 29.47 | 2.74 |
4180 | 4557 | 6.222038 | TGTGGTTCATAGTGGAATCTCTAC | 57.778 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
4181 | 4558 | 7.255486 | CGTATGTGGTTCATAGTGGAATCTCTA | 60.255 | 40.741 | 0.00 | 0.00 | 39.36 | 2.43 |
4182 | 4559 | 5.965033 | ATGTGGTTCATAGTGGAATCTCT | 57.035 | 39.130 | 0.00 | 0.00 | 34.67 | 3.10 |
4183 | 4560 | 5.692204 | CGTATGTGGTTCATAGTGGAATCTC | 59.308 | 44.000 | 0.00 | 0.00 | 39.36 | 2.75 |
4184 | 4561 | 5.453339 | CCGTATGTGGTTCATAGTGGAATCT | 60.453 | 44.000 | 0.00 | 0.00 | 39.36 | 2.40 |
4185 | 4562 | 4.750098 | CCGTATGTGGTTCATAGTGGAATC | 59.250 | 45.833 | 0.00 | 0.00 | 39.36 | 2.52 |
4186 | 4563 | 4.407621 | TCCGTATGTGGTTCATAGTGGAAT | 59.592 | 41.667 | 0.00 | 0.00 | 39.60 | 3.01 |
4187 | 4564 | 3.770388 | TCCGTATGTGGTTCATAGTGGAA | 59.230 | 43.478 | 0.00 | 0.00 | 39.60 | 3.53 |
4188 | 4565 | 3.367321 | TCCGTATGTGGTTCATAGTGGA | 58.633 | 45.455 | 0.00 | 0.00 | 39.94 | 4.02 |
4189 | 4566 | 3.812156 | TCCGTATGTGGTTCATAGTGG | 57.188 | 47.619 | 0.00 | 0.00 | 39.36 | 4.00 |
4190 | 4567 | 4.693283 | ACATCCGTATGTGGTTCATAGTG | 58.307 | 43.478 | 0.00 | 0.00 | 44.79 | 2.74 |
4191 | 4568 | 6.665992 | ATACATCCGTATGTGGTTCATAGT | 57.334 | 37.500 | 3.56 | 0.00 | 45.99 | 2.12 |
4192 | 4569 | 9.952188 | CTATATACATCCGTATGTGGTTCATAG | 57.048 | 37.037 | 3.56 | 0.80 | 45.99 | 2.23 |
4193 | 4570 | 9.689501 | TCTATATACATCCGTATGTGGTTCATA | 57.310 | 33.333 | 3.56 | 0.00 | 45.99 | 2.15 |
4194 | 4571 | 8.589701 | TCTATATACATCCGTATGTGGTTCAT | 57.410 | 34.615 | 3.56 | 0.00 | 45.99 | 2.57 |
4195 | 4572 | 8.466798 | CATCTATATACATCCGTATGTGGTTCA | 58.533 | 37.037 | 3.56 | 0.00 | 45.99 | 3.18 |
4196 | 4573 | 7.435488 | GCATCTATATACATCCGTATGTGGTTC | 59.565 | 40.741 | 3.56 | 0.00 | 45.99 | 3.62 |
4197 | 4574 | 7.093509 | TGCATCTATATACATCCGTATGTGGTT | 60.094 | 37.037 | 3.56 | 0.00 | 45.99 | 3.67 |
4198 | 4575 | 6.379988 | TGCATCTATATACATCCGTATGTGGT | 59.620 | 38.462 | 3.56 | 0.00 | 45.99 | 4.16 |
4199 | 4576 | 6.805713 | TGCATCTATATACATCCGTATGTGG | 58.194 | 40.000 | 3.56 | 0.00 | 45.99 | 4.17 |
4200 | 4577 | 8.877808 | AATGCATCTATATACATCCGTATGTG | 57.122 | 34.615 | 3.56 | 0.00 | 45.99 | 3.21 |
4205 | 4582 | 9.809096 | CTCTAAAATGCATCTATATACATCCGT | 57.191 | 33.333 | 0.00 | 0.00 | 0.00 | 4.69 |
4206 | 4583 | 9.809096 | ACTCTAAAATGCATCTATATACATCCG | 57.191 | 33.333 | 0.00 | 0.00 | 0.00 | 4.18 |
4216 | 4593 | 9.534565 | GTGAATCTACACTCTAAAATGCATCTA | 57.465 | 33.333 | 0.00 | 0.00 | 37.73 | 1.98 |
4217 | 4594 | 8.263640 | AGTGAATCTACACTCTAAAATGCATCT | 58.736 | 33.333 | 0.00 | 0.00 | 46.36 | 2.90 |
4218 | 4595 | 8.430801 | AGTGAATCTACACTCTAAAATGCATC | 57.569 | 34.615 | 0.00 | 0.00 | 46.36 | 3.91 |
4231 | 4608 | 6.017933 | CGAAGCAAAATGAGTGAATCTACAC | 58.982 | 40.000 | 0.00 | 0.00 | 40.60 | 2.90 |
4232 | 4609 | 5.700832 | ACGAAGCAAAATGAGTGAATCTACA | 59.299 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4233 | 4610 | 6.170675 | ACGAAGCAAAATGAGTGAATCTAC | 57.829 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
4234 | 4611 | 7.549134 | ACATACGAAGCAAAATGAGTGAATCTA | 59.451 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
4235 | 4612 | 6.372659 | ACATACGAAGCAAAATGAGTGAATCT | 59.627 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
4236 | 4613 | 6.546395 | ACATACGAAGCAAAATGAGTGAATC | 58.454 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
4237 | 4614 | 6.500684 | ACATACGAAGCAAAATGAGTGAAT | 57.499 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
4238 | 4615 | 5.940192 | ACATACGAAGCAAAATGAGTGAA | 57.060 | 34.783 | 0.00 | 0.00 | 0.00 | 3.18 |
4239 | 4616 | 6.163476 | ACTACATACGAAGCAAAATGAGTGA | 58.837 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4240 | 4617 | 6.408858 | ACTACATACGAAGCAAAATGAGTG | 57.591 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
4241 | 4618 | 5.581085 | GGACTACATACGAAGCAAAATGAGT | 59.419 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4242 | 4619 | 5.580691 | TGGACTACATACGAAGCAAAATGAG | 59.419 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
4243 | 4620 | 5.483811 | TGGACTACATACGAAGCAAAATGA | 58.516 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
4244 | 4621 | 5.794687 | TGGACTACATACGAAGCAAAATG | 57.205 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
4245 | 4622 | 7.272978 | ACTATGGACTACATACGAAGCAAAAT | 58.727 | 34.615 | 0.00 | 0.00 | 41.03 | 1.82 |
4246 | 4623 | 6.636705 | ACTATGGACTACATACGAAGCAAAA | 58.363 | 36.000 | 0.00 | 0.00 | 41.03 | 2.44 |
4247 | 4624 | 6.216801 | ACTATGGACTACATACGAAGCAAA | 57.783 | 37.500 | 0.00 | 0.00 | 41.03 | 3.68 |
4248 | 4625 | 5.847111 | ACTATGGACTACATACGAAGCAA | 57.153 | 39.130 | 0.00 | 0.00 | 41.03 | 3.91 |
4249 | 4626 | 6.293698 | TCTACTATGGACTACATACGAAGCA | 58.706 | 40.000 | 0.00 | 0.00 | 41.03 | 3.91 |
4250 | 4627 | 6.798315 | TCTACTATGGACTACATACGAAGC | 57.202 | 41.667 | 0.00 | 0.00 | 41.03 | 3.86 |
4251 | 4628 | 9.221933 | AGATTCTACTATGGACTACATACGAAG | 57.778 | 37.037 | 0.00 | 0.00 | 41.03 | 3.79 |
4252 | 4629 | 9.217278 | GAGATTCTACTATGGACTACATACGAA | 57.783 | 37.037 | 0.00 | 0.00 | 41.03 | 3.85 |
4253 | 4630 | 8.595421 | AGAGATTCTACTATGGACTACATACGA | 58.405 | 37.037 | 0.00 | 0.00 | 41.03 | 3.43 |
4254 | 4631 | 8.780846 | AGAGATTCTACTATGGACTACATACG | 57.219 | 38.462 | 0.00 | 0.00 | 41.03 | 3.06 |
4280 | 4657 | 7.985752 | CCTCCGTTCCTAAATATAAGTCTTTGT | 59.014 | 37.037 | 0.00 | 0.00 | 0.00 | 2.83 |
4281 | 4658 | 7.441458 | CCCTCCGTTCCTAAATATAAGTCTTTG | 59.559 | 40.741 | 0.00 | 0.00 | 0.00 | 2.77 |
4282 | 4659 | 7.346436 | TCCCTCCGTTCCTAAATATAAGTCTTT | 59.654 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
4283 | 4660 | 6.842807 | TCCCTCCGTTCCTAAATATAAGTCTT | 59.157 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
4284 | 4661 | 6.379579 | TCCCTCCGTTCCTAAATATAAGTCT | 58.620 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
4285 | 4662 | 6.267242 | ACTCCCTCCGTTCCTAAATATAAGTC | 59.733 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
4286 | 4663 | 6.141790 | ACTCCCTCCGTTCCTAAATATAAGT | 58.858 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4287 | 4664 | 6.667558 | ACTCCCTCCGTTCCTAAATATAAG | 57.332 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
4291 | 4668 | 9.827198 | TTTATATACTCCCTCCGTTCCTAAATA | 57.173 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
4292 | 4669 | 8.731591 | TTTATATACTCCCTCCGTTCCTAAAT | 57.268 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
4293 | 4670 | 8.591072 | CATTTATATACTCCCTCCGTTCCTAAA | 58.409 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
4294 | 4671 | 7.310237 | GCATTTATATACTCCCTCCGTTCCTAA | 60.310 | 40.741 | 0.00 | 0.00 | 0.00 | 2.69 |
4295 | 4672 | 6.154021 | GCATTTATATACTCCCTCCGTTCCTA | 59.846 | 42.308 | 0.00 | 0.00 | 0.00 | 2.94 |
4296 | 4673 | 5.046520 | GCATTTATATACTCCCTCCGTTCCT | 60.047 | 44.000 | 0.00 | 0.00 | 0.00 | 3.36 |
4297 | 4674 | 5.176592 | GCATTTATATACTCCCTCCGTTCC | 58.823 | 45.833 | 0.00 | 0.00 | 0.00 | 3.62 |
4298 | 4675 | 5.790593 | TGCATTTATATACTCCCTCCGTTC | 58.209 | 41.667 | 0.00 | 0.00 | 0.00 | 3.95 |
4299 | 4676 | 5.818678 | TGCATTTATATACTCCCTCCGTT | 57.181 | 39.130 | 0.00 | 0.00 | 0.00 | 4.44 |
4300 | 4677 | 6.013725 | TCAATGCATTTATATACTCCCTCCGT | 60.014 | 38.462 | 9.83 | 0.00 | 0.00 | 4.69 |
4301 | 4678 | 6.406370 | TCAATGCATTTATATACTCCCTCCG | 58.594 | 40.000 | 9.83 | 0.00 | 0.00 | 4.63 |
4302 | 4679 | 7.885399 | AGTTCAATGCATTTATATACTCCCTCC | 59.115 | 37.037 | 9.83 | 0.00 | 0.00 | 4.30 |
4303 | 4680 | 8.854614 | AGTTCAATGCATTTATATACTCCCTC | 57.145 | 34.615 | 9.83 | 0.00 | 0.00 | 4.30 |
4368 | 4745 | 3.930336 | TGGTGAAGCAGAAGTAGTGATG | 58.070 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
4369 | 4746 | 4.511527 | CATGGTGAAGCAGAAGTAGTGAT | 58.488 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
4466 | 4896 | 2.093306 | TTAGCACCGTGATGAACTGG | 57.907 | 50.000 | 1.65 | 0.00 | 0.00 | 4.00 |
4492 | 4922 | 6.830324 | TCCATCCTGAACAATTAATGAGAAGG | 59.170 | 38.462 | 0.00 | 0.00 | 0.00 | 3.46 |
4498 | 4928 | 8.689061 | TGATTCTTCCATCCTGAACAATTAATG | 58.311 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
4882 | 5334 | 5.469760 | CACCATTTCATAGCGGACATTCATA | 59.530 | 40.000 | 0.00 | 0.00 | 0.00 | 2.15 |
4883 | 5335 | 4.276678 | CACCATTTCATAGCGGACATTCAT | 59.723 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
4884 | 5336 | 3.627123 | CACCATTTCATAGCGGACATTCA | 59.373 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
4885 | 5337 | 3.876914 | TCACCATTTCATAGCGGACATTC | 59.123 | 43.478 | 0.00 | 0.00 | 0.00 | 2.67 |
4886 | 5338 | 3.884895 | TCACCATTTCATAGCGGACATT | 58.115 | 40.909 | 0.00 | 0.00 | 0.00 | 2.71 |
4887 | 5339 | 3.558931 | TCACCATTTCATAGCGGACAT | 57.441 | 42.857 | 0.00 | 0.00 | 0.00 | 3.06 |
4888 | 5340 | 3.466836 | GATCACCATTTCATAGCGGACA | 58.533 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
4889 | 5341 | 2.476619 | CGATCACCATTTCATAGCGGAC | 59.523 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4890 | 5342 | 2.364002 | TCGATCACCATTTCATAGCGGA | 59.636 | 45.455 | 0.00 | 0.00 | 0.00 | 5.54 |
4891 | 5343 | 2.476619 | GTCGATCACCATTTCATAGCGG | 59.523 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
4892 | 5344 | 2.153817 | CGTCGATCACCATTTCATAGCG | 59.846 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
4893 | 5345 | 2.096713 | GCGTCGATCACCATTTCATAGC | 60.097 | 50.000 | 0.00 | 0.00 | 0.00 | 2.97 |
4894 | 5346 | 3.123050 | TGCGTCGATCACCATTTCATAG | 58.877 | 45.455 | 0.00 | 0.00 | 0.00 | 2.23 |
4990 | 5442 | 4.394920 | ACATGTAAATCTTGGGCTAACGTG | 59.605 | 41.667 | 0.00 | 0.00 | 0.00 | 4.49 |
5181 | 5636 | 2.547595 | CCCTTCCCTCCCTTGGCAA | 61.548 | 63.158 | 0.00 | 0.00 | 0.00 | 4.52 |
5224 | 5701 | 3.735037 | GAGGCGGCTAGGTTTCGGG | 62.735 | 68.421 | 13.24 | 0.00 | 0.00 | 5.14 |
5244 | 5732 | 2.363795 | ATCCTTCGGAGTCGCCCA | 60.364 | 61.111 | 0.00 | 0.00 | 34.05 | 5.36 |
5328 | 5843 | 4.265056 | AAGGGCACGACCACCACC | 62.265 | 66.667 | 0.00 | 0.00 | 42.05 | 4.61 |
5329 | 5844 | 2.668550 | GAAGGGCACGACCACCAC | 60.669 | 66.667 | 0.00 | 0.00 | 42.05 | 4.16 |
5330 | 5845 | 2.847234 | AGAAGGGCACGACCACCA | 60.847 | 61.111 | 0.00 | 0.00 | 42.05 | 4.17 |
5331 | 5846 | 2.047179 | GAGAAGGGCACGACCACC | 60.047 | 66.667 | 0.00 | 0.00 | 42.05 | 4.61 |
5332 | 5847 | 2.432628 | CGAGAAGGGCACGACCAC | 60.433 | 66.667 | 0.00 | 0.00 | 42.05 | 4.16 |
5333 | 5848 | 2.915659 | ACGAGAAGGGCACGACCA | 60.916 | 61.111 | 0.00 | 0.00 | 42.05 | 4.02 |
5334 | 5849 | 1.310933 | TAGACGAGAAGGGCACGACC | 61.311 | 60.000 | 0.00 | 0.00 | 34.56 | 4.79 |
5335 | 5850 | 0.524862 | TTAGACGAGAAGGGCACGAC | 59.475 | 55.000 | 0.00 | 0.00 | 34.56 | 4.34 |
5336 | 5851 | 1.201647 | CTTTAGACGAGAAGGGCACGA | 59.798 | 52.381 | 0.00 | 0.00 | 34.56 | 4.35 |
5337 | 5852 | 1.201647 | TCTTTAGACGAGAAGGGCACG | 59.798 | 52.381 | 0.00 | 0.00 | 36.62 | 5.34 |
5338 | 5853 | 2.608268 | GTCTTTAGACGAGAAGGGCAC | 58.392 | 52.381 | 0.00 | 0.00 | 35.12 | 5.01 |
5359 | 5874 | 3.940480 | TGCACTCCCCTCCCCTCA | 61.940 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
5525 | 6054 | 2.501128 | CCTGATCCGACGCACCAT | 59.499 | 61.111 | 0.00 | 0.00 | 0.00 | 3.55 |
5553 | 6082 | 2.833582 | GGAGGCGACCCAGATCGA | 60.834 | 66.667 | 0.00 | 0.00 | 45.13 | 3.59 |
5568 | 6097 | 2.357050 | CCACAAATAGTCCATGGCAGGA | 60.357 | 50.000 | 6.96 | 0.58 | 34.64 | 3.86 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.