Multiple sequence alignment - TraesCS3B01G254400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G254400 chr3B 100.000 5883 0 0 1 5883 409877673 409871791 0.000000e+00 10864.0
1 TraesCS3B01G254400 chr3A 94.274 3423 104 31 2499 5883 420806074 420802706 0.000000e+00 5151.0
2 TraesCS3B01G254400 chr3A 93.035 1608 59 21 772 2337 420807670 420806074 0.000000e+00 2300.0
3 TraesCS3B01G254400 chr3D 94.175 3279 108 28 2642 5883 311640429 311643661 0.000000e+00 4920.0
4 TraesCS3B01G254400 chr3D 93.720 1640 76 13 716 2337 311638509 311640139 0.000000e+00 2433.0
5 TraesCS3B01G254400 chr3D 89.628 511 39 8 2 507 311635900 311636401 6.430000e-179 638.0
6 TraesCS3B01G254400 chr3D 95.205 146 7 0 2499 2644 311640139 311640284 1.270000e-56 231.0
7 TraesCS3B01G254400 chr3D 93.443 61 1 3 623 682 153507742 153507684 2.920000e-13 87.9
8 TraesCS3B01G254400 chr7B 88.608 474 19 10 5391 5864 688573333 688572895 1.440000e-150 544.0
9 TraesCS3B01G254400 chr7B 93.407 182 9 3 2323 2501 588861666 588861847 3.500000e-67 267.0
10 TraesCS3B01G254400 chr7B 93.443 61 3 1 665 724 517101172 517101112 8.120000e-14 89.8
11 TraesCS3B01G254400 chr1D 95.429 175 7 1 2327 2500 238940206 238940380 1.610000e-70 278.0
12 TraesCS3B01G254400 chr7A 94.944 178 6 3 2331 2506 62993149 62992973 5.810000e-70 276.0
13 TraesCS3B01G254400 chr7A 84.000 100 14 2 623 720 126943086 126942987 1.750000e-15 95.3
14 TraesCS3B01G254400 chr7D 96.407 167 5 1 2336 2501 192936019 192936185 2.090000e-69 274.0
15 TraesCS3B01G254400 chr7D 92.308 65 4 1 665 728 70364119 70364055 2.260000e-14 91.6
16 TraesCS3B01G254400 chr4D 94.886 176 8 1 2339 2513 93338204 93338029 2.090000e-69 274.0
17 TraesCS3B01G254400 chr5B 94.857 175 8 1 2336 2509 662913928 662914102 7.510000e-69 272.0
18 TraesCS3B01G254400 chr5B 93.600 125 6 2 509 632 45271441 45271564 1.010000e-42 185.0
19 TraesCS3B01G254400 chr5B 92.742 124 8 1 508 631 399658396 399658274 1.680000e-40 178.0
20 TraesCS3B01G254400 chr5B 92.063 63 5 0 647 709 615781370 615781308 8.120000e-14 89.8
21 TraesCS3B01G254400 chr5B 87.500 64 6 2 673 735 595294830 595294768 8.180000e-09 73.1
22 TraesCS3B01G254400 chr5B 85.714 63 7 2 665 726 541162584 541162645 1.370000e-06 65.8
23 TraesCS3B01G254400 chr1A 91.795 195 13 3 2315 2507 513213331 513213138 9.720000e-68 268.0
24 TraesCS3B01G254400 chr1A 91.935 62 3 2 665 724 566481117 566481178 1.050000e-12 86.1
25 TraesCS3B01G254400 chr6A 92.553 188 10 4 2315 2500 105041890 105042075 3.500000e-67 267.0
26 TraesCS3B01G254400 chr4A 88.679 212 16 7 2301 2506 690408891 690409100 9.790000e-63 252.0
27 TraesCS3B01G254400 chrUn 94.958 119 6 0 510 628 141680909 141680791 2.800000e-43 187.0
28 TraesCS3B01G254400 chrUn 91.667 96 7 1 626 720 262808885 262808790 1.330000e-26 132.0
29 TraesCS3B01G254400 chr6B 95.000 120 5 1 512 631 119526809 119526927 2.800000e-43 187.0
30 TraesCS3B01G254400 chr6B 92.188 128 7 3 503 628 314546978 314547104 1.680000e-40 178.0
31 TraesCS3B01G254400 chr6B 98.077 52 1 0 626 677 509494530 509494581 2.260000e-14 91.6
32 TraesCS3B01G254400 chr6B 94.340 53 2 1 665 716 696026368 696026420 4.890000e-11 80.5
33 TraesCS3B01G254400 chr5D 92.913 127 8 1 505 631 53583245 53583120 3.620000e-42 183.0
34 TraesCS3B01G254400 chr5D 91.304 92 7 1 626 716 557210981 557210890 2.230000e-24 124.0
35 TraesCS3B01G254400 chr6D 94.167 120 6 1 512 631 141446536 141446418 1.300000e-41 182.0
36 TraesCS3B01G254400 chr2D 91.538 130 8 3 503 631 87407355 87407482 6.060000e-40 176.0
37 TraesCS3B01G254400 chr2D 85.185 162 18 3 512 667 639967526 639967687 1.700000e-35 161.0
38 TraesCS3B01G254400 chr2D 94.828 58 2 1 616 672 310724879 310724822 8.120000e-14 89.8
39 TraesCS3B01G254400 chr4B 86.957 92 10 2 627 716 249801135 249801226 1.040000e-17 102.0
40 TraesCS3B01G254400 chr4B 89.706 68 4 3 665 731 135218158 135218223 3.780000e-12 84.2
41 TraesCS3B01G254400 chr2A 90.769 65 2 1 626 690 613176078 613176018 3.780000e-12 84.2
42 TraesCS3B01G254400 chr2B 89.231 65 5 2 673 736 66994761 66994824 4.890000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G254400 chr3B 409871791 409877673 5882 True 10864.0 10864 100.0000 1 5883 1 chr3B.!!$R1 5882
1 TraesCS3B01G254400 chr3A 420802706 420807670 4964 True 3725.5 5151 93.6545 772 5883 2 chr3A.!!$R1 5111
2 TraesCS3B01G254400 chr3D 311635900 311643661 7761 False 2055.5 4920 93.1820 2 5883 4 chr3D.!!$F1 5881

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
985 2894 0.248377 CAGATAAGCAAAGCAGCGCC 60.248 55.000 2.29 0.0 40.15 6.53 F
1588 3521 0.670239 TCGCTCAAGATTCTGCGCAA 60.670 50.000 13.05 0.0 46.73 4.85 F
1904 3865 1.137513 GAACTCACGGAACTTGTCGG 58.862 55.000 0.00 0.0 0.00 4.79 F
2443 4405 1.818674 GATTCACCCATTTTGCTCCGT 59.181 47.619 0.00 0.0 0.00 4.69 F
3208 5317 0.679505 GGCTGGTGTGTCTAGTGTCA 59.320 55.000 0.00 0.0 0.00 3.58 F
3227 5336 0.755327 AACCAGGTTGGAGTTGCACC 60.755 55.000 3.18 0.0 40.96 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2083 4045 0.177604 ATCAGCTAGCAGTCAGGCAC 59.822 55.0 18.83 0.00 35.83 5.01 R
3186 5295 0.392706 CACTAGACACACCAGCCACA 59.607 55.0 0.00 0.00 0.00 4.17 R
3208 5317 0.755327 GGTGCAACTCCAACCTGGTT 60.755 55.0 6.18 6.18 39.03 3.67 R
4154 6267 1.927487 TGAATTCCTTGCACAGCCAT 58.073 45.0 2.27 0.00 0.00 4.40 R
4711 6844 0.313043 CAGCTGCTTTCACAACCCTG 59.687 55.0 0.00 0.00 0.00 4.45 R
5099 7241 6.142818 TGAACAACCCACTTGAATAAACTG 57.857 37.5 0.00 0.00 33.59 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 9.487790 ACTTGATAATGTGGTAAAAATTGTTGG 57.512 29.630 0.00 0.00 0.00 3.77
96 97 9.984190 GGTTAAACCTGGTAAACATAAATTTGA 57.016 29.630 20.29 0.00 34.73 2.69
118 119 7.870509 TGAAATGATGAGAGAACCCATTAAG 57.129 36.000 0.00 0.00 0.00 1.85
121 122 7.872113 AATGATGAGAGAACCCATTAAGAAC 57.128 36.000 0.00 0.00 0.00 3.01
191 193 7.099764 GCATAGTATCATGCCTAGCTAAAAGA 58.900 38.462 0.00 0.00 44.55 2.52
213 215 7.568199 AGACATTAAGTAAAGTGCTTGTTGT 57.432 32.000 0.00 0.00 0.00 3.32
273 275 6.094048 GTGTCAATATGGTTGTTGCTACTGAT 59.906 38.462 0.00 0.00 0.00 2.90
276 278 7.279981 GTCAATATGGTTGTTGCTACTGATGTA 59.720 37.037 0.00 0.00 0.00 2.29
286 288 8.424274 TGTTGCTACTGATGTAGTCATATTTG 57.576 34.615 0.00 0.00 45.84 2.32
339 341 4.270245 TCCTTTGGGATGTTGCAATTTC 57.730 40.909 0.59 2.52 36.57 2.17
426 432 5.598005 ACTGGAATGTGACCAATTTCTGAAA 59.402 36.000 5.15 5.15 36.95 2.69
444 450 9.921637 TTTCTGAAATTTTCACAAAGTACAGTT 57.078 25.926 7.74 0.00 35.46 3.16
507 513 7.515957 TTAAAGTTACAGAAGTACGCATAGC 57.484 36.000 0.00 0.00 0.00 2.97
510 516 5.661458 AGTTACAGAAGTACGCATAGCAAT 58.339 37.500 0.00 0.00 0.00 3.56
511 517 6.106673 AGTTACAGAAGTACGCATAGCAATT 58.893 36.000 0.00 0.00 0.00 2.32
512 518 7.262772 AGTTACAGAAGTACGCATAGCAATTA 58.737 34.615 0.00 0.00 0.00 1.40
514 520 5.661458 ACAGAAGTACGCATAGCAATTACT 58.339 37.500 0.00 0.00 0.00 2.24
515 521 5.749109 ACAGAAGTACGCATAGCAATTACTC 59.251 40.000 0.00 0.00 0.00 2.59
517 523 3.991367 AGTACGCATAGCAATTACTCCC 58.009 45.455 0.00 0.00 0.00 4.30
518 524 3.641906 AGTACGCATAGCAATTACTCCCT 59.358 43.478 0.00 0.00 0.00 4.20
520 526 2.700897 ACGCATAGCAATTACTCCCTCT 59.299 45.455 0.00 0.00 0.00 3.69
522 528 3.493350 CGCATAGCAATTACTCCCTCTGT 60.493 47.826 0.00 0.00 0.00 3.41
523 529 4.455606 GCATAGCAATTACTCCCTCTGTT 58.544 43.478 0.00 0.00 0.00 3.16
524 530 4.513318 GCATAGCAATTACTCCCTCTGTTC 59.487 45.833 0.00 0.00 0.00 3.18
525 531 3.636153 AGCAATTACTCCCTCTGTTCC 57.364 47.619 0.00 0.00 0.00 3.62
527 533 4.362677 AGCAATTACTCCCTCTGTTCCTA 58.637 43.478 0.00 0.00 0.00 2.94
528 534 4.783227 AGCAATTACTCCCTCTGTTCCTAA 59.217 41.667 0.00 0.00 0.00 2.69
529 535 5.250774 AGCAATTACTCCCTCTGTTCCTAAA 59.749 40.000 0.00 0.00 0.00 1.85
530 536 6.069381 AGCAATTACTCCCTCTGTTCCTAAAT 60.069 38.462 0.00 0.00 0.00 1.40
531 537 7.127339 AGCAATTACTCCCTCTGTTCCTAAATA 59.873 37.037 0.00 0.00 0.00 1.40
532 538 7.939588 GCAATTACTCCCTCTGTTCCTAAATAT 59.060 37.037 0.00 0.00 0.00 1.28
536 542 9.725206 TTACTCCCTCTGTTCCTAAATATAAGT 57.275 33.333 0.00 0.00 0.00 2.24
537 543 8.252624 ACTCCCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
538 544 8.068733 ACTCCCTCTGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 0.00 3.24
539 545 8.855804 TCCCTCTGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
540 546 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
541 547 9.907229 CCCTCTGTTCCTAAATATAAGTCTTTT 57.093 33.333 0.00 0.00 0.00 2.27
560 566 9.660180 AGTCTTTTAAGAGATTTCACTATGGAC 57.340 33.333 0.00 0.00 35.32 4.02
561 567 9.660180 GTCTTTTAAGAGATTTCACTATGGACT 57.340 33.333 0.00 0.00 35.32 3.85
570 576 6.776116 AGATTTCACTATGGACTACATACGGA 59.224 38.462 0.00 0.00 41.03 4.69
572 578 3.819337 TCACTATGGACTACATACGGAGC 59.181 47.826 0.00 0.00 41.03 4.70
573 579 3.568430 CACTATGGACTACATACGGAGCA 59.432 47.826 0.00 0.00 41.03 4.26
575 581 4.647853 ACTATGGACTACATACGGAGCAAA 59.352 41.667 0.00 0.00 41.03 3.68
577 583 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
578 584 5.601583 TGGACTACATACGGAGCAAAATA 57.398 39.130 0.00 0.00 0.00 1.40
579 585 5.979993 TGGACTACATACGGAGCAAAATAA 58.020 37.500 0.00 0.00 0.00 1.40
580 586 6.408035 TGGACTACATACGGAGCAAAATAAA 58.592 36.000 0.00 0.00 0.00 1.40
581 587 7.051623 TGGACTACATACGGAGCAAAATAAAT 58.948 34.615 0.00 0.00 0.00 1.40
582 588 7.011950 TGGACTACATACGGAGCAAAATAAATG 59.988 37.037 0.00 0.00 0.00 2.32
583 589 7.225931 GGACTACATACGGAGCAAAATAAATGA 59.774 37.037 0.00 0.00 0.00 2.57
584 590 8.500753 ACTACATACGGAGCAAAATAAATGAA 57.499 30.769 0.00 0.00 0.00 2.57
586 592 9.599322 CTACATACGGAGCAAAATAAATGAATC 57.401 33.333 0.00 0.00 0.00 2.52
588 594 5.811399 ACGGAGCAAAATAAATGAATCGA 57.189 34.783 0.00 0.00 0.00 3.59
589 595 5.569413 ACGGAGCAAAATAAATGAATCGAC 58.431 37.500 0.00 0.00 0.00 4.20
590 596 5.123186 ACGGAGCAAAATAAATGAATCGACA 59.877 36.000 0.00 0.00 0.00 4.35
591 597 5.452302 CGGAGCAAAATAAATGAATCGACAC 59.548 40.000 0.00 0.00 0.00 3.67
592 598 6.555315 GGAGCAAAATAAATGAATCGACACT 58.445 36.000 0.00 0.00 0.00 3.55
593 599 6.688813 GGAGCAAAATAAATGAATCGACACTC 59.311 38.462 0.00 0.00 0.00 3.51
595 601 8.492673 AGCAAAATAAATGAATCGACACTCTA 57.507 30.769 0.00 0.00 0.00 2.43
596 602 8.946085 AGCAAAATAAATGAATCGACACTCTAA 58.054 29.630 0.00 0.00 0.00 2.10
597 603 9.554724 GCAAAATAAATGAATCGACACTCTAAA 57.445 29.630 0.00 0.00 0.00 1.85
646 652 6.838382 ACTTTAGTACAAAGTTGGGTCATCT 58.162 36.000 14.04 0.00 37.18 2.90
654 660 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
655 661 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
656 662 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
657 663 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
658 664 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
660 666 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
661 667 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
663 669 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
665 671 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
666 672 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
667 673 4.778958 TCTATTTTGGAACGGAGGGAGTAA 59.221 41.667 0.00 0.00 0.00 2.24
668 674 4.586306 ATTTTGGAACGGAGGGAGTAAT 57.414 40.909 0.00 0.00 0.00 1.89
670 676 4.376225 TTTGGAACGGAGGGAGTAATTT 57.624 40.909 0.00 0.00 0.00 1.82
671 677 3.343941 TGGAACGGAGGGAGTAATTTG 57.656 47.619 0.00 0.00 0.00 2.32
672 678 2.640826 TGGAACGGAGGGAGTAATTTGT 59.359 45.455 0.00 0.00 0.00 2.83
673 679 3.839490 TGGAACGGAGGGAGTAATTTGTA 59.161 43.478 0.00 0.00 0.00 2.41
675 681 4.081254 GGAACGGAGGGAGTAATTTGTAGT 60.081 45.833 0.00 0.00 0.00 2.73
677 683 3.197116 ACGGAGGGAGTAATTTGTAGTGG 59.803 47.826 0.00 0.00 0.00 4.00
678 684 3.449737 CGGAGGGAGTAATTTGTAGTGGA 59.550 47.826 0.00 0.00 0.00 4.02
680 686 5.396436 CGGAGGGAGTAATTTGTAGTGGAAT 60.396 44.000 0.00 0.00 0.00 3.01
681 687 6.056236 GGAGGGAGTAATTTGTAGTGGAATC 58.944 44.000 0.00 0.00 0.00 2.52
682 688 6.126739 GGAGGGAGTAATTTGTAGTGGAATCT 60.127 42.308 0.00 0.00 0.00 2.40
683 689 6.890293 AGGGAGTAATTTGTAGTGGAATCTC 58.110 40.000 0.00 0.00 0.00 2.75
684 690 6.674419 AGGGAGTAATTTGTAGTGGAATCTCT 59.326 38.462 0.00 0.00 0.00 3.10
685 691 7.844779 AGGGAGTAATTTGTAGTGGAATCTCTA 59.155 37.037 0.00 0.00 0.00 2.43
686 692 8.483758 GGGAGTAATTTGTAGTGGAATCTCTAA 58.516 37.037 0.00 0.00 0.00 2.10
687 693 9.886132 GGAGTAATTTGTAGTGGAATCTCTAAA 57.114 33.333 0.00 0.00 0.00 1.85
694 700 9.847224 TTTGTAGTGGAATCTCTAAAAAGACTT 57.153 29.630 0.00 0.00 28.58 3.01
711 717 8.515695 AAAAGACTTATATTTAAGAACGGGGG 57.484 34.615 9.58 0.00 38.56 5.40
712 718 7.441903 AAGACTTATATTTAAGAACGGGGGA 57.558 36.000 9.58 0.00 38.56 4.81
713 719 7.063934 AGACTTATATTTAAGAACGGGGGAG 57.936 40.000 9.58 0.00 38.56 4.30
714 720 6.614496 AGACTTATATTTAAGAACGGGGGAGT 59.386 38.462 9.58 0.00 38.56 3.85
724 2629 4.812653 AGAACGGGGGAGTACATAACTAT 58.187 43.478 0.00 0.00 39.07 2.12
727 2632 3.117016 ACGGGGGAGTACATAACTATGGA 60.117 47.826 0.00 0.00 39.07 3.41
728 2633 4.094476 CGGGGGAGTACATAACTATGGAT 58.906 47.826 0.00 0.00 39.07 3.41
733 2638 6.935208 GGGGAGTACATAACTATGGATTGTTC 59.065 42.308 0.00 0.00 39.07 3.18
743 2648 7.781324 AACTATGGATTGTTCTGGTTTTGAT 57.219 32.000 0.00 0.00 0.00 2.57
744 2649 8.877864 AACTATGGATTGTTCTGGTTTTGATA 57.122 30.769 0.00 0.00 0.00 2.15
747 2652 6.817765 TGGATTGTTCTGGTTTTGATAGAC 57.182 37.500 0.00 0.00 0.00 2.59
750 2655 6.431234 GGATTGTTCTGGTTTTGATAGACTGT 59.569 38.462 0.00 0.00 0.00 3.55
751 2656 7.040409 GGATTGTTCTGGTTTTGATAGACTGTT 60.040 37.037 0.00 0.00 0.00 3.16
755 2660 7.771361 TGTTCTGGTTTTGATAGACTGTTGTTA 59.229 33.333 0.00 0.00 0.00 2.41
800 2706 3.371595 GGCCAGTTCTTTCTAGCCCAATA 60.372 47.826 0.00 0.00 36.49 1.90
865 2771 2.851805 GCTTATTTCCAAAGCCTCGG 57.148 50.000 0.00 0.00 42.85 4.63
886 2793 3.826729 GGATAAACCACAAAGAACTGGCT 59.173 43.478 0.00 0.00 38.79 4.75
913 2822 2.520968 GTCAGTTGTTGGGCCCCT 59.479 61.111 22.27 5.28 0.00 4.79
985 2894 0.248377 CAGATAAGCAAAGCAGCGCC 60.248 55.000 2.29 0.00 40.15 6.53
1158 3091 6.466759 GCTCTAGTATTCCTTACTCTCCCTCT 60.467 46.154 0.00 0.00 40.41 3.69
1436 3369 1.298413 CTCGGACATACTCACGCCG 60.298 63.158 0.00 0.00 43.11 6.46
1588 3521 0.670239 TCGCTCAAGATTCTGCGCAA 60.670 50.000 13.05 0.00 46.73 4.85
1642 3575 4.803613 GCTATGAAAGGTTAAAATTGCCGG 59.196 41.667 0.00 0.00 0.00 6.13
1643 3576 3.669251 TGAAAGGTTAAAATTGCCGGG 57.331 42.857 2.18 0.00 0.00 5.73
1644 3577 2.966516 TGAAAGGTTAAAATTGCCGGGT 59.033 40.909 2.18 0.00 0.00 5.28
1675 3609 9.646427 TTTTGTAATAAATTAGCATTGGTGGTC 57.354 29.630 0.00 0.00 37.28 4.02
1732 3693 4.453819 GCATCATAGGAATCAAGTAGTGGC 59.546 45.833 0.00 0.00 0.00 5.01
1774 3735 6.655078 AATGGTACTATGGGATGAAATTGC 57.345 37.500 0.00 0.00 0.00 3.56
1846 3807 4.080919 AGAGCTATTGTGGTGCAGTTATCA 60.081 41.667 0.00 0.00 0.00 2.15
1863 3824 7.471260 GCAGTTATCATGACTCATAGAAGAGGT 60.471 40.741 0.00 0.00 39.97 3.85
1904 3865 1.137513 GAACTCACGGAACTTGTCGG 58.862 55.000 0.00 0.00 0.00 4.79
1949 3910 6.309494 GTGATGAACAGTACGTGTATTTGCTA 59.691 38.462 0.00 0.00 39.03 3.49
1958 3919 2.789092 CGTGTATTTGCTAGCAGCTTGC 60.789 50.000 20.59 20.59 42.97 4.01
1972 3933 4.487948 GCAGCTTGCTTTTATCATTGACA 58.512 39.130 0.00 0.00 40.96 3.58
2018 3980 3.482156 AGTTGACATCAAGCTCACAGT 57.518 42.857 0.00 0.00 36.39 3.55
2028 3990 2.983136 CAAGCTCACAGTTGTAGAGTCG 59.017 50.000 0.00 0.00 0.00 4.18
2083 4045 4.440880 CTTCAGGACTATTTCTGCCTCTG 58.559 47.826 0.00 0.00 0.00 3.35
2142 4104 9.547753 AGAAATAGTGATATGTAATGTGTGGAC 57.452 33.333 0.00 0.00 0.00 4.02
2347 4309 9.488762 TGATTATGTATATTATTCTCCCTCCGT 57.511 33.333 0.00 0.00 0.00 4.69
2350 4312 6.600882 TGTATATTATTCTCCCTCCGTTCC 57.399 41.667 0.00 0.00 0.00 3.62
2351 4313 6.320518 TGTATATTATTCTCCCTCCGTTCCT 58.679 40.000 0.00 0.00 0.00 3.36
2352 4314 7.472741 TGTATATTATTCTCCCTCCGTTCCTA 58.527 38.462 0.00 0.00 0.00 2.94
2353 4315 7.951806 TGTATATTATTCTCCCTCCGTTCCTAA 59.048 37.037 0.00 0.00 0.00 2.69
2354 4316 7.867160 ATATTATTCTCCCTCCGTTCCTAAA 57.133 36.000 0.00 0.00 0.00 1.85
2355 4317 6.765355 ATTATTCTCCCTCCGTTCCTAAAT 57.235 37.500 0.00 0.00 0.00 1.40
2356 4318 7.867160 ATTATTCTCCCTCCGTTCCTAAATA 57.133 36.000 0.00 0.00 0.00 1.40
2357 4319 7.867160 TTATTCTCCCTCCGTTCCTAAATAT 57.133 36.000 0.00 0.00 0.00 1.28
2358 4320 6.765355 ATTCTCCCTCCGTTCCTAAATATT 57.235 37.500 0.00 0.00 0.00 1.28
2359 4321 6.570654 TTCTCCCTCCGTTCCTAAATATTT 57.429 37.500 5.89 5.89 0.00 1.40
2360 4322 5.925509 TCTCCCTCCGTTCCTAAATATTTG 58.074 41.667 11.05 1.40 0.00 2.32
2361 4323 5.427481 TCTCCCTCCGTTCCTAAATATTTGT 59.573 40.000 11.05 0.00 0.00 2.83
2362 4324 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2363 4325 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2364 4326 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2365 4327 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2366 4328 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
2367 4329 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
2368 4330 9.341899 CTCCGTTCCTAAATATTTGTCTTTTTG 57.658 33.333 11.05 0.00 0.00 2.44
2369 4331 9.069082 TCCGTTCCTAAATATTTGTCTTTTTGA 57.931 29.630 11.05 0.00 0.00 2.69
2370 4332 9.341899 CCGTTCCTAAATATTTGTCTTTTTGAG 57.658 33.333 11.05 0.00 0.00 3.02
2389 4351 6.817765 TTGAGATTTCAAATGGACTACCAC 57.182 37.500 0.00 0.00 42.50 4.16
2390 4352 6.303054 TTGAGATTTCAAATGGACTACCACA 58.697 36.000 0.00 0.00 42.50 4.17
2391 4353 6.947733 TTGAGATTTCAAATGGACTACCACAT 59.052 34.615 0.00 0.00 42.50 3.21
2392 4354 8.106462 TTGAGATTTCAAATGGACTACCACATA 58.894 33.333 0.00 0.00 42.50 2.29
2405 4367 9.462606 TGGACTACCACATACAGATGTATATAG 57.537 37.037 5.21 7.73 44.82 1.31
2406 4368 9.682465 GGACTACCACATACAGATGTATATAGA 57.318 37.037 5.21 0.00 44.82 1.98
2431 4393 9.262358 GACATATTTTAGAGTGTAGATTCACCC 57.738 37.037 0.00 0.00 38.91 4.61
2432 4394 8.768397 ACATATTTTAGAGTGTAGATTCACCCA 58.232 33.333 0.00 0.00 38.91 4.51
2433 4395 9.784531 CATATTTTAGAGTGTAGATTCACCCAT 57.215 33.333 0.00 0.00 38.91 4.00
2436 4398 8.934023 TTTTAGAGTGTAGATTCACCCATTTT 57.066 30.769 0.00 0.00 38.91 1.82
2437 4399 7.921786 TTAGAGTGTAGATTCACCCATTTTG 57.078 36.000 0.00 0.00 38.91 2.44
2438 4400 4.702131 AGAGTGTAGATTCACCCATTTTGC 59.298 41.667 0.00 0.00 38.91 3.68
2439 4401 4.666512 AGTGTAGATTCACCCATTTTGCT 58.333 39.130 0.00 0.00 38.91 3.91
2440 4402 4.702131 AGTGTAGATTCACCCATTTTGCTC 59.298 41.667 0.00 0.00 38.91 4.26
2441 4403 4.016444 TGTAGATTCACCCATTTTGCTCC 58.984 43.478 0.00 0.00 0.00 4.70
2442 4404 2.094675 AGATTCACCCATTTTGCTCCG 58.905 47.619 0.00 0.00 0.00 4.63
2443 4405 1.818674 GATTCACCCATTTTGCTCCGT 59.181 47.619 0.00 0.00 0.00 4.69
2444 4406 2.570415 TTCACCCATTTTGCTCCGTA 57.430 45.000 0.00 0.00 0.00 4.02
2445 4407 2.799126 TCACCCATTTTGCTCCGTAT 57.201 45.000 0.00 0.00 0.00 3.06
2446 4408 2.364632 TCACCCATTTTGCTCCGTATG 58.635 47.619 0.00 0.00 0.00 2.39
2447 4409 2.091541 CACCCATTTTGCTCCGTATGT 58.908 47.619 0.00 0.00 0.00 2.29
2448 4410 3.055021 TCACCCATTTTGCTCCGTATGTA 60.055 43.478 0.00 0.00 0.00 2.29
2449 4411 3.882888 CACCCATTTTGCTCCGTATGTAT 59.117 43.478 0.00 0.00 0.00 2.29
2450 4412 4.338118 CACCCATTTTGCTCCGTATGTATT 59.662 41.667 0.00 0.00 0.00 1.89
2451 4413 4.578928 ACCCATTTTGCTCCGTATGTATTC 59.421 41.667 0.00 0.00 0.00 1.75
2452 4414 4.578516 CCCATTTTGCTCCGTATGTATTCA 59.421 41.667 0.00 0.00 0.00 2.57
2453 4415 5.277974 CCCATTTTGCTCCGTATGTATTCAG 60.278 44.000 0.00 0.00 0.00 3.02
2454 4416 5.296780 CCATTTTGCTCCGTATGTATTCAGT 59.703 40.000 0.00 0.00 0.00 3.41
2455 4417 6.183360 CCATTTTGCTCCGTATGTATTCAGTT 60.183 38.462 0.00 0.00 0.00 3.16
2456 4418 5.794687 TTTGCTCCGTATGTATTCAGTTG 57.205 39.130 0.00 0.00 0.00 3.16
2457 4419 4.465632 TGCTCCGTATGTATTCAGTTGT 57.534 40.909 0.00 0.00 0.00 3.32
2458 4420 4.827692 TGCTCCGTATGTATTCAGTTGTT 58.172 39.130 0.00 0.00 0.00 2.83
2459 4421 4.629634 TGCTCCGTATGTATTCAGTTGTTG 59.370 41.667 0.00 0.00 0.00 3.33
2460 4422 4.868171 GCTCCGTATGTATTCAGTTGTTGA 59.132 41.667 0.00 0.00 0.00 3.18
2475 4437 8.594881 TCAGTTGTTGAAATCTCTAGAAAGAC 57.405 34.615 0.00 0.00 31.34 3.01
2476 4438 8.204160 TCAGTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 31.34 3.41
2477 4439 8.830580 CAGTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2478 4440 9.396022 AGTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
2494 4456 9.413734 AGAAAGACAAATATTTAGGAATGGAGG 57.586 33.333 0.00 0.00 0.00 4.30
2495 4457 8.539117 AAAGACAAATATTTAGGAATGGAGGG 57.461 34.615 0.00 0.00 0.00 4.30
2496 4458 7.465900 AGACAAATATTTAGGAATGGAGGGA 57.534 36.000 0.00 0.00 0.00 4.20
2497 4459 7.521669 AGACAAATATTTAGGAATGGAGGGAG 58.478 38.462 0.00 0.00 0.00 4.30
2498 4460 7.129504 AGACAAATATTTAGGAATGGAGGGAGT 59.870 37.037 0.00 0.00 0.00 3.85
2501 4463 8.440771 CAAATATTTAGGAATGGAGGGAGTAGT 58.559 37.037 0.00 0.00 0.00 2.73
2556 4518 9.748708 GCTTTGAAATAAATGGTGATGCTAATA 57.251 29.630 0.00 0.00 0.00 0.98
2566 4528 6.741992 TGGTGATGCTAATACTTGTTTCAG 57.258 37.500 0.00 0.00 0.00 3.02
2576 4538 7.173390 GCTAATACTTGTTTCAGTTCTCTGGTT 59.827 37.037 0.00 0.00 41.59 3.67
2824 4933 4.453819 CACTGGATTTTCTTCTGACACTCC 59.546 45.833 0.00 0.00 0.00 3.85
2826 4935 4.899502 TGGATTTTCTTCTGACACTCCTC 58.100 43.478 0.00 0.00 0.00 3.71
2827 4936 4.594920 TGGATTTTCTTCTGACACTCCTCT 59.405 41.667 0.00 0.00 0.00 3.69
2829 4938 5.512232 GGATTTTCTTCTGACACTCCTCTGT 60.512 44.000 0.00 0.00 0.00 3.41
2830 4939 5.359194 TTTTCTTCTGACACTCCTCTGTT 57.641 39.130 0.00 0.00 0.00 3.16
2833 4942 3.322254 TCTTCTGACACTCCTCTGTTTCC 59.678 47.826 0.00 0.00 0.00 3.13
2834 4943 2.677914 TCTGACACTCCTCTGTTTCCA 58.322 47.619 0.00 0.00 0.00 3.53
2835 4944 2.365617 TCTGACACTCCTCTGTTTCCAC 59.634 50.000 0.00 0.00 0.00 4.02
2843 4952 2.507886 TCCTCTGTTTCCACTTTCCACA 59.492 45.455 0.00 0.00 0.00 4.17
2912 5021 3.368323 CCCCATGGACAATTGCAACTTAC 60.368 47.826 15.22 0.00 0.00 2.34
3186 5295 9.429359 CGCTCTTATCTATTTCCTTATGACATT 57.571 33.333 0.00 0.00 0.00 2.71
3208 5317 0.679505 GGCTGGTGTGTCTAGTGTCA 59.320 55.000 0.00 0.00 0.00 3.58
3221 5330 1.213296 AGTGTCAACCAGGTTGGAGT 58.787 50.000 28.83 16.99 42.99 3.85
3227 5336 0.755327 AACCAGGTTGGAGTTGCACC 60.755 55.000 3.18 0.00 40.96 5.01
3228 5337 1.152777 CCAGGTTGGAGTTGCACCA 60.153 57.895 0.00 0.00 40.96 4.17
3244 5353 8.783833 AGTTGCACCATATAATAGAGCATTAG 57.216 34.615 0.00 0.00 32.61 1.73
3348 5457 9.512435 GATATGACGTGCTACTTTAAACTCTTA 57.488 33.333 0.00 0.00 0.00 2.10
3358 5467 9.852091 GCTACTTTAAACTCTTAGTAACTGCTA 57.148 33.333 0.00 0.00 0.00 3.49
3463 5572 6.631971 TGCAAGAATCAATACAAACAGTCA 57.368 33.333 0.00 0.00 0.00 3.41
3466 5575 7.013178 TGCAAGAATCAATACAAACAGTCAGAA 59.987 33.333 0.00 0.00 0.00 3.02
3467 5576 7.862372 GCAAGAATCAATACAAACAGTCAGAAA 59.138 33.333 0.00 0.00 0.00 2.52
3468 5577 9.173939 CAAGAATCAATACAAACAGTCAGAAAC 57.826 33.333 0.00 0.00 0.00 2.78
3469 5578 8.450578 AGAATCAATACAAACAGTCAGAAACA 57.549 30.769 0.00 0.00 0.00 2.83
3470 5579 9.071276 AGAATCAATACAAACAGTCAGAAACAT 57.929 29.630 0.00 0.00 0.00 2.71
3471 5580 9.121517 GAATCAATACAAACAGTCAGAAACATG 57.878 33.333 0.00 0.00 0.00 3.21
3875 5985 6.386927 AGGACATAGGAGTTGATGTTATTGGA 59.613 38.462 0.00 0.00 36.42 3.53
4024 6134 5.523916 GGTTAGTCAATACTTCATCGTGCAT 59.476 40.000 0.00 0.00 37.15 3.96
4069 6181 6.838198 TTATATGAATACACACCGAACAGC 57.162 37.500 0.00 0.00 0.00 4.40
4103 6216 6.981722 AGGCCTACAAACTTCTTTATTTGTG 58.018 36.000 1.29 3.53 46.01 3.33
4154 6267 6.353323 TGTTAAGTCTTCACTCATCAACCAA 58.647 36.000 0.00 0.00 29.93 3.67
4201 6314 8.497554 GCATGTGATGTCAATTTAAATTTGTGT 58.502 29.630 10.77 0.00 0.00 3.72
4203 6316 9.985730 ATGTGATGTCAATTTAAATTTGTGTCT 57.014 25.926 10.77 0.00 0.00 3.41
4263 6395 4.556501 GCTTAAGGGTTTTGCAAAAATGCC 60.557 41.667 25.40 20.95 0.00 4.40
4290 6422 2.358898 GTCAATTCACCACACAGCTTGT 59.641 45.455 0.00 0.00 39.97 3.16
4302 6434 1.893801 ACAGCTTGTACTAGGCTTCGT 59.106 47.619 6.46 0.00 40.13 3.85
4580 6713 5.560724 TCTAAGTGCTGCAATTTTAGGTCT 58.439 37.500 20.85 0.00 0.00 3.85
4593 6726 8.361889 GCAATTTTAGGTCTTTAGGGTTTGTAA 58.638 33.333 0.00 0.00 0.00 2.41
4696 6829 5.362430 GGTATTGCTAATGATTGTTTCCCCA 59.638 40.000 0.00 0.00 0.00 4.96
4711 6844 5.825679 TGTTTCCCCACATGTTATACTATGC 59.174 40.000 0.00 0.00 0.00 3.14
5001 7143 1.556911 CCTTGTAGAGACACCATGGCT 59.443 52.381 13.04 0.00 39.41 4.75
5062 7204 5.259832 TCAGTCATTCATCTACTCAGCAG 57.740 43.478 0.00 0.00 0.00 4.24
5099 7241 1.742268 CTGCTTTTAGAAGGGAGCTGC 59.258 52.381 0.00 0.00 36.16 5.25
5336 7478 5.406175 GCTGCAGTGCTTTAAATTGAATCAA 59.594 36.000 17.60 0.00 0.00 2.57
5389 7531 0.464554 GGAGGTTAGCCCATGTGCTC 60.465 60.000 5.76 0.00 41.68 4.26
5390 7532 0.464554 GAGGTTAGCCCATGTGCTCC 60.465 60.000 5.76 2.57 41.68 4.70
5391 7533 0.916358 AGGTTAGCCCATGTGCTCCT 60.916 55.000 5.76 5.20 41.68 3.69
5408 7550 2.685897 CTCCTGACCTGCTGTCTACTAC 59.314 54.545 8.16 0.00 44.75 2.73
5409 7551 2.309162 TCCTGACCTGCTGTCTACTACT 59.691 50.000 8.16 0.00 44.75 2.57
5410 7552 3.522343 TCCTGACCTGCTGTCTACTACTA 59.478 47.826 8.16 0.00 44.75 1.82
5447 7589 3.206964 TGTATTGCTCGTTGTGGTCAAA 58.793 40.909 0.00 0.00 35.20 2.69
5595 7737 5.791974 CACTTGCTCATCTGTTATTTGAACG 59.208 40.000 0.00 0.00 0.00 3.95
5615 7757 5.235305 ACGACATTGTTTCCTATGCATTC 57.765 39.130 3.54 0.00 0.00 2.67
5690 7837 6.036577 TGTGCTTATGATGTCACTGAACTA 57.963 37.500 0.00 0.00 0.00 2.24
5691 7838 6.643388 TGTGCTTATGATGTCACTGAACTAT 58.357 36.000 0.00 0.00 0.00 2.12
5692 7839 7.781056 TGTGCTTATGATGTCACTGAACTATA 58.219 34.615 0.00 0.00 0.00 1.31
5693 7840 8.257306 TGTGCTTATGATGTCACTGAACTATAA 58.743 33.333 0.00 0.00 0.00 0.98
5694 7841 9.265901 GTGCTTATGATGTCACTGAACTATAAT 57.734 33.333 0.00 0.00 0.00 1.28
5695 7842 9.836864 TGCTTATGATGTCACTGAACTATAATT 57.163 29.630 0.00 0.00 0.00 1.40
5699 7846 8.899427 ATGATGTCACTGAACTATAATTCCTG 57.101 34.615 0.00 0.00 0.00 3.86
5700 7847 8.078060 TGATGTCACTGAACTATAATTCCTGA 57.922 34.615 0.00 0.00 0.00 3.86
5701 7848 8.539544 TGATGTCACTGAACTATAATTCCTGAA 58.460 33.333 0.00 0.00 0.00 3.02
5702 7849 8.723942 ATGTCACTGAACTATAATTCCTGAAC 57.276 34.615 0.00 0.00 0.00 3.18
5703 7850 7.907389 TGTCACTGAACTATAATTCCTGAACT 58.093 34.615 0.00 0.00 0.00 3.01
5732 7879 2.408271 TTGATGATGGTGCTGAGTCC 57.592 50.000 0.00 0.00 0.00 3.85
5794 7944 9.005777 TGAAATGTAAAATGTGGTCCTAAGTAC 57.994 33.333 0.00 0.00 0.00 2.73
5795 7945 7.605410 AATGTAAAATGTGGTCCTAAGTACG 57.395 36.000 0.00 0.00 0.00 3.67
5796 7946 6.100404 TGTAAAATGTGGTCCTAAGTACGT 57.900 37.500 0.00 0.00 0.00 3.57
5797 7947 7.225784 TGTAAAATGTGGTCCTAAGTACGTA 57.774 36.000 0.00 0.00 0.00 3.57
5809 7959 6.914757 GTCCTAAGTACGTAACTTATTGCGAT 59.085 38.462 14.06 0.00 46.85 4.58
5816 7966 8.133627 AGTACGTAACTTATTGCGATATCTGTT 58.866 33.333 0.00 4.13 45.66 3.16
5858 8008 2.490509 TGCAAATGACTGGATCTGCTTG 59.509 45.455 0.00 0.00 29.50 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 6.425114 TCGTTACGTACTTCTATATCCTCACC 59.575 42.308 4.24 0.00 0.00 4.02
42 43 7.413475 TCGTTACGTACTTCTATATCCTCAC 57.587 40.000 4.24 0.00 0.00 3.51
87 88 9.258629 TGGGTTCTCTCATCATTTCAAATTTAT 57.741 29.630 0.00 0.00 0.00 1.40
92 93 8.648698 TTAATGGGTTCTCTCATCATTTCAAA 57.351 30.769 0.00 0.00 31.55 2.69
96 97 7.066284 CGTTCTTAATGGGTTCTCTCATCATTT 59.934 37.037 0.00 0.00 31.55 2.32
191 193 7.328277 TCACAACAAGCACTTTACTTAATGT 57.672 32.000 0.00 0.00 0.00 2.71
213 215 7.765695 AGAAAAGAAATATTGAGTTGCCTCA 57.234 32.000 0.00 0.00 45.95 3.86
401 407 5.875224 TCAGAAATTGGTCACATTCCAGTA 58.125 37.500 0.00 0.00 36.28 2.74
402 408 4.728772 TCAGAAATTGGTCACATTCCAGT 58.271 39.130 0.00 0.00 36.28 4.00
403 409 5.710513 TTCAGAAATTGGTCACATTCCAG 57.289 39.130 0.00 0.00 36.28 3.86
404 410 6.669125 ATTTCAGAAATTGGTCACATTCCA 57.331 33.333 2.20 0.00 0.00 3.53
405 411 7.967890 AAATTTCAGAAATTGGTCACATTCC 57.032 32.000 19.78 0.00 40.05 3.01
406 412 9.044150 TGAAAATTTCAGAAATTGGTCACATTC 57.956 29.630 19.78 16.76 40.05 2.67
407 413 8.829612 GTGAAAATTTCAGAAATTGGTCACATT 58.170 29.630 32.63 20.40 45.14 2.71
408 414 8.369218 GTGAAAATTTCAGAAATTGGTCACAT 57.631 30.769 32.63 15.56 45.14 3.21
409 415 7.769272 GTGAAAATTTCAGAAATTGGTCACA 57.231 32.000 32.63 21.65 45.14 3.58
410 416 7.769272 TGTGAAAATTTCAGAAATTGGTCAC 57.231 32.000 31.91 31.91 45.50 3.67
411 417 8.783833 TTTGTGAAAATTTCAGAAATTGGTCA 57.216 26.923 21.90 20.58 44.73 4.02
494 500 4.448060 GGGAGTAATTGCTATGCGTACTTC 59.552 45.833 0.00 0.00 0.00 3.01
500 506 3.062763 CAGAGGGAGTAATTGCTATGCG 58.937 50.000 0.00 0.00 0.00 4.73
510 516 9.725206 ACTTATATTTAGGAACAGAGGGAGTAA 57.275 33.333 0.00 0.00 0.00 2.24
511 517 9.364653 GACTTATATTTAGGAACAGAGGGAGTA 57.635 37.037 0.00 0.00 0.00 2.59
512 518 8.068733 AGACTTATATTTAGGAACAGAGGGAGT 58.931 37.037 0.00 0.00 0.00 3.85
514 520 8.855804 AAGACTTATATTTAGGAACAGAGGGA 57.144 34.615 0.00 0.00 0.00 4.20
515 521 9.907229 AAAAGACTTATATTTAGGAACAGAGGG 57.093 33.333 0.00 0.00 0.00 4.30
542 548 8.353684 CGTATGTAGTCCATAGTGAAATCTCTT 58.646 37.037 0.00 0.00 36.71 2.85
544 550 7.040617 TCCGTATGTAGTCCATAGTGAAATCTC 60.041 40.741 0.00 0.00 36.71 2.75
546 552 6.978338 TCCGTATGTAGTCCATAGTGAAATC 58.022 40.000 0.00 0.00 36.71 2.17
549 555 4.277672 GCTCCGTATGTAGTCCATAGTGAA 59.722 45.833 0.00 0.00 36.71 3.18
550 556 3.819337 GCTCCGTATGTAGTCCATAGTGA 59.181 47.826 0.00 0.00 36.71 3.41
552 558 3.828921 TGCTCCGTATGTAGTCCATAGT 58.171 45.455 0.00 0.00 36.71 2.12
554 560 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
555 561 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
559 565 8.500753 TTCATTTATTTTGCTCCGTATGTAGT 57.499 30.769 0.00 0.00 0.00 2.73
560 566 9.599322 GATTCATTTATTTTGCTCCGTATGTAG 57.401 33.333 0.00 0.00 0.00 2.74
561 567 8.279800 CGATTCATTTATTTTGCTCCGTATGTA 58.720 33.333 0.00 0.00 0.00 2.29
562 568 7.011950 TCGATTCATTTATTTTGCTCCGTATGT 59.988 33.333 0.00 0.00 0.00 2.29
563 569 7.321271 GTCGATTCATTTATTTTGCTCCGTATG 59.679 37.037 0.00 0.00 0.00 2.39
565 571 6.314152 TGTCGATTCATTTATTTTGCTCCGTA 59.686 34.615 0.00 0.00 0.00 4.02
566 572 5.123186 TGTCGATTCATTTATTTTGCTCCGT 59.877 36.000 0.00 0.00 0.00 4.69
570 576 7.383102 AGAGTGTCGATTCATTTATTTTGCT 57.617 32.000 0.00 0.00 0.00 3.91
579 585 9.823647 AGACATATTTTAGAGTGTCGATTCATT 57.176 29.630 0.00 0.00 44.20 2.57
621 627 7.970102 AGATGACCCAACTTTGTACTAAAGTA 58.030 34.615 17.85 7.24 39.36 2.24
622 628 6.838382 AGATGACCCAACTTTGTACTAAAGT 58.162 36.000 14.04 14.04 41.82 2.66
623 629 9.449719 AATAGATGACCCAACTTTGTACTAAAG 57.550 33.333 13.08 13.08 0.00 1.85
624 630 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
625 631 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
626 632 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
627 633 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
628 634 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
629 635 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
630 636 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
632 638 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
633 639 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
635 641 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
638 644 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
639 645 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
640 646 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
641 647 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
642 648 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
643 649 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
644 650 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
646 652 5.703730 ATTACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
654 660 4.323257 CCACTACAAATTACTCCCTCCGTT 60.323 45.833 0.00 0.00 0.00 4.44
655 661 3.197116 CCACTACAAATTACTCCCTCCGT 59.803 47.826 0.00 0.00 0.00 4.69
656 662 3.449737 TCCACTACAAATTACTCCCTCCG 59.550 47.826 0.00 0.00 0.00 4.63
657 663 5.431179 TTCCACTACAAATTACTCCCTCC 57.569 43.478 0.00 0.00 0.00 4.30
658 664 6.890293 AGATTCCACTACAAATTACTCCCTC 58.110 40.000 0.00 0.00 0.00 4.30
660 666 6.890293 AGAGATTCCACTACAAATTACTCCC 58.110 40.000 0.00 0.00 0.00 4.30
661 667 9.886132 TTTAGAGATTCCACTACAAATTACTCC 57.114 33.333 0.00 0.00 0.00 3.85
668 674 9.847224 AAGTCTTTTTAGAGATTCCACTACAAA 57.153 29.630 0.00 0.00 0.00 2.83
685 691 8.963725 CCCCCGTTCTTAAATATAAGTCTTTTT 58.036 33.333 0.00 0.00 39.65 1.94
686 692 8.330993 TCCCCCGTTCTTAAATATAAGTCTTTT 58.669 33.333 0.00 0.00 39.65 2.27
687 693 7.864770 TCCCCCGTTCTTAAATATAAGTCTTT 58.135 34.615 0.00 0.00 39.65 2.52
689 695 6.614496 ACTCCCCCGTTCTTAAATATAAGTCT 59.386 38.462 0.00 0.00 39.65 3.24
690 696 6.824553 ACTCCCCCGTTCTTAAATATAAGTC 58.175 40.000 0.00 0.00 39.65 3.01
691 697 6.819947 ACTCCCCCGTTCTTAAATATAAGT 57.180 37.500 0.00 0.00 39.65 2.24
692 698 7.729116 TGTACTCCCCCGTTCTTAAATATAAG 58.271 38.462 0.00 0.00 39.97 1.73
693 699 7.673641 TGTACTCCCCCGTTCTTAAATATAA 57.326 36.000 0.00 0.00 0.00 0.98
694 700 7.860649 ATGTACTCCCCCGTTCTTAAATATA 57.139 36.000 0.00 0.00 0.00 0.86
695 701 6.758806 ATGTACTCCCCCGTTCTTAAATAT 57.241 37.500 0.00 0.00 0.00 1.28
696 702 7.345392 AGTTATGTACTCCCCCGTTCTTAAATA 59.655 37.037 0.00 0.00 28.23 1.40
697 703 6.157471 AGTTATGTACTCCCCCGTTCTTAAAT 59.843 38.462 0.00 0.00 28.23 1.40
699 705 5.025453 AGTTATGTACTCCCCCGTTCTTAA 58.975 41.667 0.00 0.00 28.23 1.85
700 706 4.613437 AGTTATGTACTCCCCCGTTCTTA 58.387 43.478 0.00 0.00 28.23 2.10
701 707 3.447950 AGTTATGTACTCCCCCGTTCTT 58.552 45.455 0.00 0.00 28.23 2.52
702 708 3.111741 AGTTATGTACTCCCCCGTTCT 57.888 47.619 0.00 0.00 28.23 3.01
703 709 4.262335 CCATAGTTATGTACTCCCCCGTTC 60.262 50.000 0.00 0.00 38.33 3.95
704 710 3.644738 CCATAGTTATGTACTCCCCCGTT 59.355 47.826 0.00 0.00 38.33 4.44
705 711 3.117016 TCCATAGTTATGTACTCCCCCGT 60.117 47.826 0.00 0.00 38.33 5.28
708 714 6.435292 ACAATCCATAGTTATGTACTCCCC 57.565 41.667 0.00 0.00 38.33 4.81
710 716 7.657761 CCAGAACAATCCATAGTTATGTACTCC 59.342 40.741 0.00 0.00 35.73 3.85
711 717 8.204836 ACCAGAACAATCCATAGTTATGTACTC 58.795 37.037 0.00 0.00 35.73 2.59
712 718 8.090788 ACCAGAACAATCCATAGTTATGTACT 57.909 34.615 0.00 0.00 35.73 2.73
713 719 8.732746 AACCAGAACAATCCATAGTTATGTAC 57.267 34.615 0.00 0.00 35.73 2.90
714 720 9.747898 AAAACCAGAACAATCCATAGTTATGTA 57.252 29.630 0.00 0.00 35.73 2.29
724 2629 6.430925 CAGTCTATCAAAACCAGAACAATCCA 59.569 38.462 0.00 0.00 0.00 3.41
727 2632 7.285401 ACAACAGTCTATCAAAACCAGAACAAT 59.715 33.333 0.00 0.00 0.00 2.71
728 2633 6.601613 ACAACAGTCTATCAAAACCAGAACAA 59.398 34.615 0.00 0.00 0.00 2.83
733 2638 9.436957 ACTATAACAACAGTCTATCAAAACCAG 57.563 33.333 0.00 0.00 0.00 4.00
755 2660 8.903820 GGCCTTTGAGTATATCACAAAAACTAT 58.096 33.333 0.00 0.00 37.77 2.12
766 2671 7.051000 AGAAAGAACTGGCCTTTGAGTATATC 58.949 38.462 3.32 0.00 34.33 1.63
865 2771 5.009610 TCAAGCCAGTTCTTTGTGGTTTATC 59.990 40.000 0.00 0.00 35.28 1.75
886 2793 2.094575 CCAACAACTGACGAACGTTCAA 59.905 45.455 26.71 11.47 0.00 2.69
913 2822 1.377202 GCGATGGAGGGCAGAACAA 60.377 57.895 0.00 0.00 0.00 2.83
936 2845 1.228769 GGGGTGGGAGTTTGGGTTC 60.229 63.158 0.00 0.00 0.00 3.62
1158 3091 2.204865 ATTGGGGCGGAAATGTCGGA 62.205 55.000 0.00 0.00 0.00 4.55
1457 3390 4.081420 CCCTTGGATTCCGAGATATCGAAT 60.081 45.833 20.01 8.98 37.20 3.34
1508 3441 1.194781 GCTCCCTGACCTGTTCCTCA 61.195 60.000 0.00 0.00 0.00 3.86
1588 3521 1.027357 ATGTATCGGCGTTACCTCGT 58.973 50.000 21.50 6.24 35.61 4.18
1675 3609 5.049405 GTCTCTAAACACCAATTCACCACAG 60.049 44.000 0.00 0.00 0.00 3.66
1732 3693 4.143431 CCATTTTCATAACGCAAAACCACG 60.143 41.667 0.00 0.00 0.00 4.94
1792 3753 1.653151 GATTTCTAGGTTTCGCCGCT 58.347 50.000 0.00 0.00 43.70 5.52
1793 3754 0.300789 CGATTTCTAGGTTTCGCCGC 59.699 55.000 0.00 0.00 43.70 6.53
1796 3757 3.309954 AGCAATCGATTTCTAGGTTTCGC 59.690 43.478 8.62 5.21 0.00 4.70
1846 3807 7.451255 CCTATGAGAACCTCTTCTATGAGTCAT 59.549 40.741 11.12 11.12 36.82 3.06
1904 3865 2.434702 ACCTATTGGACCGACAGAATCC 59.565 50.000 0.00 0.00 37.04 3.01
1958 3919 9.695526 TCCAAATCACTTTGTCAATGATAAAAG 57.304 29.630 15.41 15.41 40.15 2.27
1972 3933 4.634199 CAGCCATTGTTCCAAATCACTTT 58.366 39.130 0.00 0.00 0.00 2.66
1998 3960 3.482156 ACTGTGAGCTTGATGTCAACT 57.518 42.857 0.00 0.00 0.00 3.16
2018 3980 6.037391 CAGTTTTGGTTTTACCGACTCTACAA 59.963 38.462 0.00 0.00 42.58 2.41
2028 3990 5.270893 ACACCATCAGTTTTGGTTTTACC 57.729 39.130 0.00 0.00 45.19 2.85
2083 4045 0.177604 ATCAGCTAGCAGTCAGGCAC 59.822 55.000 18.83 0.00 35.83 5.01
2136 4098 3.289407 TTTTGTCATCCACAGTCCACA 57.711 42.857 0.00 0.00 35.97 4.17
2177 4139 4.081917 TGTGAATTGTGGAGTATACGCTGA 60.082 41.667 6.57 0.00 0.00 4.26
2275 4237 1.762708 GCATAAGCCTGCCCACTAAA 58.237 50.000 0.00 0.00 36.10 1.85
2337 4299 5.427481 ACAAATATTTAGGAACGGAGGGAGA 59.573 40.000 0.00 0.00 0.00 3.71
2338 4300 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2339 4301 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2340 4302 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2341 4303 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
2342 4304 9.341899 CAAAAAGACAAATATTTAGGAACGGAG 57.658 33.333 0.00 0.00 0.00 4.63
2343 4305 9.069082 TCAAAAAGACAAATATTTAGGAACGGA 57.931 29.630 0.00 0.00 0.00 4.69
2344 4306 9.341899 CTCAAAAAGACAAATATTTAGGAACGG 57.658 33.333 0.00 0.00 0.00 4.44
2366 4328 6.303054 TGTGGTAGTCCATTTGAAATCTCAA 58.697 36.000 0.00 0.00 46.20 3.02
2367 4329 5.875224 TGTGGTAGTCCATTTGAAATCTCA 58.125 37.500 0.00 0.00 46.20 3.27
2368 4330 7.552687 TGTATGTGGTAGTCCATTTGAAATCTC 59.447 37.037 0.00 0.00 46.20 2.75
2369 4331 7.402054 TGTATGTGGTAGTCCATTTGAAATCT 58.598 34.615 0.00 0.00 46.20 2.40
2370 4332 7.552687 TCTGTATGTGGTAGTCCATTTGAAATC 59.447 37.037 0.00 0.00 46.20 2.17
2371 4333 7.402054 TCTGTATGTGGTAGTCCATTTGAAAT 58.598 34.615 0.00 0.00 46.20 2.17
2372 4334 6.774673 TCTGTATGTGGTAGTCCATTTGAAA 58.225 36.000 0.00 0.00 46.20 2.69
2373 4335 6.367374 TCTGTATGTGGTAGTCCATTTGAA 57.633 37.500 0.00 0.00 46.20 2.69
2374 4336 6.070251 ACATCTGTATGTGGTAGTCCATTTGA 60.070 38.462 0.00 0.00 44.79 2.69
2375 4337 6.115446 ACATCTGTATGTGGTAGTCCATTTG 58.885 40.000 0.00 0.00 44.79 2.32
2376 4338 6.313519 ACATCTGTATGTGGTAGTCCATTT 57.686 37.500 0.00 0.00 44.79 2.32
2377 4339 5.957771 ACATCTGTATGTGGTAGTCCATT 57.042 39.130 0.00 0.00 44.79 3.16
2378 4340 8.901472 ATATACATCTGTATGTGGTAGTCCAT 57.099 34.615 12.10 0.00 45.99 3.41
2379 4341 9.462606 CTATATACATCTGTATGTGGTAGTCCA 57.537 37.037 12.10 0.00 45.99 4.02
2380 4342 9.682465 TCTATATACATCTGTATGTGGTAGTCC 57.318 37.037 12.10 0.00 45.99 3.85
2405 4367 9.262358 GGGTGAATCTACACTCTAAAATATGTC 57.738 37.037 0.00 0.00 38.14 3.06
2406 4368 8.768397 TGGGTGAATCTACACTCTAAAATATGT 58.232 33.333 0.00 0.00 41.33 2.29
2407 4369 9.784531 ATGGGTGAATCTACACTCTAAAATATG 57.215 33.333 0.00 0.00 41.33 1.78
2410 4372 9.533831 AAAATGGGTGAATCTACACTCTAAAAT 57.466 29.630 0.00 0.00 41.33 1.82
2411 4373 8.792633 CAAAATGGGTGAATCTACACTCTAAAA 58.207 33.333 0.00 0.00 41.33 1.52
2412 4374 7.094377 GCAAAATGGGTGAATCTACACTCTAAA 60.094 37.037 0.00 0.00 41.33 1.85
2413 4375 6.374333 GCAAAATGGGTGAATCTACACTCTAA 59.626 38.462 0.00 0.00 41.33 2.10
2414 4376 5.880332 GCAAAATGGGTGAATCTACACTCTA 59.120 40.000 0.00 0.00 41.33 2.43
2415 4377 4.702131 GCAAAATGGGTGAATCTACACTCT 59.298 41.667 0.00 0.00 41.33 3.24
2416 4378 4.702131 AGCAAAATGGGTGAATCTACACTC 59.298 41.667 0.00 0.00 41.16 3.51
2417 4379 4.666512 AGCAAAATGGGTGAATCTACACT 58.333 39.130 0.00 0.00 40.22 3.55
2418 4380 4.142381 GGAGCAAAATGGGTGAATCTACAC 60.142 45.833 0.00 0.00 39.70 2.90
2419 4381 4.016444 GGAGCAAAATGGGTGAATCTACA 58.984 43.478 0.00 0.00 0.00 2.74
2420 4382 3.065371 CGGAGCAAAATGGGTGAATCTAC 59.935 47.826 0.00 0.00 0.00 2.59
2421 4383 3.278574 CGGAGCAAAATGGGTGAATCTA 58.721 45.455 0.00 0.00 0.00 1.98
2422 4384 2.094675 CGGAGCAAAATGGGTGAATCT 58.905 47.619 0.00 0.00 0.00 2.40
2423 4385 1.818674 ACGGAGCAAAATGGGTGAATC 59.181 47.619 0.00 0.00 0.00 2.52
2424 4386 1.923356 ACGGAGCAAAATGGGTGAAT 58.077 45.000 0.00 0.00 0.00 2.57
2425 4387 2.570415 TACGGAGCAAAATGGGTGAA 57.430 45.000 0.00 0.00 0.00 3.18
2426 4388 2.290641 ACATACGGAGCAAAATGGGTGA 60.291 45.455 0.00 0.00 0.00 4.02
2427 4389 2.091541 ACATACGGAGCAAAATGGGTG 58.908 47.619 0.00 0.00 0.00 4.61
2428 4390 2.507407 ACATACGGAGCAAAATGGGT 57.493 45.000 0.00 0.00 0.00 4.51
2429 4391 4.578516 TGAATACATACGGAGCAAAATGGG 59.421 41.667 0.00 0.00 0.00 4.00
2430 4392 5.296780 ACTGAATACATACGGAGCAAAATGG 59.703 40.000 0.00 0.00 0.00 3.16
2431 4393 6.363577 ACTGAATACATACGGAGCAAAATG 57.636 37.500 0.00 0.00 0.00 2.32
2432 4394 6.374333 ACAACTGAATACATACGGAGCAAAAT 59.626 34.615 0.00 0.00 0.00 1.82
2433 4395 5.703592 ACAACTGAATACATACGGAGCAAAA 59.296 36.000 0.00 0.00 0.00 2.44
2434 4396 5.242434 ACAACTGAATACATACGGAGCAAA 58.758 37.500 0.00 0.00 0.00 3.68
2435 4397 4.827692 ACAACTGAATACATACGGAGCAA 58.172 39.130 0.00 0.00 0.00 3.91
2436 4398 4.465632 ACAACTGAATACATACGGAGCA 57.534 40.909 0.00 0.00 0.00 4.26
2437 4399 4.868171 TCAACAACTGAATACATACGGAGC 59.132 41.667 0.00 0.00 0.00 4.70
2438 4400 6.961359 TTCAACAACTGAATACATACGGAG 57.039 37.500 0.00 0.00 39.20 4.63
2439 4401 7.822334 AGATTTCAACAACTGAATACATACGGA 59.178 33.333 0.00 0.00 43.64 4.69
2440 4402 7.974675 AGATTTCAACAACTGAATACATACGG 58.025 34.615 0.00 0.00 43.64 4.02
2441 4403 8.873830 AGAGATTTCAACAACTGAATACATACG 58.126 33.333 0.00 0.00 43.64 3.06
2445 4407 9.996554 TTCTAGAGATTTCAACAACTGAATACA 57.003 29.630 0.00 0.00 43.64 2.29
2448 4410 9.784531 TCTTTCTAGAGATTTCAACAACTGAAT 57.215 29.630 0.00 0.00 43.64 2.57
2449 4411 9.046296 GTCTTTCTAGAGATTTCAACAACTGAA 57.954 33.333 0.00 0.00 42.48 3.02
2450 4412 8.204160 TGTCTTTCTAGAGATTTCAACAACTGA 58.796 33.333 0.00 0.00 0.00 3.41
2451 4413 8.370493 TGTCTTTCTAGAGATTTCAACAACTG 57.630 34.615 0.00 0.00 0.00 3.16
2452 4414 8.964476 TTGTCTTTCTAGAGATTTCAACAACT 57.036 30.769 0.00 0.00 0.00 3.16
2468 4430 9.413734 CCTCCATTCCTAAATATTTGTCTTTCT 57.586 33.333 11.05 0.00 0.00 2.52
2469 4431 8.633561 CCCTCCATTCCTAAATATTTGTCTTTC 58.366 37.037 11.05 0.00 0.00 2.62
2470 4432 8.343787 TCCCTCCATTCCTAAATATTTGTCTTT 58.656 33.333 11.05 0.00 0.00 2.52
2471 4433 7.882755 TCCCTCCATTCCTAAATATTTGTCTT 58.117 34.615 11.05 0.00 0.00 3.01
2472 4434 7.129504 ACTCCCTCCATTCCTAAATATTTGTCT 59.870 37.037 11.05 0.00 0.00 3.41
2473 4435 7.290813 ACTCCCTCCATTCCTAAATATTTGTC 58.709 38.462 11.05 0.00 0.00 3.18
2474 4436 7.226059 ACTCCCTCCATTCCTAAATATTTGT 57.774 36.000 11.05 0.00 0.00 2.83
2475 4437 8.440771 ACTACTCCCTCCATTCCTAAATATTTG 58.559 37.037 11.05 1.40 0.00 2.32
2476 4438 8.582891 ACTACTCCCTCCATTCCTAAATATTT 57.417 34.615 5.89 5.89 0.00 1.40
2477 4439 8.582891 AACTACTCCCTCCATTCCTAAATATT 57.417 34.615 0.00 0.00 0.00 1.28
2478 4440 9.860393 ATAACTACTCCCTCCATTCCTAAATAT 57.140 33.333 0.00 0.00 0.00 1.28
2479 4441 9.684702 AATAACTACTCCCTCCATTCCTAAATA 57.315 33.333 0.00 0.00 0.00 1.40
2480 4442 8.582891 AATAACTACTCCCTCCATTCCTAAAT 57.417 34.615 0.00 0.00 0.00 1.40
2481 4443 8.931568 GTAATAACTACTCCCTCCATTCCTAAA 58.068 37.037 0.00 0.00 0.00 1.85
2482 4444 7.511714 GGTAATAACTACTCCCTCCATTCCTAA 59.488 40.741 0.00 0.00 0.00 2.69
2483 4445 7.015064 GGTAATAACTACTCCCTCCATTCCTA 58.985 42.308 0.00 0.00 0.00 2.94
2484 4446 5.845065 GGTAATAACTACTCCCTCCATTCCT 59.155 44.000 0.00 0.00 0.00 3.36
2485 4447 5.605488 TGGTAATAACTACTCCCTCCATTCC 59.395 44.000 0.00 0.00 0.00 3.01
2486 4448 6.099269 TGTGGTAATAACTACTCCCTCCATTC 59.901 42.308 0.00 0.00 37.92 2.67
2487 4449 5.968167 TGTGGTAATAACTACTCCCTCCATT 59.032 40.000 0.00 0.00 37.92 3.16
2488 4450 5.535029 TGTGGTAATAACTACTCCCTCCAT 58.465 41.667 0.00 0.00 37.92 3.41
2489 4451 4.950361 TGTGGTAATAACTACTCCCTCCA 58.050 43.478 0.00 0.00 37.92 3.86
2490 4452 5.742255 GCATGTGGTAATAACTACTCCCTCC 60.742 48.000 0.00 0.00 37.92 4.30
2491 4453 5.070580 AGCATGTGGTAATAACTACTCCCTC 59.929 44.000 0.00 0.00 37.92 4.30
2492 4454 4.969359 AGCATGTGGTAATAACTACTCCCT 59.031 41.667 0.00 0.00 37.92 4.20
2493 4455 5.070580 AGAGCATGTGGTAATAACTACTCCC 59.929 44.000 0.00 0.00 37.92 4.30
2494 4456 6.163135 AGAGCATGTGGTAATAACTACTCC 57.837 41.667 0.00 0.00 37.92 3.85
2495 4457 6.041069 AGGAGAGCATGTGGTAATAACTACTC 59.959 42.308 0.00 0.00 37.92 2.59
2496 4458 5.900123 AGGAGAGCATGTGGTAATAACTACT 59.100 40.000 0.00 0.00 37.92 2.57
2497 4459 6.041069 AGAGGAGAGCATGTGGTAATAACTAC 59.959 42.308 0.00 0.00 37.59 2.73
2498 4460 6.136857 AGAGGAGAGCATGTGGTAATAACTA 58.863 40.000 0.00 0.00 0.00 2.24
2501 4463 5.957771 AAGAGGAGAGCATGTGGTAATAA 57.042 39.130 0.00 0.00 0.00 1.40
2556 4518 4.843728 TGAACCAGAGAACTGAAACAAGT 58.156 39.130 0.00 0.00 46.03 3.16
2592 4554 5.801531 TTGACTACAAGCTACTGGAAGAA 57.198 39.130 0.00 0.00 37.43 2.52
2601 4563 7.836842 TCATACTCATGTTTGACTACAAGCTA 58.163 34.615 0.00 0.00 37.92 3.32
2660 4769 7.120579 ACACTGAACACACAAATCAAGTAAGAA 59.879 33.333 0.00 0.00 0.00 2.52
2797 4906 4.036734 TGTCAGAAGAAAATCCAGTGCAAC 59.963 41.667 0.00 0.00 0.00 4.17
2824 4933 3.066760 GGTTGTGGAAAGTGGAAACAGAG 59.933 47.826 0.00 0.00 44.46 3.35
2826 4935 3.023832 AGGTTGTGGAAAGTGGAAACAG 58.976 45.455 0.00 0.00 44.46 3.16
2827 4936 2.757868 CAGGTTGTGGAAAGTGGAAACA 59.242 45.455 0.00 0.00 38.70 2.83
2829 4938 1.754226 GCAGGTTGTGGAAAGTGGAAA 59.246 47.619 0.00 0.00 0.00 3.13
2830 4939 1.064017 AGCAGGTTGTGGAAAGTGGAA 60.064 47.619 0.00 0.00 0.00 3.53
2833 4942 3.126001 TCTAGCAGGTTGTGGAAAGTG 57.874 47.619 0.00 0.00 0.00 3.16
2834 4943 4.074970 CAATCTAGCAGGTTGTGGAAAGT 58.925 43.478 2.17 0.00 0.00 2.66
2835 4944 4.326826 TCAATCTAGCAGGTTGTGGAAAG 58.673 43.478 8.40 0.00 0.00 2.62
2843 4952 4.400567 GCTTTTCCATCAATCTAGCAGGTT 59.599 41.667 0.00 0.00 0.00 3.50
2912 5021 2.076863 GTCATCCCTCCTTCAACAACG 58.923 52.381 0.00 0.00 0.00 4.10
3137 5246 4.494591 AGAGAAAGGAAGGAACAGGTACT 58.505 43.478 0.00 0.00 43.88 2.73
3186 5295 0.392706 CACTAGACACACCAGCCACA 59.607 55.000 0.00 0.00 0.00 4.17
3208 5317 0.755327 GGTGCAACTCCAACCTGGTT 60.755 55.000 6.18 6.18 39.03 3.67
3221 5330 8.374743 TCACTAATGCTCTATTATATGGTGCAA 58.625 33.333 0.00 0.00 42.10 4.08
3244 5353 4.759693 TGGGAACATAACACTGACAATCAC 59.240 41.667 0.00 0.00 33.40 3.06
3348 5457 6.545298 GTGGGTACAGTATACTAGCAGTTACT 59.455 42.308 4.74 0.00 0.00 2.24
3358 5467 7.177392 AGTTTCGTAAAGTGGGTACAGTATACT 59.823 37.037 0.00 0.00 0.00 2.12
3469 5578 3.423749 TGCTGACATGAACATGGTTCAT 58.576 40.909 16.56 16.56 42.91 2.57
3470 5579 2.861274 TGCTGACATGAACATGGTTCA 58.139 42.857 13.51 13.51 42.91 3.18
3471 5580 3.004629 TGTTGCTGACATGAACATGGTTC 59.995 43.478 17.25 8.55 42.91 3.62
3545 5654 5.054477 GCGTTTTACCTCCTTGCAGATATA 58.946 41.667 0.00 0.00 0.00 0.86
3750 5860 4.652421 AGCCACAATCTGCCAATGAAATAT 59.348 37.500 0.00 0.00 0.00 1.28
3875 5985 3.198635 CCATATCCACTGTCCAGTCAAGT 59.801 47.826 0.00 0.00 40.20 3.16
4052 6164 4.868171 TGATAAGCTGTTCGGTGTGTATTC 59.132 41.667 0.00 0.00 0.00 1.75
4069 6181 5.091261 AGTTTGTAGGCCTCACTGATAAG 57.909 43.478 9.68 0.00 0.00 1.73
4131 6244 6.861065 TTGGTTGATGAGTGAAGACTTAAC 57.139 37.500 0.00 0.00 30.16 2.01
4154 6267 1.927487 TGAATTCCTTGCACAGCCAT 58.073 45.000 2.27 0.00 0.00 4.40
4290 6422 2.786777 TGACAGTGACGAAGCCTAGTA 58.213 47.619 0.00 0.00 0.00 1.82
4302 6434 4.041567 ACAACATAGGGTCAATGACAGTGA 59.958 41.667 15.86 0.51 33.68 3.41
4604 6737 9.950496 AGTTAGATCATCAACTGATACAAAGTT 57.050 29.630 6.59 0.00 44.83 2.66
4696 6829 5.822519 CACAACCCTGCATAGTATAACATGT 59.177 40.000 0.00 0.00 0.00 3.21
4711 6844 0.313043 CAGCTGCTTTCACAACCCTG 59.687 55.000 0.00 0.00 0.00 4.45
5099 7241 6.142818 TGAACAACCCACTTGAATAAACTG 57.857 37.500 0.00 0.00 33.59 3.16
5410 7552 8.612619 CGAGCAATACAGAATATGTTAAAACCT 58.387 33.333 0.00 0.00 39.96 3.50
5447 7589 3.308688 CCATCCATTTTCACCCAGAGAGT 60.309 47.826 0.00 0.00 0.00 3.24
5595 7737 5.484173 TCGAATGCATAGGAAACAATGTC 57.516 39.130 0.00 0.00 0.00 3.06
5663 7810 5.550290 TCAGTGACATCATAAGCACAAGAA 58.450 37.500 0.00 0.00 33.85 2.52
5692 7839 9.784531 CATCAATAGTGGTATAGTTCAGGAATT 57.215 33.333 0.00 0.00 0.00 2.17
5693 7840 9.159254 TCATCAATAGTGGTATAGTTCAGGAAT 57.841 33.333 0.00 0.00 0.00 3.01
5694 7841 8.547481 TCATCAATAGTGGTATAGTTCAGGAA 57.453 34.615 0.00 0.00 0.00 3.36
5695 7842 8.588472 CATCATCAATAGTGGTATAGTTCAGGA 58.412 37.037 0.00 0.00 0.00 3.86
5696 7843 7.821359 CCATCATCAATAGTGGTATAGTTCAGG 59.179 40.741 0.00 0.00 0.00 3.86
5697 7844 8.370940 ACCATCATCAATAGTGGTATAGTTCAG 58.629 37.037 0.00 0.00 42.85 3.02
5698 7845 8.150296 CACCATCATCAATAGTGGTATAGTTCA 58.850 37.037 0.00 0.00 42.79 3.18
5699 7846 7.118390 GCACCATCATCAATAGTGGTATAGTTC 59.882 40.741 0.00 0.00 42.79 3.01
5700 7847 6.936900 GCACCATCATCAATAGTGGTATAGTT 59.063 38.462 0.00 0.00 42.79 2.24
5701 7848 6.270927 AGCACCATCATCAATAGTGGTATAGT 59.729 38.462 0.00 0.00 42.79 2.12
5702 7849 6.592994 CAGCACCATCATCAATAGTGGTATAG 59.407 42.308 0.00 0.00 42.79 1.31
5703 7850 6.269769 TCAGCACCATCATCAATAGTGGTATA 59.730 38.462 0.00 0.00 42.79 1.47
5732 7879 5.467063 ACAGAAGAAAAGCGAGAAAACCTAG 59.533 40.000 0.00 0.00 0.00 3.02
5794 7944 7.618442 ACAAACAGATATCGCAATAAGTTACG 58.382 34.615 0.00 0.00 0.00 3.18
5795 7945 9.210426 CAACAAACAGATATCGCAATAAGTTAC 57.790 33.333 0.00 0.00 0.00 2.50
5796 7946 8.941977 ACAACAAACAGATATCGCAATAAGTTA 58.058 29.630 0.00 0.00 0.00 2.24
5797 7947 7.816640 ACAACAAACAGATATCGCAATAAGTT 58.183 30.769 0.00 0.00 0.00 2.66
5809 7959 7.335673 TCACAAACTTCAGACAACAAACAGATA 59.664 33.333 0.00 0.00 0.00 1.98
5816 7966 5.101628 GCATTCACAAACTTCAGACAACAA 58.898 37.500 0.00 0.00 0.00 2.83
5858 8008 1.907255 ACTCAAGTTACCCTACCAGGC 59.093 52.381 0.00 0.00 32.73 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.